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membrane.", "journal": "The Journal of biological chemistry", "date": "1998-03-20", "authors": "Itzhaki H, Naveh L, Lindahl M, Cook M, Adam Z", "reference": { "type": "PubMed", "id": "9507020", "url": "https://pubmed.ncbi.nlm.nih.gov/9507020" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22609-1", "protein_name": "Protease Do-like 1, chloroplastic", "gene_name": "DEGP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22609", "url": "https://www.uniprot.org/uniprotkb/O22609" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9507020", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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A reversibly autoglycosylated arabidopsis protein implicated in cell wall biosynthesis.", "journal": "Plant Physiol.", "date": "1998", "authors": "Delgado I J, Wang Z, de Rocher A, Keegstra K, Raikhel N V", "reference": { "type": "PubMed", "id": "9536051", "url": "https://pubmed.ncbi.nlm.nih.gov/9536051" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22666-1", "protein_name": "UDP-arabinopyranose mutase 3", "gene_name": "RGP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRT9-1", "protein_name": "UDP-arabinopyranose mutase 1", "gene_name": "RGP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFW1-1", "protein_name": "UDP-arabinopyranose mutase 2", "gene_name": "RGP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22666", "url": "https://www.uniprot.org/uniprotkb/O22666" } ], "common_name": "Mouse-ear cress", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis \u03bc-adaptin subunit AP1M of adaptor protein complex 1 mediates late secretory and vacuolar traffic and is required for growth.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-06-18", "authors": "Park Misoon, Song Kyungyoung, Reichardt Ilka, Kim Hyeran, Mayer Ulrike, Stierhof York-Dieter, Hwang Inhwan, J\u00fcrgens Gerd", "reference": { "type": "PubMed", "id": "23733933", "url": "https://pubmed.ncbi.nlm.nih.gov/23733933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22715-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22715", "url": "https://www.uniprot.org/uniprotkb/O22715" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana 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Zhao Xin-Ying, Zhou Liang-Zi, Huang Guo-Qiang, Feng Chong, Zhang Yan", "reference": { "type": "PubMed", "id": "23766365", "url": "https://pubmed.ncbi.nlm.nih.gov/23766365" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22715-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22715", "url": "https://www.uniprot.org/uniprotkb/O22715" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23766365", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Biol.", "date": "2006", "authors": "Chen Zhongying, Hartmann H Andreas, Wu Ming-Jing, Friedman Erin J, Chen Jin-Gui, Pulley Matthew, Schulze-Lefert Paul, Panstruga Ralph, Jones Alan M", "reference": { "type": "PubMed", "id": "16525893", "url": "https://pubmed.ncbi.nlm.nih.gov/16525893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22752-1", "protein_name": "MLO-like protein 7", "gene_name": "MLO7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22752", "url": "https://www.uniprot.org/uniprotkb/O22752" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16525893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Natl. Acad. Sci. U.S.A.", "date": "2002", "authors": "Faik Ahmed, Price Nicholas J, Raikhel Natasha V, Keegstra Kenneth", "reference": { "type": "PubMed", "id": "12032363", "url": "https://pubmed.ncbi.nlm.nih.gov/12032363" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22775-1", "protein_name": "Xyloglucan 6-xylosyltransferase 2", "gene_name": "XXT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81007-1", "protein_name": "Putative glycosyltransferase 7", "gene_name": "GT7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZG1-1", "protein_name": "Glycosyltransferase 6", "gene_name": "GT6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LF80-1", "protein_name": "Probable xyloglucan 6-xylosyltransferase 3", "gene_name": "XXT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9U0-1", "protein_name": "Xyloglucan 6-xylosyltransferase 4", "gene_name": "XXT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CA75-1", "protein_name": "Probable xyloglucan 6-xylosyltransferase 5", "gene_name": "XXT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZJ3-1", "protein_name": "Xyloglucan 6-xylosyltransferase 1", "gene_name": "XXT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22775", "url": "https://www.uniprot.org/uniprotkb/O22775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12032363", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Disrupting two Arabidopsis thaliana xylosyltransferase genes results in plants deficient in xyloglucan, a major primary cell wall component.", "journal": "The Plant cell", "date": "2008-06", "authors": "Cavalier David M, Lerouxel Olivier, Neumetzler Lutz, Yamauchi Kazuchika, Reinecke Antje, Freshour Glenn, Zabotina Olga A, Hahn Michael G, Burgert Ingo, Pauly Markus, Raikhel Natasha V, Keegstra Kenneth", "reference": { "type": "PubMed", "id": "18544630", "url": "https://pubmed.ncbi.nlm.nih.gov/18544630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22775-1", "protein_name": "Xyloglucan 6-xylosyltransferase 