[ { "title": "Molecular cloning and functional characterization of human lymphotactin.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "1995", "authors": "Kennedy J, Kelner GS, Kleyensteuber S, Schall TJ, Weiss MC, Yssel H, Schneider PV, Cocks BG, Bacon KB, Zlotnik A", "reference": { "type": "PubMed", "id": "7602097", "url": "https://pubmed.ncbi.nlm.nih.gov/7602097" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], 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"sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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{ "type": "PubMed", "id": "7622448", "url": "https://pubmed.ncbi.nlm.nih.gov/7622448" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and functional expression of a novel CC chemokine receptor cDNA from a human basophilic cell line.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Power CA, Meyer A, Nemeth K, Bacon KB, Hoogewerf AJ, Proudfoot AE, Wells TN", "reference": { "type": "PubMed", "id": "7642634", "url": "https://pubmed.ncbi.nlm.nih.gov/7642634" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7642634", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7679328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of human and mouse EBI1, a lymphoid-specific G-protein-coupled receptor encoded on human chromosome 17q12-q21.2.", "journal": "Genomics", "date": "1994", "authors": "Schweickart VL, Raport CJ, Godiska R, Byers MG, Eddy RL Jr, Shows TB, Gray PW", "reference": { "type": "PubMed", "id": "7851893", "url": "https://pubmed.ncbi.nlm.nih.gov/7851893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47774-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "Ccr7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7851893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 58 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of a novel C or gamma type chemokine, SCM-1.", "journal": "FEBS letters", "date": "1995", "authors": "Yoshida T, Imai T, Kakizaki M, Nishimura M, Yoshie O", "reference": { "type": "PubMed", "id": "7875320", "url": "https://pubmed.ncbi.nlm.nih.gov/7875320" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", 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"gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C 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"referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8048929", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P32249-1", "protein_name": "G protein-coupled receptor 183", "gene_name": "GPR183", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8383238", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 58 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and functional expression of a new human CC-chemokine receptor gene.", "journal": "Biochemistry", "date": "1996", "authors": "Samson M, Labbe O, Mollereau C, Vassart G, Parmentier M", "reference": { "type": "PubMed", "id": "8639485", "url": "https://pubmed.ncbi.nlm.nih.gov/8639485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8639485", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The CXC chemokine SDF-1 is the ligand for LESTR/fusin and prevents infection by T-cell-line-adapted HIV-1.", "journal": "Nature", "date": "1996-08-29", "authors": "Oberlin E, Amara A, Bachelerie F, Bessia C, Virelizier J L, Arenzana-Seisdedos F, Schwartz O, Heard J M, Clark-Lewis I, Legler D F, Loetscher M, Baggiolini M, Moser B", "reference": { "type": "PubMed", "id": "8752281", "url": "https://pubmed.ncbi.nlm.nih.gov/8752281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and expression of two highly related genes encoding SCM-1/human lymphotactin.", "journal": "FEBS letters", "date": "1996", "authors": "Yoshida T, Imai T, Takagi S, Nishimura M, Ishikawa I, Yaoi T, Yoshie O", "reference": { "type": "PubMed", "id": "8849694", "url": "https://pubmed.ncbi.nlm.nih.gov/8849694" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8849694", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A new class of membrane-bound chemokine with a CX3C motif.", "journal": "Nature", "date": "1997", "authors": "Bazan JF, Bacon KB, Hardiman G, Wang W, Soo K, Rossi D, Greaves DR, Zlotnik A, Schall TJ", "reference": { "type": "PubMed", "id": "9024663", "url": "https://pubmed.ncbi.nlm.nih.gov/9024663" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9024663", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of the human granulocyte chemotactic protein-2 gene.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "1997", "authors": "Rovai LE, Herschman HR, Smith JB", "reference": { "type": "PubMed", "id": "9164944", "url": "https://pubmed.ncbi.nlm.nih.gov/9164944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9164944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { 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line-tropic HIV-1.", "journal": "The Journal of experimental medicine", "date": "1997", "authors": "Liao F, Alkhatib G, Peden KW, Sharma G, Berger EA, Farber JM", "reference": { "type": "PubMed", "id": "9166430", "url": "https://pubmed.ncbi.nlm.nih.gov/9166430" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": 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"gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine 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"https://pubmed.ncbi.nlm.nih.gov/9169459" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of CCR8: a human monocyte and thymus receptor for the CC chemokine I-309.", "journal": "The Journal of experimental medicine", "date": "1997", "authors": "Tiffany HL, Lautens LL, Gao JL, Pease J, Locati M, Combadiere C, Modi W, Bonner TI, Murphy PM", "reference": { "type": "PubMed", "id": "9207005", "url": "https://pubmed.ncbi.nlm.nih.gov/9207005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9207005", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High expression of the chemokine receptor CCR3 in human blood basophils. Role in activation by eotaxin, MCP-4, and other chemokines.", "journal": "The Journal of clinical investigation", "date": "1997", "authors": "Uguccioni M, Mackay CR, Ochensberger B, Loetscher P, Rhis S, LaRosa GJ, Rao P, Ponath PD, Baggiolini M, Dahinden CA", "reference": { "type": "PubMed", "id": "9276730", "url": "https://pubmed.ncbi.nlm.nih.gov/9276730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": "CCL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X3-1", "protein_name": "C-C motif chemokine 27", "gene_name": "CCL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19875-1", "protein_name": "C-X-C motif chemokine 2", "gene_name": "CXCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42830-1", "protein_name": "C-X-C motif chemokine 5", "gene_name": "CXCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02778-1", "protein_name": "C-X-C motif chemokine 10", "gene_name": "CXCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A7-1", "protein_name": "C-X-C motif chemokine 16", "gene_name": "CXCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBD3-1", "protein_name": "Cytokine SCM-1 beta", "gene_name": "XCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46094-1", "protein_name": "Chemokine XC receptor 1", "gene_name": "XCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78423-1", "protein_name": "Fractalkine", "gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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Med.", "date": "1998", "authors": "Donzella G A, Schols D, Lin S W, Est\u00e9 J A, Nagashima K A, Maddon P J, Allaway G P, Sakmar T P, Henson G, De Clercq E, Moore J P", "reference": { "type": "PubMed", "id": "9427609", "url": "https://pubmed.ncbi.nlm.nih.gov/9427609" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9427609", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"uniprot_canonical_ac": "P80098-1", "protein_name": "C-C motif chemokine 7", "gene_name": "CCL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99616-1", "protein_name": "C-C motif chemokine 13", "gene_name": "CCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00585-1", "protein_name": "C-C motif chemokine 21", "gene_name": "CCL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10147-1", "protein_name": "C-C motif chemokine 3", "gene_name": "CCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78556-1", "protein_name": "C-C motif chemokine 20", "gene_name": "CCL20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32302-1", "protein_name": "C-X-C chemokine receptor type 5", "gene_name": "CXCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80162-1", "protein_name": "C-X-C motif chemokine 6", "gene_name": "CXCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14625-1", "protein_name": "C-X-C motif chemokine 11", "gene_name": "CXCL11", "tax_name": 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"Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet basic protein", "gene_name": "PPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19876-1", "protein_name": "C-X-C motif chemokine 3", "gene_name": "CXCL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49682-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "CXCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00574-1", "protein_name": "C-X-C chemokine receptor type 6", "gene_name": "CXCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25024-1", "protein_name": "C-X-C chemokine receptor type 1", "gene_name": "CXCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07325-1", "protein_name": "C-X-C motif chemokine 9", "gene_name": "CXCL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09341-1", "protein_name": "Growth-regulated alpha protein", "gene_name": "CXCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47992-1", "protein_name": "Lymphotactin", "gene_name": "XCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15444-1", "protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51685-1", "protein_name": "C-C chemokine receptor type 8", "gene_name": "CCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16619-1", "protein_name": "C-C motif chemokine 3-like 1", "gene_name": "CCL3L1; CCL3L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25106-1", "protein_name": "Atypical chemokine receptor 3", "gene_name": "ACKR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00590-1", "protein_name": "Atypical chemokine receptor 2", "gene_name": "ACKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P48061", "url": "https://www.uniprot.org/uniprotkb/P48061" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9463416", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 57 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Natl. Acad. Sci. U.S.A.", "date": "1998", "authors": "Dealwis C, Fernandez EJ, Thompson DA, Simon RJ, Siani MA, Lolis E", "reference": { "type": "PubMed", "id": "9618518", "url": "https://pubmed.ncbi.nlm.nih.gov/9618518" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32246-1", "protein_name": "C-C chemokine receptor type 1", "gene_name": "CCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51684-1", "protein_name": "C-C chemokine receptor type 6", "gene_name": "CCR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99731-1", "protein_name": "C-C motif chemokine 19", "gene_name": "CCL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRJ3-1", "protein_name": "C-C motif chemokine 28", "gene_name": 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"gene_name": "CX3CL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPB9-1", "protein_name": "Atypical chemokine receptor 4", "gene_name": "ACKR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46092-1", "protein_name": "C-C chemokine receptor type 10", "gene_name": "CCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25025-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "CXCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43927-1", "protein_name": "C-X-C motif chemokine 13", "gene_name": "CXCL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02775-1", "protein_name": "Platelet 