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"field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selective membrane protein internalization accompanies movement from the endoplasmic reticulum to the protein storage vacuole pathway in Arabidopsis.", "journal": "Plant Cell", "date": "2005", "authors": "Oufattole Mohammed, Park Joon Ho, Poxleitner Marianne, Jiang Liwen, Rogers John C", "reference": { "type": "PubMed", "id": "16227454", "url": "https://pubmed.ncbi.nlm.nih.gov/16227454" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04023-1", "protein_name": "Protein SRC2 homolog", "gene_name": "SRC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ95-1", "protein_name": "Vesicle-associated protein 1-1", "gene_name": "PVA11", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04023", "url": "https://www.uniprot.org/uniprotkb/O04023" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16227454", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A low temperature-inducible protein AtSRC2 enhances the ROS-producing activity of NADPH oxidase AtRbohF.", "journal": "Biochimica et biophysica acta", "date": "2013-12", "authors": "Kawarazaki Tomoko, Kimura Sachie, Iizuka Ayako, Hanamata Shigeru, Nibori Hitomi, Michikawa Masataka, Imai Aya, Abe Mitsutomo, Kaya Hidetaka, Kuchitsu Kazuyuki", "reference": { "type": "PubMed", "id": "23872431", "url": "https://pubmed.ncbi.nlm.nih.gov/23872431" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04023-1", "protein_name": "Protein SRC2 homolog", "gene_name": "SRC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48538-1", "protein_name": "Respiratory burst oxidase homolog protein F", "gene_name": "RBOHF", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04023", "url": "https://www.uniprot.org/uniprotkb/O04023" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23872431", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and functional expression of a novel geranylgeranyl pyrophosphate synthase gene from Arabidopsis thaliana in Escherichia coli.", "journal": "Plant Cell Physiol.", "date": "1997", "authors": "Zhu X F, Suzuki K, Okada K, Tanaka K, Nakagawa T, Kawamukai M, Matsuda K", "reference": { "type": "PubMed", "id": "9150607", "url": "https://pubmed.ncbi.nlm.nih.gov/9150607" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04046-1", "protein_name": "Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2", "gene_name": "GGPPS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04046", "url": "https://www.uniprot.org/uniprotkb/O04046" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9150607", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.", "journal": "Plant physiology", "date": "2013-11", "authors": "Toujani Walid, Mu\u00f1oz-Bertomeu Jes\u00fas, Flores-Tornero Mar\u00eda, Rosa-T\u00e9llez Sara, Anoman Armand Djoro, Alseekh Saleh, Fernie Alisdair R, Ros Roc", "reference": { "type": "PubMed", "id": "24058165", "url": "https://pubmed.ncbi.nlm.nih.gov/24058165" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04130-1", "protein_name": "D-3-phosphoglycerate dehydrogenase 2, chloroplastic", "gene_name": "PGDH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49485-1", "protein_name": "D-3-phosphoglycerate dehydrogenase 1, chloroplastic", "gene_name": "PGDH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LT69-1", "protein_name": "D-3-phosphoglycerate dehydrogenase 3, chloroplastic", "gene_name": "PGDH3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses.", "journal": "The Plant cell", "date": "2003-05", "authors": "Feng Suhua, Ma Ligeng, Wang Xiping, Xie Daoxin, Dinesh-Kumar S P, Wei Ning, Deng Xing Wang", "reference": { "type": "PubMed", "id": "12724535", "url": "https://pubmed.ncbi.nlm.nih.gov/12724535" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04197-1", "protein_name": "Coronatine-insensitive protein 1", "gene_name": "COI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04197", "url": "https://www.uniprot.org/uniprotkb/O04197" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12724535", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"The peroxisomal NAD+ carrier of Arabidopsis thaliana transports coenzyme A and its derivatives.", "journal": "Journal of bioenergetics and biomembranes", "date": "2012-06", "authors": "Agrimi Gennaro, Russo Annamaria, Pierri Ciro Leonardo, Palmieri Ferdinando", "reference": { "type": "PubMed", "id": "22555559", "url": "https://pubmed.ncbi.nlm.nih.gov/22555559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04200-1", "protein_name": "Peroxisomal nicotinamide adenine dinucleotide