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dynamic reciprocal RBR-PRC2 regulatory circuit controls Arabidopsis gametophyte development.", "journal": "Current biology : CB", "date": "2008-11-11", "authors": "Johnston Amal J, Matveeva Elena, Kirioukhova Olga, Grossniklaus Ueli, Gruissem Wilhelm", "reference": { "type": "PubMed", "id": "18976913", "url": "https://pubmed.ncbi.nlm.nih.gov/18976913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LKZ3-1", "protein_name": "Retinoblastoma-related protein 1", "gene_name": "RBR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LKZ3", "url": "https://www.uniprot.org/uniprotkb/Q9LKZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18976913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Leviczky T\u00fcnde, Pettk\u00f3-Szandtner Alad\u00e1r, Darula Zsuzsanna, Iwamoto Akitoshi, Nomoto Mika, Tada Yasuomi, Higashiyama Tetsuya, Demura Taku, Doonan John H, Hauser Marie-Theres, Sugimoto Keiko, Umeda Masaaki, Magyar Zolt\u00e1n, B\u00f6gre L\u00e1szl\u00f3, Ito Masaki", "reference": { "type": "PubMed", "id": "26069325", "url": "https://pubmed.ncbi.nlm.nih.gov/26069325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LKZ3-1", "protein_name": "Retinoblastoma-related protein 1", "gene_name": "RBR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24100-1", "protein_name": "Cyclin-dependent kinase A-1", "gene_name": "CDKA-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FV71-1", "protein_name": "Transcription factor E2FB", "gene_name": "E2FB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FV70-1", "protein_name": "Transcription factor E2FC", "gene_name": "ATE2F2; E2FC", "tax_name": "Mouse-ear cress" 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chloroplast carbon metabolism.", "journal": "The Biochemical journal", "date": "2014-03-01", "authors": "Rocha Agostinho G, Mehlmer Norbert, Stael Simon, Mair Andrea, Parvin Nargis, Chigri Fatima, Teige Markus, Vothknecht Ute C", "reference": { "type": "PubMed", "id": "24328790", "url": "https://pubmed.ncbi.nlm.nih.gov/24328790" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWV0-1", "protein_name": "Transketolase-1, chloroplastic", "gene_name": "TKL-1; TKL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWV0", "url": "https://www.uniprot.org/uniprotkb/Q8RWV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "phosphorylation": [ { "start_pos": 428, "end_pos": 428, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", 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"uniprot_canonical_ac": "Q6R2K3-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "gene_name": "SRF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R2K2-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 4", "gene_name": "SRF4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R2J8-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 8", "gene_name": "SRF8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6R2K1-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 5", "gene_name": "SRF5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FG24-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 2", "gene_name": "SRF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWZ1-1", "protein_name": "Protein STRUBBELIG", "gene_name": "SUB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q06BH3-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 1", "gene_name": "SRF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M9-1", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 6", "gene_name": "SRF6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LUL4", "url": "https://www.uniprot.org/uniprotkb/Q9LUL4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17397538", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterisation of two novel maize LRR receptor-like kinases, which belong to the SERK gene family.", "journal": "Planta", "date": "2001", "authors": "Baudino S, Hansen S, Brettschneider R, Hecht V F, Dresselhaus T, L\u00f6rz H, Dumas C, Rogowsky P M", "reference": { "type": "PubMed", "id": "11523644", "url": "https://pubmed.ncbi.nlm.nih.gov/11523644" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIC7-1", "protein_name": "Somatic embryogenesis receptor kinase 2", "gene_name": "SERK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPS5-1", "protein_name": "Somatic embryogenesis receptor kinase 