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ptchd1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q14B62", "url": "https://www.uniprot.org/uniprotkb/Q14B62" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37990104", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nonsynonymous Mutations in Intellectual Disability and Autism Spectrum Disorder Gene PTCHD1 Disrupt N-Glycosylation and Reduce Protein Stability.", "journal": "Cells", "date": "2024-01-21", "authors": "Xie Connie T Y, Pastore Stephen F, Vincent John B, Frankland Paul W, Hamel Paul A", "reference": { "type": "PubMed", "id": "38275824", "url": "https://pubmed.ncbi.nlm.nih.gov/38275824" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14B62-1", "protein_name": "Patched domain-containing protein 1", "gene_name": "Ptchd1; 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No effect on protein half-life and stability.", "evidence": [ { "database": "UniProtKB", "id": "Q14B62", "url": "https://www.uniprot.org/uniprotkb/Q14B62" }, { "database": "PubMed", "id": "38275824", "url": "https://pubmed.ncbi.nlm.nih.gov/38275824" } ], "uniprot_canonical_ac": "Q14B62-1" }, { "start_pos": 885, "end_pos": 888, "sequence_org": "ITTV", "sequence_mut": "", "comment": "No effect on post-translational processing. No effect on protein half-life and stability.", "evidence": [ { "database": "UniProtKB", "id": "Q14B62", "url": "https://www.uniprot.org/uniprotkb/Q14B62" }, { "database": "PubMed", "id": "38275824", "url": "https://pubmed.ncbi.nlm.nih.gov/38275824" } ], "uniprot_canonical_ac": "Q14B62-1" } ], "record_id": "pubmed.38275824", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alloreactive T cells respond specifically to multiple distinct peptide-MHC complexes.", "journal": "Nature immunology", "date": "2007-04", "authors": "Felix Nathan J, Donermeyer David L, Horvath Stephen, Walters James J, Gross Michael L, Suri Anish, Allen Paul M", "reference": { "type": "PubMed", "id": "17322886", "url": "https://pubmed.ncbi.nlm.nih.gov/17322886" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQD1-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "Rab5a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QZI9-1", "protein_name": "Serine incorporator 3", "gene_name": "Serinc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35598-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "Adam10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P07724-1", "protein_name": "Albumin", "gene_name": "Alb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99LC5-1", "protein_name": "Electron transfer flavoprotein subunit alpha, mitochondrial", "gene_name": "Etfa", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P20029-1", "protein_name": "Endoplasmic reticulum chaperone BiP", "gene_name": "Hspa5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91VR5-1", "protein_name": "ATP-dependent RNA helicase DDX1", "gene_name": "Ddx1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P63017-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "Hspa8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70658-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "Cxcr4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DBG5-1", "protein_name": "Perilipin-3", "gene_name": "Plin3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91VU0-1", "protein_name": "Protein FAM3C", "gene_name": "Fam3c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80T14-1", 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"uniprot_canonical_ac": "P10126-1", "protein_name": "Elongation factor 1-alpha 1", "gene_name": "Eef1a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P06684-1", "protein_name": "Complement C5", "gene_name": "C5; Hc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WV54-1", "protein_name": "Acid ceramidase", "gene_name": "Asah1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P01887-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2m", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18242-1", "protein_name": "Cathepsin D", "gene_name": "Ctsd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P16858-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "Gapdh", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P17225-1", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "Ptbp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91XL3-1", "protein_name": "UDP-glucuronic acid decarboxylase 1", "gene_name": "Uxs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z2M6-1", "protein_name": "Ubiquitin-like protein 3", "gene_name": "Ubl3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9B7-1", "protein_name": "Kinase D-interacting substrate of 220 