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Bassett Adam S, Clark Halden J, Carlson Jaden M, Jobman Erin E, Sadd Helen R, Pelster Madeline C, Workman Aspen M, Kuehn Larry A, Kalbfleisch Theodore S, Piscatelli Heather, Carrie Michael, Krafsur Greta M, Grotelueschen Dale M, Vander Ley Brian L", "reference": { "type": "PubMed", "id": "38680232", "url": "https://pubmed.ncbi.nlm.nih.gov/38680232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q0VCA2-1", "protein_name": "Arrestin domain-containing protein 3", "gene_name": "ARRDC3", "tax_name": "Bovine" } ], "species": [ { "name": "Bos taurus", "taxid": 9913, "evidence": [ { "database": "UniProtKB", "id": "Q0VCA2", "url": "https://www.uniprot.org/uniprotkb/Q0VCA2" } ], "common_name": "Bovine", "glygen_name": "Bovine", "reference_species": "Bos taurus [9913]" } ], "record_id": "pubmed.38680232", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An OB-fold complex controls the repair pathways for DNA double-strand breaks.", "journal": "Nature communications", "date": "2018-09-25", "authors": "Gao Shengxian, Feng Sumin, Ning Shaokai, Liu Jingyan, Zhao Huayu, Xu Yixi, Shang Jinfeng, Li Kejiao, Li Qing, Guo Rong, Xu Dongyi", "reference": { "type": "PubMed", "id": "30254264", "url": "https://pubmed.ncbi.nlm.nih.gov/30254264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2KIJ1-1", "protein_name": "Shieldin complex subunit 1", "gene_name": "SHLD1", "tax_name": "Bovine" } ], "species": [ { "name": "Bos taurus", "taxid": 9913, "evidence": [ { "database": "UniProtKB", "id": "Q2KIJ1", "url": "https://www.uniprot.org/uniprotkb/Q2KIJ1" } ], "common_name": "Bovine", "glygen_name": "Bovine", "reference_species": "Bos taurus [9913]" } ], "record_id": "pubmed.30254264", "abstract": 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"ROW1 maintains quiescent centre identity by confining WOX5 expression to specific cells.", "journal": "Nature communications", "date": "2015-01-29", "authors": "Zhang Yuzhou, Jiao Yue, Liu Zhaohui, Zhu Yu-Xian", "reference": { "type": "PubMed", "id": "25631790", "url": "https://pubmed.ncbi.nlm.nih.gov/25631790" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1D2-1", "protein_name": "WUSCHEL-related homeobox 5", "gene_name": "WOX5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I443-1", "protein_name": "BRCA1-associated RING domain protein 1", "gene_name": "BARD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1D2", "url": "https://www.uniprot.org/uniprotkb/Q8H1D2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25631790", "abstract": "", 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence for intermolecular interactions between the intracellular domains of the arabidopsis receptor-like kinase ACR4, its homologs and the Wox5 transcription factor.", "journal": "PloS one", "date": "2015", "authors": "Meyer Matthew R, Shah Shweta, Zhang J, Rohrs Henry, Rao A Gururaj", "reference": { "type": "PubMed", "id": "25756623", "url": "https://pubmed.ncbi.nlm.nih.gov/25756623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1D2-1", "protein_name": "WUSCHEL-related homeobox 5", "gene_name": "WOX5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1D2", "url": "https://www.uniprot.org/uniprotkb/Q8H1D2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "phosphorylation": [ { "start_pos": 158, "end_pos": 158, "kinase_uniprot_canonical_ac": "Q9LX29-1", "kinase_gene_name": "ACR4", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1D2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1D2" }, { "database": "PubMed", "id": "25756623", "url": 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Biol.", "date": "1990", "authors": "Liboz T, Bardet C, Le Van Thai A, Axelos M, Lescure B", "reference": { "type": "PubMed", "id": "2101309", "url": "https://pubmed.ncbi.nlm.nih.gov/2101309" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W4H7-1", "protein_name": "Elongation factor 1-alpha 2", "gene_name": "A2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WL56-1", "protein_name": "Elongation factor 1-alpha 3", "gene_name": "A3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GTY0-1", "protein_name": "Elongation factor 1-alpha 4", "gene_name": "A4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4H7", "url": "https://www.uniprot.org/uniprotkb/Q8W4H7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.2101309", "abstract": "", 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"species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFG0", "url": "https://www.uniprot.org/uniprotkb/Q9FFG0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26571494", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling.", "journal": "Nat. Commun.", "date": "2016", "authors": "Zhang Fan, Qi Bin, Wang Likai, Zhao Bo, Rode Siddharth, Riggan Nathaniel D, Ecker Joseph R, Qiao Hong", "reference": { "type": "PubMed", "id": "27694846", "url": "https://pubmed.ncbi.nlm.nih.gov/27694846" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFG0-1", "protein_name": "Trihelix