2", "gene_name": "XXT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZJ3-1", "protein_name": "Xyloglucan 6-xylosyltransferase 1", "gene_name": "XXT1", "tax_name": "Mouse-ear cress" } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis.", "journal": "Plant J.", "date": "2008", "authors": "Zabotina Olga A, van de Ven Wilhelmina T G, Freshour Glenn, Drakakaki Georgia, Cavalier David, Mouille Gregory, Hahn Michael G, Keegstra Kenneth, Raikhel Natasha V", "reference": { "type": "PubMed", "id": "18557833", "url": "https://pubmed.ncbi.nlm.nih.gov/18557833" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22775-1", "protein_name": "Xyloglucan 6-xylosyltransferase 2", "gene_name": "XXT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CA75-1", "protein_name": "Probable xyloglucan 6-xylosyltransferase 5", "gene_name": "XXT5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZJ3-1", "protein_name": "Xyloglucan 6-xylosyltransferase 1", "gene_name": "XXT1", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci.", "journal": "PLoS Genet.", "date": "2014", "authors": "Liu Zhang-Wei, Shao Chang-Rong, Zhang Cui-Jun, Zhou Jin-Xing, Zhang Su-Wei, Li Lin, Chen She, Huang Huan-Wei, Cai Tao, He Xin-Jian", "reference": { "type": "PubMed", "id": "24465213", "url": "https://pubmed.ncbi.nlm.nih.gov/24465213" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22781-1", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "gene_name": "SUVH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84WV6-1", "protein_name": "Protein MICRORCHIDIA 1", "gene_name": "MORC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94A79-1", "protein_name": "Protein DEFECTIVE IN MERISTEM SILENCING 3", "gene_name": "DMS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY05-1", "protein_name": "SWI/SNF complex subunit SWI3D", "gene_name": "SWI3D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56Y74-1", "protein_name": "Protein MICRORCHIDIA 6", "gene_name": "MORC6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5FV35-1", "protein_name": "Protein MICRORCHIDIA 2", "gene_name": "MORC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIW2-1", "protein_name": "Protein CHROMATIN REMODELING 35", "gene_name": "DRD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0G7-1", "protein_name": "Histone-lysine N-methyltransferase family member SUVH9", "gene_name": "SUVH9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24465213", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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Biol.", "date": "2000", "authors": "Naested H, Frandsen G I, Jauh G Y, Hernandez-Pinzon I, Nielsen H B, Murphy D J, Rogers J C, Mundy J", "reference": { "type": "PubMed", "id": "11197322", "url": "https://pubmed.ncbi.nlm.nih.gov/11197322" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22788-1", "protein_name": "Probable peroxygenase 3", "gene_name": "PXG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81270-1", "protein_name": "Peroxygenase 1", "gene_name": "PXG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAB8-1", "protein_name": "Probable peroxygenase 5", "gene_name": "PXG5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLN9-1", "protein_name": "Peroxygenase 2", "gene_name": "PXG2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B3H7A9-1", "protein_name": "Probable peroxygenase 7", "gene_name": "PXG7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing.", "journal": "PLoS genetics", "date": "2013-06", "authors": "Bentolila St\u00e9phane, Oh Julyun, Hanson Maureen R, Bukowski Robert", "reference": { "type": "PubMed", "id": "23818871", "url": "https://pubmed.ncbi.nlm.nih.gov/23818871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22793-1", "protein_name": "Multiple organellar RNA editing factor 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editing factor 5, chloroplastic/mitochondrial", "gene_name": "MORF5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKA5-1", "protein_name": "Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial", "gene_name": "MORF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPZ1-1", "protein_name": "Multiple organellar RNA editing factor 9, chloroplastic", "gene_name": "MORF9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22793", "url": "https://www.uniprot.org/uniprotkb/O22793" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23818871", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2014", "authors": "Zhang Fan, Tang Weijiang, Hedtke Boris, Zhong Linlin, Liu Lin, Peng Lianwei, Lu Congming, Grimm Bernhard, Lin Rongcheng", "reference": { "type": "PubMed", "id": "24497494", "url": "https://pubmed.ncbi.nlm.nih.gov/24497494" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22793-1", "protein_name": "Multiple organellar RNA editing factor 2, chloroplastic", "gene_name": "MORF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKA5-1", "protein_name": "Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial", "gene_name": "MORF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPZ1-1", "protein_name": "Multiple organellar RNA editing factor 9, chloroplastic", "gene_name": "MORF9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22793", "url": "https://www.uniprot.org/uniprotkb/O22793" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24497494", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana.", "journal": "J. Biol. Chem.", "date": "2015", "authors": "Zehrmann