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"protein_name": "C-C motif chemokine 25", "gene_name": "CCL25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51686-1", "protein_name": "C-C chemokine receptor type 9", "gene_name": "CCR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13501-1", "protein_name": "C-C motif chemokine 5", "gene_name": "CCL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22362-1", "protein_name": "C-C motif chemokine 1", "gene_name": "CCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92583-1", "protein_name": "C-C motif chemokine 17", "gene_name": "CCL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15467-1", "protein_name": "C-C motif chemokine 16", "gene_name": "CCL16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51677-1", "protein_name": "C-C chemokine receptor type 3", "gene_name": "CCR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51679-1", "protein_name": "C-C chemokine receptor type 4", "gene_name": "CCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51681-1", "protein_name": "C-C chemokine receptor type 5", "gene_name": "CCR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13236-1", "protein_name": "C-C motif chemokine 4", "gene_name": "CCL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00421-1", "protein_name": "C-C chemokine receptor-like 2", "gene_name": "CCRL2", 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Mol. Genet.", "date": "1999", "authors": "Chang J T, Esumi N, Moore K, Li Y, Zhang S, Chew C, Goodman B, Rattner A, Moody S, Stetten G, Campochiaro P A, Zack D J", "reference": { "type": "PubMed", "id": "10072424", "url": "https://pubmed.ncbi.nlm.nih.gov/10072424" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5T4F7-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "SFRP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9XSC1-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "SFRP5", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9WU66-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "Sfrp5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z1N6-1", "protein_name": "Secreted frizzled-related sequence protein 4", "gene_name": "Sfrp4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5T4F7", "url": 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metabolism: Current findings and potential applications.", "journal": "Progress in molecular biology and translational science", "date": "2023", "authors": "Chu DT, Nguyen TL", "reference": { "type": "PubMed", "id": "36631199", "url": "https://pubmed.ncbi.nlm.nih.gov/36631199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5T4F7-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "SFRP5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5T4F7", "url": "https://www.uniprot.org/uniprotkb/Q5T4F7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36631199", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"Secreted frizzled-related protein 5 overexpression reverses oxLDL-induced lipid accumulation in human vascular smooth muscle cells.", "journal": "Bioscience, biotechnology, and biochemistry", "date": "2024-06-21", "authors": "Wang Xiaogao, Chen Shiyuan, Yu Chaowen, Lu Ran, Sun Yong, Guan Zeyu, Gao Yong", "reference": { "type": "PubMed", "id": "38714325", "url": "https://pubmed.ncbi.nlm.nih.gov/38714325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5T4F7-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "SFRP5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5T4F7", "url": "https://www.uniprot.org/uniprotkb/Q5T4F7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38714325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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U.S.A.", "date": "1997", "authors": "Melkonyan H S, Chang W C, Shapiro J P, Mahadevappa M, Fitzpatrick P A, Kiefer M C, Tomei L D, Umansky S R", "reference": { "type": "PubMed", "id": "9391078", "url": "https://pubmed.ncbi.nlm.nih.gov/9391078" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5T4F7-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "SFRP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HF1-1", "protein_name": "Secreted frizzled-related protein 2", "gene_name": "SFRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N474-1", "protein_name": "Secreted frizzled-related protein 1", "gene_name": "SFRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P97299-1", "protein_name": "Secreted frizzled-related protein 2", "gene_name": "Sfrp2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5T4F7", "url": "https://www.uniprot.org/uniprotkb/Q5T4F7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9391078", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tissue restricted expression of two human Frzbs in preadipocytes and pancreas.", "journal": "Biochem. Biophys. Res. Commun.", "date": "1998", "authors": "Hu E, Zhu Y, Fredrickson T, Barnes M, Kelsell D, Beeley L, Brooks D", "reference": { "type": "PubMed", "id": "9642118", "url": "https://pubmed.ncbi.nlm.nih.gov/9642118" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5T4F7-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "SFRP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HF1-1", "protein_name": "Secreted frizzled-related protein 2", "gene_name": "SFRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5T4F7", "url": "https://www.uniprot.org/uniprotkb/Q5T4F7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9642118", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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nucleotide excision repair.", "journal": "Mutation research", "date": "1999", "authors": "Araujo SJ, Wood RD", "reference": { "type": "PubMed", "id": "10526214", "url": "https://pubmed.ncbi.nlm.nih.gov/10526214" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10526214", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": 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"glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cell cycle regulation of PML modification and ND10 composition.", "journal": "Journal of cell science", "date": "1999", "authors": "Everett RD, Lomonte P, Sternsdorf T, van Driel R, Orr A", "reference": { "type": "PubMed", "id": "10574707", "url": "https://pubmed.ncbi.nlm.nih.gov/10574707" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13569-1", "protein_name": "G/T 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"protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { 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"Cyclin-dependent kinase inhibitor 2A", "gene_name": "CDKN2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14676-1", "protein_name": "Mediator of DNA damage checkpoint protein 1", "gene_name": "MDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54132-1", "protein_name": "RecQ-like DNA helicase BLM", "gene_name": "BLM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14191-1", "protein_name": "Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN", "gene_name": "WRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF7-1", "protein_name": "E3 SUMO-protein ligase NSE2", "gene_name": "NSMCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WV22-1", "protein_name": "Non-structural maintenance of chromosomes element 1 homolog", "gene_name": "NSMCE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUI4-1", "protein_name": "Histone deacetylase 7", "gene_name": "HDAC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": 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"RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYW5-1", "protein_name": "E3 ubiquitin-protein ligase RNF168", "gene_name": "RNF168", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43351-1", "protein_name": "DNA repair protein RAD52 homolog", "gene_name": "RAD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95714-1", "protein_name": "E3 ubiquitin-protein ligase HERC2", "gene_name": "HERC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MG7-1", "protein_name": "Non-structural maintenance of chromosomes element 3 homolog", "gene_name": "NSMCE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N140-1", "protein_name": "EP300-interacting inhibitor of differentiation 3", "gene_name": "EID3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38398-1", "protein_name": "Breast cancer type 1 susceptibility protein", "gene_name": "BRCA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10574707", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 72 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional heterogeneity of small ubiquitin-related protein modifiers SUMO-1 versus SUMO-2/3.", "journal": "J. Biol. Chem.", "date": "2000", "authors": "Saitoh H, Hinchey J", "reference": { "type": "PubMed", "id": "10692421", "url": "https://pubmed.ncbi.nlm.nih.gov/10692421" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10692421", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The xeroderma pigmentosum group C protein complex XPC-HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Yokoi M, Masutani C, Maekawa T, Sugasawa K, Ohkuma Y, Hanaoka F", "reference": { "type": "PubMed", "id": "10734143", "url": "https://pubmed.ncbi.nlm.nih.gov/10734143" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10734143", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUMO-1 conjugation to topoisomerase I: A possible repair response to topoisomerase-mediated DNA damage.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000", "authors": "Mao Y, Sun M, Desai SD, Liu LF", "reference": { "type": "PubMed", "id": "10759568", "url": "https://pubmed.ncbi.nlm.nih.gov/10759568" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11388-1", "protein_name": "DNA topoisomerase 2-alpha", "gene_name": "TOP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15392-1", "protein_name": "Baculoviral IAP repeat-containing protein 5", "gene_name": "BIRC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQS7-1", "protein_name": "Inner centromere protein", "gene_name": "INCENP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11387-1", "protein_name": "DNA topoisomerase 1", "gene_name": "TOP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GD4-1", "protein_name": "Aurora kinase B", "gene_name": "AURKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53HL2-1", "protein_name": "Borealin", "gene_name": "CDCA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46060-1", "protein_name": "Ran GTPase-activating protein 1", "gene_name": "RANGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02880-1", "protein_name": "DNA topoisomerase 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"gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10759568", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUMO-1 conjugation to human DNA topoisomerase II isozymes.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Mao Y, Desai SD, Liu LF", "reference": { "type": "PubMed", "id": "10862613", "url": "https://pubmed.ncbi.nlm.nih.gov/10862613" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11388-1", "protein_name": "DNA topoisomerase 2-alpha", "gene_name": "TOP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15392-1", "protein_name": "Baculoviral IAP repeat-containing protein 5", "gene_name": "BIRC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQS7-1", "protein_name": "Inner centromere protein", "gene_name": "INCENP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11387-1", "protein_name": "DNA topoisomerase 1", "gene_name": "TOP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GD4-1", "protein_name": "Aurora kinase B", "gene_name": "AURKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53HL2-1", "protein_name": "Borealin", "gene_name": "CDCA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46060-1", "protein_name": "Ran GTPase-activating protein 1", "gene_name": "RANGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02880-1", "protein_name": "DNA topoisomerase 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"gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10862613", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular structure of human TFIIH.", "journal": "Cell", "date": "2000", "authors": "Schultz P, Fribourg S, Poterszman A, Mallouh V, Moras D, Egly JM", "reference": { "type": "PubMed", "id": "11007478", "url": "https://pubmed.ncbi.nlm.nih.gov/11007478" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11007478", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Covalent modification of the androgen receptor by small ubiquitin-like modifier 1 (SUMO-1).