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4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms.", "journal": "The Plant journal : for cell and molecular biology", "date": "1999-07", "authors": "Ehlting J, B\u00fcttner D, Wang Q, Douglas C J, Somssich I E, Kombrink E", "reference": { "type": "PubMed", "id": "10417722", "url": "https://pubmed.ncbi.nlm.nih.gov/10417722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42524-1", "protein_name": "4-coumarate--CoA ligase 1", "gene_name": "4CL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S725-1", "protein_name": "4-coumarate--CoA ligase 2", "gene_name": "4CL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S777-1", "protein_name": "4-coumarate--CoA ligase 3", "gene_name": "4CL3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42524", "url": 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(4CL) substrate recognition domains.", "journal": "Plant J.", "date": "2001", "authors": "Ehlting J, Shin J J, Douglas C J", "reference": { "type": "PubMed", "id": "11576429", "url": "https://pubmed.ncbi.nlm.nih.gov/11576429" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42524-1", "protein_name": "4-coumarate--CoA ligase 1", "gene_name": "4CL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S725-1", "protein_name": "4-coumarate--CoA ligase 2", "gene_name": "4CL2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42524", "url": "https://www.uniprot.org/uniprotkb/Q42524" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11576429", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Biol. Chem.", "date": "2005", "authors": "Schneider Katja, Kienow Lucie, Schmelzer Elmon, Colby Thomas, Bartsch Michael, Miersch Otto, Wasternack Claus, Kombrink Erich, Stuible Hans-Peter", "reference": { "type": "PubMed", "id": "15677481", "url": "https://pubmed.ncbi.nlm.nih.gov/15677481" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42524-1", "protein_name": "4-coumarate--CoA ligase 1", "gene_name": "4CL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84P23-1", "protein_name": "4-coumarate--CoA ligase-like 9", "gene_name": "4CLL9; AITR6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0X9-1", "protein_name": "4-coumarate--CoA ligase-like 7", "gene_name": "4CLL7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42524", "url": "https://www.uniprot.org/uniprotkb/Q42524" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15677481", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple cis-regulatory elements regulate distinct and complex patterns of developmental and wound-induced expression of Arabidopsis thaliana 4CL gene family members.", "journal": "Planta", "date": "2006", "authors": "Soltani Bahram M, Ehlting J\u00fcrgen, Hamberger Bj\u00f6rn, Douglas Carl J", "reference": { "type": "PubMed", "id": "16738863", "url": "https://pubmed.ncbi.nlm.nih.gov/16738863" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42524-1", "protein_name": "4-coumarate--CoA ligase 1", "gene_name": "4CL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU36-1", "protein_name": "4-coumarate--CoA ligase 4", "gene_name": "4CL4; 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Soc.", "date": "2011", "authors": "Wang Yechun, Yi Hankuil, Wang Melissa, Yu Oliver, Jez Joseph M", "reference": { "type": "PubMed", "id": "22129213", "url": "https://pubmed.ncbi.nlm.nih.gov/22129213" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q42524-1", "protein_name": "4-coumarate--CoA ligase 1", "gene_name": "4CL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42524", "url": "https://www.uniprot.org/uniprotkb/Q42524" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22129213", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis thaliana 4-coumarate:CoA ligase (4CL) gene: stress and developmentally regulated expression and nucleotide sequence of its cDNA.", "journal": "Plant Mol. 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and biochemical characterization of Arabidopsis alcohol dehydrogenases reveals distinct functional properties but similar redox sensitivity.", "journal": "The Plant journal : for cell and molecular biology", "date": "2024-02-02", "authors": "Meloni Maria, Rossi Jacopo, Fanti Silvia, Carloni Giacomo, Tedesco Daniele, Treffon Patrick, Piccinini Luca, Falini Giuseppe, Trost Paolo, Vierling Elizabeth, Licausi Francesco, Giuntoli Beatrice, Musiani Francesco, Fermani Simona, Zaffagnini Mirko", "reference": { "type": "PubMed", "id": "38308388", "url": "https://pubmed.ncbi.nlm.nih.gov/38308388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96533-1", "protein_name": "Alcohol dehydrogenase class-3", "gene_name": "ADH2; HOT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P06525-1", "protein_name": "Alcohol 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Molecular properties of plant class III alcohol dehydrogenase provide further insights into the origins, structure and function of plant class P and liver class I alcohol dehydrogenases.", "journal": "Eur. J. Biochem.", "date": "1996", "authors": "Mart\u00ednez M C, Achkor H, Persson B, Fern\u00e1ndez M R, Shafqat J, Farr\u00e9s J, J\u00f6rnvall H, Par\u00e9s X", "reference": { "type": "PubMed", "id": "8944774", "url": "https://pubmed.ncbi.nlm.nih.gov/8944774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96533-1", "protein_name": "Alcohol dehydrogenase class-3", "gene_name": "ADH2; HOT5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q96533", "url": "https://www.uniprot.org/uniprotkb/Q96533" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8944774", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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[] } ] }, { "title": "Two novel targeting peptide degrading proteases, PrePs, in mitochondria and chloroplasts, so similar and still different.", "journal": "J. 