transcription factor ENAP2", "gene_name": "ENAP2; VFP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S814-1", "protein_name": "Ethylene-insensitive protein 2", "gene_name": "EIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZI9-1", "protein_name": "Trihelix transcription factor ENAP1", "gene_name": "ENAP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24606-1", "protein_name": "Protein ETHYLENE INSENSITIVE 3", "gene_name": "EIN3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": 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required for progression through female meiosis in Arabidopsis.", "journal": "Development (Cambridge, England)", "date": "2000-01", "authors": "Siddiqi I, Ganesh G, Grossniklaus U, Subbiah V", "reference": { "type": "PubMed", "id": "10654613", "url": "https://pubmed.ncbi.nlm.nih.gov/10654613" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FGN8-1", "protein_name": "Protein DYAD", "gene_name": "DYAD; SWI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGN8", "url": "https://www.uniprot.org/uniprotkb/Q9FGN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10654613", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"referenced_proteins": [ { "uniprot_canonical_ac": "Q9FGN8-1", "protein_name": "Protein DYAD", "gene_name": "DYAD; SWI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGN8", "url": "https://www.uniprot.org/uniprotkb/Q9FGN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11459834", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A cysteine-rich receptor-like kinase NCRK and a pathogen-induced protein kinase RBK1 are Rop 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Mediation of clathrin-dependent trafficking during cytokinesis and cell expansion by Arabidopsis stomatal cytokinesis defective proteins.", "journal": "The Plant cell", "date": "2013-10", "authors": "McMichael Colleen M, Reynolds Gregory D, Koch Lisa M, Wang Chao, Jiang Nan, Nadeau Jeanette, Sack Fred D, Gelderman Max B, Pan Jianwei, Bednarek Sebastian Y", "reference": { "type": "PubMed", "id": "24179130", "url": "https://pubmed.ncbi.nlm.nih.gov/24179130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWD5-1", "protein_name": "Coiled-coil domain-containing protein SCD2", "gene_name": "SCD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RXA7-1", "protein_name": "DENN domain and WD repeat-containing protein SCD1", "gene_name": "SCD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": 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is a homolog of the Saccharomyces cerevisiae RAD2 and human XPG DNA repair genes.", "journal": "The Plant journal : for cell and molecular biology", "date": "2001-05", "authors": "Liu Z, Hall J D, Mount D W", "reference": { "type": "PubMed", "id": "11439121", "url": "https://pubmed.ncbi.nlm.nih.gov/11439121" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ATY5-1", "protein_name": "DNA repair protein UVH3", "gene_name": "UVH3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ATY5", "url": "https://www.uniprot.org/uniprotkb/Q9ATY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11439121", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Taylor Ian, Footitt Steven, Bachmair Andreas, Theodoulou Frederica L, Holdsworth Michael J", "reference": { "type": "PubMed", "id": "19255443", "url": "https://pubmed.ncbi.nlm.nih.gov/19255443" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C776-1", "protein_name": "Arginyl-tRNA--protein transferase 2", "gene_name": "ATE2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZT48-1", "protein_name": "Arginyl-tRNA--protein transferase 1", "gene_name": "ATE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KCC2-1", "protein_name": "E3 ubiquitin-protein ligase PRT6", "gene_name": "PRT6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C776", "url": "https://www.uniprot.org/uniprotkb/Q9C776" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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"id": "22693280", "url": "https://pubmed.ncbi.nlm.nih.gov/22693280" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94KE2-1", "protein_name": "Protein TIME FOR COFFEE", "gene_name": "TIC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39204-1", "protein_name": "Transcription factor MYC2", "gene_name": "MYC2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94KE2", "url": "https://www.uniprot.org/uniprotkb/Q94KE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22693280", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression profiling of auxin-treated Arabidopsis roots: toward a molecular analysis of lateral root emergence.", "journal": "Plant Cell Physiol.", "date": "2006", "authors": "Laskowski Marta, Biller Steven, Stanley Ken, Kajstura Tymoteusz, Prusty Reeta", "reference": { "type": "PubMed", "id": "16621846", "url": "https://pubmed.ncbi.nlm.nih.gov/16621846" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94BT2-1", "protein_name": "Auxin-induced in root cultures protein 12", 