[ { "title": "Deletion of Col15a1 Modulates the Tumour Extracellular Matrix and Leads to Increased Tumour Growth in the MMTV-PyMT Mouse Mammary Carcinoma Model.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Martinez-Nieto G, Heljasvaara R, Heikkinen A, Kaski HK, Devarajan R, Rinne O, Henriksson C, Thomson E, von Hertzen C, Miinalainen I, Ruotsalainen H, Pihlajaniemi T, Karppinen SM", "reference": { "type": "PubMed", "id": "34576139", "url": "https://pubmed.ncbi.nlm.nih.gov/34576139" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O35206-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "Col15a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O35206", "url": "https://www.uniprot.org/uniprotkb/O35206" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.34576139", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of mouse type XV collagen sequences and mapping of the corresponding gene to 4B1-3. 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Biol.", "date": "1998", "authors": "Wei N, Tsuge T, Serino G, Dohmae N, Takio K, Matsui M, Deng X W", "reference": { "type": "PubMed", "id": "9707402", "url": "https://pubmed.ncbi.nlm.nih.gov/9707402" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88544-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "Cops4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88543-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "Cops3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P61202-1", "protein_name": "COP9 signalosome complex subunit 2", "gene_name": "Cops2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99LD4-1", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "Gps1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BV13-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "Cops7b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CZ04-1", "protein_name": "COP9 signalosome complex subunit 7a", "gene_name": "Cops7a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88545-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "Cops6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35864-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "Cops5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VBV7-1", "protein_name": "COP9 signalosome complex subunit 8", "gene_name": "Cops8", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O88544", "url": "https://www.uniprot.org/uniprotkb/O88544" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9707402", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The synaptic proteins neurexins and neuroligins are widely expressed in the vascular system and contribute to its functions.", "journal": "Proc. 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Cell. 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and memory of female mice without inducing 20S proteasome activity.", "journal": "BMC neuroscience", "date": "2018", "authors": "Adelof J, Andersson M, Porritt M, Petersen A, Zetterberg M, Wiseman J, Hernebring M", "reference": { "type": "PubMed", "id": "30400847", "url": "https://pubmed.ncbi.nlm.nih.gov/30400847" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P97372-1", "protein_name": "Proteasome activator complex subunit 2", "gene_name": "Psme2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P97372", "url": "https://www.uniprot.org/uniprotkb/P97372" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30400847", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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potential role for PDGF-D in the progression of tubulointerstitial injury.", "journal": "J. Am. Soc. Nephrol.", "date": "2003", "authors": "Taneda Sekiko, Hudkins Kelly L, Topouzis Stavros, Gilbertson Debra G, Ophascharoensuk Vuddhidej, Truong Luan, Johnson Richard J, Alpers Charles E", "reference": { "type": "PubMed", "id": "14514732", "url": "https://pubmed.ncbi.nlm.nih.gov/14514732" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P31240-1", "protein_name": "Platelet-derived growth factor subunit B", "gene_name": "Pdgfb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P26618-1", "protein_name": "Platelet-derived growth factor receptor alpha", "gene_name": "Pdgfra", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9GZP0-1", "protein_name": "Platelet-derived growth factor D", "gene_name": "PDGFD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q925I7-1", "protein_name": "Platelet-derived growth factor D", "gene_name": "Pdgfd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05622-1", "protein_name": "Platelet-derived growth factor receptor 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"date": "1991", "authors": "Bonthron D T, Sultan P, Collins T", "reference": { "type": "PubMed", "id": "2045107", "url": "https://pubmed.ncbi.nlm.nih.gov/2045107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P31240-1", "protein_name": "Platelet-derived growth factor subunit B", "gene_name": "Pdgfb", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P31240", "url": "https://www.uniprot.org/uniprotkb/P31240" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2045107", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Chem.", "date": "1999", "authors": "Kawasaki K, Kuge O, Chang S C, Heacock P N, Rho M, Suzuki K, Nishijima M, Dowhan W", "reference": { "type": "PubMed", "id": "9880566", "url": "https://pubmed.ncbi.nlm.nih.gov/9880566" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BHF7-1", "protein_name": "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial", "gene_name": "Pgs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z2Z7-1", "protein_name": "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial", "gene_name": "PGS1", "tax_name": "Chinese hamster" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BHF7", "url": "https://www.uniprot.org/uniprotkb/Q8BHF7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9880566", "abstract": "", "glycosylation": [], "mutagenesis": 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Gene regulatory mechanisms", "date": "2018", "authors": "Chen L, Wang XY, Zhu JG, You LH, Wang X, Cui XW, Shi CM, Huang FY, Zhou YH, Yang L, Pang LX, Gao Y, Ji CB, Guo XR", "reference": { "type": "PubMed", "id": "29391195", "url": "https://pubmed.ncbi.nlm.nih.gov/29391195" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3UBG2-1", "protein_name": "PTB-containing, cubilin and LRP1-interacting