kDa", "gene_name": "Kidins220", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CBR6-1", "protein_name": "Tsukushi", "gene_name": "Tsku", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P52332-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "Jak1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P02089-1", "protein_name": "Hemoglobin subunit beta-2", "gene_name": "Hbb-b2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D780-1", "protein_name": "SLAM family member 9", "gene_name": "Slamf9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ER00-1", "protein_name": "Syntaxin-12", "gene_name": "Stx12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08583-1", "protein_name": "THO complex subunit 4", "gene_name": "Alyref", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62960-1", "protein_name": "Y-box-binding protein 1", "gene_name": "Ybx1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17322886", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of three novel proteins (SGSM1, 2, 3) which modulate small G protein (RAP and RAB)-mediated signaling pathway.", "journal": "Genomics", "date": "2007", "authors": "Yang H, Sasaki T, Minoshima S, Shimizu N", "reference": { "type": "PubMed", "id": "17509819", "url": "https://pubmed.ncbi.nlm.nih.gov/17509819" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQD1-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "Rab5a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P61224-1", "protein_name": "Ras-related protein Rap-1b", "gene_name": "RAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56371-1", "protein_name": "Ras-related protein Rab-4A", "gene_name": "Rab4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P63011-1", "protein_name": "Ras-related protein Rab-3A", "gene_name": "Rab3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10114-1", "protein_name": "Ras-related protein Rap-2a", "gene_name": "RAP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62834-1", "protein_name": "Ras-related protein Rap-1A", "gene_name": "RAP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2NKQ1-1", "protein_name": "Small G protein signaling modulator 1", "gene_name": "SGSM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43147-1", "protein_name": "Small G protein signaling modulator 2", "gene_name": "SGSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HU1-1", "protein_name": "Small G protein signaling modulator 3", "gene_name": "SGSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62492-1", "protein_name": "Ras-related protein Rab-11A", "gene_name": "Rab11a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P61225-1", "protein_name": "Ras-related protein Rap-2b", "gene_name": "RAP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BPQ7-1", "protein_name": "Small G protein signaling modulator 1", "gene_name": "Sgsm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VCZ6-1", "protein_name": "Small G protein signaling modulator 3", "gene_name": "Sgsm3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80U12-1", "protein_name": "Small G protein signaling modulator 2", "gene_name": "Sgsm2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P55258-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "Rab8a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17509819", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A pathway for phagosome maturation during engulfment of apoptotic cells.", "journal": "Nature cell biology", "date": "2008", "authors": "Kinchen JM, Doukoumetzidis K, Almendinger J, Stergiou L, Tosello-Trampont A, Sifri CD, Hengartner MO, Ravichandran KS", "reference": { "type": "PubMed", "id": "18425118", "url": "https://pubmed.ncbi.nlm.nih.gov/18425118" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQD1-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "Rab5a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P39054-1", "protein_name": "Dynamin-2", "gene_name": "Dnm2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 34, "end_pos": 34, "sequence_org": "S", "sequence_mut": "N", "comment": "Inhibits endosome localization. Disrupts interaction of RAB5A and OCRL with INPP5F. Prevents its localization to apoptotic cell corpse-containing early phagosomes. Maturation of apoptotic cell-containing phagosome into acidic phagosomes is decreased. Interacts with PIK3C3.", "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" }, { "database": "PubMed", "id": "18425118", "url": "https://pubmed.ncbi.nlm.nih.gov/18425118" }, { "database": "PubMed", "id": "25869668", "url": "https://pubmed.ncbi.nlm.nih.gov/25869668" } ], "uniprot_canonical_ac": "Q9CQD1-1" }, { "start_pos": 79, "end_pos": 79, "sequence_org": "Q", "sequence_mut": "L", "comment": "Induces the formation of larger endosomes. No