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000", "authors": "Poukka H, Karvonen U, Janne OA, Palvimo JJ", "reference": { "type": "PubMed", "id": "11121022", "url": "https://pubmed.ncbi.nlm.nih.gov/11121022" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04150-1", "protein_name": "Glucocorticoid receptor", "gene_name": "NR3C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10276-1", "protein_name": "Retinoic acid receptor alpha", "gene_name": "RARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37231-1", "protein_name": "Peroxisome proliferator-activated receptor gamma", "gene_name": "PPARG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07869-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "PPARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55055-1", "protein_name": "Oxysterols receptor LXR-beta", "gene_name": "NR1H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35398-2", "protein_name": "Nuclear receptor ROR-alpha", "gene_name": "RORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13285-1", "protein_name": "Steroidogenic factor 1", "gene_name": "NR5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10828-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "THRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11473-1", "protein_name": "Vitamin D3 receptor", "gene_name": "VDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08235-1", "protein_name": "Mineralocorticoid receptor", "gene_name": "NR3C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13056-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "NR2C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43354-1", "protein_name": "Nuclear receptor subfamily 4 group A member 2", "gene_name": "NR4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10275-1", "protein_name": "Androgen receptor", "gene_name": "AR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11121022", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUMO-1 conjugation in vivo requires both a consensus modification motif and nuclear targeting.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Rodriguez MS, Dargemont C, Hay RT", "reference": { "type": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14164-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase subunit epsilon", "gene_name": "IKBKE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25963-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "NFKBIA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00653-1", "protein_name": "Nuclear factor NF-kappa-B p100 subunit", "gene_name": "NFKB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19525-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "EIF2AK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K9-1", "protein_name": "NF-kappa-B essential modulator", "gene_name": "IKBKG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04206-1", "protein_name": "Transcription factor p65", "gene_name": "RELA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 21, "end_pos": 21, "sequence_org": "K", "sequence_mut": "R", "comment": "Little change in Tax-stimulated transactivation. No sumoylation. Greatly reduced Tax- or cytokine-stimulated transactivation and decrease in ubiquitination and degradation; when associated with R-22. Does not affect activation by FK506.", "evidence": [ { "database": "UniProtKB", "id": "P25963", "url": "https://www.uniprot.org/uniprotkb/P25963" }, { "database": "PubMed", "id": "7479976", "url": "https://pubmed.ncbi.nlm.nih.gov/7479976" }, { "database": "PubMed", "id": "17956732", "url": "https://pubmed.ncbi.nlm.nih.gov/17956732" }, { "database": "PubMed", "id": "8657102", "url": "https://pubmed.ncbi.nlm.nih.gov/8657102" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P25963-1" }, { "start_pos": 22, "end_pos": 22, "sequence_org": "K", "sequence_mut": "R", "comment": "Little change in Tax-stimulated transactivation. No sumoylation. Greatly reduced Tax- or cytokine-stimulated transactivation and decrease in ubiquitination and degradation; when associated with R-21. Does not affect activation by FK506.", "evidence": [ { "database": "UniProtKB", "id": "P25963", "url": "https://www.uniprot.org/uniprotkb/P25963" }, { "database": "PubMed", "id": "7479976", "url": "https://pubmed.ncbi.nlm.nih.gov/7479976" }, { "database": "PubMed", "id": "17956732", "url": "https://pubmed.ncbi.nlm.nih.gov/17956732" }, { "database": "PubMed", "id": "8657102", "url": "https://pubmed.ncbi.nlm.nih.gov/8657102" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P25963-1" }, { "start_pos": 385, "end_pos": 385, "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced SUMO1 conjugation.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "10884347", "url": "https://pubmed.ncbi.nlm.nih.gov/10884347" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" }, { "start_pos": 386, "end_pos": 386, "sequence_org": "K", "sequence_mut": "A", "comment": "Abolishes SUMO1 conjugation, in vitro and in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" }, { "start_pos": 387, "end_pos": 387, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect SUMO1 conjugation.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" }, { "start_pos": 388, "end_pos": 388, "sequence_org": "E", "sequence_mut": "A", "comment": "Abolishes SUMO1 conjugation.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" }, { "start_pos": 385, "end_pos": 385, "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced SUMO1 conjugation.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "10884347", "url": "https://pubmed.ncbi.nlm.nih.gov/10884347" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" }, { "start_pos": 386, "end_pos": 386, "sequence_org": "K", "sequence_mut": "A", "comment": "Abolishes SUMO1 conjugation, in vitro and in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" }, { "start_pos": 387, "end_pos": 387, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect SUMO1 conjugation.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" }, { "start_pos": 388, "end_pos": 388, "sequence_org": "E", "sequence_mut": "A", "comment": "Abolishes SUMO1 conjugation.", "evidence": [ { "database": "UniProtKB", "id": "P04637", "url": "https://www.uniprot.org/uniprotkb/P04637" }, { "database": "PubMed", "id": "11124955", "url": "https://pubmed.ncbi.nlm.nih.gov/11124955" } ], "uniprot_canonical_ac": "P04637-1" } ], "record_id": "pubmed.11124955", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel functional interactions between nucleotide excision DNA repair proteins influencing the enzymatic activities of TFIIH, XPG, and ERCC1-XPF.", "journal": "Biochemistry", "date": "2001", "authors": "Winkler GS, Sugasawa K, Eker AP, de Laat WL, Hoeijmakers JH", "reference": { "type": "PubMed", "id": "11141066", "url": "https://pubmed.ncbi.nlm.nih.gov/11141066" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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"Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11141066", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Damaged DNA-binding protein DDB stimulates the excision of cyclobutane pyrimidine dimers in vitro in concert with XPA and replication protein A.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Wakasugi M, Shimizu M, Morioka H, Linn S, Nikaido O, Matsunaga T", "reference": { "type": "PubMed", "id": "11278856", "url": "https://pubmed.ncbi.nlm.nih.gov/11278856" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11278856", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polymeric chains of SUMO-2 and SUMO-3 are conjugated to protein substrates by SAE1/SAE2 and Ubc9.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Tatham MH, Jaffray E, Vaughan OA, Desterro JM, Botting CH, Naismith JH, Hay RT", "reference": { "type": "PubMed", "id": "11451954", "url": "https://pubmed.ncbi.nlm.nih.gov/11451954" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" 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"Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 11, "end_pos": 11, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes the formation of poly(SUMO) chains.", "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" }, { "database": "PubMed", "id": "11451954", "url": "https://pubmed.ncbi.nlm.nih.gov/11451954" } ], "uniprot_canonical_ac": "P55854-1" }, { "start_pos": 11, "end_pos": 11, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes the formation of poly(SUMO) chains.", "evidence": [ { "database": "UniProtKB", "id": "P61956", "url": "https://www.uniprot.org/uniprotkb/P61956" }, { "database": "PubMed", "id": "11451954", "url": "https://pubmed.ncbi.nlm.nih.gov/11451954" } ], "uniprot_canonical_ac": "P61956-1" } ], "record_id": "pubmed.11451954", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DJ-1 positively regulates the androgen receptor by impairing the binding of PIASx alpha to the receptor.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Takahashi K, Taira T, Niki T, Seino C, Iguchi-Ariga SM, Ariga H", "reference": { "type": "PubMed", "id": "11477070", "url": "https://pubmed.ncbi.nlm.nih.gov/11477070" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99497-1", "protein_name": "Parkinson disease protein 7", "gene_name": "PARK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969V6-1", "protein_name": "Myocardin-related transcription factor A", "gene_name": "MRTFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92841-4", "protein_name": "Probable ATP-dependent RNA helicase DDX17", "gene_name": "DDX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13263-1", "protein_name": "Transcription intermediary factor 1-beta", "gene_name": "TRIM28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2X6-1", "protein_name": "Homeodomain-interacting protein kinase 2", "gene_name": "HIPK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST3-1", "protein_name": "Paired amphipathic helix protein Sin3a", "gene_name": "SIN3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H160-1", "protein_name": "Inhibitor of growth protein 2", "gene_name": "ING2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13363-1", "protein_name": "C-terminal-binding protein 1", "gene_name": "CTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBK2-1", "protein_name": "Peroxisome proliferator-activated receptor gamma coactivator 1-alpha", "gene_name": "PPARGC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX5-1", "protein_name": "Zinc finger protein 350", "gene_name": "ZNF350", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UIS9-1", "protein_name": "Methyl-CpG-binding domain protein 1", "gene_name": "MBD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL3-1", "protein_name": "CASP8-associated protein 2", "gene_name": "CASP8AP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52739-1", "protein_name": "Zinc finger protein 131", "gene_name": "ZNF131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU4-1", "protein_name": "E3 ubiquitin-protein ligase UHRF2", "gene_name": "UHRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15424-1", "protein_name": "Scaffold attachment factor B1", "gene_name": "SAFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75928-1", "protein_name": "E3 SUMO-protein ligase PIAS2", "gene_name": "PIAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11477070", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequential assembly of the nucleotide excision repair factors in vivo.", "journal": "Molecular cell", "date": "2001", "authors": "Volker M, Mone MJ, Karmakar P, van Hoffen A, Schul W, Vermeulen W, Hoeijmakers JH, van Driel R, van Zeeland AA, Mullenders LH", "reference": { "type": "PubMed", "id": "11511374", "url": "https://pubmed.ncbi.nlm.nih.gov/11511374" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { 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} ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleolar delocalization of human topoisomerase I in response to topotecan correlates with sumoylation of the protein.