[ { "title": "Multiprotein complexes that link dislocation, ubiquitination, and extraction of misfolded proteins from the endoplasmic reticulum membrane.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2005", "authors": "Lilley BN, Ploegh HL", "reference": { "type": "PubMed", "id": "16186509", "url": "https://pubmed.ncbi.nlm.nih.gov/16186509" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBV2-1", "protein_name": "Protein sel-1 homolog 1", "gene_name": "SEL1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZP9-1", "protein_name": "Derlin-2", "gene_name": "DERL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BNI4-1", "protein_name": "Derlin-2", "gene_name": "Derl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99J56-1", "protein_name": "Derlin-1", "gene_name": "Derl1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16186509", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Recruitment of the p97 ATPase and ubiquitin ligases to the site of retrotranslocation at the endoplasmic reticulum membrane.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2005", "authors": "Ye Y, Shibata Y, Kikkert M, van Voorden S, Wiertz E, Rapoport TA", "reference": { "type": "PubMed", "id": "16186510", "url": "https://pubmed.ncbi.nlm.nih.gov/16186510" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV5-1", "protein_name": "E3 ubiquitin-protein ligase AMFR", "gene_name": "AMFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16186510", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.", "journal": "Molecular cell", "date": "2005", "authors": "Zhu B, Zheng Y, Pham AD, Mandal SS, Erdjument-Bromage H, Tempst P, Reinberg D", "reference": { "type": "PubMed", "id": "16307923", "url": "https://pubmed.ncbi.nlm.nih.gov/16307923" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase 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"gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase 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"protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61086-1", "protein_name": "Ubiquitin-conjugating enzyme E2 K", "gene_name": "UBE2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": 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"gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": 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"Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human HLTF functions as a ubiquitin ligase for proliferating cell nuclear antigen polyubiquitination.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2008", "authors": "Unk I, Hajdu I, Fatyol K, Hurwitz J, Yoon JH, Prakash L, Prakash S, Haracska L", "reference": { "type": "PubMed", "id": "18316726", "url": "https://pubmed.ncbi.nlm.nih.gov/18316726" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { 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"uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18316726", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polyubiquitination of proliferating cell nuclear antigen by HLTF and SHPRH prevents genomic instability from stalled replication forks.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2008", "authors": "Motegi A, Liaw HJ, Lee KY, Roest HP, Maas A, Wu X, Moinova H, Markowitz SD, Ding H, Hoeijmakers JH, Myung K", "reference": { "type": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 164, "end_pos": 164, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes ubiquitination. No effect on interaction with SHPRH.", "evidence": [ { "database": "UniProtKB", "id": "P12004", "url": "https://www.uniprot.org/uniprotkb/P12004" }, { "database": "PubMed", "id": "17108083", "url": "https://pubmed.ncbi.nlm.nih.gov/17108083" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" }, { "database": "PubMed", "id": "17130289", "url": "https://pubmed.ncbi.nlm.nih.gov/17130289" }, { "database": "PubMed", "id": "20129063", "url": "https://pubmed.ncbi.nlm.nih.gov/20129063" } ], "uniprot_canonical_ac": "P12004-1" }, { "start_pos": 48, "end_pos": 48, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on HLTF-mediated polyubiquitination of PCNA.", "evidence": [ { "database": "UniProtKB", "id": "P62979", "url": "https://www.uniprot.org/uniprotkb/P62979" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" } ], "uniprot_canonical_ac": "P62979-1" }, { "start_pos": 63, "end_pos": 63, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes HLTF-mediated polyubiquitination of PCNA.", "evidence": [ { "database": "UniProtKB", "id": "P62979", "url": "https://www.uniprot.org/uniprotkb/P62979" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" } ], "uniprot_canonical_ac": "P62979-1" }, { "start_pos": 48, "end_pos": 48, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on HLTF-mediated polyubiquitination of PCNA.", "evidence": [ { "database": "UniProtKB", "id": "P0CG47", "url": "https://www.uniprot.org/uniprotkb/P0CG47" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" } ], "uniprot_canonical_ac": "P0CG47-1" }, { "start_pos": 63, "end_pos": 63, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes HLTF-mediated polyubiquitination of PCNA.", "evidence": [ { "database": "UniProtKB", "id": "P0CG47", "url": "https://www.uniprot.org/uniprotkb/P0CG47" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" } ], "uniprot_canonical_ac": "P0CG47-1" }, { "start_pos": 48, "end_pos": 48, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on HLTF-mediated polyubiquitination of PCNA.", "evidence": [ { "database": "UniProtKB", "id": "P62987", "url": "https://www.uniprot.org/uniprotkb/P62987" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" } ], "uniprot_canonical_ac": "P62987-1" }, { "start_pos": 63, "end_pos": 63, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes HLTF-mediated polyubiquitination of PCNA.", "evidence": [ { "database": "UniProtKB", "id": "P62987", "url": "https://www.uniprot.org/uniprotkb/P62987" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" } ], "uniprot_canonical_ac": "P62987-1" }, { "start_pos": 48, "end_pos": 48, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on HLTF-mediated polyubiquitination of PCNA. Impairs ubiquitination by CRL2(KLHDC3) E3 ligase complex.", "evidence": [ { "database": "UniProtKB", "id": "P0CG48", "url": "https://www.uniprot.org/uniprotkb/P0CG48" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" }, { "database": "PubMed", "id": "39548056", "url": "https://pubmed.ncbi.nlm.nih.gov/39548056" } ], "uniprot_canonical_ac": "P0CG48-1" }, { "start_pos": 63, "end_pos": 63, "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes HLTF-mediated polyubiquitination of PCNA.", "evidence": [ { "database": "UniProtKB", "id": "P0CG48", "url": "https://www.uniprot.org/uniprotkb/P0CG48" }, { "database": "PubMed", "id": "18719106", "url": "https://pubmed.ncbi.nlm.nih.gov/18719106" } ], "uniprot_canonical_ac": "P0CG48-1" } ], "record_id": "pubmed.18719106", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells.", "journal": "Cell", "date": "2009", "authors": "Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, Milne TA, Shilatifard A, Muir TW, Roeder RG", "reference": { "type": "PubMed", "id": "19410543", "url": "https://pubmed.ncbi.nlm.nih.gov/19410543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19410543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical characterisation of the SWI/SNF family member HLTF.", "journal": "Biochemical and biophysical research communications", "date": "2009", "authors": "MacKay C, Toth R, Rouse J", "reference": { "type": "PubMed", "id": "19723507", "url": "https://pubmed.ncbi.nlm.nih.gov/19723507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZW49-6", "protein_name": "PAX-interacting protein 1", "gene_name": "PAXIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19723507", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 55 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNF152, a novel lysosome localized E3 ligase with pro-apoptotic activities.", "journal": "Protein & cell", "date": "2010", "authors": "Zhang S, Wu W, Wu Y, Zheng J, Suo T, Tang H, Tang J", "reference": { "type": "PubMed", "id": "21203937", "url": "https://pubmed.ncbi.nlm.nih.gov/21203937" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21203937", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "WAC, a functional partner of RNF20/40, regulates histone H2B ubiquitination