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Tsuhara Yumi, Kawashima Mika, Suzuki Kumiko, Muto Shu, Matsui Minami", "reference": { "type": "PubMed", "id": "12787254", "url": "https://pubmed.ncbi.nlm.nih.gov/12787254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04479-1", "protein_name": "Protein ASYMMETRIC LEAVES 2", "gene_name": "AS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBW3-1", "protein_name": "LOB domain-containing protein 12", "gene_name": "LBD12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKZ3-1", "protein_name": "LOB domain-containing protein 36", "gene_name": "LBD36", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04479", "url": "https://www.uniprot.org/uniprotkb/O04479" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12787254", "abstract": "", 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"Xu Lin, Xu Yi, Dong Aiwu, Sun Yue, Pi Limin, Xu Yuquan, Huang Hai", "reference": { "type": "PubMed", "id": "12874130", "url": "https://pubmed.ncbi.nlm.nih.gov/12874130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04479-1", "protein_name": "Protein ASYMMETRIC LEAVES 2", "gene_name": "AS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80931-1", "protein_name": "Transcription factor AS1", "gene_name": "AS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42371-1", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "gene_name": "ERECTA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04479", "url": "https://www.uniprot.org/uniprotkb/O04479" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12874130", 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"gene_name": "AS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80931-1", "protein_name": "Transcription factor AS1", "gene_name": "AS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SG02-1", "protein_name": "RNA-dependent RNA polymerase 6", "gene_name": "RDR6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04479", "url": "https://www.uniprot.org/uniprotkb/O04479" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16006579", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"uniprot_canonical_ac": "O04482-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 2", "gene_name": "UCH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JAU2-1", "protein_name": "SAC3 family protein B", "gene_name": "SAC3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82659-1", "protein_name": "Probable calcium-binding protein CML20", "gene_name": "CML20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQR8-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3 homolog B", "gene_name": "RPN3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGW3-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 8 homolog A", "gene_name": "RPN12A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWE6-1", "protein_name": "Enhanced ethylene response protein 5", "gene_name": "EER5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIR8-1", "protein_name": "Protein DELETION OF SUV3 SUPPRESSOR 1(I)", "gene_name": "DSS1(I)", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAF4-1", "protein_name": "Nuclear pore complex protein NUP1", "gene_name": "NUP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL96-1", "protein_name": "Protein DSS1 HOMOLOG ON CHROMOSOME V", "gene_name": "DSS1(V)", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFF2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase", "gene_name": "UCH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNU4-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3 homolog A", "gene_name": "RPN3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHY0-1", "protein_name": "Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B", "gene_name": "RPN12B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04482", "url": "https://www.uniprot.org/uniprotkb/O04482" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22951400", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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a nitrate reductase-null mutant of Arabidopsis.", "journal": "Plant Physiol.", "date": "2004", "authors": "Wang Rongchen, Tischner Rudolf, Guti\u00e9rrez Rodrigo A, Hoffman Maren, Xing Xiujuan, Chen Mingsheng, Coruzzi Gloria, Crawford Nigel M", "reference": { "type": "PubMed", "id": "15333754", "url": "https://pubmed.ncbi.nlm.nih.gov/15333754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04499-1", "protein_name": "2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1", "gene_name": "PGM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4I8M8-1", "protein_name": "2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2", "gene_name": "gpmA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LM13-1", "protein_name": "2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1", "gene_name": "gpmA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04499", "url": "https://www.uniprot.org/uniprotkb/O04499" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15333754", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2011-10", "authors": "Zhao Zhixin, Assmann Sarah M", "reference": { "type": "PubMed", "id": "21813794", "url": "https://pubmed.ncbi.nlm.nih.gov/21813794" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04499-1", "protein_name": "2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1", "gene_name": "PGM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9K1-1", "protein_name": "Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2", "gene_name": "PGM2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04499", "url": "https://www.uniprot.org/uniprotkb/O04499" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Xyloglucan O-acetyltransferases from Arabidopsis thaliana and Populus trichocarpa catalyze acetylation