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Mo YY, Yu Y, Shen Z, Beck WT", "reference": { "type": "PubMed", "id": "11709553", "url": "https://pubmed.ncbi.nlm.nih.gov/11709553" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": 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"protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15392-1", "protein_name": "Baculoviral IAP repeat-containing protein 5", "gene_name": "BIRC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQS7-1", "protein_name": "Inner centromere protein", "gene_name": "INCENP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11387-1", "protein_name": "DNA topoisomerase 1", "gene_name": "TOP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GD4-1", "protein_name": "Aurora kinase B", "gene_name": "AURKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53HL2-1", "protein_name": "Borealin", "gene_name": "CDCA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46060-1", "protein_name": "Ran GTPase-activating protein 1", "gene_name": "RANGAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02880-1", "protein_name": "DNA topoisomerase 2-beta", "gene_name": "TOP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11709553", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29590-1", "protein_name": "Protein PML", "gene_name": "PML", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY18-1", "protein_name": "Structural maintenance of chromosomes protein 5", "gene_name": "SMC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42771-1", "protein_name": "Cyclin-dependent kinase inhibitor 2A", "gene_name": "CDKN2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14676-1", "protein_name": "Mediator of DNA damage checkpoint protein 1", "gene_name": "MDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54132-1", "protein_name": "RecQ-like DNA helicase BLM", "gene_name": "BLM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14191-1", "protein_name": "Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN", "gene_name": "WRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF7-1", "protein_name": "E3 SUMO-protein ligase NSE2", "gene_name": "NSMCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WV22-1", "protein_name": "Non-structural maintenance of chromosomes element 1 homolog", "gene_name": "NSMCE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUI4-1", "protein_name": "Histone deacetylase 7", "gene_name": "HDAC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13426-1", "protein_name": "DNA repair protein XRCC4", "gene_name": "XRCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYW5-1", "protein_name": "E3 ubiquitin-protein ligase RNF168", "gene_name": "RNF168", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43351-1", "protein_name": "DNA repair protein RAD52 homolog", "gene_name": "RAD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95714-1", "protein_name": "E3 ubiquitin-protein ligase HERC2", "gene_name": "HERC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MG7-1", "protein_name": "Non-structural maintenance of chromosomes element 3 homolog", "gene_name": "NSMCE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N140-1", "protein_name": "EP300-interacting inhibitor of differentiation 3", "gene_name": "EID3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38398-1", "protein_name": "Breast cancer type 1 susceptibility protein", "gene_name": "BRCA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11792325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 73 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The insulin-sensitive glucose transporter, GLUT4, interacts physically with Daxx. Two proteins with capacity to bind Ubc9 and conjugated to SUMO1.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Lalioti VS, Vergarajauregui S, Pulido D, Sandoval IV", "reference": { "type": "PubMed", "id": "11842083", "url": "https://pubmed.ncbi.nlm.nih.gov/11842083" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99497-1", "protein_name": "Parkinson disease protein 7", "gene_name": "PARK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969V6-1", "protein_name": "Myocardin-related transcription factor A", "gene_name": "MRTFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92841-4", "protein_name": "Probable ATP-dependent RNA helicase DDX17", "gene_name": "DDX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13263-1", "protein_name": "Transcription intermediary factor 1-beta", "gene_name": "TRIM28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2X6-1", "protein_name": "Homeodomain-interacting protein kinase 2", "gene_name": "HIPK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14672-1", "protein_name": "Solute carrier family 2, facilitated glucose transporter member 4", "gene_name": "SLC2A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST3-1", "protein_name": "Paired amphipathic helix protein Sin3a", "gene_name": "SIN3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H160-1", "protein_name": "Inhibitor of growth protein 2", "gene_name": "ING2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13363-1", "protein_name": "C-terminal-binding protein 1", "gene_name": "CTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBK2-1", "protein_name": "Peroxisome proliferator-activated receptor gamma coactivator 1-alpha", "gene_name": "PPARGC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX5-1", "protein_name": "Zinc finger protein 350", "gene_name": "ZNF350", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UIS9-1", "protein_name": "Methyl-CpG-binding domain protein 1", "gene_name": "MBD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL3-1", "protein_name": "CASP8-associated protein 2", "gene_name": "CASP8AP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52739-1", "protein_name": "Zinc finger protein 131", "gene_name": "ZNF131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU4-1", "protein_name": "E3 ubiquitin-protein ligase UHRF2", "gene_name": "UHRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15424-1", "protein_name": "Scaffold 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"uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYW5-1", "protein_name": "E3 ubiquitin-protein ligase RNF168", "gene_name": "RNF168", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43351-1", "protein_name": "DNA repair protein RAD52 homolog", "gene_name": "RAD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUMO-1 modification of histone deacetylase 1 (HDAC1) modulates its biological activities.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "David G, Neptune MA, DePinho RA", "reference": { "type": "PubMed", "id": "11960997", "url": "https://pubmed.ncbi.nlm.nih.gov/11960997" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969R5-1", 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"ZBED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45973-1", "protein_name": "Chromobox protein homolog 5", "gene_name": "CBX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": 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"protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW6-1", "protein_name": "DNA-binding protein SATB2", "gene_name": "SATB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15022-1", "protein_name": "Polycomb protein SUZ12", "gene_name": "SUZ12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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of the HDAC4 deacetylase.", "journal": "The EMBO journal", "date": "2002", "authors": "Kirsh O, Seeler JS, Pichler A, Gast A, Muller S, Miska E, Mathieu M, Harel-Bellan A, Kouzarides T, Melchior F, Dejean A", "reference": { "type": "PubMed", "id": "12032081", "url": "https://pubmed.ncbi.nlm.nih.gov/12032081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969R5-1", "protein_name": "Lethal(3)malignant brain tumor-like protein 2", "gene_name": "L3MBTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein 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"uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBN7-1", "protein_name": "Protein deacetylase HDAC6", "gene_name": "HDAC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01826-1", "protein_name": "DNA-binding protein SATB1", "gene_name": "SATB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15379-1", "protein_name": "Histone deacetylase 3", "gene_name": "HDAC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "O96006-1", "protein_name": "E3 SUMO-protein ligase ZBED1", "gene_name": "ZBED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45973-1", "protein_name": "Chromobox protein homolog 5", "gene_name": "CBX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12873-1", "protein_name": "ATP-dependent chromatin remodeler CHD3", "gene_name": "CHD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV0-1", "protein_name": "Histone deacetylase 9", "gene_name": "HDAC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92769-1", "protein_name": "Histone deacetylase 2", "gene_name": "HDAC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW6-1", "protein_name": "DNA-binding protein SATB2", "gene_name": "SATB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15022-1", "protein_name": "Polycomb protein SUZ12", "gene_name": "SUZ12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 559, "end_pos": 559, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes sumoylation and reduces the histone deacetylase activity.", "evidence": [ { "database": "UniProtKB", "id": "P56524", "url": "https://www.uniprot.org/uniprotkb/P56524" }, { "database": "PubMed", "id": "12032081", "url": "https://pubmed.ncbi.nlm.nih.gov/12032081" } ], "uniprot_canonical_ac": "P56524-1" } ], "record_id": "pubmed.12032081", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 56 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcription factor AP-2 interacts with the SUMO-conjugating enzyme UBC9 and is sumolated in vivo.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Eloranta JJ, Hurst HC", "reference": { "type": "PubMed", "id": "12072434", "url": "https://pubmed.ncbi.nlm.nih.gov/12072434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92481-1", "protein_name": "Transcription factor AP-2-beta", "gene_name": "TFAP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13330-1", "protein_name": "Metastasis-associated protein MTA1", "gene_name": "MTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92754-1", "protein_name": "Transcription factor AP-2 gamma", "gene_name": "TFAP2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14526-1", "protein_name": "Hypermethylated in cancer 1 protein", "gene_name": "HIC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75030-1", "protein_name": "Microphthalmia-associated transcription factor", "gene_name": "MITF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42771-1", "protein_name": "Cyclin-dependent kinase inhibitor 2A", "gene_name": "CDKN2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58012-1", "protein_name": "Forkhead box protein L2", "gene_name": "FOXL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12888-1", "protein_name": "TP53-binding protein 1", "gene_name": "TP53BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05549-1", "protein_name": "Transcription factor AP-2-alpha", "gene_name": "TFAP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02447-1", "protein_name": "Transcription factor Sp3", "gene_name": "SP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00987-1", "protein_name": "E3 ubiquitin-protein ligase Mdm2", "gene_name": "MDM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12072434", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PIAS proteins modulate transcription factors by functioning as SUMO-1 ligases.