carrier", "gene_name": "PXN", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04200", "url": "https://www.uniprot.org/uniprotkb/O04200" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22555559", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Possible roles in RNA binding and macromolecular assembly.", "journal": "J. Biol. Chem.", "date": "1997", "authors": "Asano K, Vornlocher HP, Richter-Cook NJ, Merrick WC, Hinnebusch AG, Hershey JW", "reference": { "type": "PubMed", "id": "9341143", "url": "https://pubmed.ncbi.nlm.nih.gov/9341143" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04202-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit F", "gene_name": "TIF3F1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O15371-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit D", "gene_name": "EIF3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15372-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit H", "gene_name": "EIF3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O35864-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "Cops5", 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Bastow Ruth M, McWatters Harriet G, Kozma-Bogn\u00e1r L\u00e1szl\u00f3, Nagy Ferenc, Millar Andrew J, Amasino Richard M", "reference": { "type": "PubMed", "id": "12214234", "url": "https://pubmed.ncbi.nlm.nih.gov/12214234" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04211-1", "protein_name": "Protein EARLY FLOWERING 4", "gene_name": "ELF4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04211", "url": "https://www.uniprot.org/uniprotkb/O04211" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12214234", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Bot.", "date": "2006", "authors": "Molas Maria Lia, Kiss John Z, Correll Melanie J", "reference": { "type": "PubMed", "id": "16908503", "url": "https://pubmed.ncbi.nlm.nih.gov/16908503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04211-1", "protein_name": "Protein EARLY FLOWERING 4", "gene_name": "ELF4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWI1-1", "protein_name": "Protein PHYTOCHROME KINASE SUBSTRATE 1", "gene_name": "PKS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMF5-1", "protein_name": "Root phototropism protein 3", "gene_name": "NPH3; RPT3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04211", "url": "https://www.uniprot.org/uniprotkb/O04211" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16908503", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NSP-Dependent Simple Nitrile Formation Dominates upon Breakdown of Major Aliphatic Glucosinolates in Roots, Seeds, and Seedlings of Arabidopsis thaliana Columbia-0.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Wittstock Ute, Meier Kathrin, D\u00f6rr Friederike, Ravindran Beena M", "reference": { "type": "PubMed", "id": "27990154", "url": "https://pubmed.ncbi.nlm.nih.gov/27990154" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04316-1", "protein_name": "Thiohydroximate-O-sulfate sulfur/sulfate-lyase (nitrile-forming) NSP4", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glucosinolate content in dormant and germinating Arabidopsis thaliana seeds is affected by non-functional alleles of 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], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 165, "end_pos": 165, "sequence_org": "D", "sequence_mut": "N", "comment": "In eer3-1; increased sensitivity and profound exaggeration of response to ethylene, as well as increased ethylene production.", "evidence": [ { "database": "UniProtKB", "id": "O04331", "url": "https://www.uniprot.org/uniprotkb/O04331" }, { "database": "PubMed", "id": "17525078", "url": "https://pubmed.ncbi.nlm.nih.gov/17525078" } ], "uniprot_canonical_ac": "O04331-1" } ], "record_id": "pubmed.17525078", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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3702, "evidence": [ { "database": "UniProtKB", "id": "O04331", "url": "https://www.uniprot.org/uniprotkb/O04331" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 37, "end_pos": 37, "sequence_org": "G", "sequence_mut": "D", "comment": "In phb3-3; reduced sensitivity to salt stress and defective in H(2)O(2)-induced nitric oxide (NO) accumulation, light-induced NO in cotyledons, abscisic acid (ABA)-induced NO accumulation and stomatal closure, and in auxin-induced lateral root formation.", "evidence": [ { "database": "UniProtKB", "id": "O04331", "url": "https://www.uniprot.org/uniprotkb/O04331" }, { "database": "PubMed", "id": "20068191", "url": "https://pubmed.ncbi.nlm.nih.gov/20068191" } ], "uniprot_canonical_ac": "O04331-1" } ], "record_id": "pubmed.20068191", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol.", "date": "1997", "authors": "Snedden