of fucosylated galactose residues on xyloglucan side chains.", "journal": "Planta", "date": "2018-11", "authors": "Zhong Ruiqin, Cui Dongtao, Ye Zheng-Hua", "reference": { "type": "PubMed", "id": "30083810", "url": "https://pubmed.ncbi.nlm.nih.gov/30083810" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04523-1", "protein_name": "Xyloglucan O-acetyltransferase 1", "gene_name": "AXY4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY46-1", "protein_name": "Xylan O-acetyltransferase 1", "gene_name": "ESK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LRS2-1", "protein_name": "xyloglucan O-acetyltransferase 2", "gene_name": "AXY4L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9N9-1", "protein_name": "Protein ALTERED XYLOGLUCAN 9", "gene_name": "AXY9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04523", "url": 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Chem.", "date": "1999", "authors": "Maidment J M, Moore D, Murphy G P, Murphy G, Clark I M", "reference": { "type": "PubMed", "id": "10574937", "url": "https://pubmed.ncbi.nlm.nih.gov/10574937" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04529-1", "protein_name": "Metalloendoproteinase 2-MMP", "gene_name": "2MMP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23507-1", "protein_name": "Metalloendoproteinase 1-MMP", "gene_name": "1MMP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUJ5-1", "protein_name": "Metalloendoproteinase 5-MMP", "gene_name": "5MMP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWW6-1", "protein_name": "Metalloendoproteinase 4-MMP", "gene_name": "4MMP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5XF51-1", "protein_name": "Metalloendoproteinase 3-MMP", "gene_name": "3MMP", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 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[] } ] }, { "title": "Mutation of the matrix metalloproteinase At2-MMP inhibits growth and causes late flowering and early senescence in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2002-02-15", "authors": "Golldack Dortje, Popova Olga V, Dietz Karl-Josef", "reference": { "type": "PubMed", "id": "11726650", "url": "https://pubmed.ncbi.nlm.nih.gov/11726650" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04529-1", "protein_name": "Metalloendoproteinase 2-MMP", "gene_name": "2MMP", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04529", "url": "https://www.uniprot.org/uniprotkb/O04529" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11726650", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GCR1, the putative Arabidopsis G protein-coupled receptor gene is cell cycle-regulated, and its overexpression abolishes seed dormancy and shortens time to flowering.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2002-04-02", "authors": "Colucci Gabriella, Apone Fabio, Alyeshmerni Nicole, Chalmers Derek, Chrispeels Maarten J", "reference": { "type": "PubMed", "id": "11930019", "url": "https://pubmed.ncbi.nlm.nih.gov/11930019" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04714-1", "protein_name": "G protein-coupled 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cell", "date": "2004-06", "authors": "Pandey Sona, Assmann Sarah M", "reference": { "type": "PubMed", "id": "15155892", "url": "https://pubmed.ncbi.nlm.nih.gov/15155892" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04714-1", "protein_name": "G protein-coupled receptor 1", "gene_name": "GCR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P18064-1", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "gene_name": "GPA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04714", "url": "https://www.uniprot.org/uniprotkb/O04714" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15155892", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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J. 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[3702]" } ], "record_id": "pubmed.20215588", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } 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"id": "21575092", "url": "https://pubmed.ncbi.nlm.nih.gov/21575092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22042-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 3", "gene_name": "ANP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39024-1", "protein_name": "Mitogen-activated protein kinase 4", "gene_name": "MPK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LNZ2-1", "protein_name": "Kinesin-like protein KIN-7B", "gene_name": "KIN7B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMM5-1", "protein_name": "Mitogen-activated protein kinase 11", "gene_name": "MPK11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39026-1", "protein_name": "Mitogen-activated protein kinase 6", "gene_name": "MPK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQQ9-1", "protein_name": "Mitogen-activated protein kinase 13", "gene_name": "MPK13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJV0-1", "protein_name": "Mitogen-activated protein kinase kinase 6", "gene_name": "MKK6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22042", "url": "https://www.uniprot.org/uniprotkb/O22042" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21575092", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"Mouse-ear cress" }, { "uniprot_canonical_ac": "O22040-1", "protein_name": "Mitogen-activated protein kinase kinase kinase ANP1", "gene_name": "ANP1; NP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22042", "url": "https://www.uniprot.org/uniprotkb/O22042" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9263451", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A revised model of the active site of alternative oxidase.", "journal": "FEBS Lett.", "date": "1999", "authors": "Andersson M E, Nordlund