5", "gene_name": "SERK5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11523644", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture.", "journal": "Plant Physiol.", "date": "2001", "authors": "Hecht V, Vielle-Calzada J P, Hartog M V, Schmidt E D, Boutilier K, Grossniklaus U, de Vries S C", "reference": { "type": "PubMed", "id": "11706164", "url": "https://pubmed.ncbi.nlm.nih.gov/11706164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AG2-1", "protein_name": "Somatic embryogenesis receptor kinase 1", "gene_name": "SERK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIC7-1", "protein_name": "Somatic embryogenesis receptor kinase 2", "gene_name": "SERK2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11706164", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BRI1/BAK1, a receptor kinase pair mediating brassinosteroid signaling.", "journal": "Cell", "date": "2002-07-26", "authors": "Nam Kyoung Hee, Li Jianming", "reference": { "type": "PubMed", "id": "12150928", "url": "https://pubmed.ncbi.nlm.nih.gov/12150928" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22476-1", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "gene_name": "BRI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12150928", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling.", "journal": "Cell", "date": "2002-07-26", "authors": "Li Jia, Wen Jiangqi, Lease Kevin A, Doke Jason T, Tax Frans E, Walker John C", "reference": { "type": "PubMed", "id": "12150929", "url": "https://pubmed.ncbi.nlm.nih.gov/12150929" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22476-1", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "gene_name": "BRI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 317, "end_pos": 317, "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of kinase activity and loss of interaction with hopAB2/AvrPtoB, but no effect on the binding to the FHA domain of KAPP. Reduced interaction with BIR2.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "17302430", "url": "https://pubmed.ncbi.nlm.nih.gov/17302430" }, { "database": "PubMed", "id": "12150929", "url": "https://pubmed.ncbi.nlm.nih.gov/12150929" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" } ], "uniprot_canonical_ac": "Q94F62-1" } ], "record_id": "pubmed.12150929", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"2007-07-03", "authors": "Kemmerling Birgit, Schwedt Anne, Rodriguez Patricia, Mazzotta Sara, Frank Markus, Qamar Synan Abu, Mengiste Tesfaye, Betsuyaku Shigeyuki, Parker Jane E, M\u00fcssig Carsten, Thomma Bart P H J, Albrecht Catherine, de Vries Sacco C, Hirt Heribert, N\u00fcrnberger Thorsten", "reference": { "type": "PubMed", "id": "17583510", "url": "https://pubmed.ncbi.nlm.nih.gov/17583510" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17583510", "abstract": "", "glycosylation": [], 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Natl. Acad. Sci. U.S.A.", "date": "2007", "authors": "Heese Antje, Hann Dagmar R, Gimenez-Ibanez Selena, Jones Alexandra M E, He Kai, Li Jia, Schroeder Julian I, Peck Scott C, Rathjen John P", "reference": { "type": "PubMed", "id": "17626179", "url": "https://pubmed.ncbi.nlm.nih.gov/17626179" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL28-1", "protein_name": "LRR receptor-like serine/threonine-protein kinase FLS2", "gene_name": "FLS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17626179", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Fluorescence fluctuation analysis of Arabidopsis thaliana somatic embryogenesis receptor-like kinase and brassinosteroid insensitive 1 receptor oligomerization.", "journal": "Biophys. J.", "date": "2008", "authors": "Hink Mark A, Shah Khalid, Russinova Eugenia, de Vries Sacco C, Visser Antonie J W G", "reference": { "type": "PubMed", "id": "17905839", "url": "https://pubmed.ncbi.nlm.nih.gov/17905839" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22476-1", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "gene_name": "BRI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AG2-1", "protein_name": "Somatic embryogenesis receptor kinase 1", "gene_name": "SERK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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Host Microbe", "date": "2008", "authors": "Shan Libo, He Ping, Li Jianming, Heese Antje, Peck Scott C, N\u00fcrnberger Thorsten, Martin Gregory B, Sheen Jen", "reference": { "type": "PubMed", "id": "18621007", "url": "https://pubmed.ncbi.nlm.nih.gov/18621007" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18621007", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Reduction of autophosphorylation; when associated with A-541.