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Anchorage of plant RanGAP to the nuclear envelope involves novel nuclear-pore-associated proteins.", "journal": "Current biology : CB", "date": "2007-07-03", "authors": "Xu Xianfeng Morgan, Meulia Tea, Meier Iris", "reference": { "type": "PubMed", "id": "17600715", "url": "https://pubmed.ncbi.nlm.nih.gov/17600715" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94AV5-1", "protein_name": "WPP domain-interacting protein 3", "gene_name": "WIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C500-1", "protein_name": "WPP domain-containing protein 2", "gene_name": "WPP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMH6-1", "protein_name": "WPP domain-containing protein 1", "gene_name": "WPP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXA4-1", "protein_name": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel plant SUN-KASH bridges are involved in RanGAP anchoring and nuclear shape determination.", "journal": "J. Cell Biol.", "date": "2012", "authors": "Zhou Xiao, Graumann Katja, Evans David E, Meier Iris", "reference": { "type": "PubMed", "id": "22270916", "url": "https://pubmed.ncbi.nlm.nih.gov/22270916" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94AV5-1", "protein_name": "WPP domain-interacting protein 3", "gene_name": "WIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GXA4-1", "protein_name": "WPP domain-interacting protein 1", "gene_name": "WIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FH18-1", "protein_name": "WPP domain-interacting protein 2", "gene_name": "WIP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FF75-1", "protein_name": "SUN domain-containing protein 1", "gene_name": "SUN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LE82-1", "protein_name": "RAN GTPase-activating protein 1", "gene_name": "RANGAP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants.", "journal": "Gene", "date": "2006", "authors": "Wagner Raik, Pfannschmidt Thomas", "reference": { "type": "PubMed", "id": "16934950", "url": "https://pubmed.ncbi.nlm.nih.gov/16934950" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWX7-1", "protein_name": "Protein indeterminate-domain 6, chloroplastic", "gene_name": "BLJ; IDD6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUL3-1", "protein_name": "Protein indeterminate-domain 5, chloroplastic", "gene_name": "IDD5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYC1-1", "protein_name": "Protein indeterminate-domain 4, chloroplastic", "gene_name": "IDD4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWX7", "url": 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Cell Biol.", "date": "2010", "authors": "Hu Honghong, Boisson-Dernier Aur\u00e9lien, Israelsson-Nordstr\u00f6m Maria, B\u00f6hmer Maik, Xue Shaowu, Ries Amber, Godoski Jan, Kuhn Josef M, Schroeder Julian I", "reference": { "type": "PubMed", "id": "20010812", "url": "https://pubmed.ncbi.nlm.nih.gov/20010812" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C6F5-1", "protein_name": "Beta carbonic anhydrase 6, mitochondrial", "gene_name": "BCA6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P27140-1", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "gene_name": "BCA1; CA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42737-1", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "gene_name": "BCA2; CA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94CE4-1", "protein_name": "Beta carbonic anhydrase 4", "gene_name": "BCA4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": 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Plant", "date": "2022", "authors": "Su Xiaodong, Cao Duanfang, Pan Xiaowei, Shi Lifang, Liu Zhenfeng, Dall'Osto Luca, Bassi Roberto, Zhang Xinzheng, Li Mei", "reference": { "type": "PubMed", "id": "35123031", "url": "https://pubmed.ncbi.nlm.nih.gov/35123031" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RXS1-1", "protein_name": "Photosynthetic NDH subunit of subcomplex B 4, chloroplastic", "gene_name": "PNSB4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RXS1", "url": "https://www.uniprot.org/uniprotkb/Q8RXS1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.35123031", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"uniprot_canonical_ac": "Q93ZR3-1", "protein_name": "Pre-mRNA-processing factor 39-1", "gene_name": "PRP39-1; PRP39A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZR3", "url": "https://www.uniprot.org/uniprotkb/Q93ZR3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17380304", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a.", "journal": "Genetics", "date": "2017-12", "authors": "Kanno Tatsuo, Lin Wen-Dar, Fu Jason L, Chang Chia-Liang, Matzke Antonius J M, Matzke Marjori", "reference": { "type": "PubMed", "id": "28971960", "url": "https://pubmed.ncbi.nlm.nih.gov/28971960" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93ZR3-1", "protein_name": "Pre-mRNA-processing factor 39-1", "gene_name": "PRP39-1; PRP39A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KHG8-1", "protein_name": "Pre-mRNA-processing