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Kotaja N, Karvonen U, Janne OA, Palvimo JJ", "reference": { "type": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04150-1", "protein_name": "Glucocorticoid receptor", "gene_name": "NR3C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10276-1", "protein_name": "Retinoic acid receptor alpha", "gene_name": "RARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37231-1", "protein_name": "Peroxisome proliferator-activated receptor gamma", "gene_name": "PPARG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07869-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "PPARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O88907-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "Pias1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P55055-1", "protein_name": "Oxysterols receptor LXR-beta", "gene_name": "NR1H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O54714-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "Pias3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35398-2", "protein_name": "Nuclear receptor ROR-alpha", "gene_name": "RORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13285-1", "protein_name": "Steroidogenic factor 1", "gene_name": "NR5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10828-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "THRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11473-1", "protein_name": "Vitamin D3 receptor", "gene_name": "VDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08235-1", "protein_name": "Mineralocorticoid receptor", "gene_name": "NR3C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13056-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "NR2C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43354-1", "protein_name": "Nuclear receptor subfamily 4 group A member 2", "gene_name": "NR4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8C5D8-1", "protein_name": "E3 SUMO-protein ligase PIAS2", "gene_name": "Pias2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AZ28-1", "protein_name": "E3 SUMO-protein ligase PIAS2", "gene_name": "Pias2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10275-1", "protein_name": "Androgen receptor", "gene_name": "AR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 372, "end_pos": 372, "sequence_org": "W", "sequence_mut": "A", "comment": "Loss of promotion of NCOA2 sumoylation. No effect on interaction with MSX1 or localization of either protein at the nuclear periphery.", "evidence": [ { "database": "UniProtKB", "id": "O88907", "url": "https://www.uniprot.org/uniprotkb/O88907" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" }, { "database": "PubMed", "id": "16600910", "url": "https://pubmed.ncbi.nlm.nih.gov/16600910" } ], "uniprot_canonical_ac": "O88907-1" }, { "start_pos": 324, "end_pos": 324, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-326.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 326, "end_pos": 326, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-324.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 379, "end_pos": 379, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-380.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 380, "end_pos": 380, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-379.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 383, "end_pos": 383, "sequence_org": "W", "sequence_mut": "A", "comment": "Loss of promotion of JUN sumoylation; no loss of interaction with SUMO1 and UBE2I.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 390, "end_pos": 390, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-391.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 391, "end_pos": 391, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-390.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 430, "end_pos": 430, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-431.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" }, { "start_pos": 431, "end_pos": 431, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on auto-sumoylation; when associated with R-430.", "evidence": [ { "database": "UniProtKB", "id": "Q6AZ28", "url": "https://www.uniprot.org/uniprotkb/Q6AZ28" }, { "database": "PubMed", "id": "12077349", "url": "https://pubmed.ncbi.nlm.nih.gov/12077349" } ], "uniprot_canonical_ac": "Q6AZ28-1" } ], "record_id": "pubmed.12077349", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 28 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p52 Mediates XPB function within the transcription/repair factor TFIIH.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Jawhari A, Laine JP, Dubaele S, Lamour V, Poterszman A, Coin F, Moras D, Egly JM", "reference": { "type": "PubMed", "id": "12080057", "url": "https://pubmed.ncbi.nlm.nih.gov/12080057" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12080057", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Small ubiquitin-related modifier-1 (SUMO-1) modification of the glucocorticoid receptor.", "journal": "The Biochemical journal", "date": "2002", "authors": "Tian S, Poukka H, Palvimo JJ, Janne OA", "reference": { "type": "PubMed", "id": "12144530", "url": "https://pubmed.ncbi.nlm.nih.gov/12144530" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04150-1", "protein_name": "Glucocorticoid receptor", "gene_name": "NR3C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10276-1", "protein_name": "Retinoic acid receptor alpha", "gene_name": "RARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37231-1", "protein_name": "Peroxisome proliferator-activated receptor gamma", "gene_name": "PPARG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07869-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "PPARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55055-1", "protein_name": "Oxysterols receptor LXR-beta", "gene_name": "NR1H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35398-2", "protein_name": "Nuclear receptor ROR-alpha", "gene_name": "RORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13285-1", "protein_name": "Steroidogenic factor 1", "gene_name": "NR5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10828-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "THRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11473-1", "protein_name": "Vitamin D3 receptor", "gene_name": "VDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08235-1", "protein_name": "Mineralocorticoid receptor", "gene_name": "NR3C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13056-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "NR2C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43354-1", "protein_name": "Nuclear receptor subfamily 4 group A member 2", "gene_name": "NR4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10275-1", "protein_name": "Androgen receptor", "gene_name": "AR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 277, "end_pos": 277, "sequence_org": "K", "sequence_mut": "R", "comment": "Strongly reduces sumoylation. Almost complete loss of sumoylation; when associated with R-293.", "evidence": [ { "database": "UniProtKB", "id": "P04150", "url": "https://www.uniprot.org/uniprotkb/P04150" }, { "database": "PubMed", "id": "12144530", "url": "https://pubmed.ncbi.nlm.nih.gov/12144530" } ], "uniprot_canonical_ac": "P04150-1" }, { "start_pos": 293, "end_pos": 293, "sequence_org": "K", "sequence_mut": "R", "comment": "Strongly reduces sumoylation. Almost complete loss of sumoylation; when associated with R-277.", "evidence": [ { "database": "UniProtKB", "id": "P04150", "url": "https://www.uniprot.org/uniprotkb/P04150" }, { "database": "PubMed", "id": "12144530", "url": "https://pubmed.ncbi.nlm.nih.gov/12144530" } ], "uniprot_canonical_ac": "P04150-1" }, { "start_pos": 703, "end_pos": 703, "sequence_org": "K", "sequence_mut": "R", "comment": "Slightly reduces sumoylation. Inhibits the stimulatory effect of RWDD3 on its transcriptional activity.", "evidence": [ { "database": "UniProtKB", "id": "P04150", "url": "https://www.uniprot.org/uniprotkb/P04150" }, { "database": "PubMed", "id": "23508108", "url": "https://pubmed.ncbi.nlm.nih.gov/23508108" }, { "database": "PubMed", "id": "12144530", "url": "https://pubmed.ncbi.nlm.nih.gov/12144530" } ], "uniprot_canonical_ac": "P04150-1" } ], "record_id": "pubmed.12144530", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sumoylation of topoisomerase I is involved in its partitioning between nucleoli and nucleoplasm and its clearing from nucleoli in response to camptothecin.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Rallabhandi P, Hashimoto K, Mo YY, Beck WT, Moitra PK, D'Arpa P", "reference": { "type": "PubMed", "id": "12149243", "url": "https://pubmed.ncbi.nlm.nih.gov/12149243" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11388-1", "protein_name": "DNA topoisomerase 2-alpha", "gene_name": "TOP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15392-1", "protein_name": "Baculoviral IAP repeat-containing protein 5", "gene_name": "BIRC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQS7-1", "protein_name": "Inner centromere protein", "gene_name": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 103, "end_pos": 103, "sequence_org": "K", "sequence_mut": "R", "comment": "Localizes in both nucleoplasm and nucleoli; when associated with R-117 or R-153. Almost complete loss of sumoylation, concentrates in nucleoli and no clearing from nucleoli on CPT treatment; when associated with R-117 and R-153.", "evidence": [ { "database": "UniProtKB", "id": "P11387", "url": "https://www.uniprot.org/uniprotkb/P11387" }, { "database": "PubMed", "id": "12149243", "url": "https://pubmed.ncbi.nlm.nih.gov/12149243" } ], "uniprot_canonical_ac": "P11387-1" }, { "start_pos": 117, "end_pos": 117, "sequence_org": "K", "sequence_mut": "R", "comment": "5-fold decrease in sumoylation. Localizes in both nucleoplasm and nucleoli; when associated with or without R-103 or R-153. Almost complete loss of sumoylation, concentrates in nucleoli and no clearing from nucleoli on CPT treatment; when associated with R-103 and R-153.", "evidence": [ { "database": "UniProtKB", "id": "P11387", "url": "https://www.uniprot.org/uniprotkb/P11387" }, { "database": "PubMed", "id": "12149243", "url": "https://pubmed.ncbi.nlm.nih.gov/12149243" } ], "uniprot_canonical_ac": "P11387-1" }, { "start_pos": 153, "end_pos": 153, "sequence_org": "K", "sequence_mut": "R", "comment": "Localizes in both nucleoplasm and nucleoli; when associated with R-103 or R-117. Almost complete loss of sumoylation, concentrates in nucleoli and no clearing from nucleoli on CPT treatment; when associated with R-103 and R-117.", "evidence": [ { "database": "UniProtKB", "id": "P11387", "url": "https://www.uniprot.org/uniprotkb/P11387" }, { "database": "PubMed", "id": "12149243", "url": "https://pubmed.ncbi.nlm.nih.gov/12149243" } ], "uniprot_canonical_ac": "P11387-1" }, { "start_pos": 723, "end_pos": 723, "sequence_org": "Y", "sequence_mut": "F", "comment": "No change in CPT-induced clearing from nuclei.", "evidence": [ { "database": "UniProtKB", "id": "P11387", "url": "https://www.uniprot.org/uniprotkb/P11387" }, { "database": "PubMed", "id": "12149243", "url": "https://pubmed.ncbi.nlm.nih.gov/12149243" } ], "uniprot_canonical_ac": "P11387-1" } ], "record_id": "pubmed.12149243", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 43 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99497-1", "protein_name": "Parkinson disease protein 7", "gene_name": "PARK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969V6-1", 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"protein_name": "Inhibitor of growth protein 2", "gene_name": "ING2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13363-1", "protein_name": "C-terminal-binding protein 1", "gene_name": "CTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBK2-1", "protein_name": "Peroxisome proliferator-activated receptor gamma coactivator 1-alpha", "gene_name": "PPARGC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX5-1", "protein_name": "Zinc finger protein 350", "gene_name": "ZNF350", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UIS9-1", "protein_name": "Methyl-CpG-binding domain protein 1", "gene_name": "MBD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL3-1", "protein_name": "CASP8-associated protein 2", "gene_name": "CASP8AP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52739-1", "protein_name": "Zinc finger protein 131", "gene_name": "ZNF131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU4-1", "protein_name": "E3 ubiquitin-protein ligase UHRF2", "gene_name": "UHRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PIAS1 and PIASxalpha function as SUMO-E3 ligases toward androgen receptor and repress androgen receptor-dependent transcription.