and gene transcription.", "journal": "Molecular cell", "date": "2011", "authors": "Zhang F, Yu X", "reference": { "type": "PubMed", "id": "21329877", "url": "https://pubmed.ncbi.nlm.nih.gov/21329877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21329877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SHPRH and HLTF act in a damage-specific manner to coordinate different forms of postreplication repair and prevent mutagenesis.", "journal": "Molecular cell", "date": "2011", "authors": "Lin JR, Zeman MK, Chen JY, Yee MC, Cimprich KA", "reference": { "type": "PubMed", "id": "21396873", "url": "https://pubmed.ncbi.nlm.nih.gov/21396873" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21396873", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The general definition of the p97/valosin-containing protein (VCP)-interacting motif (VIM) delineates a new family of p97 cofactors.", "journal": "J. Biol. Chem.", "date": "2011", "authors": "Stapf C, Cartwright E, Bycroft M, Hofmann K, Buchberger A", "reference": { "type": "PubMed", "id": "21896481", "url": "https://pubmed.ncbi.nlm.nih.gov/21896481" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8Y5-1", "protein_name": "tRNA endonuclease ANKZF1", "gene_name": "ANKZF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHG7-1", "protein_name": "Small VCP/p97-interacting protein", "gene_name": "SVIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WV99-1", "protein_name": "AN1-type zinc finger protein 2B", "gene_name": "ZFAND2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZV1-1", "protein_name": "UBX domain-containing protein 6", "gene_name": "UBXN6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 661, "end_pos": 662, "sequence_org": "AA", "sequence_mut": "LL", "comment": "Abolishes interaction with VCP.", "evidence": [ { "database": "UniProtKB", "id": "Q9H8Y5", "url": "https://www.uniprot.org/uniprotkb/Q9H8Y5" }, { "database": "PubMed", "id": "21896481", "url": "https://pubmed.ncbi.nlm.nih.gov/21896481" } ], "uniprot_canonical_ac": "Q9H8Y5-1" } ], "record_id": "pubmed.21896481", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selenoprotein K binds multiprotein complexes and is involved in the regulation of endoplasmic reticulum homeostasis.", "journal": "J. Biol. Chem.", "date": "2011", "authors": "Shchedrina Valentina A, Everley Robert A, Zhang Yan, Gygi Steven P, Hatfield Dolph L, Gladyshev Vadim N", "reference": { "type": "PubMed", "id": "22016385", "url": "https://pubmed.ncbi.nlm.nih.gov/22016385" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q80-1", "protein_name": "Derlin-3", "gene_name": "DERL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JLJ1-1", "protein_name": "Selenoprotein K", "gene_name": "Selenok", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y6D0-1", "protein_name": "Selenoprotein K", "gene_name": "SELENOK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZP9-1", "protein_name": "Derlin-2", "gene_name": "DERL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BNI4-1", "protein_name": "Derlin-2", "gene_name": "Derl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99J56-1", "protein_name": "Derlin-1", "gene_name": "Derl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D8K3-1", "protein_name": "Derlin-3", "gene_name": "Derl3", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22016385", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tumor suppressor CDC73 interacts with the ring finger proteins RNF20 and RNF40 and is required for the maintenance of histone 2B monoubiquitination.", "journal": "Human molecular genetics", "date": "2012", "authors": "Hahn MA, Dickson KA, Jackson S, Clarkson A, Gill AJ, Marsh DJ", "reference": { "type": "PubMed", "id": "22021426", "url": "https://pubmed.ncbi.nlm.nih.gov/22021426" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22021426", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct modes of ubiquitination of peroxisome-targeting signal type 1 (PTS1) receptor Pex5p regulate PTS1 protein import.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Okumoto K, Noda H, Fujiki Y", "reference": { "type": "PubMed", "id": "24662292", "url": "https://pubmed.ncbi.nlm.nih.gov/24662292" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50542-1", "protein_name": "Peroxisomal targeting signal 1 receptor", "gene_name": "PEX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 273, "end_pos": 273, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolished E3 ubiquitin-protein ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "O60683", "url": "https://www.uniprot.org/uniprotkb/O60683" }, { "database": "PubMed", "id": "24662292", "url": "https://pubmed.ncbi.nlm.nih.gov/24662292" } ], "uniprot_canonical_ac": "O60683-1" }, { "start_pos": 310, "end_pos": 310, "sequence_org": "C", "sequence_mut": "G", "comment": "Abolished E3 ubiquitin-protein ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "O60683", "url": 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Abolishes interaction with PEX19; when associated with Q-307.", "evidence": [ { "database": "UniProtKB", "id": "O00623", "url": "https://www.uniprot.org/uniprotkb/O00623" }, { "database": "PubMed", "id": "11390669", "url": "https://pubmed.ncbi.nlm.nih.gov/11390669" }, { "database": "PubMed", "id": "24662292", "url": "https://pubmed.ncbi.nlm.nih.gov/24662292" } ], "uniprot_canonical_ac": "O00623-1" }, { "start_pos": 527, "end_pos": 527, "sequence_org": "K", "sequence_mut": "R", "comment": "Does not affect PEX5 recycling.", "evidence": [ { "database": "UniProtKB", "id": "P50542", "url": "https://www.uniprot.org/uniprotkb/P50542" }, { "database": "PubMed", "id": "24662292", "url": "https://pubmed.ncbi.nlm.nih.gov/24662292" } ], "uniprot_canonical_ac": "P50542-1" } ], "record_id": "pubmed.24662292", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 55 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A high-coverage shRNA screen identifies TMEM129 as an E3 ligase involved in ER-associated protein degradation.", "journal": "Nature communications", "date": "2014", "authors": "van de Weijer ML, Bassik MC, Luteijn RD, Voorburg CM, Lohuis MA, Kremmer E, Hoeben RC, LeProust EM, Chen S, Hoelen H, Ressing ME, Patena W, Weissman JS, McManus MT, Wiertz EJ, Lebbink RJ", "reference": { "type": "PubMed", "id": "24807418", "url": 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"gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24807418", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNF144A, an E3 ubiquitin ligase for DNA-PKcs, promotes apoptosis during DNA damage.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014", "authors": "Ho SR, Mahanic CS, Lee YJ, Lin WC", "reference": { "type": "PubMed", "id": "24979766", "url": "https://pubmed.ncbi.nlm.nih.gov/24979766" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": 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}, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arsenite binds to the RING finger domains of RNF20-RNF40 histone E3 ubiquitin ligase and inhibits DNA double-strand break repair.", "journal": "Journal of the American Chemical Society", "date": "2014", "authors": "Zhang F, Paramasivam M, Cai Q, Dai X, Wang P, Lin K, Song J, Seidman MM, Wang Y", "reference": { "type": "PubMed", "id": "25170678", "url": "https://pubmed.ncbi.nlm.nih.gov/25170678" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase 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[] } ] }, { "title": "The ubiquitination of rag A GTPase by RNF152 negatively regulates mTORC1 activation.", "journal": "Molecular cell", "date": "2015", "authors": "Deng L, Jiang C, Chen L, Jin J, Wei J, Zhao L, Chen M, Pan W, Xu Y, Chu H, Wang X, Ge X, Li D, Liao L, Liu M, Li L, Wang P", "reference": { "type": "PubMed", "id": "25936802", "url": "https://pubmed.ncbi.nlm.nih.gov/25936802" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": 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CRL2 aids elimination of truncated selenoproteins produced by failed UGA/Sec decoding.", "journal": "Science (New York, N.Y.)", "date": "2015", "authors": "Lin HC, Ho SC, Chen YY, Khoo KH, Hsu PH, Yen HC", "reference": { "type": "PubMed", "id": "26138980", "url": "https://pubmed.ncbi.nlm.nih.gov/26138980" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59797-1", "protein_name": "Selenoprotein