factor 39-2", "gene_name": "PRP39-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY15-1", "protein_name": "RNA-binding motif protein 25", "gene_name": "RBM25", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZR3", "url": "https://www.uniprot.org/uniprotkb/Q93ZR3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28971960", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aquaporin NIP2;1 is mainly localized to the ER membrane and shows root-specific accumulation in Arabidopsis thaliana.", "journal": "Plant & cell physiology", "date": "2006-10", "authors": "Mizutani Masahiro, Watanabe Satoshi, Nakagawa Tsuyoshi, Maeshima Masayoshi", "reference": { "type": "PubMed", "id": "16954136", "url": "https://pubmed.ncbi.nlm.nih.gov/16954136" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W037-1", "protein_name": "Aquaporin NIP2-1", "gene_name": "NIP2-1; NIP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W037", "url": "https://www.uniprot.org/uniprotkb/Q8W037" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of mammalian-like purple acid phosphatases in a wide range of plants.", "journal": "Gene", "date": "2000", "authors": "Schenk G, Guddat L W, Ge Y, Carrington L E, Hume D A, Hamilton S, de Jersey J", "reference": { "type": "PubMed", "id": "10854785", "url": "https://pubmed.ncbi.nlm.nih.gov/10854785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYZ2-1", "protein_name": "Purple acid phosphatase 8", "gene_name": "PAP8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYZ2", "url": "https://www.uniprot.org/uniprotkb/Q8VYZ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10854785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"uniprot_canonical_ac": "Q8VZW1-1", "protein_name": "Aquaporin NIP1-1", "gene_name": "NIP1-1; NLM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LFP7", "url": "https://www.uniprot.org/uniprotkb/Q8LFP7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11007982", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae.", "journal": "BMC plant biology", "date": "2015-08-14", "authors": "Burgess Alice Louise, David Rakesh, Searle Iain Robert", "reference": { "type": "PubMed", "id": "26268215", "url": "https://pubmed.ncbi.nlm.nih.gov/26268215" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYM6-1", "protein_name": "26S rRNA (cytosine-C(5))-methyltransferase NOP2B", "gene_name": "NOP2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FG73-1", "protein_name": "25S rRNA (cytosine-C(5))-methyltransferase NOP2A", "gene_name": "NOP2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84MA1-1", "protein_name": "rRNA (cytosine-C(5))-methyltransferase NOP2C", "gene_name": "NOP2C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYE8-1", "protein_name": "25S rRNA (cytosine-C(5))-methyltransferase NSUN5", "gene_name": "NSUN5", "tax_name": "Mouse-ear cress" } ], 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Insights into eukaryotic Rubisco assembly - crystal structures of RbcX chaperones from Arabidopsis thaliana.", "journal": "Biochimica et biophysica acta", "date": "2013-04", "authors": "Kolesinski Piotr, Golik Przemyslaw, Grudnik Przemyslaw, Piechota Janusz, Markiewicz Micha\u0142, Tarnawski Miroslaw, Dubin Grzegorz, Szczepaniak Andrzej", "reference": { "type": "PubMed", "id": "23295968", "url": "https://pubmed.ncbi.nlm.nih.gov/23295968" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L9X2-1", "protein_name": "Chaperonin-like RbcX protein 2, chloroplastic", "gene_name": "RBCX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AU9-1", "protein_name": "Chaperonin-like RBCX protein 1, chloroplastic", "gene_name": "RBCX1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L9X2", "url": "https://www.uniprot.org/uniprotkb/Q8L9X2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 168, "end_pos": 168, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on rbcL binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8L9X2", "url": "https://www.uniprot.org/uniprotkb/Q8L9X2" }, { "database": "PubMed", "id": "23295968", "url": "https://pubmed.ncbi.nlm.nih.gov/23295968" } ], "uniprot_canonical_ac": "Q8L9X2-1" }, { "start_pos": 108, "end_pos": 108, "sequence_org": "C", "sequence_mut": "L", "comment": "No effect on rbcL binding; when associated with A-133.", "evidence": [ { "database": "UniProtKB", "id": "Q94AU9", "url": "https://www.uniprot.org/uniprotkb/Q94AU9" }, { "database": "PubMed", "id": "23295968", "url": "https://pubmed.ncbi.nlm.nih.gov/23295968" } ], "uniprot_canonical_ac": "Q94AU9-1" }, { "start_pos": 133, "end_pos": 133, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on rbcL binding; when associated with L-108.", "evidence": [ { "database": "UniProtKB", "id": "Q94AU9", "url": "https://www.uniprot.org/uniprotkb/Q94AU9" }, { "database": "PubMed", "id": "23295968", "url": "https://pubmed.ncbi.nlm.nih.gov/23295968" } ], "uniprot_canonical_ac": "Q94AU9-1" } ], "record_id": "pubmed.23295968", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genes encoding