protein", "gene_name": "Pid1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3UBG2", "url": "https://www.uniprot.org/uniprotkb/Q3UBG2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.29391195", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BZF8-1", "protein_name": "Phosphoglucomutase-like protein 5", "gene_name": "Pgm5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHX6-1", "protein_name": "Filamin-C", "gene_name": "Flnc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q702N8-1", "protein_name": "Xin actin-binding repeat-containing protein 1", "gene_name": "XIRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "B0R0B3-1", "protein_name": "Phosphoglucomutase-like protein 5", "gene_name": "pgm5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O70373-1", "protein_name": "Xin actin-binding repeat-containing protein 1", "gene_name": "Xirp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q15124-1", "protein_name": "Phosphoglucomutase-like protein 5", "gene_name": "PGM5", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BZF8", "url": 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utrophin.", "journal": "J. Biol. Chem.", "date": "1995", "authors": "Belkin AM, Burridge K", "reference": { "type": "PubMed", "id": "7890770", "url": "https://pubmed.ncbi.nlm.nih.gov/7890770" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BZF8-1", "protein_name": "Phosphoglucomutase-like protein 5", "gene_name": "Pgm5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZVR9-1", "protein_name": "Phosphoglucomutase-like protein 5", "gene_name": "Pgm5", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P11531-1", "protein_name": "Dystrophin", "gene_name": "Dmd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "G3V7L1-1", "protein_name": "Utrophin", "gene_name": "Utrn", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BZF8", "url": "https://www.uniprot.org/uniprotkb/Q8BZF8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7890770", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aczonin, a 550-kd putative scaffolding protein of presynaptic active zones, shares homology regions with rim and bassoon and binds profilin.", "journal": "J. Cell Biol.", "date": "1999", "authors": "Wang X, Kibschull M, Laue M M, Lichte B, Petrasch-Parwez E, Kilimann M W", "reference": { "type": "PubMed", "id": "10508862", "url": "https://pubmed.ncbi.nlm.nih.gov/10508862" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QYX7-1", "protein_name": "Protein piccolo", "gene_name": "Pclo", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9PU36-1", "protein_name": "Protein piccolo", "gene_name": "PCLO", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q9Y6V0-5", "protein_name": "Protein piccolo", "gene_name": "PCLO", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QYX7", "url": "https://www.uniprot.org/uniprotkb/Q9QYX7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10508862", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Piccolo, a Ca2+ sensor in pancreatic beta-cells. Involvement of cAMP-GEFII.Rim2.Piccolo complex in cAMP-dependent exocytosis.", "journal": "J. Biol. Chem.", "date": "2002", "authors": "Fujimoto K, Shibasaki T, Yokoi N, Kashima Y, Matsumoto M, Sasaki T, Tajima N, Iwanaga T, Seino S", "reference": { "type": "PubMed", "id": "12401793", "url": "https://pubmed.ncbi.nlm.nih.gov/12401793" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QYX7-1", "protein_name": "Protein piccolo", "gene_name": "Pclo", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EQZ6-1", "protein_name": "Rap guanine nucleotide exchange factor 4", "gene_name": "Rapgef4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14643-1", "protein_name": "Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1", "gene_name": "ITPR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46940-1", "protein_name": "Ras GTPase-activating-like protein IQGAP1", "gene_name": "IQGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice.", "journal": "Nature neuroscience", "date": "2015", "authors": "Morris M, Knudsen GM, Maeda S, Trinidad JC, Ioanoviciu A, Burlingame AL, Mucke L", "reference": { "type": "PubMed", "id": "26192747", "url": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RE1-Silencing Transcription Factor (Rest) is a Novel Regulator of Osteoblast Differentiation.", "journal": "Journal of cellular biochemistry", "date": "2015-09", "authors": "Liu Bo, Cheng Shaohong, Xing Weirong, Pourteymoor Sheila, Mohan Subburaman", "reference": { "type": "PubMed", "id": "25727884", "url": "https://pubmed.ncbi.nlm.nih.gov/25727884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VIG1-1", "protein_name": "RE1-silencing transcription factor", "gene_name": "Rest", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VIG1", "url": "https://www.uniprot.org/uniprotkb/Q8VIG1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25727884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": 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effects of the RE-1 silencing transcription factor on cortical networks are altered under ictogenic conditions in the mouse.", "journal": "Acta physiologica (Oxford, England)", "date": "2024-06", "authors": "Vitale Carmela, Natali Giulia, Cerullo Maria Sabina, Floss Thomas, Michetti Caterina, Grasselli Giorgio, Benfenati Fabio", "reference": { "type": "PubMed", "id": "38606882", "url": "https://pubmed.ncbi.nlm.nih.gov/38606882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VIG1-1", "protein_name": "RE1-silencing transcription factor", "gene_name": "Rest", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VIG1", "url": "https://www.uniprot.org/uniprotkb/Q8VIG1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38606882", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Identification of a hypo-glycanated murine syndecan-1 splice variant.", "journal": "J. Biol. Chem.", "date": "1999", "authors": "Romar\u00eds M, Coomans C, Ceulemans H, Bruystens A M, Vekemans S, David G", "reference": { "type": "PubMed", "id": "10373479", "url": "https://pubmed.ncbi.nlm.nih.gov/10373479" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18828-1", "protein_name": "Syndecan-1", "gene_name": "Sdc1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P18828", "url": "https://www.uniprot.org/uniprotkb/P18828" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10373479", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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