V", "gene_name": "SELENOV", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15369-1", "protein_name": "Elongin-C", "gene_name": "ELOC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZV6-1", "protein_name": "Methionine-R-sulfoxide reductase B1", "gene_name": "MSRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VXH4-1", "protein_name": "PRAME family member 6", "gene_name": "PRAMEF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6D0-1", "protein_name": "Selenoprotein K", "gene_name": "SELENOK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15370-1", "protein_name": "Elongin-B", "gene_name": "ELOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2U9-1", "protein_name": "Kelch domain-containing protein 2", "gene_name": "KLHDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78395-1", "protein_name": "Melanoma antigen preferentially expressed in tumors", "gene_name": "PRAME", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92624-1", "protein_name": "Amyloid protein-binding protein 2", "gene_name": "APPBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DUQ2-1", "protein_name": "PRAME family member 9", "gene_name": "PRAMEF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13617-1", "protein_name": "Cullin-2", "gene_name": 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"table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identifying the ERAD ubiquitin E3 ligases for viral and cellular targeting of MHC class I.", "journal": "Molecular immunology", "date": "2015", "authors": "van den Boomen DJ, Lehner PJ", "reference": { "type": "PubMed", "id": "26210183", "url": "https://pubmed.ncbi.nlm.nih.gov/26210183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26210183", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of RNF144A E3 Ubiquitin Ligase Activity by Self-association through Its Transmembrane Domain.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ho SR, Lee YJ, Lin WC", "reference": { "type": "PubMed", "id": "26216882", "url": "https://pubmed.ncbi.nlm.nih.gov/26216882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 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"Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 20, "end_pos": 20, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of ubiquitin ligase activity and auto-ubiquitination; when associated with A-23.", "evidence": [ { "database": "UniProtKB", "id": "P50876", "url": "https://www.uniprot.org/uniprotkb/P50876" }, { "database": "PubMed", "id": "26216882", "url": "https://pubmed.ncbi.nlm.nih.gov/26216882" }, { "database": "PubMed", "id": "37955227", "url": "https://pubmed.ncbi.nlm.nih.gov/37955227" }, { "database": "PubMed", "id": "30171075", "url": "https://pubmed.ncbi.nlm.nih.gov/30171075" } ], "uniprot_canonical_ac": "P50876-1" }, { "start_pos": 23, "end_pos": 23, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of ubiquitin ligase activity and auto-ubiquitination; when associated with A-20.", "evidence": [ { "database": "UniProtKB", "id": "P50876", "url": "https://www.uniprot.org/uniprotkb/P50876" }, { "database": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human HLTF mediates postreplication repair by its HIRAN domain-dependent replication fork remodelling.", "journal": "Nucleic acids research", "date": "2015", "authors": "Achar YJ, Balogh D, Neculai D, Juhasz S, Morocz M, Gali H, Dhe-Paganon S, Venclovas C, Haracska L", "reference": { "type": "PubMed", "id": "26350214", "url": "https://pubmed.ncbi.nlm.nih.gov/26350214" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26350214", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Lymphoma Cell Survival by the E3 Ubiquitin Ligase RNF181.", "journal": "Molecular and cellular biology", "date": "2015", "authors": "Pedersen SM, Chan W, Jattani RP, Mackie dS, Pomerantz JL", "reference": { "type": "PubMed", "id": "26711259", "url": "https://pubmed.ncbi.nlm.nih.gov/26711259" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26711259", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and Function of the RING Domains of RNF20 and RNF40, Dimeric E3 Ligases that Monoubiquitylate Histone H2B.", "journal": "Journal of molecular biology", "date": "2016", "authors": "Foglizzo M, Middleton AJ, Day CL", "reference": { "type": "PubMed", "id": "27569044", "url": "https://pubmed.ncbi.nlm.nih.gov/27569044" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27569044", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The RING finger domain E3 ubiquitin ligases BRCA1 and the RNF20/RNF40 complex in global loss of the chromatin mark histone H2B monoubiquitination (H2Bub1) in cell line models and primary high-grade serous ovarian cancer.", "journal": "Human molecular genetics", "date": "2016", "authors": "Dickson KA, Cole AJ, Gill AJ, Clarkson A, Gard GB, Chou A, Kennedy CJ, Henderson BR, Fereday S, Traficante N, Alsop K, Bowtell DD, deFazio A, Clifton-Bligh R, Marsh DJ", "reference": { "type": "PubMed", "id": "27798111", "url": "https://pubmed.ncbi.nlm.nih.gov/27798111" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95999-1", "protein_name": "B-cell lymphoma/leukemia 10", "gene_name": "BCL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14527-1", "protein_name": "DNA-dependent ATPase/E3 ubiquitin-protein ligase HLTF", "gene_name": "HLTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS91-1", "protein_name": "E3 ubiquitin-protein ligase RAD18", "gene_name": "RAD18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75381-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28328-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8N0-1", "protein_name": "E3 ubiquitin-protein ligase RNF152", "gene_name": "RNF152", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTA9-1", "protein_name": "WW domain-containing adapter protein with coiled-coil", "gene_name": "WAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTR2-1", "protein_name": "E3 ubiquitin-protein ligase BRE1A", "gene_name": "RNF20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75150-1", "protein_name": "E3 ubiquitin-protein ligase BRE1B", "gene_name": "RNF40", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q149N8-1", "protein_name": "E3 ubiquitin-protein ligase SHPRH", "gene_name": "SHPRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92968-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60683-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00623-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50876-1", "protein_name": "E3 ubiquitin-protein ligase RNF144A", "gene_name": "RNF144A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27798111", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Recognition of the Diglycine C-End Degron by CRL2(KLHDC2) Ubiquitin Ligase.", "journal": "Molecular cell", "date": "2018", "authors": "Rusnac DV, Lin HC, Canzani D, Tien KX, Hinds TR, Tsue AF, Bush MF, Yen HS, Zheng N", "reference": { "type": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": 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"id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 189, "end_pos": 189, "sequence_org": "R", "sequence_mut": "A", "comment": "Does not affect ability to recognize truncated SELENOK or cleaved USP1 with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 236, "end_pos": 236, "sequence_org": "R", "sequence_mut": "A", "comment": "Does not affect ability to recognize truncated SELENOK with a diglycine (Gly-Gly) at the C-terminus. Abolished ability to recognize cleaved USP1 with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 236, "end_pos": 236, "sequence_org": "R", "sequence_mut": "E", "comment": "Abolished ability to recognize truncated SELENOK with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 241, "end_pos": 241, "sequence_org": "R", "sequence_mut": "A", "comment": "Abolished ability to recognize truncated SELENOK or cleaved USP1 with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 241, "end_pos": 241, "sequence_org": "R", "sequence_mut": "E", "comment": "Abolished ability to recognize truncated SELENOK or cleaved USP1 with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 241, "end_pos": 241, "sequence_org": "R", "sequence_mut": "K", "comment": "Does not affect ability to recognize truncated SELENOK with a diglycine (Gly-Gly) at the C-terminus. Abolished ability to recognize cleaved USP1 with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 