effect on interaction with INPP5F. Prevents interaction with DYN2 without affecting the interaction with PIK3C3.", "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" }, { "database": "PubMed", "id": "25869668", "url": "https://pubmed.ncbi.nlm.nih.gov/25869668" }, { "database": "PubMed", "id": "18425118", "url": "https://pubmed.ncbi.nlm.nih.gov/18425118" } ], "uniprot_canonical_ac": "Q9CQD1-1" }, { "start_pos": 44, "end_pos": 44, "sequence_org": "K", "sequence_mut": "A", "comment": "Apoptotic cell corpse-containing phagosomes fail to mature into acidic phagosomes. Loss of PIK3C3 and RAB5A recruitment to phagosomes.", "evidence": [ { "database": "UniProtKB", "id": "P39054", "url": "https://www.uniprot.org/uniprotkb/P39054" }, { "database": "PubMed", "id": "18425118", "url": "https://pubmed.ncbi.nlm.nih.gov/18425118" } ], "uniprot_canonical_ac": "P39054-1" } ], "record_id": "pubmed.18425118", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The class IA phosphatidylinositol 3-kinase p110-beta subunit is a positive regulator of autophagy.", "journal": "J. Cell Biol.", "date": "2010", "authors": "Dou Zhixun, Chattopadhyay Mohar, Pan Ji-An, Guerriero Jennifer L, Jiang Ya-Ping, Ballou Lisa M, Yue Zhenyu, Lin Richard Z, Zong Wei-Xing", "reference": { "type": "PubMed", "id": "21059846", "url": "https://pubmed.ncbi.nlm.nih.gov/21059846" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQD1-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "Rab5a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PF93-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "Pik3c3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BTI9-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "Pik3cb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDJ3-1", "protein_name": "Beclin 1-associated autophagy-related key regulator", "gene_name": "Atg14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VD65-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "Pik3r4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88597-1", "protein_name": "Beclin-1", "gene_name": "Becn1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21059846", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rab31 and APPL2 enhance FcgammaR-mediated phagocytosis through PI3K/Akt signaling in macrophages.", "journal": "Mol. Biol. Cell", "date": "2015", "authors": "Yeo JC, Wall AA, Luo L, Stow JL", "reference": { "type": "PubMed", "id": "25568335", "url": "https://pubmed.ncbi.nlm.nih.gov/25568335" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQD1-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "Rab5a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K3H0-1", "protein_name": "DCC-interacting protein 13-alpha", "gene_name": "Appl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K3G9-1", "protein_name": "DCC-interacting protein 13-beta", "gene_name": "Appl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q921E2-1", "protein_name": "Ras-related protein Rab-31", "gene_name": "Rab31", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus 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Zou Y, Strittmatter SM, De Camilli P", "reference": { "type": "PubMed", "id": "25869668", "url": "https://pubmed.ncbi.nlm.nih.gov/25869668" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQD1-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "Rab5a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPW0-1", "protein_name": "Inositol polyphosphate-4-phosphatase type I A", "gene_name": "Inpp4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NVF0-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "Ocrl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYA4-1", "protein_name": "Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4", "gene_name": "MTMR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0I1-1", "protein_name": "Myotubularin-related protein 12", "gene_name": "MTMR12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8CDA1-1", "protein_name": "Phosphatidylinositide 4-phosphatase SAC2", "gene_name": "Inpp5f", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O00443-1", "protein_name": "Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha", "gene_name": "PIK3C2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2H2-1", "protein_name": "Phosphatidylinositide 4-phosphatase SAC2", "gene_name": "INPP5F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13614-1", "protein_name": "Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR2", "gene_name": "MTMR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTU6-1", "protein_name": "Phosphatidylinositol 4-kinase type 2-alpha", "gene_name": "PI4K2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCG2-1", "protein_name": "Phosphatidylinositol 