W A, Fromm H", "reference": { "type": "PubMed", "id": "9132067", "url": "https://pubmed.ncbi.nlm.nih.gov/9132067" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04331-1", "protein_name": "Prohibitin-3, mitochondrial", "gene_name": "PHB3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04331", "url": "https://www.uniprot.org/uniprotkb/O04331" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9132067", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"uniprot_canonical_ac": "Q9STX0-1", "protein_name": "Probable WRKY transcription factor 7", "gene_name": "WRKY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XI90-1", "protein_name": "Probable WRKY transcription factor 4", "gene_name": "WRKY4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04336", "url": "https://www.uniprot.org/uniprotkb/O04336" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11449049", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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"Tubulin-folding cofactor A", "gene_name": "TFCA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMR2-1", "protein_name": "Tubulin-folding cofactor C", "gene_name": "TFCC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZPX1-1", "protein_name": "ADP-ribosylation factor-like protein 2", "gene_name": "ARL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L5R3-1", "protein_name": "Tubulin-folding cofactor D", "gene_name": "TFCD; TTN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GRL7-1", "protein_name": "Tubulin-folding cofactor E", "gene_name": "TFCE", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q67Z52-1", "protein_name": "Tubulin-folding cofactor B", "gene_name": "TFCB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04350", "url": "https://www.uniprot.org/uniprotkb/O04350" } ], "common_name": "Mouse-ear 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Cortical microtubules-free interphase cells and mitotic nuclei without spindles.", "evidence": [ { "database": "UniProtKB", "id": "Q9SMR2", "url": "https://www.uniprot.org/uniprotkb/Q9SMR2" }, { "database": "PubMed", "id": "11959844", "url": "https://pubmed.ncbi.nlm.nih.gov/11959844" } ], "uniprot_canonical_ac": "Q9SMR2-1" } ], "record_id": "pubmed.11959844", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis TUBULIN-FOLDING COFACTOR A gene is involved in the control of the alpha/beta-tubulin monomer balance.", "journal": "The Plant cell", "date": "2002-09", "authors": "Kirik Victor, Grini Paul E, Mathur Jaideep, Klinkhammer Irene, Adler Klaus, Bechtold Nicole, Herzog Michel, Bonneville Jean-Marc, H\u00fclskamp Martin", "reference": { "type": "PubMed", "id": "12215519", "url": "https://pubmed.ncbi.nlm.nih.gov/12215519" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04350-1", "protein_name": "Tubulin-folding cofactor A", "gene_name": "TFCA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04350", "url": "https://www.uniprot.org/uniprotkb/O04350" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of tubulin folding cofactor A from Arabidopsis thaliana and its beta-tubulin binding characterization.", "journal": "FEBS letters", "date": "2010-08-20", "authors": "Lu Lu, Nan 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense.", "journal": "Genes & development", "date": "2006-12-01", "authors": "Zhang Xiuren, Yuan Yu-Ren, Pei Yi, Lin Shih-Shun, Tuschl Thomas, Patel Dinshaw J, Chua Nam-Hai", "reference": { "type": "PubMed", "id": "17158744", "url": "https://pubmed.ncbi.nlm.nih.gov/17158744" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17158744", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Biol.", "date": "2007", "authors": "Baumberger Nicolas, Tsai Ching-Hsui, Lie Miranda, Havecker Ericka, Baulcombe David C", "reference": { "type": "PubMed", "id": "17869110", "url": "https://pubmed.ncbi.nlm.nih.gov/17869110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZVD5-1", "protein_name": "Protein argonaute 4", "gene_name": "AGO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48771-1", "protein_name": "Protein argonaute 6", "gene_name": "AGO6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJK3-1", "protein_name": "Protein argonaute 5", "gene_name": "AGO5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84VQ0-1", "protein_name": "Protein argonaute 9", "gene_name": "AGO9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHF3-1", "protein_name": "Protein 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing.", "journal": "PLoS