241, "end_pos": 241, "sequence_org": "R", "sequence_mut": "L", "comment": "Abolished ability to recognize truncated SELENOK or cleaved USP1 with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y2U9", "url": "https://www.uniprot.org/uniprotkb/Q9Y2U9" }, { "database": "PubMed", "id": "30526872", "url": "https://pubmed.ncbi.nlm.nih.gov/30526872" } ], "uniprot_canonical_ac": "Q9Y2U9-1" }, { "start_pos": 269, "end_pos": 269, "sequence_org": "S", "sequence_mut": "A", "comment": "Does not affect ability to recognize truncated SELENOK with a diglycine (Gly-Gly) at the C-terminus.", "evidence": [ { 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Decoding.", "journal": "iScience", "date": "2020", "authors": "Okumura F, Fujiki Y, Oki N, Osaki K, Nishikimi A, Fukui Y, Nakatsukasa K, Kamura T", "reference": { "type": "PubMed", "id": "32200094", "url": "https://pubmed.ncbi.nlm.nih.gov/32200094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93034-1", "protein_name": "Cullin-5", "gene_name": "CUL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7A1-1", "protein_name": "Kelch domain-containing protein 1", "gene_name": "KLHDC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32200094", "abstract": "", "glycosylation": 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}, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQE4", "url": "https://www.uniprot.org/uniprotkb/Q9BQE4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8625414", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } 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Clinical practice", "date": "2010", "authors": "Yokoyama K, Urashima M, Ohkido I, Kono T, Yoshida T, Muramatsu M, Niu T, Hosoya T", "reference": { "type": "PubMed", "id": "20424473", "url": "https://pubmed.ncbi.nlm.nih.gov/20424473" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99884-1", "protein_name": "Sodium-dependent proline transporter", "gene_name": "SLC6A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y267-1", "protein_name": "Solute carrier family 22 member 14", "gene_name": "SLC22A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX9-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 14", "gene_name": "KCNJ14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y34-1", "protein_name": "Adhesion G protein-coupled receptor G3", "gene_name": "ADGRG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZD1-1", "protein_name": "G protein-coupled receptor family C group 5 member D", "gene_name": "GPRC5D", 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S, Busch AE, Lang F", "reference": { "type": "PubMed", "id": "10358010", "url": "https://pubmed.ncbi.nlm.nih.gov/10358010" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10358010", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a membrane protein, LAT-2, that Co-expresses with 4F2 heavy chain, an L-type amino acid transport activity with broad specificity for small and large zwitterionic amino acids.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Pineda M, Fernandez E, Torrents D, Estevez R, Lopez C, Camps M, Lloberas J, Zorzano A, Palacin M", "reference": { "type": "PubMed", "id": "10391915", "url": "https://pubmed.ncbi.nlm.nih.gov/10391915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48775-1", "protein_name": "Tryptophan 2,3-dioxygenase", "gene_name": "TDO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YP21-1", "protein_name": "Kynurenine--oxoglutarate transaminase 3", "gene_name": "KYAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q63HM1-1", "protein_name": "Kynurenine formamidase", "gene_name": "AFMID", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46952-1", "protein_name": "3-hydroxyanthranilate 3,4-dioxygenase", "gene_name": "HAAO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16719-1", "protein_name": "Kynureninase", "gene_name": "KYNU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15229-1", "protein_name": "Kynurenine 3-monooxygenase", "gene_name": "KMO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZQW0-1", "protein_name": "Indoleamine 2,3-dioxygenase 2", "gene_name": "IDO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16773-1", "protein_name": "Kynurenine--oxoglutarate transaminase 1", "gene_name": "KYAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14902-1", "protein_name": "Indoleamine 2,3-dioxygenase 1", "gene_name": "IDO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5Z0-1", "protein_name": "Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial", "gene_name": "AADAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TDX5-1", "protein_name": "2-amino-3-carboxymuconate-6-semialdehyde decarboxylase", "gene_name": "ACMSD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10391915", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of three cationic amino acid transporters in placental trophoblast: cloning, expression, and characterization of hCAT-1.", "journal": "The Journal of membrane biology", "date": "1999", "authors": "Kamath SG, Furesz TC, Way BA, Smith CH", "reference": { "type": "PubMed", "id": "10485994", "url": "https://pubmed.ncbi.nlm.nih.gov/10485994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10485994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neutral amino acid transporter ASCT2 displays substrate-induced Na+ exchange and a substrate-gated anion conductance.", "journal": "The Biochemical journal", "date": "2000", "authors": "Broer A, Wagner C, Lang F, Broer S", "reference": { "type": "PubMed", "id": "10698697", "url": "https://pubmed.ncbi.nlm.nih.gov/10698697" }, "referenced_glycans": [], 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"Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "D3ZJ25-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "Slc1a5", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10698697", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Primary structure, genomic organization, and functional and electrogenic characteristics of human system N 1, a Na+- and H+-coupled glutamine transporter.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Fei YJ, Sugawara M, Nakanishi T, Huang W, Wang H, Prasad PD, Leibach FH, Ganapathy V", "reference": { "type": "PubMed", "id": "10823827", "url": "https://pubmed.ncbi.nlm.nih.gov/10823827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JHZ9-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "Slc38a3", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10823827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of a human brain Na(+)-independent transporter for small neutral amino acids that transports D-serine with high affinity.", "journal": "Neuroscience letters", "date": "2000", "authors": "Nakauchi J, Matsuo H, Kim DK, Goto A, Chairoungdua A, Cha SH, Inatomi J, Shiokawa Y, Yamaguchi K, Saito I, Endou H, Kanai Y", "reference": { "type": "PubMed", "id": "10863037", "url": "https://pubmed.ncbi.nlm.nih.gov/10863037" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10863037", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and functional expression of ATA1, a subtype of amino acid transporter A, from human placenta.", "journal": "Biochemical and biophysical research communications", "date": "2000", "authors": "Wang H, Huang W, Sugawara M, Devoe LD, Leibach FH, Prasad PD, Ganapathy V", "reference": { "type": "PubMed", "id": "10891391", "url": "https://pubmed.ncbi.nlm.nih.gov/10891391" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10891391", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The heterodimeric amino acid transporter 4F2hc/y+LAT2 mediates arginine efflux in exchange with glutamine.", "journal": "The Biochemical journal", "date": "2000", "authors": "Broer A, Wagner CA, Lang F, Broer S", "reference": { "type": "PubMed", "id": "10903140", "url": "https://pubmed.ncbi.nlm.nih.gov/10903140" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BGK6-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "Slc7a6", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10903140", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Primary structure, functional characteristics and tissue expression pattern of human ATA2, a subtype of amino acid transport system A.", "journal": "Biochimica et biophysica acta", "date": "2000", "authors": "Hatanaka T, Huang W, Wang H, Sugawara M, Prasad PD, Leibach FH, Ganapathy V", "reference": { "type": "PubMed", "id": "10930503", "url": "https://pubmed.ncbi.nlm.nih.gov/10930503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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"SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino 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"Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10930503", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11243884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression cloning of a Na+-independent aromatic amino acid transporter with structural similarity to H+/monocarboxylate transporters.