4-kinase type 2-beta", "gene_name": "PI4K2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20339-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "RAB5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92562-1", "protein_name": "Polyphosphoinositide phosphatase", "gene_name": "FIG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I7-1", "protein_name": "1-phosphatidylinositol 3-phosphate 5-kinase", "gene_name": "PIKFYVE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEB9-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "PIK3C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13496-1", "protein_name": "Myotubularin", "gene_name": "MTM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8K337-1", "protein_name": "Type II 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"sequence_org": "S", "sequence_mut": "N", "comment": "Inhibits endosome localization. Disrupts interaction of RAB5A and OCRL with INPP5F. Prevents its localization to apoptotic cell corpse-containing early phagosomes. Maturation of apoptotic cell-containing phagosome into acidic phagosomes is decreased. Interacts with PIK3C3.", "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" }, { "database": "PubMed", "id": "18425118", "url": "https://pubmed.ncbi.nlm.nih.gov/18425118" }, { "database": "PubMed", "id": "25869668", "url": "https://pubmed.ncbi.nlm.nih.gov/25869668" } ], "uniprot_canonical_ac": "Q9CQD1-1" }, { "start_pos": 79, "end_pos": 79, "sequence_org": "Q", "sequence_mut": "L", "comment": "Induces the formation of larger endosomes. No effect on interaction with INPP5F. Prevents interaction with DYN2 without affecting the interaction with PIK3C3.", "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" }, { "database": "PubMed", "id": "25869668", "url": "https://pubmed.ncbi.nlm.nih.gov/25869668" }, { "database": "PubMed", "id": "18425118", "url": "https://pubmed.ncbi.nlm.nih.gov/18425118" } ], "uniprot_canonical_ac": "Q9CQD1-1" }, { "start_pos": 460, "end_pos": 460, "sequence_org": "D", "sequence_mut": "A", "comment": "Has a diffuse cytosolic localization.", "evidence": [ { "database": "UniProtKB", "id": "Q8CDA1", "url": "https://www.uniprot.org/uniprotkb/Q8CDA1" }, { "database": "PubMed", "id": "25869668", "url": "https://pubmed.ncbi.nlm.nih.gov/25869668" } ], "uniprot_canonical_ac": "Q8CDA1-1" }, { "start_pos": 460, "end_pos": 460, "sequence_org": "D", "sequence_mut": "N", "comment": "Loss of inositol 4-phosphatase activity. No effect on subcellular localization. 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Bingqi, Hong Mukeng, Ma Fopei, Li Meng, Wu Xianghui, Chen Feilong, Zhu Junqing, Chen Shixian, Zheng Songyuan, Li Juan", "reference": { "type": "PubMed", "id": "38485453", "url": "https://pubmed.ncbi.nlm.nih.gov/38485453" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQD1-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "Rab5a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQD1", "url": "https://www.uniprot.org/uniprotkb/Q9CQD1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38485453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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Biol.", "date": "2003", "authors": "Suemizu Hiroshi, Aiba Kazuhiro, Yoshikawa Toshiyuki, Sharov Alexei A, Shimozawa Nobuhiro, Tamaoki Norikazu, Ko Minoru S H", "reference": { "type": "PubMed", "id": "12490196", "url": "https://pubmed.ncbi.nlm.nih.gov/12490196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K411-1", "protein_name": "Presequence protease, mitochondrial", "gene_name": "Pitrm1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8K411", "url": "https://www.uniprot.org/uniprotkb/Q8K411" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12490196", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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gene encoding three steps of purine synthesis reveals use of an intronic polyadenylation signal without alternative exon usage.", "journal": "J. 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "The mouse prolactin gene family locus.", "journal": "Endocrinology", "date": "2003", "authors": "Wiemers Dustin O, Shao Long-Jiang, Ain Rupasri, Dai Guoli, Soares Michael J", "reference": { "type": "PubMed", "id": "12488360", "url": "https://pubmed.ncbi.nlm.nih.gov/12488360" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DAS4-1", "protein_name": "Prolactin-8A8", "gene_name": "Prl8a8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CJ42-1", "protein_name": "Prolactin-7B1", "gene_name": "Prl7b1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9DAZ2-1", "protein_name": "Prolactin-2B1", "gene_name": "Prl2b1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CGZ9-1", "protein_name": "Prolactin-7B1", "gene_name": "Prl7b1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CRB5-1", "protein_name": "Prolactin-7C1", "gene_name": "Prl7c1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus 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"date": "2004-01-09", "authors": "Watanabe Tatsuya, Miyatani Seiji, Katoh Iyoko, Kobayashi Shizuko, Ikawa Yoji", "reference": { "type": "PubMed", "id": "14684155", "url": "https://pubmed.ncbi.nlm.nih.gov/14684155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VHS2-1", "protein_name": "Protein crumbs homolog 1", "gene_name": "Crb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VHS2", "url": "https://www.uniprot.org/uniprotkb/Q8VHS2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.14684155", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Genet.", "date": "2013", "authors": "Alves Celso Henrique, Sanz Alicia Sanz, Park Bokyung, Pellissier Lucie P, Tanimoto Naoyuki, Beck Susanne C, Huber Gesine, Murtaza Mariyam, Richard Fabrice, Sridevi Gurubaran Iswariyaraja, Garcia Garrido Marina, Levelt Christiaan N, Rashbass Penny, Le Bivic Andr\u00e9, Seeliger Mathias W, Wijnholds Jan", "reference": { "type": "PubMed", "id": "23001562", "url": "https://pubmed.ncbi.nlm.nih.gov/23001562" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VHS2-1", "protein_name": "Protein crumbs homolog 1", "gene_name": "Crb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80YA8-1", "protein_name": "Protein crumbs homolog 2", "gene_name": "Crb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P30999-1", "protein_name": "Catenin delta-1", "gene_name": "Ctnnd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35599-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "Opn1mw", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VBX6-1", "protein_name": "Multiple PDZ domain protein", "gene_name": "Mpdz", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99NH2-1", "protein_name": "Partitioning defective 3 homolog", "gene_name": "Pard3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLB2-1", "protein_name": "Protein PALS1", "gene_name": "Pals1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15116-1", "protein_name": "Cadherin-2", "gene_name": "Cdh2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VHS2", "url": "https://www.uniprot.org/uniprotkb/Q8VHS2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23001562", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRB2 completes a fully expressed Crumbs complex in the Retinal Pigment Epithelium.", "journal": "Sci. Rep.", "date": "2015", "authors": "Paniagua Antonio E, Herranz-Mart\u00edn Sa\u00fal, Jimeno David, Jimeno \u00c1ngela M, L\u00f3pez-Benito Saray, Carlos Ar\u00e9valo Juan, Velasco Almudena, Aij\u00f3n Jos\u00e9, Lillo Concepci\u00f3n", "reference": { "type": "PubMed", "id": "26404741", "url": "https://pubmed.ncbi.nlm.nih.gov/26404741" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VHS2-1", "protein_name": "Protein crumbs homolog 1", "gene_name": "Crb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8QZT4-1", "protein_name": "Protein crumbs homolog 3", "gene_name": "Crb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLB2-1", "protein_name": "Protein PALS1", "gene_name": "Pals1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VHS2", "url": "https://www.uniprot.org/uniprotkb/Q8VHS2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": 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"Hypertension in mice lacking the proatrial natriuretic peptide convertase corin.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005", "authors": "Chan JC, Knudson O, Wu F, Morser J, Dole WP, Wu Q", "reference": { "type": "PubMed", "id": "15637153", "url": "https://pubmed.ncbi.nlm.nih.gov/15637153" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z319-1", "protein_name": "Atrial natriuretic peptide-converting enzyme", "gene_name": "Corin", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05125-1", "protein_name": "Natriuretic peptides A", "gene_name": "Nppa", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z319", "url": "https://www.uniprot.org/uniprotkb/Q9Z319" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15637153", "abstract": "", 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"Mol. Biol. Evol.", "date": "2001", "authors": "Volff J, K\u00f6rting C, Schartl M", "reference": { "type": "PubMed", "id": "11158386", "url": "https://pubmed.ncbi.nlm.nih.gov/11158386" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TN75-1", "protein_name": "Retrotransposon-derived protein