ADP-ribosylation factors in Arabidopsis thaliana; genome analysis and antisense suppression.", "journal": "J. Exp. Bot.", "date": "2005", "authors": "Gebbie Leigh K, Burn Joanne E, Hocart Charles H, Williamson Richard E", "reference": { "type": "PubMed", "id": "15723828", "url": "https://pubmed.ncbi.nlm.nih.gov/15723828" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W4C8-1", "protein_name": "ADP-ribosylation factor-like protein 8c", "gene_name": "ARL8C; ARLA1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Y31-1", "protein_name": "ADP-ribosylation factor-like protein 8b", "gene_name": "ARL8B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IZ82-1", "protein_name": "ADP-ribosylation factor-like protein 8d", "gene_name": "ARL8D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY57-1", "protein_name": "ADP-ribosylation factor-like protein 8a", "gene_name": "ARL8A; ARLA1C", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4C8", "url": "https://www.uniprot.org/uniprotkb/Q8W4C8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15723828", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A host small GTP-binding protein ARL8 plays crucial roles in tobamovirus RNA replication.", "journal": "PLoS pathogens", "date": "2011-12", "authors": "Nishikiori Masaki, Mori Masashi, Dohi Koji, Okamura Hideyasu, Katoh Etsuko, Naito Satoshi, Meshi Tetsuo, Ishikawa Masayuki", "reference": { "type": "PubMed", "id": "22174675", "url": "https://pubmed.ncbi.nlm.nih.gov/22174675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W4C8-1", "protein_name": "ADP-ribosylation factor-like protein 8c", "gene_name": "ARL8C; ARLA1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Y31-1", "protein_name": "ADP-ribosylation factor-like protein 8b", "gene_name": "ARL8B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IZ82-1", "protein_name": "ADP-ribosylation factor-like protein 8d", "gene_name": "ARL8D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY57-1", "protein_name": "ADP-ribosylation factor-like protein 8a", "gene_name": "ARL8A; ARLA1C", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4C8", "url": "https://www.uniprot.org/uniprotkb/Q8W4C8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22174675", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The PIN auxin efflux facilitators: evolutionary and functional perspectives.", "journal": "Trends Plant Sci.", "date": "2005", "authors": "Paponov Ivan A, Teale William D, Trebar Martina, Blilou Ikram, Palme Klaus", "reference": { "type": "PubMed", "id": "15817418", "url": "https://pubmed.ncbi.nlm.nih.gov/15817418" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFD0-1", "protein_name": "Auxin efflux carrier component 5", "gene_name": "PIN5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFP6-1", "protein_name": "Auxin efflux carrier component 8", "gene_name": "PIN8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWZ6-1", "protein_name": "Auxin efflux carrier component 4", "gene_name": "PIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940Y5-1", "protein_name": "Auxin efflux carrier component 7", "gene_name": "PIN7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6B8-1", "protein_name": "Auxin efflux carrier component 1", "gene_name": "PIN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7Z8-1", "protein_name": "Auxin efflux carrier component 3", "gene_name": "PIN3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU77-1", "protein_name": "Auxin efflux carrier component 2", "gene_name": "EIR1; PIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SQH6-1", "protein_name": "Auxin efflux carrier component 6", "gene_name": "PIN6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFD0", "url": "https://www.uniprot.org/uniprotkb/Q9FFD0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15817418", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter.", "journal": "Nature", "date": "2009-06-25", "authors": "Mravec Jozef, Sk\u016fpa Petr, Bailly Aur\u00e9lien, Hoyerov\u00e1 Kl\u00e1ra, Krecek Pavel, Bielach Agnieszka, Petr\u00e1sek Jan, Zhang Jing, Gaykova Vassilena, Stierhof York-Dieter, Dobrev Petre I, Schwarzerov\u00e1 Katerina, Rolc\u00edk Jakub, Seifertov\u00e1 Daniela, Luschnig Christian, Benkov\u00e1 Eva, Zaz\u00edmalov\u00e1 Eva, Geisler Markus, Friml Jir\u00ed", "reference": { "type": "PubMed", "id": "19506555", "url": "https://pubmed.ncbi.nlm.nih.gov/19506555" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FFD0-1", "protein_name": "Auxin efflux carrier component 5", "gene_name": "PIN5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFP6-1", "protein_name": "Auxin efflux carrier component 8", "gene_name": "PIN8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SQH6-1", "protein_name": "Auxin efflux carrier component 6", "gene_name": "PIN6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFD0", "url": "https://www.uniprot.org/uniprotkb/Q9FFD0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19506555", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]