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Soc. Trans.", "date": "2004", "authors": "Robaglia C, Menand B, Lei Y, Sormani R, Nicola\u00ef M, Gery C, Teoul\u00e9 E, Deprost D, Meyer C", "reference": { "type": "PubMed", "id": "15270681", "url": "https://pubmed.ncbi.nlm.nih.gov/15270681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FR53-1", "protein_name": "Serine/threonine-protein kinase TOR", "gene_name": "TOR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FR53", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15270681", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation.", "journal": "EMBO reports", "date": "2007-09", "authors": "Deprost Doroth\u00e9e, Yao Lei, Sormani Rodnay, Moreau Manon, Leterreux Guillaume, Nicola\u00ef Maryse, Bedu Magali, Robaglia Christophe, Meyer Christian", "reference": { "type": "PubMed", "id": "17721444", "url": "https://pubmed.ncbi.nlm.nih.gov/17721444" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FR53-1", "protein_name": "Serine/threonine-protein kinase TOR", "gene_name": "TOR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FR53", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17721444", 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"authors": "Zvereva Anna S, Golyaev Victor, Turco Silvia, Gubaeva Ekaterina G, Rajeswaran Rajendran, Schepetilnikov Mikhail V, Srour Ola, Ryabova Lyubov A, Boller Thomas, Pooggin Mikhail M", "reference": { "type": "PubMed", "id": "27120694", "url": "https://pubmed.ncbi.nlm.nih.gov/27120694" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FR53-1", "protein_name": "Serine/threonine-protein kinase TOR", "gene_name": "TOR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FR53", "url": "https://www.uniprot.org/uniprotkb/Q9FR53" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.27120694", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ 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Does not form the high-order complex with SHANK1.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z214", "url": "https://www.uniprot.org/uniprotkb/Q9Z214" }, { "database": "PubMed", "id": "10798399", "url": "https://pubmed.ncbi.nlm.nih.gov/10798399" }, { "database": "PubMed", "id": "19345194", "url": "https://pubmed.ncbi.nlm.nih.gov/19345194" } ], "uniprot_canonical_ac": "Q9Z214-1" }, { "start_pos": 344, "end_pos": 344, "sequence_org": "I", "sequence_mut": "R", "comment": "Dimeric form; when associated with E-349. Does not form the high-order complex with SHANK1; when associated with E-349. Does not change its interaction with STX12; when associated with E-349. Reduces localization to the spine; when associated with E-349. Affects dendritic spine structure; when associated with E-349. Decreases synaptic transmission; when associated with E-349. Does not affect glutamate receptors ratio; when associated with E-349.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z214", "url": "https://www.uniprot.org/uniprotkb/Q9Z214" }, { "database": "PubMed", "id": "19345194", "url": "https://pubmed.ncbi.nlm.nih.gov/19345194" } ], "uniprot_canonical_ac": "Q9Z214-1" }, { "start_pos": 349, "end_pos": 349, "sequence_org": "I", "sequence_mut": "E", "comment": "Dimeric form; when associated with R-344. Does not form the high-order complex with SHANK1; when associated with R-344. Does not change its interaction with STX12; when associated with R-344. Reduces localization to the spine; when associated with R-344. Affects dendritic spine structure; when associated with R-344. Decreases synaptic transmission; when associated with R-344. Does not affect glutamate receptors ratio; when associated with R-344.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z214", "url": "https://www.uniprot.org/uniprotkb/Q9Z214" }, { "database": "PubMed", "id": "19345194", "url": "https://pubmed.ncbi.nlm.nih.gov/19345194" } ], "uniprot_canonical_ac": "Q9Z214-1" } ], "record_id": "pubmed.19345194", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Homer1/mGluR1-mediated ER stress contributes to lysophosphatidic acid-induced neurotoxicity in cortical neurons.", "journal": "Neurochemistry international", "date": "2019", "authors": "Zhu L, Zhu J, Guo SW", "reference": { "type": "PubMed", "id": "31369778", "url": "https://pubmed.ncbi.nlm.nih.gov/31369778" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z214-1", "protein_name": "Homer protein homolog 1", "gene_name": "Homer1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z214", "url": "https://www.uniprot.org/uniprotkb/Q9Z214" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.31369778", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glutamatergic postsynaptic density in early life stress programming: Topographic gene expression of mGlu5 receptors and Homer proteins.", "journal": "Progress in neuro-psychopharmacology & biological psychiatry", "date": "2020", "authors": "Buonaguro EF, Morley-Fletcher S, Avagliano C, Vellucci L, Iasevoli F, Bouwalerh H, Van Camp G, Nicoletti F, Maccari 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