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Nishida T, Yasuda H", "reference": { "type": "PubMed", "id": "12177000", "url": "https://pubmed.ncbi.nlm.nih.gov/12177000" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04150-1", "protein_name": "Glucocorticoid receptor", "gene_name": "NR3C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10276-1", "protein_name": "Retinoic acid receptor alpha", "gene_name": "RARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37231-1", "protein_name": "Peroxisome proliferator-activated receptor gamma", "gene_name": "PPARG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07869-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "PPARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55055-1", "protein_name": "Oxysterols receptor LXR-beta", "gene_name": "NR1H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35398-2", "protein_name": "Nuclear receptor ROR-alpha", "gene_name": "RORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13285-1", "protein_name": "Steroidogenic factor 1", "gene_name": "NR5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10828-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "THRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11473-1", "protein_name": "Vitamin D3 receptor", "gene_name": "VDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08235-1", "protein_name": "Mineralocorticoid receptor", "gene_name": "NR3C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13056-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "NR2C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43354-1", "protein_name": "Nuclear receptor subfamily 4 group A member 2", "gene_name": "NR4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10275-1", "protein_name": "Androgen receptor", "gene_name": "AR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12177000", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enzymes of the SUMO modification pathway localize to filaments of the nuclear pore complex.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Zhang H, Saitoh H, Matunis MJ", "reference": { "type": "PubMed", "id": "12192048", "url": "https://pubmed.ncbi.nlm.nih.gov/12192048" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC62-1", "protein_name": "Sentrin-specific protease 2", "gene_name": "SENP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U3-1", "protein_name": "Sentrin-specific protease 1", "gene_name": "SENP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HI0-1", "protein_name": "Sentrin-specific protease 5", "gene_name": "SENP5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12192048", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcription factor Sp3 is silenced through SUMO modification by PIAS1.", "journal": "The EMBO journal", "date": "2002", "authors": "Sapetschnig A, Rischitor G, Braun H, Doll A, Schergaut M, Melchior F, Suske G", "reference": { "type": "PubMed", "id": "12356736", "url": "https://pubmed.ncbi.nlm.nih.gov/12356736" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92481-1", "protein_name": "Transcription factor AP-2-beta", "gene_name": "TFAP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13330-1", "protein_name": "Metastasis-associated protein MTA1", "gene_name": "MTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92754-1", "protein_name": "Transcription factor AP-2 gamma", "gene_name": "TFAP2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14526-1", "protein_name": "Hypermethylated in cancer 1 protein", "gene_name": "HIC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75030-1", "protein_name": "Microphthalmia-associated transcription factor", "gene_name": "MITF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42771-1", "protein_name": "Cyclin-dependent kinase inhibitor 2A", "gene_name": "CDKN2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58012-1", "protein_name": "Forkhead box protein L2", "gene_name": "FOXL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12888-1", "protein_name": "TP53-binding protein 1", "gene_name": "TP53BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02447-1", "protein_name": "Transcription factor Sp3", "gene_name": "SP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00987-1", "protein_name": "E3 ubiquitin-protein ligase Mdm2", "gene_name": "MDM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12356736", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular features of human ubiquitin-like SUMO genes and their encoded proteins.", "journal": "Gene", "date": "2002", "authors": "Su Hong-Lin, Li Steven S-L", "reference": { "type": "PubMed", "id": "12383504", "url": "https://pubmed.ncbi.nlm.nih.gov/12383504" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12383504", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUMO-1 modification represses Sp3 transcriptional activation and modulates its subnuclear localization.", "journal": "Molecular cell", "date": "2002", "authors": "Ross S, Best JL, Zon LI, Gill G", "reference": { "type": "PubMed", "id": "12419227", "url": "https://pubmed.ncbi.nlm.nih.gov/12419227" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92481-1", "protein_name": "Transcription factor AP-2-beta", "gene_name": "TFAP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13330-1", "protein_name": "Metastasis-associated protein MTA1", "gene_name": "MTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92754-1", "protein_name": "Transcription factor AP-2 gamma", "gene_name": "TFAP2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14526-1", "protein_name": "Hypermethylated in cancer 1 protein", "gene_name": "HIC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75030-1", "protein_name": "Microphthalmia-associated transcription factor", "gene_name": "MITF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42771-1", "protein_name": "Cyclin-dependent kinase inhibitor 2A", "gene_name": "CDKN2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58012-1", "protein_name": "Forkhead box protein L2", "gene_name": "FOXL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12888-1", "protein_name": "TP53-binding protein 1", "gene_name": "TP53BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02447-1", "protein_name": "Transcription factor Sp3", "gene_name": "SP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00987-1", "protein_name": "E3 ubiquitin-protein ligase Mdm2", "gene_name": "MDM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 120, "end_pos": 120, "sequence_org": "K", "sequence_mut": "R", "comment": "Some loss of sumoylation. Slight increase in transcriptional activity. Large increase in transcriptional activity; when associated with R-551.", "evidence": [ { "database": "UniProtKB", "id": "Q02447", "url": "https://www.uniprot.org/uniprotkb/Q02447" }, { "database": "PubMed", "id": "12419227", "url": "https://pubmed.ncbi.nlm.nih.gov/12419227" } ], "uniprot_canonical_ac": "Q02447-1" }, { "start_pos": 551, "end_pos": 551, "sequence_org": "K", "sequence_mut": "Q", "comment": "A decreased interaction with HDAC1 and deacetylation of SP3. Increase of about 4.5% of activity of the TERT promoter. Decreased recruitment of HDAC1 and increased binding of RNA polymerase II with promoter DNA.", "evidence": [ { "database": "UniProtKB", "id": "Q02447", "url": "https://www.uniprot.org/uniprotkb/Q02447" }, { "database": "PubMed", "id": "16781829", "url": "https://pubmed.ncbi.nlm.nih.gov/16781829" }, { "database": "PubMed", "id": "17548428", "url": "https://pubmed.ncbi.nlm.nih.gov/17548428" }, { "database": "PubMed", "id": "12419227", "url": "https://pubmed.ncbi.nlm.nih.gov/12419227" } ], "uniprot_canonical_ac": "Q02447-1" }, { "start_pos": 551, "end_pos": 551, "sequence_org": "K", "sequence_mut": "R", "comment": "Great loss of sumoylation, 20-fold increase in transcriptional activity and diffuse nuclear localization. Further small increase in transcriptional activity; when associated with R-120. Increased interaction with HDAC1 and deacetylation of SP3. About 50% decrease in activity of the TERT promoter. Enhances recruitment of HDAC1 and inhibits binding of RNA polymerase II with promoter DNA.", "evidence": [ { "database": "UniProtKB", "id": "Q02447", "url": "https://www.uniprot.org/uniprotkb/Q02447" }, { "database": "PubMed", "id": "12419227", "url": "https://pubmed.ncbi.nlm.nih.gov/12419227" }, { "database": "PubMed", "id": "16781829", "url": "https://pubmed.ncbi.nlm.nih.gov/16781829" }, { "database": "PubMed", "id": "17548428", "url": "https://pubmed.ncbi.nlm.nih.gov/17548428" } ], "uniprot_canonical_ac": "Q02447-1" } ], "record_id": "pubmed.12419227", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sumoylation of the progesterone receptor and of the steroid receptor coactivator SRC-1.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Chauchereau A, Amazit L, Quesne M, Guiochon-Mantel A, Milgrom E", "reference": { "type": "PubMed", "id": "12529333", "url": "https://pubmed.ncbi.nlm.nih.gov/12529333" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99497-1", "protein_name": "Parkinson disease protein 7", "gene_name": "PARK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969V6-1", "protein_name": "Myocardin-related transcription factor A", "gene_name": "MRTFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92841-4", "protein_name": "Probable ATP-dependent RNA helicase DDX17", "gene_name": "DDX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13263-1", "protein_name": "Transcription intermediary factor 1-beta", "gene_name": "TRIM28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2X6-1", "protein_name": "Homeodomain-interacting protein kinase 2", "gene_name": "HIPK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST3-1", "protein_name": "Paired amphipathic helix protein Sin3a", "gene_name": "SIN3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H160-1", "protein_name": "Inhibitor of growth protein 2", "gene_name": "ING2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13363-1", "protein_name": "C-terminal-binding protein 1", "gene_name": "CTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBK2-1", "protein_name": "Peroxisome proliferator-activated receptor gamma coactivator 1-alpha", "gene_name": "PPARGC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX5-1", "protein_name": "Zinc finger protein 350", "gene_name": "ZNF350", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UIS9-1", "protein_name": "Methyl-CpG-binding domain protein 1", "gene_name": "MBD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL3-1", "protein_name": "CASP8-associated protein 2", "gene_name": "CASP8AP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52739-1", "protein_name": "Zinc finger protein 131", "gene_name": "ZNF131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU4-1", "protein_name": "E3 ubiquitin-protein ligase UHRF2", "gene_name": "UHRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15424-1", "protein_name": "Scaffold attachment factor B1", "gene_name": "SAFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1378, "end_pos": 1378, "sequence_org": "K", "sequence_mut": "R", "comment": "Does not affect