genetics", "date": "2009-09", "authors": "Mallory Allison C, Hinze Annika, Tucker Matthew R, Bouch\u00e9 Nicolas, Gasciolli Virginie, Elmayan Taline, Lauressergues Dominique, Jauvion Vincent, Vaucheret Herv\u00e9, Laux Thomas", "reference": { "type": "PubMed", "id": "19763164", "url": "https://pubmed.ncbi.nlm.nih.gov/19763164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XGW1-1", "protein_name": "Protein argonaute 10", "gene_name": "AGO10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19763164", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.", "journal": "RNA (New York, N.Y.)", "date": "2009-12", "authors": "Eamens Andrew L, Smith Neil A, Curtin Shaun J, Wang Ming-Bo, Waterhouse Peter M", "reference": { "type": "PubMed", "id": "19861421", "url": "https://pubmed.ncbi.nlm.nih.gov/19861421" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04492-1", "protein_name": "Double-stranded RNA-binding protein 1", "gene_name": "DRB1; HYL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein.", "journal": "Genes Dev.", "date": "2010", "authors": "Azevedo Jacinthe, Garcia Damien, Pontier Dominique, Ohnesorge Stephanie, Yu Agnes, Garcia Shahinez, Braun Laurence, Bergdoll Marc, Hakimi Mohamed Ali, Lagrange Thierry, Voinnet Olivier", "reference": { "type": "PubMed", "id": "20439431", "url": "https://pubmed.ncbi.nlm.nih.gov/20439431" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZVD5-1", "protein_name": "Protein argonaute 4", "gene_name": "AGO4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20439431", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Montgomery Taiowa A, Carrington James C", "reference": { "type": "PubMed", "id": "20562854", "url": "https://pubmed.ncbi.nlm.nih.gov/20562854" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SG02-1", "protein_name": "RNA-dependent RNA polymerase 6", "gene_name": "RDR6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20562854", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"gene_name": "AGO1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22771475", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs.", "journal": "EMBO J.", "date": "2012", "authors": "Frank Filipp, Hauver Jesse, Sonenberg Nahum, Nagar Bhushan", "reference": { "type": "PubMed", "id": "22850669", "url": "https://pubmed.ncbi.nlm.nih.gov/22850669" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJK3-1", "protein_name": "Protein argonaute 5", "gene_name": "AGO5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHF3-1", "protein_name": "Protein argonaute 2", "gene_name": "AGO2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22850669", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ago hook and RNA helicase motifs underpin dual roles for SDE3 in antiviral defense and silencing of nonconserved intergenic regions.", "journal": "Mol. Cell", "date": "2012", "authors": "Garcia Damien, Garcia Shahinez, Pontier Dominique, Marchais Antonin, Renou Jean Pierre, Lagrange Thierry, Voinnet Olivier", "reference": { "type": "PubMed", "id": "22940249", "url": "https://pubmed.ncbi.nlm.nih.gov/22940249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O04379-1", "protein_name": "Protein argonaute 1", "gene_name": "AGO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZVD5-1", "protein_name": "Protein argonaute 4", "gene_name": "AGO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYD9-1", "protein_name": "Probable RNA helicase SDE3", "gene_name": "SDE3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O04379", "url": "https://www.uniprot.org/uniprotkb/O04379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 427, "end_pos": 427, "sequence_org": "K", "sequence_mut": "A", "comment": "Does not complement silencing phenotype of a disrupted mutant at 18 days growth, silencing is restored at 36 days growth; should block ATP binding/hydrolysis, probable loss of putative helicase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYD9", "url": "https://www.uniprot.org/uniprotkb/Q8GYD9" }, { "database": "PubMed", "id": "22940249", "url": "https://pubmed.ncbi.nlm.nih.gov/22940249" } ], "uniprot_canonical_ac": "Q8GYD9-1" }, { "start_pos": 888, "end_pos": 888, "sequence_org": "W", "sequence_mut": "F", "comment": "Loss of binding to AGO1 and AGO4.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYD9", "url": "https://www.uniprot.org/uniprotkb/Q8GYD9" }, { "database": "PubMed", "id": "22940249", "url": "https://pubmed.ncbi.nlm.nih.gov/22940249" } ], "uniprot_canonical_ac": "Q8GYD9-1" } ], "record_id": "pubmed.22940249", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]