Anja, H\u00e4rtel Barbara, Glass Franziska, Bayer-Cs\u00e1sz\u00e1r Eszter, Obata Toshihiro, Meyer Etienne, Brennicke Axel, Takenaka Mizuki", "reference": { "type": "PubMed", "id": "25583991", "url": "https://pubmed.ncbi.nlm.nih.gov/25583991" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22793-1", "protein_name": "Multiple organellar RNA editing factor 2, chloroplastic", "gene_name": "MORF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48582-1", "protein_name": "Multiple organellar RNA editing factor 4, mitochondrial", "gene_name": "MORF4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82169-1", "protein_name": "Multiple organellar RNA editing factor 6, mitochondrial", "gene_name": "MORF6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAH0-1", "protein_name": "Multiple organellar RNA editing factor 7, mitochondrial", "gene_name": "MORF7; RIP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84JZ6-1", "protein_name": "Multiple organellar RNA editing factor 3, mitochondrial", "gene_name": "MORF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49429-1", "protein_name": "Multiple organellar RNA editing factor 1, mitochondrial", "gene_name": "MORF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C7Y2-1", "protein_name": "Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial", "gene_name": "MORF5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKA5-1", "protein_name": "Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial", "gene_name": "MORF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPZ1-1", "protein_name": "Multiple organellar RNA editing factor 9, chloroplastic", "gene_name": "MORF9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22793", "url": "https://www.uniprot.org/uniprotkb/O22793" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25583991", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A zinc finger motif-containing protein is essential for chloroplast RNA editing.", "journal": "PLoS Genet.", "date": "2015", "authors": "Sun Tao, Shi Xiaowen, Friso Giulia, Van Wijk Klaas, Bentolila Stephane, Hanson Maureen R", "reference": { "type": "PubMed", "id": "25768119", "url": "https://pubmed.ncbi.nlm.nih.gov/25768119" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22793-1", "protein_name": "Multiple organellar RNA editing factor 2, chloroplastic", "gene_name": "MORF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LN01-1", "protein_name": "Pentatricopeptide repeat-containing protein At1g08070, chloroplastic", "gene_name": "OTP82; PCMP-H12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S9K3-1", "protein_name": "Zinc finger protein VAR3, chloroplastic", "gene_name": "VAR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKA5-1", "protein_name": "Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial", "gene_name": "MORF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L440-1", "protein_name": "Organelle RRM domain-containing protein 1, chloroplastic", "gene_name": "ORRM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WQW5-1", "protein_name": "Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial", "gene_name": "PCMP-H51", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22793", "url": "https://www.uniprot.org/uniprotkb/O22793" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25768119", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PPR protein PDM1/SEL1 is involved in RNA editing and splicing of plastid genes in Arabidopsis thaliana.", "journal": "Photosyn. Res.", "date": "2015", "authors": "Zhang Hong-Dao, Cui Yong-Lan, Huang Chao, Yin Qian-Qian, Qin Xue-Mei, Xu Te, He Xiao-Fang, Zhang Yi, Li Zi-Ran, Yang Zhong-Nan", "reference": { "type": "PubMed", "id": "26123918", "url": "https://pubmed.ncbi.nlm.nih.gov/26123918" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22793-1", "protein_name": "Multiple organellar RNA editing factor 2, chloroplastic", "gene_name": "MORF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKA5-1", "protein_name": "Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial", "gene_name": "MORF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WNP3-1", "protein_name": "Pentatricopeptide repeat-containing protein At4g18520, chloroplastic", "gene_name": "PCMP-A2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPZ1-1", "protein_name": "Multiple organellar RNA editing factor 9, chloroplastic", "gene_name": "MORF9", "tax_name": 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Natl. Acad. Sci. U.S.A.", "date": "1997", "authors": "Babiychuk E, Fuangthong M, Van Montagu M, Inz\u00e9 D, Kushnir S", "reference": { "type": "PubMed", "id": "9356517", "url": "https://pubmed.ncbi.nlm.nih.gov/9356517" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22793-1", "protein_name": "Multiple organellar RNA editing factor 2, chloroplastic", "gene_name": "MORF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22873-1", "protein_name": "bZIP transcription factor 18", "gene_name": "BZIP18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93WI0-1", "protein_name": "Rhodanese-like/PpiC domain-containing protein 12, chloroplastic", "gene_name": "F7K24.120", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22793", "url": "https://www.uniprot.org/uniprotkb/O22793" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9356517", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High