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Kim DK, Kanai Y, Chairoungdua A, Matsuo H, Cha SH, Endou H", "reference": { "type": "PubMed", "id": "11278508", "url": "https://pubmed.ncbi.nlm.nih.gov/11278508" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91Y77-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "Slc16a10", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11278508", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human cystinuria-related transporter: localization and functional characterization.", "journal": "Kidney international", "date": "2001", "authors": "Mizoguchi K, Cha SH, Chairoungdua A, Kim DK, Shigeta Y, Matsuo H, Fukushima J, Awa Y, Akakura K, Goya T, Ito H, Endou H, Kanai Y", "reference": { "type": "PubMed", "id": "11318953", "url": "https://pubmed.ncbi.nlm.nih.gov/11318953" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11318953", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence for the transport of neutral as well as cationic amino acids by ATA3, a novel and liver-specific subtype of amino acid transport system A.", "journal": "Biochimica et biophysica acta", "date": "2001", "authors": "Hatanaka T, Huang W, Ling R, Prasad PD, Sugawara M, Leibach FH, Ganapathy V", "reference": { "type": "PubMed", "id": "11342143", "url": "https://pubmed.ncbi.nlm.nih.gov/11342143" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11342143", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel human amino acid transporter, hNAT3: cDNA cloning, chromosomal mapping, genomic structure, expression, and functional characterization.", "journal": "Genomics", "date": "2001", "authors": "Gu S, Adan-Rice D, Leach RJ, Jiang JX", "reference": { "type": "PubMed", "id": "11414754", "url": "https://pubmed.ncbi.nlm.nih.gov/11414754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11414754", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterisation of human xCT that co-expresses, with 4F2 heavy chain, the amino acid transport activity system xc-.", "journal": "Pflugers Archiv : European journal of physiology", "date": "2001", "authors": "Bassi MT, Gasol E, Manzoni M, Pineda M, Riboni M, Martin R, Zorzano A, Borsani G, Palacin M", "reference": { "type": "PubMed", "id": "11417227", "url": "https://pubmed.ncbi.nlm.nih.gov/11417227" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11417227", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human cationic amino acid transporter hCAT-3 is preferentially expressed in peripheral tissues.", "journal": "Biochemistry", "date": "2001", "authors": "Vekony N, Wolf S, Boissel JP, Gnauert K, Closs EI", "reference": { "type": "PubMed", "id": "11591158", "url": "https://pubmed.ncbi.nlm.nih.gov/11591158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11591158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human T-type amino acid transporter-1: characterization, gene organization, and chromosomal location.", "journal": "Genomics", "date": "2002", "authors": "Kim DK, Kanai Y, Matsuo H, Kim JY, Chairoungdua A, Kobayashi Y, Enomoto A, Cha SH, Goya T, Endou H", "reference": { "type": "PubMed", "id": "11827462", "url": "https://pubmed.ncbi.nlm.nih.gov/11827462" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11827462", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lysine uptake by cloned hCAT-2B: comparison with hCAT-1 and with trophoblast surface membranes.", "journal": "The Journal of membrane biology", "date": "2002", "authors": "Furesz TC, Heath-Monnig E, Kamath SG, Smith CH", "reference": { "type": "PubMed", "id": "12202949", "url": "https://pubmed.ncbi.nlm.nih.gov/12202949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12202949", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure, function and immunolocalization of a proton-coupled amino acid transporter (hPAT1) in the human intestinal cell line Caco-2.", "journal": "The Journal of physiology", "date": "2003", "authors": "Chen Z, Fei YJ, Anderson CM, Wake KA, Miyauchi S, Huang W, Thwaites DT, Ganapathy V", "reference": { "type": "PubMed", "id": "12527723", "url": "https://pubmed.ncbi.nlm.nih.gov/12527723" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12527723", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A cluster of proton/amino acid transporter genes in the human and mouse genomes.", "journal": "Genomics", "date": "2003", "authors": "Boll M, Foltz M, Rubio-Aliaga I, Daniel H", "reference": { "type": "PubMed", "id": "12809675", "url": "https://pubmed.ncbi.nlm.nih.gov/12809675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q811P0-1", "protein_name": "Proton-coupled amino acid transporter 3", "gene_name": "Slc36a3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495N2-1", "protein_name": "Proton-coupled amino acid transporter 3", "gene_name": "SLC36A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BHK3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "Slc36a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12809675", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sodium-coupled neutral amino acid (System N/A) transporters of the SLC38 gene family.", "journal": "Pflugers Arch.", "date": "2004", "authors": "Mackenzie B, Erickson JD", "reference": { "type": "PubMed", "id": "12845534", "url": "https://pubmed.ncbi.nlm.nih.gov/12845534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZM9-1", "protein_name": "Solute carrier family 38 member 6", "gene_name": "SLC38A6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12845534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a novel system L amino acid transporter structurally distinct from heterodimeric amino acid transporters.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Babu E, Kanai Y, Chairoungdua A, Kim DK, Iribe Y, Tangtrongsup S, Jutabha P, Li Y, Ahmed N, Sakamoto S, Anzai N, Nagamori S, Endou H", "reference": { "type": "PubMed", "id": "12930836", "url": "https://pubmed.ncbi.nlm.nih.gov/12930836" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12930836", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Membrane topology of system xc- light subunit reveals a re-entrant loop with substrate-restricted accessibility.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Gasol E, Jimenez-Vidal M, Chillaron J, Zorzano A, Palacin M", "reference": { "type": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 158, "end_pos": 158, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not affect L-cystine transport activity; when associated with S-86; S-197; S-271; S-327; S-414 and S-435. Does not affect affinity for L-cystine; when associated with S-86; S-197; S-271; S-327; S-414 and S-435. Does not affect affinity for L-cystine; when associated with S-86; S-197; S-271; S-327; S-414 and S-435. Significantly increases L-glutamate affinity; when associated with S-86; S-197; S-271; S-327; S-414 and S-435. Does not affect inhibition of L-glutamate transport activity by p-chloromercuribenzoic acid and p-chloromercuribenzenesulfonic acid.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPY5", "url": "https://www.uniprot.org/uniprotkb/Q9UPY5" }, { "database": "PubMed", "id": "14722095", "url": "https://pubmed.ncbi.nlm.nih.gov/14722095" }, { "database": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" } ], "uniprot_canonical_ac": "Q9UPY5-1" }, { "start_pos": 197, "end_pos": 197, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not affect L-cystine transport activity; when associated with S-86; S-158; S-271; S-327; S-414 and S-435. Does not affect affinity for L-cystine; when associated with S-86; S-158; S-271; S-327; S-414 and S-435. Significantly increases L-glutamate affinity; when associated with S-86; S-158; S-271; S-327; S-414 and S-435.