sumoylation of the protein.", "evidence": [ { "database": "UniProtKB", "id": "Q15788", "url": "https://www.uniprot.org/uniprotkb/Q15788" }, { "database": "PubMed", "id": "12529333", "url": 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"evidence": [ { "database": "UniProtKB", "id": "Q15788", "url": "https://www.uniprot.org/uniprotkb/Q15788" }, { "database": "PubMed", "id": "12529333", "url": "https://pubmed.ncbi.nlm.nih.gov/12529333" } ], "uniprot_canonical_ac": "Q15788-1" }, { "start_pos": 846, "end_pos": 846, "sequence_org": "K", "sequence_mut": "R", "comment": "Does not affect sumoylation of the protein.", "evidence": [ { "database": "UniProtKB", "id": "Q15788", "url": "https://www.uniprot.org/uniprotkb/Q15788" }, { "database": "PubMed", "id": "12529333", "url": "https://pubmed.ncbi.nlm.nih.gov/12529333" } ], "uniprot_canonical_ac": "Q15788-1" } ], "record_id": "pubmed.12529333", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of two residues proximal to the active site of Ubc9 in substrate recognition by the Ubc9.SUMO-1 thiolester complex.", "journal": "Biochemistry", "date": "2003", "authors": "Tatham MH, Chen Y, Hay RT", "reference": { "type": "PubMed", "id": "12641448", "url": "https://pubmed.ncbi.nlm.nih.gov/12641448" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBE0-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "SAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBT2-1", "protein_name": "SUMO-activating enzyme subunit 2", "gene_name": "UBA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3V2-1", "protein_name": "RWD domain-containing protein 3", "gene_name": "RWDD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 100, "end_pos": 101, "sequence_org": "DK", "sequence_mut": "AA", "comment": "Impairs catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "P63279", "url": "https://www.uniprot.org/uniprotkb/P63279" }, { "database": "PubMed", "id": "12641448", "url": "https://pubmed.ncbi.nlm.nih.gov/12641448" } ], "uniprot_canonical_ac": "P63279-1" } ], "record_id": "pubmed.12641448", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The polycomb protein Pc2 is a SUMO E3.", "journal": "Cell", "date": "2003", "authors": "Kagey MH, Melhuish TA, Wotton D", "reference": { "type": "PubMed", "id": "12679040", "url": "https://pubmed.ncbi.nlm.nih.gov/12679040" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99497-1", "protein_name": "Parkinson disease protein 7", "gene_name": "PARK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969V6-1", "protein_name": "Myocardin-related transcription factor A", "gene_name": "MRTFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92841-4", "protein_name": "Probable ATP-dependent RNA helicase DDX17", "gene_name": "DDX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13263-1", "protein_name": "Transcription intermediary factor 1-beta", "gene_name": "TRIM28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2X6-1", "protein_name": "Homeodomain-interacting protein kinase 2", "gene_name": "HIPK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST3-1", "protein_name": "Paired amphipathic helix protein Sin3a", "gene_name": "SIN3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H160-1", "protein_name": "Inhibitor of growth protein 2", "gene_name": "ING2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13363-1", "protein_name": "C-terminal-binding protein 1", "gene_name": "CTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBK2-1", "protein_name": "Peroxisome proliferator-activated receptor gamma coactivator 1-alpha", "gene_name": "PPARGC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX5-1", "protein_name": "Zinc finger protein 350", "gene_name": "ZNF350", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UIS9-1", "protein_name": "Methyl-CpG-binding domain protein 1", "gene_name": "MBD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKL3-1", "protein_name": "CASP8-associated protein 2", "gene_name": "CASP8AP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52739-1", "protein_name": "Zinc finger protein 131", "gene_name": "ZNF131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU4-1", "protein_name": "E3 ubiquitin-protein ligase UHRF2", "gene_name": "UHRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15424-1", "protein_name": "Scaffold attachment factor B1", "gene_name": "SAFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12679040", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "P300 transcriptional repression is mediated by SUMO modification.", "journal": "Molecular cell", "date": "2003", "authors": "Girdwood D, Bumpass D, Vaughan OA, Thain A, Anderson LA, Snowden AW, Garcia-Wilson E, Perkins ND, Hay RT", "reference": { "type": "PubMed", "id": "12718889", "url": "https://pubmed.ncbi.nlm.nih.gov/12718889" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99497-1", "protein_name": "Parkinson disease protein 7", "gene_name": "PARK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969V6-1", "protein_name": "Myocardin-related transcription factor A", "gene_name": "MRTFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92841-4", "protein_name": "Probable ATP-dependent RNA helicase DDX17", "gene_name": "DDX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13263-1", "protein_name": "Transcription intermediary factor 1-beta", "gene_name": "TRIM28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2X6-1", "protein_name": "Homeodomain-interacting protein kinase 2", "gene_name": "HIPK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST3-1", "protein_name": "Paired amphipathic helix protein Sin3a", "gene_name": "SIN3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H160-1", "protein_name": "Inhibitor of growth protein 2", "gene_name": "ING2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13363-1", "protein_name": "C-terminal-binding protein 1", "gene_name": "CTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBK2-1", "protein_name": "Peroxisome proliferator-activated receptor gamma coactivator 1-alpha", "gene_name": "PPARGC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZX5-1", "protein_name": "Zinc finger protein 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"uniprot_canonical_ac": "P04150-1", "protein_name": "Glucocorticoid receptor", "gene_name": "NR3C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10276-1", "protein_name": "Retinoic acid receptor alpha", "gene_name": "RARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37231-1", "protein_name": "Peroxisome proliferator-activated receptor gamma", "gene_name": "PPARG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07869-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "PPARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55055-1", "protein_name": "Oxysterols receptor LXR-beta", "gene_name": "NR1H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35398-2", "protein_name": "Nuclear receptor ROR-alpha", "gene_name": "RORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13285-1", "protein_name": "Steroidogenic factor 1", "gene_name": "NR5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10828-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "THRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11473-1", "protein_name": "Vitamin D3 receptor", "gene_name": "VDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08235-1", "protein_name": "Mineralocorticoid receptor", "gene_name": "NR3C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13056-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "NR2C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43354-1", "protein_name": "Nuclear receptor subfamily 4 group A member 2", "gene_name": "NR4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10275-1", "protein_name": "Androgen 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"uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01826-1", "protein_name": "DNA-binding protein SATB1", "gene_name": "SATB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "O96006-1", "protein_name": "E3 SUMO-protein ligase ZBED1", "gene_name": "ZBED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45973-1", "protein_name": "Chromobox protein homolog 5", "gene_name": "CBX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12873-1", "protein_name": "ATP-dependent chromatin 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"uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW6-1", "protein_name": "DNA-binding protein SATB2", "gene_name": "SATB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15022-1", "protein_name": "Polycomb protein SUZ12", "gene_name": "SUZ12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14578449", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 53 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequential modification of NEMO/IKKgamma by SUMO-1 and ubiquitin mediates NF-kappaB activation by genotoxic stress.", "journal": "Cell", "date": "2003", "authors": "Huang TT, Wuerzberger-Davis SM, Wu ZH, Miyamoto S", "reference": { "type": "PubMed", "id": "14651848", "url": "https://pubmed.ncbi.nlm.nih.gov/14651848" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14164-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase subunit epsilon", "gene_name": "IKBKE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25963-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "NFKBIA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00653-1", "protein_name": "Nuclear factor NF-kappa-B p100 subunit", "gene_name": "NFKB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS56-1", "protein_name": "E3 ubiquitin-protein ligase Topors", "gene_name": "TOPORS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19525-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "EIF2AK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K9-1", "protein_name": "NF-kappa-B essential modulator", "gene_name": "IKBKG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04206-1", "protein_name": "Transcription factor p65", "gene_name": "RELA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": 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Abolishes sumoylation and IKK activation; when associated with A-309.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y6K9", "url": "https://www.uniprot.org/uniprotkb/Q9Y6K9" }, { "database": "PubMed", "id": "14651848", "url": "https://pubmed.ncbi.nlm.nih.gov/14651848" } ], "uniprot_canonical_ac": "Q9Y6K9-1" }, { "start_pos": 309, "end_pos": 309, "sequence_org": "K", "sequence_mut": "A", "comment": "Partial abolition of sumoylation. Abolishes sumoylation and IKK activation; when associated with A-277. No effect on MARCH2F-mediated K48-linked ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y6K9", "url": "https://www.uniprot.org/uniprotkb/Q9Y6K9" }, { "database": "PubMed", "id": "32935379", "url": "https://pubmed.ncbi.nlm.nih.gov/32935379" }, { "database": "PubMed", "id": "14651848", "url": "https://pubmed.ncbi.nlm.nih.gov/14651848" } ], "uniprot_canonical_ac": "Q9Y6K9-1" } ], "record_id": "pubmed.14651848", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUMO modification of a novel MAR-binding protein, SATB2, modulates immunoglobulin mu gene expression.", "journal": "Genes & development", "date": "2003", "authors": "Dobreva G, Dambacher J, Grosschedl R", "reference": { "type": "PubMed", "id": "14701874", "url": "https://pubmed.ncbi.nlm.nih.gov/14701874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969R5-1", "protein_name": "Lethal(3)malignant brain tumor-like protein 2", "gene_name": "L3MBTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin NUP188", "gene_name": "NUP188", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": 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"Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45973-1", "protein_name": "Chromobox protein homolog 5", "gene_name": "CBX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12873-1", "protein_name": "ATP-dependent chromatin remodeler CHD3", "gene_name": "CHD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92769-1", "protein_name": "Histone deacetylase 2", "gene_name": "HDAC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPW6-1", "protein_name": "DNA-binding protein SATB2", "gene_name": "SATB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15022-1", "protein_name": "Polycomb protein SUZ12", "gene_name": "SUZ12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56524-1", "protein_name": "Histone deacetylase 4", "gene_name": "HDAC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 233, "end_pos": 233, "sequence_org": "K", "sequence_mut": "R", "comment": "Reduced sumoylation, impaired nuclear 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A proteomic study of SUMO-2 target proteins.