throughput identification of potential Arabidopsis mitogen-activated protein kinases substrates.", "journal": "Mol. Cell. Proteomics", "date": "2005", "authors": "Feilner Tanja, Hultschig Claus, Lee Justin, Meyer Svenja, Immink Richard G H, Koenig Andrea, Possling Alexandra, Seitz Harald, Beveridge Allan, Scheel Dierk, Cahill Dolores J, Lehrach Hans, Kreutzberger J\u00fcrgen, Kersten Birgit", "reference": { "type": "PubMed", "id": "16009969", "url": "https://pubmed.ncbi.nlm.nih.gov/16009969" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22806-1", "protein_name": "Mitotic spindle checkpoint protein BUBR1", "gene_name": "BUBR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SK08-1", "protein_name": "LOB domain-containing protein 11", "gene_name": "LBD11", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22806", "url": "https://www.uniprot.org/uniprotkb/O22806" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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Paganelli Laetitia, Lecomte Philippe, Deslandes Laurent, Quentin Micha\u00ebl, Pecrix Yann, Le Bris Manuel, Marfaing Nicolas, Abad Pierre, Favery Bruno", "reference": { "type": "PubMed", "id": "19710914", "url": "https://pubmed.ncbi.nlm.nih.gov/19710914" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22806-1", "protein_name": "Mitotic spindle checkpoint protein BUBR1", "gene_name": "BUBR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJN8-1", "protein_name": "Mitotic checkpoint protein BUB3.1", "gene_name": "BUB3.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU93-1", "protein_name": "Mitotic spindle checkpoint protein MAD2", "gene_name": "MAD2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22806", "url": "https://www.uniprot.org/uniprotkb/O22806" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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biological chemistry", "date": "2003-02-21", "authors": "Quiel Juan A, Bender Judith", "reference": { "type": "PubMed", "id": "12475971", "url": "https://pubmed.ncbi.nlm.nih.gov/12475971" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22822-1", "protein_name": "UDP-glycosyltransferase 74F2", "gene_name": "UGT74F2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22820-1", "protein_name": "Flavonol 7-O-beta-glucosyltransferase UGT74F1", "gene_name": "UGT74F1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22822", "url": "https://www.uniprot.org/uniprotkb/O22822" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12475971", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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storage.", "journal": "The Journal of biological chemistry", "date": "2008-05-30", "authors": "Eudes Aymerick, Bozzo Gale G, Waller Jeffrey C, Naponelli Valeria, Lim Eng-Kiat, Bowles Dianna J, Gregory Jesse F, Hanson Andrew D", "reference": { "type": "PubMed", "id": "18385129", "url": "https://pubmed.ncbi.nlm.nih.gov/18385129" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22822-1", "protein_name": "UDP-glycosyltransferase 74F2", "gene_name": "UGT74F2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22820-1", "protein_name": "Flavonol 7-O-beta-glucosyltransferase UGT74F1", "gene_name": "UGT74F1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LR44-1", "protein_name": "UDP-glycosyltransferase 75B1", "gene_name": "ATDOA2; UGT75B1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22822", "url": 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encoding a salicylic acid (SA) methyltransferase and a SA glucosyltransferase, respectively, in Arabidopsis plants with altered defense responses.", "journal": "Mol. 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Bot.", "date": "2008", "authors": "Singh Prashant, Kaloudas Dimitrios, Raines Christine A", "reference": { "type": "PubMed", "id": "18974062", "url": "https://pubmed.ncbi.nlm.nih.gov/18974062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22914-1", "protein_name": "Calvin cycle protein CP12-1, chloroplastic", "gene_name": "CP12-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZP9-1", "protein_name": "Calvin cycle protein CP12-2, chloroplastic", "gene_name": "CP12-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9K2-1", "protein_name": "Calvin cycle protein CP12-3, chloroplastic", "gene_name": "CP12-3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18974062", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } 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Alessandro, Valerio Concetta, Lamba Doriano, Pupillo Paolo, Trost Paolo, Sparla Francesca", "reference": { "type": "PubMed", "id": "20399532", "url": "https://pubmed.ncbi.nlm.nih.gov/20399532" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22914-1", "protein_name": "Calvin cycle protein CP12-1, chloroplastic", "gene_name": "CP12-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZP9-1", "protein_name": "Calvin cycle protein CP12-2, chloroplastic", "gene_name": "CP12-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9K2-1", "protein_name": "Calvin cycle protein CP12-3, chloroplastic", "gene_name": "CP12-3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana 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Deyholos Michael