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPY5", "url": "https://www.uniprot.org/uniprotkb/Q9UPY5" }, { "database": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" } ], "uniprot_canonical_ac": "Q9UPY5-1" }, { "start_pos": 271, "end_pos": 271, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not affect L-cystine transport activity; when associated with S-86; S-158; S-197; S-327; S-414 and S-435. Does not affect affinity for L-cystine; when associated with S-86; S-158; S-197; S-327; S-414 and S-435. Significantly increases L-glutamate affinity; when associated with S-86; S-158; S-197; S-327; S-414 and S-435. Does not affect inhibition of L-glutamate transport activity by p-chloromercuribenzoic acid and p-chloromercuribenzenesulfonic acid.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPY5", "url": "https://www.uniprot.org/uniprotkb/Q9UPY5" }, { "database": "PubMed", "id": "14722095", "url": "https://pubmed.ncbi.nlm.nih.gov/14722095" }, { "database": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" } ], "uniprot_canonical_ac": "Q9UPY5-1" }, { "start_pos": 327, "end_pos": 327, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not affect L-cystine transport activity; when associated with S-86; S-158; S-197; S-271; S-414 and S-435. Does not affect affinity for L-cystine; when associated with S-86; S-158; S-197; S-271; S-414 and S-435. Significantly increases L-glutamate affinity; when associated with S-86; S-158; S-197; S-271; S-414 and S-435. Loss of inhibitio nof L-glutamate transport activity by p-chloromercuribenzoic acid and p-chloromercuribenzenesulfonic acid. Decrease L-glutamate transport activity. Does not affect location at cell membrane. Does not affect expression level.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPY5", "url": "https://www.uniprot.org/uniprotkb/Q9UPY5" }, { "database": "PubMed", "id": "14722095", "url": "https://pubmed.ncbi.nlm.nih.gov/14722095" }, { "database": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" } ], "uniprot_canonical_ac": "Q9UPY5-1" }, { "start_pos": 414, "end_pos": 414, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not affect L-cystine transport activity; when associated with S-86; S-158; S-197; S-271; S-327 and S-435. Does not affect affinity for L-cystine; when associated with S-86; S-158; S-197; S-271; S-327 and S-435. Significantly increases L-glutamate affinity; when associated with S-86; S-158; S-197; S-271; S-327 and S-435. Does not affect inhibition of L-glutamate transport activity by p-chloromercuribenzoic acid and p-chloromercuribenzenesulfonic acid.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPY5", "url": "https://www.uniprot.org/uniprotkb/Q9UPY5" }, { "database": "PubMed", "id": "14722095", "url": "https://pubmed.ncbi.nlm.nih.gov/14722095" }, { "database": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" } ], "uniprot_canonical_ac": "Q9UPY5-1" }, { "start_pos": 435, "end_pos": 435, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not affect L-cystine transport activity; when associated with S-86; S-158; S-197; S-271; S-327 and S-414. Does not affect affinity for L-cystine; when associated with S-86; S-158; S-197; S-271; S-327 and S-414. Significantly increases L-glutamate affinity; when associated with S-86; S-158; S-197; S-271; S-327 and S-414. Does not affect inhibition of L-glutamate transport activity by p-chloromercuribenzoic acid and p-chloromercuribenzenesulfonic acid.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPY5", "url": "https://www.uniprot.org/uniprotkb/Q9UPY5" }, { "database": "PubMed", "id": "14722095", "url": "https://pubmed.ncbi.nlm.nih.gov/14722095" }, { "database": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" } ], "uniprot_canonical_ac": "Q9UPY5-1" }, { "start_pos": 86, "end_pos": 86, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not affect L-cystine transport activity; when associated with S-158; S-197; S-271; S-327; S-414 and S-435. Does not affect affinity for L-cystine; when associated with S-158; S-197; S-271; S-327; S-414 and S-435. Significantly increases L-glutamate affinity; when associated with S-158; S-197; S-271; S-327; S-414 and S-435. Does not affect inhibition of L-glutamate transport activity by p-chloromercuribenzoic acid and p-chloromercuribenzenesulfonic acid.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPY5", "url": "https://www.uniprot.org/uniprotkb/Q9UPY5" }, { "database": "PubMed", "id": "14722095", "url": "https://pubmed.ncbi.nlm.nih.gov/14722095" }, { "database": "PubMed", "id": "15151999", "url": "https://pubmed.ncbi.nlm.nih.gov/15151999" } ], "uniprot_canonical_ac": "Q9UPY5-1" } ], "record_id": "pubmed.15151999", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of LAT4, a novel amino acid transporter with system L activity.", "journal": "The Journal of biological chemistry", "date": "2005", "authors": "Bodoy S, Martin L, Zorzano A, Palacin M, Estevez R, Bertran J", "reference": { "type": "PubMed", "id": "15659399", "url": "https://pubmed.ncbi.nlm.nih.gov/15659399" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8CGA3-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "Slc43a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 297, "end_pos": 297, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes sensitivity to N-ethymaleimide. Severely decreases phenylalanine transport activity. Decreases affinity for phenylalanine. Strongly decreases glycosylation. Strongly decreases expression. Reduces membrane localization.", "evidence": [ { "database": "UniProtKB", "id": "Q8N370", "url": "https://www.uniprot.org/uniprotkb/Q8N370" }, { "database": "PubMed", "id": "15659399", "url": "https://pubmed.ncbi.nlm.nih.gov/15659399" }, { "database": "PubMed", "id": "30379325", "url": "https://pubmed.ncbi.nlm.nih.gov/30379325" } ], "uniprot_canonical_ac": "Q8N370-1" } ], "record_id": "pubmed.15659399", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reabsorption of neutral amino acids mediated by amino acid transporter LAT2 and TAT1 in the basolateral membrane of proximal tubule.", "journal": "Archives of pharmacal research", "date": "2005", "authors": "Park SY, Kim JK, Kim IJ, Choi BK, Jung KY, Lee S, Park KJ, Chairoungdua A, Kanai Y, Endou H, Kim DK", "reference": { "type": "PubMed", "id": "15918515", "url": "https://pubmed.ncbi.nlm.nih.gov/15918515" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15918515", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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J. Physiol.", "date": "2006", "authors": "Desforges M, Lacey HA, Glazier JD, Greenwood SL, Mynett KJ, Speake PF, Sibley CP", "reference": { "type": "PubMed", "id": "16148032", "url": "https://pubmed.ncbi.nlm.nih.gov/16148032" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16148032", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Amino acid transport across mammalian intestinal and renal epithelia.", "journal": "Physiological reviews", "date": "2008", "authors": "Broer S", "reference": { "type": "PubMed", "id": "18195088", "url": "https://pubmed.ncbi.nlm.nih.gov/18195088" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18195088", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SNAT4 isoform of the system A amino acid transporter is functional in human placental microvillous plasma membrane.", "journal": "The Journal of physiology", "date": "2009-01-15", "authors": "Desforges M, Mynett K J, Jones R L, Greenwood S L, Westwood M, Sibley C P, Glazier J D", "reference": { "type": "PubMed", "id": "19015196", "url": "https://pubmed.ncbi.nlm.nih.gov/19015196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19015196", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SLC36A4 (hPAT4) is a high affinity amino acid transporter when expressed in Xenopus laevis oocytes.", "journal": "The Journal of biological chemistry", "date": "2011", "authors": "Pillai SM, Meredith D", "reference": { "type": "PubMed", "id": "21097500", "url": "https://pubmed.ncbi.nlm.nih.gov/21097500" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48775-1", "protein_name": "Tryptophan 2,3-dioxygenase", "gene_name": "TDO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YP21-1", "protein_name": "Kynurenine--oxoglutarate transaminase 3", "gene_name": "KYAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q63HM1-1", "protein_name": "Kynurenine