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://pubmed.ncbi.nlm.nih.gov/19105183" } ], "uniprot_canonical_ac": "Q94AG2-1" } ], "record_id": "pubmed.19105183", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 48 }, { "field": "total_sites", "count": 45 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Modulations of AtGSTF10 expression induce stress tolerance and BAK1-mediated cell death.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2009", "authors": "Ryu Hee Young, Kim Sun Young, Park Hyun Mi, You Ji Young, Kim Beg Hab, Lee June Seung, Nam Kyoung Hee", "reference": { "type": "PubMed", "id": "19118534", "url": "https://pubmed.ncbi.nlm.nih.gov/19118534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42761-1", "protein_name": "Glutathione S-transferase F10", "gene_name": "GSTF10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19118534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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"Analysis of phosphorylation of the BRI1/BAK1 complex in arabidopsis reveals amino acid residues critical for receptor formation and activation of BR signaling.", "journal": "Molecules and cells", "date": "2009-02-28", "authors": "Yun Hye Sup, Bae Young Hee, Lee Yun Ji, Chang Soo Chul, Kim Seong-Ki, Li Jianming, Nam Kyoung Hee", "reference": { "type": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 121, "end_pos": 121, "sequence_org": "L", "sequence_mut": "E", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 172, "end_pos": 172, "sequence_org": "S", "sequence_mut": "F", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 317, "end_pos": 317, "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of kinase activity and loss of interaction with hopAB2/AvrPtoB, but no effect on the binding to the FHA domain of KAPP. Reduced interaction with BIR2.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "17302430", "url": "https://pubmed.ncbi.nlm.nih.gov/17302430" }, { "database": "PubMed", "id": "12150929", "url": "https://pubmed.ncbi.nlm.nih.gov/12150929" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 32, "end_pos": 32, "sequence_org": "L", "sequence_mut": "E", "comment": "Loss of binding to BRI1, but no effect on kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 446, "end_pos": 446, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect. Reduced interaction with BIR2. Loss of kinase activity; when associated with D-449 and D-450.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 446, "end_pos": 446, "sequence_org": "T", "sequence_mut": "D", "comment": "No effect. Reduced interaction with BIR2. Loss of kinase activity; when associated with D-449 and D-450.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 449, "end_pos": 449, "sequence_org": "T", "sequence_mut": "A", "comment": "Slight decrease of kinase activity but loss of interaction with hopAB2/AvrPtoB. Reduced interaction with BIR2. Loss of kinase activity; when associated with A-446 and D-450.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 449, "end_pos": 449, "sequence_org": "T", "sequence_mut": "D", "comment": "Slight decrease of kinase activity but loss of interaction with hopAB2/AvrPtoB. Reduced interaction with BIR2. Loss of kinase activity; when associated with A-446 and D-450.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 450, "end_pos": 450, "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of interaction with hopAB2/AvrPtoB and loss of phosphorylation. Reduced interaction with BIR2. Loss of kinase activity; when associated with A-446 and D-449.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" }, { "database": "PubMed", "id": "22547027", "url": "https://pubmed.ncbi.nlm.nih.gov/22547027" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 450, "end_pos": 450, "sequence_org": "T", "sequence_mut": "D", "comment": "Loss of interaction with hopAB2/AvrPtoB and loss of phosphorylation. Reduced interaction with BIR2. Loss of kinase activity; when associated with A-446 and D-449.