P", "reference": { "type": "PubMed", "id": "10225419", "url": "https://pubmed.ncbi.nlm.nih.gov/10225419" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22049-1", "protein_name": "Ubiquinol oxidase 2, mitochondrial", "gene_name": "AOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39219-1", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "gene_name": "AOX1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22048-1", "protein_name": "Ubiquinol oxidase 1c, mitochondrial", "gene_name": "AOX1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23913-1", "protein_name": "Ubiquinol oxidase 1b, mitochondrial", "gene_name": "AOX1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22049", "url": "https://www.uniprot.org/uniprotkb/O22049" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10225419", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana.", "journal": "Plant Mol. Biol.", "date": "2005", "authors": "Clifton Rachel, Lister Ryan, Parker Karen L, Sappl Pia G, Elhafez Dina, Millar A Harvey, Day David A, Whelan James", "reference": { "type": "PubMed", "id": "16027974", "url": "https://pubmed.ncbi.nlm.nih.gov/16027974" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22049-1", "protein_name": "Ubiquinol oxidase 2, mitochondrial", "gene_name": "AOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39219-1", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "gene_name": "AOX1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22048-1", "protein_name": "Ubiquinol oxidase 1c, mitochondrial", "gene_name": "AOX1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BV7-1", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial", "gene_name": "NDB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWG1-1", "protein_name": "Mitochondrial uncoupling protein 2", "gene_name": "PUMP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81845-1", "protein_name": "Mitochondrial uncoupling protein 1", "gene_name": "PUMP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKT7-1", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial", "gene_name": "NDB4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22049", "url": "https://www.uniprot.org/uniprotkb/O22049" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16027974", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alternative oxidases in Arabidopsis: a comparative analysis of differential expression in the gene family provides new insights into function of non-phosphorylating bypasses.", "journal": "Biochim. Biophys. Acta", "date": "2006", "authors": "Clifton Rachel, Millar A Harvey, Whelan James", "reference": { "type": "PubMed", "id": "16859634", "url": "https://pubmed.ncbi.nlm.nih.gov/16859634" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22049-1", "protein_name": "Ubiquinol oxidase 2, mitochondrial", "gene_name": "AOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39219-1", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "gene_name": "AOX1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22048-1", "protein_name": "Ubiquinol oxidase 1c, mitochondrial", "gene_name": "AOX1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23913-1", "protein_name": "Ubiquinol oxidase 1b, mitochondrial", "gene_name": "AOX1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEE7-1", "protein_name": "Ubiquinol oxidase 3, mitochondrial", "gene_name": "AOX1D; AOX3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22049", "url": "https://www.uniprot.org/uniprotkb/O22049" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16859634", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Involvement of hydrogen peroxide, calcium, and ethylene in the induction of the alternative pathway in chilling-stressed Arabidopsis callus.", "journal": "Planta", "date": "2012", "authors": "Wang Huahua, Huang Junjun, Liang Xiaolei, Bi Yurong", "reference": { "type": "PubMed", "id": "21814799", "url": "https://pubmed.ncbi.nlm.nih.gov/21814799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22049-1", "protein_name": "Ubiquinol oxidase 2, mitochondrial", "gene_name": "AOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39219-1", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "gene_name": "AOX1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22048-1", "protein_name": "Ubiquinol oxidase 1c, mitochondrial", "gene_name": "AOX1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23913-1", "protein_name": "Ubiquinol oxidase 1b, mitochondrial", "gene_name": "AOX1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEE7-1", "protein_name": "Ubiquinol oxidase 3, mitochondrial", "gene_name": "AOX1D; AOX3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22049", "url": "https://www.uniprot.org/uniprotkb/O22049" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21814799", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the gene family for alternative oxidase from Arabidopsis thaliana.", "journal": "Plant Mol. Biol.", "date": "1997", "authors": "Saisho D, Nambara E, Naito S, Tsutsumi N, Hirai A, Nakazono M", "reference": { "type": "PubMed", "id": "9349280", "url": "https://pubmed.ncbi.nlm.nih.gov/9349280" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22049-1", "protein_name": "Ubiquinol oxidase 2, mitochondrial", "gene_name": "AOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39219-1", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "gene_name": "AOX1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22048-1", "protein_name": "Ubiquinol oxidase 1c, mitochondrial", "gene_name": "AOX1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23913-1", "protein_name": "Ubiquinol oxidase 1b, mitochondrial", "gene_name": "AOX1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22049", "url": 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"evidence": [ { "database": "UniProtKB", "id": "O22059", "url": "https://www.uniprot.org/uniprotkb/O22059" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9262483", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2012-05-04", "authors": "Yun Ju, Kim Youn-Sung, Jung Jae-Hoon, Seo Pil Joon, Park Chung-Mo", "reference": { "type": "PubMed", "id": "22442143", "url": "https://pubmed.ncbi.nlm.nih.gov/22442143" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22130-1", "protein_name": "AT-hook motif nuclear-localized protein 22", "gene_name": "AHL22", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FML2-1", "protein_name": "Histone deacetylase 6", "gene_name": "HDA6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H0W2-1", "protein_name": "Histone deacetylase 9", "gene_name": "HDA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22446-1", "protein_name": "Histone deacetylase 19", "gene_name": "HD1; HDA19", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22130", "url": "https://www.uniprot.org/uniprotkb/O22130" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22442143", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ASYMMETRIC LEAVES2-LIKE19/LATERAL ORGAN BOUNDARIES DOMAIN30 and ASL20/LBD18 regulate tracheary element differentiation in Arabidopsis.", "journal": "The Plant cell", "date": "2008-12", "authors": "Soyano Takashi, Thitamadee Siripong, Machida Yasunori, Chua Nam-Hai", "reference": { "type": "PubMed", "id": "19088331", "url": "https://pubmed.ncbi.nlm.nih.gov/19088331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22131-1", "protein_name": "LOB domain-containing protein 18", "gene_name": "LBD18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81323-1", "protein_name": "LOB domain-containing protein 30", "gene_name": "LBD30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8W9-1", "protein_name": "NAC domain-containing protein 30", "gene_name": "NAC030", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVA1-1", "protein_name": "NAC domain-containing protein 101", "gene_name": "NAC101", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22131", "url": "https://www.uniprot.org/uniprotkb/O22131" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19088331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LBD18/ASL20 regulates lateral root formation in combination with LBD16/ASL18 downstream of ARF7 and ARF19 in Arabidopsis.", "journal": "Plant physiology", "date": "2009-11", "authors": "Lee Han Woo, Kim Nan Young, Lee Dong Ju, Kim Jungmook", "reference": { "type": "PubMed", "id": "19717544", "url": "https://pubmed.ncbi.nlm.nih.gov/19717544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22131-1", "protein_name": "LOB domain-containing protein 18", "gene_name": "LBD18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLB7-1", "protein_name": "LOB domain-containing protein 16", "gene_name": "LBD16", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22131", "url": "https://www.uniprot.org/uniprotkb/O22131" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19717544", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LBD18 acts as a transcriptional activator that directly binds to the EXPANSIN14 promoter in promoting lateral root emergence of Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-01", "authors": "Lee Han Woo, Kim Min-Jung, Kim Nan Young, Lee Sung Haeng, Kim Jungmook", "reference": { "type": "PubMed", "id": "22974309", "url": "https://pubmed.ncbi.nlm.nih.gov/22974309" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22131-1", "protein_name": "LOB domain-containing protein 18", "gene_name": "LBD18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMA0-1", "protein_name": "Expansin-A14", "gene_name": "EXPA14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLB7-1", "protein_name": "LOB domain-containing protein 16", "gene_name": "LBD16", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22131", "url": "https://www.uniprot.org/uniprotkb/O22131" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22974309", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The conserved proline residue in the LOB domain of LBD18 is critical for DNA-binding and biological function.", "journal": "Molecular plant", "date": "2013-09", "authors": "Lee Han Woo, Kim Min-Jung, Park Moung Yeon, Han Kyung-Hwan, Kim Jungmook", "reference": { "type": "PubMed", "id": "23430048", "url": "https://pubmed.ncbi.nlm.nih.gov/23430048" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22131-1", "protein_name": "LOB domain-containing protein 18", "gene_name": "LBD18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLB7-1", "protein_name": "LOB domain-containing protein 16", "gene_name": "LBD16", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22131", "url": "https://www.uniprot.org/uniprotkb/O22131" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 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phenylpropanoid pathway.", "journal": "The Journal of biological chemistry", "date": "2001-09-28", "authors": "Schoch G, Goepfert S, Morant M, Hehn A, Meyer D, Ullmann P, Werck-Reichhart D", "reference": { "type": "PubMed", "id": "11429408", "url": "https://pubmed.ncbi.nlm.nih.gov/11429408" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O22203-1", "protein_name": "Cytochrome P450 98A3", "gene_name": "CYP98A3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CA60-1", "protein_name": "Cytochrome P450 98A9", "gene_name": "CYP98A9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CA61-1", "protein_name": "Cytochrome P450 98A8", "gene_name": "CYP98A8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22203", "url": "https://www.uniprot.org/uniprotkb/O22203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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