[ { "title": "Copy number variation and expression of exportin-4 associates with severity of fibrosis in metabolic associated fatty liver disease.", "journal": "EBioMedicine", "date": "2021", "authors": "Metwally M, Bayoumi A, Khan A, Adams LA, Aller R, Garcia-Monzon C, Arias-Loste MT, Bugianesi E, Miele L, Anna A, Latchoumanin O, Han S, Alenizi S, Sharkawy RE, Elattar A, Gallego-Duran R, Fischer J, Berg T, Liddle C, Romero-Gomez M, George J, Eslam M", "reference": { "type": "PubMed", "id": "34388518", "url": "https://pubmed.ncbi.nlm.nih.gov/34388518" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C0E2-1", "protein_name": "Exportin-4", "gene_name": "XPO4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9C0E2", "url": "https://www.uniprot.org/uniprotkb/Q9C0E2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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Genet.", "date": "1993", "authors": "Greig GM, Sharp CB, Carrel L, Willard HF", "reference": { "type": "PubMed", "id": "8268913", "url": "https://pubmed.ncbi.nlm.nih.gov/8268913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98169-1", "protein_name": "Zinc finger X-linked protein ZXDB", "gene_name": "ZXDB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98168-1", "protein_name": "Zinc finger X-linked protein ZXDA", "gene_name": "ZXDA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98169", "url": "https://www.uniprot.org/uniprotkb/P98169" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8268913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development.", "journal": "PLoS computational biology", "date": "2011", "authors": "Goke J, Jung M, Behrens S, Chavez L, O'Keeffe S, Timmermann B, Lehrach H, Adjaye J, Vingron M", "reference": { "type": "PubMed", "id": "22215994", "url": "https://pubmed.ncbi.nlm.nih.gov/22215994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96SZ4-1", "protein_name": "Zinc finger and SCAN domain-containing protein 10", "gene_name": "ZSCAN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60481-1", "protein_name": "Zinc finger protein ZIC 3", "gene_name": "ZIC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21709-1", "protein_name": "Ephrin type-A receptor 1", "gene_name": "EPHA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48431-1", "protein_name": "Transcription factor SOX-2", "gene_name": "SOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L190-1", "protein_name": "Developmental pluripotency-associated protein 4", "gene_name": "DPPA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJQ4-1", "protein_name": "Sal-like protein 4", "gene_name": "SALL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSC2-1", "protein_name": "Sal-like protein 1", "gene_name": "SALL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99814-1", "protein_name": "Endothelial PAS domain-containing protein 1", "gene_name": "EPAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09038-4", "protein_name": "Fibroblast growth factor 2", "gene_name": "FGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01860-1", "protein_name": "POU domain, class 5, transcription factor 1", "gene_name": "POU5F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZV8-1", "protein_name": "PR domain zinc finger protein 14", "gene_name": "PRDM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43474-3", "protein_name": "Krueppel-like factor 4", "gene_name": "KLF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40424-1", "protein_name": "Pre-B-cell leukemia transcription factor 1", "gene_name": "PBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJU5-1", "protein_name": "Forkhead box protein D3", "gene_name": "FOXD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40763-1", "protein_name": "Signal transducer and activator of transcription 3", "gene_name": "STAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13285-1", "protein_name": "Steroidogenic factor 1", "gene_name": "NR5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2N7-1", "protein_name": "Hypoxia-inducible factor 3-alpha", "gene_name": "HIF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Z2-1", "protein_name": "Protein lin-28 homolog A", "gene_name": "LIN28A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13385-1", "protein_name": "Protein Cripto", "gene_name": "CRIPTO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S0-1", "protein_name": "Homeobox protein NANOG", "gene_name": "NANOG", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96SZ4", "url": "https://www.uniprot.org/uniprotkb/Q96SZ4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22215994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]