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" }, { "database": "PubMed", "id": "22547027", "url": "https://pubmed.ncbi.nlm.nih.gov/22547027" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 455, "end_pos": 455, "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "18694562", "url": 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{ "start_pos": 46, "end_pos": 46, "sequence_org": "L", "sequence_mut": "E", "comment": "Loss of binding to BRI1 and loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 64, "end_pos": 64, "sequence_org": "C", "sequence_mut": "Y", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 94, "end_pos": 94, "sequence_org": "L", "sequence_mut": "E", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Membrane steroid-binding protein 1 (MSBP1) negatively regulates brassinosteroid signaling by enhancing the endocytosis of BAK1.", "journal": "Cell Res.", "date": "2009", "authors": "Song Li, Shi Qiu-Ming, Yang Xiao-Hua, Xu Zhi-Hong, Xue Hong-Wei", "reference": { "type": "PubMed", "id": "19532123", "url": "https://pubmed.ncbi.nlm.nih.gov/19532123" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XFM6-1", "protein_name": "Membrane steroid-binding protein 1", "gene_name": "MSBP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19532123", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The multifunctional leucine-rich repeat receptor kinase BAK1 is implicated in Arabidopsis development and immunity.", "journal": "European journal of cell biology", "date": "2010", "authors": "Postel Sandra, K\u00fcfner Isabell, Beuter Christine, Mazzotta Sara, Schwedt Anne, Borlotti Andrea, Halter Thierry, Kemmerling Birgit, 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Reduced interaction with BIR2.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" }, { "database": "PubMed", "id": "17302430", "url": "https://pubmed.ncbi.nlm.nih.gov/17302430" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 312, "end_pos": 312, "sequence_org": "T", "sequence_mut": "D", "comment": "Reduced interaction with BIR2.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 317, "end_pos": 317, "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of kinase activity and loss of interaction with hopAB2/AvrPtoB, but no effect on the binding to the FHA domain of KAPP. Reduced interaction with BIR2.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "17302430", "url": "https://pubmed.ncbi.nlm.nih.gov/17302430" }, { "database": "PubMed", "id": "12150929", "url": "https://pubmed.ncbi.nlm.nih.gov/12150929" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 446, "end_pos": 446, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect. Reduced interaction with BIR2. Loss of kinase activity; when associated with D-449 and D-450.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 446, "end_pos": 446, "sequence_org": "T", "sequence_mut": "D", "comment": "No effect. Reduced interaction with BIR2. Loss of kinase activity; when associated with D-449 and D-450.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 449, "end_pos": 449, "sequence_org": "T", "sequence_mut": "A", "comment": "Slight decrease of kinase activity but loss of interaction with hopAB2/AvrPtoB. Reduced interaction with BIR2. 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Loss of kinase activity; when associated with A-446 and D-450.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 450, "end_pos": 450, "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of interaction with hopAB2/AvrPtoB and loss of phosphorylation. Reduced interaction with BIR2. 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Loss of kinase activity; when associated with A-446 and D-449.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "19277500", "url": "https://pubmed.ncbi.nlm.nih.gov/19277500" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" }, { "database": "PubMed", "id": "22547027", "url": "https://pubmed.ncbi.nlm.nih.gov/22547027" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" }, { "start_pos": 451, "end_pos": 451, "sequence_org": "A", "sequence_mut": "E", "comment": "Loss of kinase activity and loss of interaction with hopAB2/AvrPtoB. Reduced interaction with BIR2.", "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" }, { "database": "PubMed", "id": "22169508", "url": "https://pubmed.ncbi.nlm.nih.gov/22169508" }, { "database": "PubMed", "id": "24388849", "url": "https://pubmed.ncbi.nlm.nih.gov/24388849" } ], "uniprot_canonical_ac": "Q94F62-1" } ], "record_id": "pubmed.24388849", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Carboxy-terminus of BAK1 regulates kinase activity