formamidase", "gene_name": "AFMID", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46952-1", "protein_name": "3-hydroxyanthranilate 3,4-dioxygenase", "gene_name": "HAAO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16719-1", "protein_name": "Kynureninase", "gene_name": "KYNU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15229-1", "protein_name": "Kynurenine 3-monooxygenase", "gene_name": "KMO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZQW0-1", "protein_name": "Indoleamine 2,3-dioxygenase 2", "gene_name": "IDO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16773-1", "protein_name": "Kynurenine--oxoglutarate transaminase 1", "gene_name": "KYAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14902-1", "protein_name": "Indoleamine 2,3-dioxygenase 1", "gene_name": "IDO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5Z0-1", "protein_name": "Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial", "gene_name": "AADAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TDX5-1", "protein_name": "2-amino-3-carboxymuconate-6-semialdehyde decarboxylase", "gene_name": "ACMSD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21097500", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"evidence": [ { "id": "Q969I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q969I6#ptm_processing" }, { "id": "21917917", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21917917" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q969I6-1" } ], "record_id": "pubmed.21917917", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] }, { "title": "The human gene SLC25A29, of solute carrier family 25, encodes a mitochondrial transporter of basic amino acids.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Porcelli V, Fiermonte G, Longo A, Palmieri F", "reference": { "type": "PubMed", "id": "24652292", "url": "https://pubmed.ncbi.nlm.nih.gov/24652292" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24652292", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "De Novo Truncating Mutations in WASF1 Cause Intellectual Disability with Seizures.", "journal": "Am. J. Hum. Genet.", "date": "2018", "authors": "Ito Y, Carss KJ, Duarte ST, Hartley T, Keren B, Kurian MA, Marey I, Charles P, Mendonca C, Nava C, Pfundt R, Sanchis-Juan A, van Bokhoven H, van Essen A, van Ravenswaaij-Arts C, Boycott KM, Kernohan KD, Dyack S, Raymond FL", "reference": { "type": "PubMed", "id": "29961568", "url": "https://pubmed.ncbi.nlm.nih.gov/29961568" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y473-1", "protein_name": "Zinc finger protein 175", "gene_name": "ZNF175", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18859-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ATP5PF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GN5-1", "protein_name": "Cell division cycle-associated 7-like protein", "gene_name": "CDCA7L", "tax_name": "Human" 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SLC38A4 functions as a tumour suppressor in hepatocellular carcinoma through modulating Wnt/beta-catenin/MYC/HMGCS2 axis.", "journal": "British journal of cancer", "date": "2021", "authors": "Li J, Li MH, Wang TT, Liu XN, Zhu XT, Dai YZ, Zhai KC, Liu YD, Lin JL, Ge RL, Sun SH, Wang F, Yuan JH", "reference": { "type": "PubMed", "id": "34274945", "url": "https://pubmed.ncbi.nlm.nih.gov/34274945" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34274945", 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Harper Alesia, De Alwis Natasha, Chien Keegan, Hannan Natalie, Brownfoot Fiona C", "reference": { "type": "PubMed", "id": "36613847", "url": "https://pubmed.ncbi.nlm.nih.gov/36613847" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36613847", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"SLC38A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38508745", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and functional characterization of a GABA/betaine transporter from human kidney.", "journal": "FEBS letters", "date": "1995", "authors": "Rasola A, Galietta LJ, Barone V, Romeo G, Bagnasco S", "reference": { "type": "PubMed", "id": "7589472", "url": "https://pubmed.ncbi.nlm.nih.gov/7589472" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": 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"uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7589472", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional characterization and chromosomal localization of a cloned taurine transporter from human placenta.", "journal": "The Biochemical journal", "date": "1994", "authors": "Ramamoorthy S, Leibach FH, Mahesh VB, Han H, Yang-Feng T, Blakely RD, Ganapathy V", "reference": { "type": "PubMed", "id": "8010975", "url": "https://pubmed.ncbi.nlm.nih.gov/8010975" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8010975", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8101838", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and expression of a novel Na(+)-dependent neutral amino acid transporter structurally related to mammalian Na+/glutamate cotransporters.", "journal": "The Journal of biological chemistry", "date": "1993", "authors": "Shafqat S, Tamarappoo BK, Kilberg MS, Puranam RS, McNamara JO, Guadano-Ferraz A, Fremeau RT Jr", "reference": { "type": "PubMed", "id": "8340364", "url": "https://pubmed.ncbi.nlm.nih.gov/8340364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8340364", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of the sodium-dependent, broad-scope, neutral amino acid transporter Bo from a human placental choriocarcinoma cell line.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Kekuda R, Prasad PD, Fei YJ, Torres-Zamorano V, Sinha S, Yang-Feng TL, Leibach FH, Ganapathy V", "reference": { "type": "PubMed", "id": "8702519", "url": "https://pubmed.ncbi.nlm.nih.gov/8702519" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8702519", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ASCT-1 is a neutral amino acid exchanger with chloride channel activity.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Zerangue N, Kavanaugh MP", "reference": { "type": "PubMed", "id": "8910405", "url": "https://pubmed.ncbi.nlm.nih.gov/8910405" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8910405", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human cationic amino acid transporters hCAT-1, hCAT-2A, and hCAT-2B: three related carriers with distinct transport properties.", "journal": "Biochemistry", "date": "1997", "authors": "Closs EI, Graf P, Habermeier A, Cunningham JM, Forstermann U", "reference": { "type": "PubMed", "id": "9174363", "url": "https://pubmed.ncbi.nlm.nih.gov/9174363" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18581-1", "protein_name": "Cationic amino acid transporter 2", "gene_name": "Slc7a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09143-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "Slc7a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { 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"gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9174363", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 34 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Amino acid transport of y+L-type by heterodimers of 4F2hc/CD98 and members of the glycoprotein-associated amino acid transporter family.", "journal": "The EMBO journal", "date": "1999", "authors": "Pfeiffer R, Rossier G, Spindler B, Meier C, Kuhn L, Verrey F", "reference": { "type": "PubMed", "id": "9878049", "url": "https://pubmed.ncbi.nlm.nih.gov/9878049" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969I6-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "SLC38A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM01-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "SLC7A7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92536-1", "protein_name": "Y+L amino acid transporter 2", "gene_name": "SLC7A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9R0S5-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "Slc7a7", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8N370-1", "protein_name": "Large neutral amino acids transporter small subunit 4", "gene_name": "SLC43A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z2H8-1", "protein_name": "Proton-coupled amino acid transporter 1", "gene_name": "SLC36A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48065-1", "protein_name": "Sodium- and