PEG10", "gene_name": "Peg10", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TN75", "url": "https://www.uniprot.org/uniprotkb/Q7TN75" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11158386", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6.", "journal": "Genome Res.", "date": "2003", "authors": "Ono R, Shiura H, Aburatani H, Kohda T, Kaneko-Ishino T, Ishino F", "reference": { "type": "PubMed", "id": "12840045", "url": "https://pubmed.ncbi.nlm.nih.gov/12840045" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TN75-1", "protein_name": "Retrotransposon-derived protein PEG10", "gene_name": "Peg10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TN73-1", "protein_name": "N-acetylneuraminate (7)9-O-acetyltransferase", "gene_name": "Casd1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TN75", "url": "https://www.uniprot.org/uniprotkb/Q7TN75" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus 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gene, plays a crucial role in adipocyte differentiation.", "journal": "FEBS letters", "date": "2007-09-04", "authors": "Hishida Tomoaki, Naito Kumiko, Osada Shigehiro, Nishizuka Makoto, Imagawa Masayoshi", "reference": { "type": "PubMed", "id": "17707377", "url": "https://pubmed.ncbi.nlm.nih.gov/17707377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TN75-1", "protein_name": "Retrotransposon-derived protein PEG10", "gene_name": "Peg10", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TN75", "url": "https://www.uniprot.org/uniprotkb/Q7TN75" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17707377", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Biol. Chem.", "date": "2007", "authors": "Clark MB, Janicke M, Gottesbuhren U, Kleffmann T, Legge M, Poole ES, Tate WP", "reference": { "type": "PubMed", "id": "17942406", "url": "https://pubmed.ncbi.nlm.nih.gov/17942406" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TN75-1", "protein_name": "Retrotransposon-derived protein PEG10", "gene_name": "Peg10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q86TG7-1", "protein_name": "Retrotransposon-derived protein PEG10", "gene_name": "PEG10", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TN75", "url": "https://www.uniprot.org/uniprotkb/Q7TN75" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 370, "end_pos": 370, "sequence_org": "D", "sequence_mut": "A", "comment": "Inhibits proteolytic cleavage.", "evidence": [ { "database": "UniProtKB", 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of sense and antisense transcripts of the sushi-ichi-related retrotransposon--derived family during mouse placentogenesis.", "journal": "Retrovirology", "date": "2015", "authors": "Henke Christine, Strissel Pamela L, Schubert Maria-Theresa, Mitchell Megan, Stolt Claus C, Faschingbauer Florian, Beckmann Matthias W, Strick Reiner", "reference": { "type": "PubMed", "id": "25888968", "url": "https://pubmed.ncbi.nlm.nih.gov/25888968" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TN75-1", "protein_name": "Retrotransposon-derived protein PEG10", "gene_name": "Peg10", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q7TN75", "url": "https://www.uniprot.org/uniprotkb/Q7TN75" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25888968", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Gag protein PEG10 binds to RNA and regulates trophoblast stem cell lineage specification.", "journal": "PloS one", "date": "2019", "authors": "Abed M, Verschueren E, Budayeva H, Liu P, Kirkpatrick DS, Reja R, Kummerfeld SK, Webster JD, Gierke S, Reichelt M, Anderson KR, Newman RJ, Roose-Girma M, Modrusan Z, Pektas 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Circadian expression of hnRNP U, a nuclear multi-potent regulatory protein, in the murine suprachiasmatic nucleus.", "journal": "Neuroscience 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underlies circadian transcription of the Bmal1 gene.", "journal": "Molecular and cellular biology", "date": "2008-05", "authors": "Onishi Yoshiaki, Hanai Syuji, Ohno Tomoya, Hara Yasuhiro, Ishida Norio", "reference": { "type": "PubMed", "id": "18332112", "url": "https://pubmed.ncbi.nlm.nih.gov/18332112" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEK3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "Hnrnpu", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEK3", "url": "https://www.uniprot.org/uniprotkb/Q8VEK3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18332112", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zbtb7b engages the long noncoding RNA Blnc1 to drive brown and beige fat development and thermogenesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017", "authors": "Li S, Mi L, Yu L, Yu Q, Liu T, Wang GX, Zhao XY, Wu J, Lin