and is required for normal growth of Arabidopsis.", "journal": "Frontiers in plant science", "date": "2014", "authors": "Oh Man-Ho, Wang Xuejun, Kim Sang Yeol, Wu Xia, Clouse Steven D, Huber Steven C", "reference": { "type": "PubMed", "id": "24550926", "url": "https://pubmed.ncbi.nlm.nih.gov/24550926" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F62", "url": "https://www.uniprot.org/uniprotkb/Q94F62" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.", "journal": "Journal of structural biology", "date": "2014-04", "authors": "Blaum B\u00e4rbel S, Mazzotta Sara, N\u00f6ldeke Erik R, 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Biol.", "date": "2015", "authors": "Meng Xiangzong, Chen Xin, Mang Hyunggon, Liu Chenglong, Yu Xiao, Gao Xiquan, Torii Keiko U, He Ping, Shan Libo", "reference": { "type": "PubMed", "id": "26320950", "url": "https://pubmed.ncbi.nlm.nih.gov/26320950" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F62-1", "protein_name": "BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1", "gene_name": "BAK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42371-1", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "gene_name": "ERECTA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AG2-1", "protein_name": "Somatic embryogenesis receptor kinase 1", "gene_name": "SERK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKG5-1", "protein_name": "Somatic embryogenesis receptor kinase 4", "gene_name": "SERK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XIC7-1", 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No effect on ATP hydrolysis, but loss of proton transport.", "evidence": [ { "database": "UniProtKB", "id": "P19456", "url": "https://www.uniprot.org/uniprotkb/P19456" }, { "database": "PubMed", "id": "12626496", "url": "https://pubmed.ncbi.nlm.nih.gov/12626496" }, { "database": "PubMed", "id": "10995773", "url": "https://pubmed.ncbi.nlm.nih.gov/10995773" } ], "uniprot_canonical_ac": "P19456-1" } ], "record_id": "pubmed.10995773", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conserved Asp684 in transmembrane segment M6 of the plant plasma membrane P-type proton pump AHA2 is a molecular determinant of proton translocation.", "journal": "The Journal of biological chemistry", "date": "2003-05-16", "authors": "Buch-Pedersen Morten J, Palmgren Michael G", "reference": { "type": "PubMed", "id": "12626496", "url": "https://pubmed.ncbi.nlm.nih.gov/12626496" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P19456-1", "protein_name": "ATPase 2, plasma membrane-type", "gene_name": "AHA2; 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No effect on ATP hydrolysis, but loss of proton transport.", "evidence": [ { "database": "UniProtKB", "id": "P19456", "url": "https://www.uniprot.org/uniprotkb/P19456" }, { "database": "PubMed", "id": "12626496", "url": "https://pubmed.ncbi.nlm.nih.gov/12626496" }, { "database": "PubMed", "id": "10995773", "url": "https://pubmed.ncbi.nlm.nih.gov/10995773" } ], "uniprot_canonical_ac": "P19456-1" }, { "start_pos": 684, "end_pos": 684, "sequence_org": "D", "sequence_mut": "R", "comment": "No effect on ATP affinity, but loss of proton transport.", "evidence": [ { "database": "UniProtKB", "id": "P19456", "url": "https://www.uniprot.org/uniprotkb/P19456" }, { "database": "PubMed", "id": "12626496", "url": "https://pubmed.ncbi.nlm.nih.gov/12626496" } ], "uniprot_canonical_ac": "P19456-1" }, { "start_pos": 684, "end_pos": 684, "sequence_org": "D", "sequence_mut": "V", "comment": "No effect on ATP affinity, but loss of proton transport.", "evidence": [ { "database": "UniProtKB", "id": "P19456", "url": "https://www.uniprot.org/uniprotkb/P19456" }, { "database": "PubMed", "id": "12626496", "url": "https://pubmed.ncbi.nlm.nih.gov/12626496" } ], "uniprot_canonical_ac": "P19456-1" } ], "record_id": "pubmed.12626496", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of proton transport by plant plasma membrane proton ATPases.", "journal": "Journal of plant research", "date": "2003-12", "authors": "Buch-Pedersen M J, Palmgren M G", "reference": { "type": "PubMed", "id": "12920605", "url": "https://pubmed.ncbi.nlm.nih.gov/12920605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P19456-1", "protein_name": "ATPase 2, plasma membrane-type", "gene_name": "AHA2; 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Biol. 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