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Vertegaal AC, Ogg SC, Jaffray E, Rodriguez MS, Hay RT, Andersen JS, Mann M, Lamond AI", "reference": { "type": "PubMed", "id": "15175327", "url": "https://pubmed.ncbi.nlm.nih.gov/15175327" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": 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"protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY18-1", "protein_name": "Structural maintenance of chromosomes protein 5", "gene_name": "SMC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42771-1", "protein_name": "Cyclin-dependent kinase inhibitor 2A", "gene_name": "CDKN2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14676-1", "protein_name": "Mediator of DNA damage checkpoint protein 1", "gene_name": "MDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54132-1", "protein_name": "RecQ-like DNA helicase BLM", "gene_name": "BLM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14191-1", "protein_name": "Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN", "gene_name": "WRN", "tax_name": 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"protein_name": "Histone deacetylase 7", "gene_name": "HDAC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13426-1", "protein_name": "DNA repair protein XRCC4", "gene_name": "XRCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95714-1", "protein_name": "E3 ubiquitin-protein ligase HERC2", "gene_name": "HERC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MG7-1", "protein_name": "Non-structural maintenance of chromosomes element 3 homolog", "gene_name": "NSMCE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N140-1", "protein_name": "EP300-interacting inhibitor of differentiation 3", "gene_name": "EID3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38398-1", "protein_name": "Breast cancer type 1 susceptibility protein", "gene_name": "BRCA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15175327", "abstract": "", "glycosylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Small ubiquitin-like modifier 1 (SUMO-1) modification of the synergy control motif of Ad4 binding protein/steroidogenic factor 1 (Ad4BP/SF-1) regulates synergistic transcription between Ad4BP/SF-1 and Sox9.", "journal": "Molecular endocrinology (Baltimore, Md.)", "date": "2004", "authors": "Komatsu T, Mizusaki H, Mukai T, Ogawa H, Baba D, Shirakawa M, Hatakeyama S, Nakayama KI, Yamamoto H, Kikuchi A, Morohashi K", "reference": { "type": "PubMed", "id": "15192080", "url": "https://pubmed.ncbi.nlm.nih.gov/15192080" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04150-1", "protein_name": "Glucocorticoid receptor", "gene_name": "NR3C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10276-1", "protein_name": "Retinoic acid receptor alpha", "gene_name": "RARA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37231-1", "protein_name": "Peroxisome proliferator-activated receptor gamma", "gene_name": "PPARG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07869-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "PPARA", "tax_name": "Human" }, { 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"referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A.", "journal": "Nature genetics", "date": "2004", "authors": "Giglia-Mari G, Coin F, Ranish JA, Hoogstraten D, Theil A, Wijgers N, Jaspers NG, Raams A, Argentini M, van der Spek PJ, Botta E, Stefanini M, Egly JM, Aebersold R, Hoeijmakers JH, Vermeulen W", "reference": { "type": 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"Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complexity of translationally controlled transcription factor Sp3 isoform expression.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Sapetschnig A, Koch F, Rischitor G, Mennenga T, Suske G", "reference": { "type": "PubMed", "id": "15247228", "url": "https://pubmed.ncbi.nlm.nih.gov/15247228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92481-1", "protein_name": "Transcription factor AP-2-beta", "gene_name": "TFAP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13330-1", "protein_name": "Metastasis-associated protein MTA1", "gene_name": "MTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92754-1", "protein_name": "Transcription 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"database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15247228", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex.", "journal": "Structure", "date": "2004", "authors": "Reverter D, Lima CD", "reference": { "type": "PubMed", "id": "15296745", "url": "https://pubmed.ncbi.nlm.nih.gov/15296745" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC62-1", "protein_name": "Sentrin-specific protease 2", "gene_name": "SENP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15296745", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p14 Arf promotes small ubiquitin-like modifier conjugation of Werners helicase.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Woods YL, Xirodimas DP, Prescott AR, Sparks A, Lane DP, Saville MK", "reference": { "type": "PubMed", "id": "15355988", "url": "https://pubmed.ncbi.nlm.nih.gov/15355988" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC52-1", "protein_name": "Chromobox protein homolog 8", "gene_name": "CBX8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13569-1", "protein_name": "G/T mismatch-specific thymine DNA glycosylase", "gene_name": "TDG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SB8-1", "protein_name": "Structural maintenance of chromosomes protein 6", "gene_name": "SMC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 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"uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDX5-1", "protein_name": "Polyhomeotic-like protein 3", "gene_name": "PHC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTX1-1", "protein_name": "Nucleoporin NDC1", "gene_name": "NDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY18-1", "protein_name": "Structural maintenance of chromosomes protein 5", "gene_name": "SMC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42771-1", "protein_name": "Cyclin-dependent kinase inhibitor 2A", "gene_name": "CDKN2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14676-1", "protein_name": "Mediator of DNA damage checkpoint protein 1", "gene_name": "MDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54132-1", "protein_name": "RecQ-like DNA helicase BLM", "gene_name": "BLM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14191-1", "protein_name": "Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN", "gene_name": "WRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14781-1", "protein_name": "Chromobox protein homolog 2", "gene_name": "CBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF7-1", "protein_name": "E3 SUMO-protein ligase NSE2", "gene_name": "NSMCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WV22-1", "protein_name": "Non-structural maintenance of chromosomes element 1 homolog", "gene_name": "NSMCE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUI4-1", "protein_name": "Histone deacetylase 7", "gene_name": "HDAC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13426-1", "protein_name": "DNA repair protein XRCC4", "gene_name": "XRCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23497-1", "protein_name": "Nuclear autoantigen Sp-100", "gene_name": "SP100", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "RNF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06587-1", "protein_name": "E3 ubiquitin-protein ligase RING1", "gene_name": "RING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYW5-1", "protein_name": "E3 ubiquitin-protein ligase RNF168", "gene_name": "RNF168", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43351-1", "protein_name": "DNA repair protein RAD52 homolog", "gene_name": "RAD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2W9-1", "protein_name": "E3 SUMO-protein ligase PIAS4", "gene_name": "PIAS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35227-1", "protein_name": "Polycomb group RING finger protein 2", "gene_name": "PCGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95714-1", "protein_name": "E3 ubiquitin-protein ligase HERC2", "gene_name": "HERC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MG7-1", "protein_name": "Non-structural maintenance of chromosomes element 3 homolog", "gene_name": "NSMCE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N140-1", "protein_name": "EP300-interacting inhibitor of differentiation 3", "gene_name": "EID3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38398-1", "protein_name": "Breast cancer type 1 susceptibility protein", "gene_name": "BRCA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00257-1", "protein_name": "E3 SUMO-protein ligase CBX4", "gene_name": "CBX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55854", "url": "https://www.uniprot.org/uniprotkb/P55854" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15355988", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 72 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping residues of SUMO precursors essential in differential maturation by SUMO-specific protease, SENP1.", "journal": "The Biochemical journal", "date": "2005", "authors": "Xu Z, Au SW", "reference": { "type": "PubMed", "id": "15487983", "url": "https://pubmed.ncbi.nlm.nih.gov/15487983" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC62-1", "protein_name": "Sentrin-specific protease 2", "gene_name": "SENP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0U3-1", "protein_name": "Sentrin-specific protease 1", "gene_name": "SENP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sumoylation of internally initiated Sp3 isoforms regulates transcriptional repression via a Trichostatin A-insensitive mechanism.", "journal": "Cellular signalling", "date": "2005", "authors": "Spengler ML, Kennett SB, Moorefield KS, Simmons SO, Brattain MG, Horowitz JM", "reference": { "type": "PubMed", "id": "15494207", "url": "https://pubmed.ncbi.nlm.nih.gov/15494207" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple activities contribute to Pc2 E3 function.", "journal": "The EMBO journal", "date": "2005", "authors": "Kagey MH, Melhuish TA, Powers SE, Wotton D", "reference": { "type": "PubMed", "id": "15592428", "url": "https://pubmed.ncbi.nlm.nih.gov/15592428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969R5-1", "protein_name": "Lethal(3)malignant brain 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"uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45973-1", "protein_name": "Chromobox protein homolog 5", "gene_name": "CBX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12873-1", "protein_name": "ATP-dependent chromatin remodeler CHD3", "gene_name": "CHD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92769-1", "protein_name": "Histone deacetylase 2", "gene_name": "HDAC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35226-1", "protein_name": "Polycomb complex protein BMI-1", "gene_name": "BMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78364-1", "protein_name": "Polyhomeotic-like protein 1", "gene_name": "PHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99496-1", "protein_name": "E3 ubiquitin-protein 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