JD", "reference": { "type": "PubMed", "id": "28784777", "url": "https://pubmed.ncbi.nlm.nih.gov/28784777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEK3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "Hnrnpu", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64321-1", "protein_name": "Zinc finger and BTB domain-containing protein 7B", "gene_name": "Zbtb7b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P46935-1", "protein_name": "E3 ubiquitin-protein ligase 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA-binding protein hnRNPU regulates multiple myeloma resistance to selinexor.", "journal": "Cancer letters", "date": "2024-01-01", "authors": "Wang Xin, Xu Juan, Li Qun, Zhang Yue, Lin Zhimei, Zhai Xinyu, Wang Fangfang, Huang Jingcao, Gao Qianwen, Wen Jingjing, Li Linfeng, Feng Yu, Luo Hongmei, Li Qian, Liu Xiang, Li Junying, Zhao Fei, Zhang Li, Niu Ting, Sun Chunyan, Zheng Yuhuan", "reference": { "type": "PubMed", "id": "37984724", "url": "https://pubmed.ncbi.nlm.nih.gov/37984724" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEK3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CircIRAK3 exerts negative feedback regulation on inflammation by binding to HNRNP U and destabilizing proinflammatory cytokine mRNA in osteoarthritis and chondrogenesis.", "journal": "International journal of biological macromolecules", "date": "2024-01", "authors": "Wen Xingzhao, Fang Guibin, Li Hongyi, Jiang Zongrui, Du Xue, Liao Zhuangyao, Liu Ruonan, Huang Guiwu, Meng Fangang, Liao Weiming, Zhang Zhiqi", "reference": { "type": "PubMed", "id": "38016613", "url": "https://pubmed.ncbi.nlm.nih.gov/38016613" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEK3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "Hnrnpu", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K4B2-1", "protein_name": "Interleukin-1 receptor-associated kinase 3", "gene_name": "Irak3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEK3", "url": "https://www.uniprot.org/uniprotkb/Q8VEK3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38016613", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "hnRNPU is required for spermatogonial stem cell pool establishment in mice.", "journal": "Cell reports", "date": "2024-04-23", "authors": "Wen Yujiao, Zhou Shumin, Gui Yiqian, Li Zeqing, Yin Lisha, Xu Wenchao, Feng Shenglei, Ma Xixiang, Gan Shiming, Xiong Mengneng, Dong Juan, Cheng Keren, Wang Xiaoli, Yuan Shuiqiao", "reference": { "type": "PubMed", "id": "38625792", "url": "https://pubmed.ncbi.nlm.nih.gov/38625792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEK3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "Hnrnpu", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEK3", "url": "https://www.uniprot.org/uniprotkb/Q8VEK3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38625792", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of HNRNPU in Skeletal Muscle Increases Intramuscular Infiltration of Ly6C Positive Cells, leading to Muscle Atrophy through Activation of NF-\u03baB Signaling.", "journal": "Advanced biology", "date": "2024-07", "authors": "Lee Eun-Joo, Charles Julia F, Sinha Indranil, Neppl Ronald L", "reference": { "type": "PubMed", "id": "38797891", "url": "https://pubmed.ncbi.nlm.nih.gov/38797891" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEK3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "Hnrnpu", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEK3", "url": "https://www.uniprot.org/uniprotkb/Q8VEK3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38797891", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CLAC: a novel Alzheimer amyloid plaque component derived from a transmembrane precursor, CLAC-P/collagen type XXV.", "journal": "EMBO J.", "date": "2002", "authors": "Hashimoto T, Wakabayashi T, Watanabe A, Kowa H, Hosoda R, Nakamura A, Kanazawa I, Arai T, Takio K, Mann DM, Iwatsubo T", "reference": { "type": "PubMed", "id": "11927537", "url": "https://pubmed.ncbi.nlm.nih.gov/11927537" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99MQ5-1", "protein_name": "Collagen 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the official journal of the Society for Neuroscience", "date": "2014", "authors": "Tanaka T, Wakabayashi T, Oizumi H, Nishio S, Sato T, Harada A, Fujii D, Matsuo Y, Hashimoto T, Iwatsubo T", "reference": { "type": "PubMed", "id": "24453327", "url": "https://pubmed.ncbi.nlm.nih.gov/24453327" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99MQ5-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "Col25a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99MQ5", "url": "https://www.uniprot.org/uniprotkb/Q99MQ5" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24453327", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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