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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cell polarity PTK7 receptor acts as a modulator of the chemotherapeutic response in acute myeloid leukemia and impairs clinical outcome.", "journal": "Blood", "date": "2010-09-30", "authors": "Prebet Thomas, Lhoumeau Anne-Catherine, Arnoulet Christine, Aulas Ana\u00efs, Marchetto Sylvie, Audebert St\u00e9phane, Puppo Francesca, Chabannon Christian, Sainty Danielle, Santoni Marie-Jos\u00e9e, Sebbagh Michael, Summerour Virginia, Huon Yannick, Shin Won-Sik, Lee Seung-Taek, Esterni Benjamin, Vey Norbert, Borg Jean-Paul", "reference": { "type": "PubMed", "id": "20558616", "url": "https://pubmed.ncbi.nlm.nih.gov/20558616" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13308-1", "protein_name": "Inactive tyrosine-protein kinase 7", "gene_name": "PTK7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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"authors": "Ji Jing, Qian Qilan, Cheng Wenhao, Ye Xiaoqing, Jing Aixin, Ma Shaojie, Ding Yuanyuan, Ma Xinhui, Wang Yasong, Sun Qian, Wang Xiujun, Chen Yulu, Zhu Lan, Yuan Qing, Xu Menghan, Qin Jingting, Ma Lin, Yang Jiayan, Zhang Meiqi, Geng Ting, Wang Sen, Wang Dan, Song Yizhuo, Zhang Boyu, Xu Yuting, Xu Linyu, Liu Shunfang, Liu Wei, Liu Bin", "reference": { "type": "PubMed", "id": "38740744", "url": "https://pubmed.ncbi.nlm.nih.gov/38740744" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13308-1", "protein_name": "Inactive tyrosine-protein kinase 7", "gene_name": "PTK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVH2-1", "protein_name": "Forkhead box protein P4", "gene_name": "FOXP4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13308", "url": "https://www.uniprot.org/uniprotkb/Q13308" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulating Effect of Cytochrome b(5) Overexpression on Human Breast Cancer Cells.", "journal": "Molecules (Basel, Switzerland)", "date": "2022", "authors": "Tong XY, Yang XZ, Gao SQ, Wang XJ, Wen GB, Lin YW", "reference": { "type": "PubMed", "id": "35889429", "url": "https://pubmed.ncbi.nlm.nih.gov/35889429" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P00167-1", "protein_name": "Cytochrome b5", "gene_name": "CYB5A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P00167", "url": "https://www.uniprot.org/uniprotkb/P00167" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35889429", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteomics, modeling, and fluorescence assays delineate cytochrome b5 residues involved in binding and stimulation of cytochrome P450 17A1 17,20-lyase.", "journal": "The Journal of biological chemistry", "date": "2024-01-25", "authors": "Tateishi Yasuhiro, Webb Stephany N, Li Bian, Liu Lu, Lindsey Rose Kristie, Leser Micheal, Patel Purvi, Guengerich F Peter", "reference": { "type": "PubMed", "id": "38280431", "url": "https://pubmed.ncbi.nlm.nih.gov/38280431" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P00167-1", "protein_name": "Cytochrome b5", "gene_name": "CYB5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05093-1", "protein_name": "Steroid 17-alpha-hydroxylase/17,20 lyase", "gene_name": "CYP17A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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Sequential studies on human liver cytochrome b5.", "journal": "J. 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"Mitogen-activated protein kinase kinase kinase 7", "gene_name": "MAP3K7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8C0E3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM47", "gene_name": "Trim47", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62073-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 7", "gene_name": "Map3k7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96LD4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM47", "gene_name": "TRIM47", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80TQ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase CYLD", "gene_name": "Cyld", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQC7", "url": "https://www.uniprot.org/uniprotkb/Q9NQC7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 158, "end_pos": 158, 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No effect on induction of phosphorylation; when associated with R-34.", "evidence": [ { "database": "UniProtKB", "id": "Q62073", "url": "https://www.uniprot.org/uniprotkb/Q62073" }, { "database": "PubMed", "id": "29291351", "url": "https://pubmed.ncbi.nlm.nih.gov/29291351" } ], "uniprot_canonical_ac": "Q62073-1" } ], "record_id": "pubmed.29291351", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reversal of CYLD phosphorylation as a novel therapeutic approach for adult T-cell leukemia/lymphoma (ATLL).", "journal": "Cell death & disease", "date": "2020-02-05", "authors": "Xu Xin, Kalac Matko, Markson Michael, Chan Mark, Brody Joshua D, Bhagat Govind, Ang Rosalind L, Legarda Diana, Justus Scott J, Liu Feng, Li Qingshan, Xiong Huabao, Ting Adrian T", "reference": { "type": "PubMed", "id": "32024820", "url": "https://pubmed.ncbi.nlm.nih.gov/32024820" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQC7-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase CYLD", "gene_name": "CYLD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQC7", "url": "https://www.uniprot.org/uniprotkb/Q9NQC7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 418, "end_pos": 418, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9NQC7", "url": "https://www.uniprot.org/uniprotkb/Q9NQC7" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "15870263", "url": "https://pubmed.ncbi.nlm.nih.gov/15870263" }, { "database": "PRO", "id": "Q9NQC7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q9NQC7" }, { "database": "iPTMnet", "id": "Q9NQC7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9NQC7" }, { "database": "PubMed", "id": "19481526", "url": "https://pubmed.ncbi.nlm.nih.gov/19481526" }, { "database": "PubMed", "id": "24614225", "url": "https://pubmed.ncbi.nlm.nih.gov/24614225" }, { "database": "PubMed", "id": "24961988", "url": "https://pubmed.ncbi.nlm.nih.gov/24961988" }, { "database": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "O-Acetylated Chemical Reporters of Glycosylation Can Display Metabolism-Dependent Background Labeling of Proteins but Are Generally Reliable Tools for the Identification of Glycoproteins.", "journal": "Frontiers in chemistry", "date": "2020", "authors": "Darabedian N, Yang B, Ding R, Cutolo G, Zaro BW, Woo CM, Pratt MR", "reference": { "type": "PubMed", "id": "32411667", "url": "https://pubmed.ncbi.nlm.nih.gov/32411667" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQC7-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase CYLD", "gene_name": "CYLD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15628-1", "protein_name": "Tumor necrosis factor receptor type 1-associated DEATH domain protein", "gene_name": "TRADD", "tax_name": "Human" }, { "uniprot_canonical_ac": 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