K", "reference": { "type": "PubMed", "id": "18839316", "url": "https://pubmed.ncbi.nlm.nih.gov/18839316" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22921-1", "protein_name": "Probable WRKY transcription factor 25", "gene_name": "WRKY25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8P5-1", "protein_name": "Probable WRKY transcription factor 33", "gene_name": "WRKY33", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22921", "url": "https://www.uniprot.org/uniprotkb/O22921" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18839316", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis sigma factor binding proteins are activators of the WRKY33 transcription factor in plant defense.", "journal": "Plant Cell", "date": "2011", "authors": "Lai Zhibing, Li Ying, Wang Fei, Cheng Yuan, Fan Baofang, Yu Jing-Quan, Chen Zhixiang", "reference": { "type": "PubMed", "id": "21990940", "url": "https://pubmed.ncbi.nlm.nih.gov/21990940" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22921-1", "protein_name": "Probable WRKY transcription factor 25", "gene_name": "WRKY25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80669-1", "protein_name": "Sigma factor binding protein 2, chloroplastic", "gene_name": "SIB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDH1-1", "protein_name": "Sigma factor binding protein 1, chloroplastic", "gene_name": "SIB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S8P5-1", "protein_name": 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[] } ] }, { "title": "Induction of the arginine decarboxylase ADC2 gene provides evidence for the involvement of polyamines in the wound response in Arabidopsis.", "journal": "Plant Physiol.", "date": "2002", "authors": "Perez-Amador Miguel A, Leon Jose, Green Pamela J, Carbonell Juan", "reference": { "type": "PubMed", "id": "12428010", "url": "https://pubmed.ncbi.nlm.nih.gov/12428010" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23141-1", "protein_name": "Arginine decarboxylase 2", "gene_name": "ADC2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23141", "url": "https://www.uniprot.org/uniprotkb/O23141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12428010", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Commun.", "date": "2017", "authors": "Maruri-L\u00f3pez Israel, Jim\u00e9nez-Bremont Juan F", "reference": { "type": "PubMed", "id": "28109885", "url": "https://pubmed.ncbi.nlm.nih.gov/28109885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23141-1", "protein_name": "Arginine decarboxylase 2", "gene_name": "ADC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SI64-1", "protein_name": "Arginine decarboxylase 1, chloroplastic", "gene_name": "ADC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23141", "url": "https://www.uniprot.org/uniprotkb/O23141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28109885", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Biol.", "date": "2001", "authors": "Sander L, Child R, Ulvskov P, Albrechtsen M, Borkhardt B", "reference": { "type": "PubMed", "id": "11485203", "url": "https://pubmed.ncbi.nlm.nih.gov/11485203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23147-1", "protein_name": "Polygalacturonase ADPG1", "gene_name": "ADPG1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23147", "url": "https://www.uniprot.org/uniprotkb/O23147" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11485203", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of polygalacturonases and evidence to support their role during cell separation processes in Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2007", "authors": "Gonz\u00e1lez-Carranza Zinnia H, Elliott Katherine A, Roberts Jeremy A", "reference": { "type": "PubMed", "id": "17928369", "url": "https://pubmed.ncbi.nlm.nih.gov/17928369" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23147-1", "protein_name": "Polygalacturonase ADPG1", "gene_name": "ADPG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22818-1", "protein_name": "Probable polygalacturonase At2g43860", "gene_name": "F18O19.3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RY29-1", "protein_name": "Polygalacturonase ADPG2", "gene_name": "ADPG2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AJ5-1", "protein_name": "Probable polygalacturonase At1g80170", "gene_name": "F18B13.25; F18B13_25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SFB7-1", "protein_name": "Polygalacturonase QRT2", "gene_name": "QRT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Ogawa Mikihiro, Kay Pippa, Wilson Sarah, Swain Stephen M", "reference": { "type": "PubMed", "id": "19168715", "url": "https://pubmed.ncbi.nlm.nih.gov/19168715" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23147-1", "protein_name": "Polygalacturonase ADPG1", "gene_name": "ADPG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q949Z1-1", "protein_name": "Polygalacturonase At1g48100", "gene_name": "ECT7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RY29-1", "protein_name": "Polygalacturonase ADPG2", "gene_name": "ADPG2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SFB7-1", "protein_name": "Polygalacturonase QRT2", "gene_name": "QRT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23147", "url": "https://www.uniprot.org/uniprotkb/O23147" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19168715", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 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