chloride-dependent betaine transporter", "gene_name": "SLC6A12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2J7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT2", "gene_name": "SLC6A15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q495M3-1", "protein_name": "Proton-coupled amino acid transporter 2", "gene_name": "SLC36A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YBV0-1", "protein_name": "Neutral amino acid uniporter 4", "gene_name": "SLC36A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUX1-1", "protein_name": "Sodium-coupled neutral amino acid transporter 5", "gene_name": "SLC38A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q695T7-1", "protein_name": "Sodium-dependent neutral amino acid transporter B(0)AT1", "gene_name": "SLC6A19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43007-1", "protein_name": "Neutral amino acid transporter A", "gene_name": "SLC1A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07837-1", "protein_name": "Amino acid transporter heavy chain SLC3A1", "gene_name": "SLC3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QD8-1", "protein_name": "Sodium-coupled neutral amino acid symporter 2", "gene_name": "SLC38A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31641-1", "protein_name": "Sodium- and chloride-dependent taurine transporter", "gene_name": "SLC6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY5-1", "protein_name": "Cystine/glutamate transporter", "gene_name": "SLC7A11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75387-1", "protein_name": "Large neutral amino acids transporter small subunit 3", "gene_name": "SLC43A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30825-1", "protein_name": "High affinity cationic amino acid transporter 1", "gene_name": "SLC7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI5-1", "protein_name": "Large neutral amino acids transporter small subunit 2", "gene_name": "SLC7A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01650-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "SLC7A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15758-1", "protein_name": "Neutral amino acid transporter B(0)", "gene_name": "SLC1A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS82-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "SLC7A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1K8-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "Slc7a7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WY07-1", "protein_name": "Cationic amino acid transporter 3", "gene_name": "SLC7A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP91-1", "protein_name": "Sodium- and chloride-dependent transporter XTRP3", "gene_name": "SLC6A20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TF71-1", "protein_name": "Monocarboxylate transporter 10", "gene_name": "SLC16A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H9-1", "protein_name": "Sodium-coupled neutral amino acid symporter 1", "gene_name": "SLC38A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969I6", "url": "https://www.uniprot.org/uniprotkb/Q969I6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9878049", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 33 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The mitochondrial transporter family SLC25: identification, properties and physiopathology.", "journal": "Molecular aspects of medicine", "date": "2013", "authors": "Palmieri F", "reference": { "type": "PubMed", "id": "23266187", "url": "https://pubmed.ncbi.nlm.nih.gov/23266187" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3SY17-1", "protein_name": "Mitochondrial nicotinamide adenine dinucleotide transporter SLC25A52", "gene_name": "SLC25A52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZT89-1", "protein_name": "Solute carrier family 25 member 48", "gene_name": "SLC25A48", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQT8-1", "protein_name": "Mitochondrial 2-oxodicarboxylate carrier", "gene_name": "SLC25A21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXI2-1", "protein_name": "Mitochondrial ornithine transporter 2", "gene_name": "SLC25A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3KQZ1-1", "protein_name": "Solute carrier family 25 member 35", "gene_name": "SLC25A35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PIV7-1", "protein_name": "Solute carrier family 25 member 34", "gene_name": "SLC25A34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ4-1", "protein_name": "Mitochondrial glutathione transporter SLC25A39", "gene_name": "SLC25A39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70HW3-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "SLC25A26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUT9-1", "protein_name": "Solute carrier family 25 member 43", "gene_name": "SLC25A43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CQ1-1", "protein_name": "Solute carrier family 25 member 36", "gene_name": "SLC25A36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96H78-1", "protein_name": "Solute carrier family 25 member 44", "gene_name": "SLC25A44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6Q0C1-1", "protein_name": "Solute carrier family 25 member 47", "gene_name": "SLC25A47", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5S1-1", "protein_name": "Mitochondrial carrier protein SCaMC-3L", "gene_name": "SLC25A41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N413-1", "protein_name": "Methylated amino-acid transporter SLC25A45", "gene_name": "SLC25A45", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSK2-1", "protein_name": "Solute carrier family 25 member 33", "gene_name": "SLC25A33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5H9E4-1", "protein_name": "Solute carrier family 25 member 53", "gene_name": "SLC25A53", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6KCM7-1", "protein_name": "Mitochondrial adenyl nucleotide antiporter SLC25A25", "gene_name": "SLC25A25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1U9-1", "protein_name": "Mitochondrial nicotinamide adenine dinucleotide transporter SLC25A51", "gene_name": "SLC25A51", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A46-1", "protein_name": "Mitoferrin-2", "gene_name": "SLC25A28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86VD7-1", "protein_name": "Mitochondrial coenzyme A transporter SLC25A42", "gene_name": "SLC25A42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SVS4-1", "protein_name": "Kidney mitochondrial carrier protein 1", "gene_name": "SLC25A30", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43808-1", "protein_name": "Peroxisomal membrane protein PMP34", "gene_name": "SLC25A17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8R3-1", "protein_name": "Mitochondrial basic amino acids transporter", "gene_name": "SLC25A29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AG3-1", "protein_name": "Mitochondrial outer membrane protein SLC25A46", "gene_name": "SLC25A46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16260-1", "protein_name": "Mitochondrial coenzyme A transporter SLC25A16", "gene_name": "SLC25A16", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95258-1", "protein_name": "Brain mitochondrial carrier protein 1", "gene_name": "SLC25A14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25874-1", "protein_name": "Mitochondrial brown fat uncoupling protein 1", "gene_name": "UCP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBP6-1", "protein_name": "Mitochondrial glutathione transporter SLC25A40", "gene_name": "SLC25A40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1K4-1", "protein_name": "Mitochondrial glutamate carrier 2", "gene_name": "SLC25A18", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q3SY17", "url": "https://www.uniprot.org/uniprotkb/Q3SY17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23266187", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SLC25A51 is a mammalian mitochondrial NAD(+) transporter.", "journal": "Nature", "date": "2020", "authors": "Luongo TS, Eller JM, Lu MJ, Niere M, Raith F, Perry C, Bornstein MR, Oliphint P, Wang L, McReynolds MR, Migaud ME, Rabinowitz JD, Johnson FB, Johnsson K, Ziegler M, Cambronne XA, Baur JA", "reference": { "type": "PubMed", "id": "32906142", "url": "https://pubmed.ncbi.nlm.nih.gov/32906142" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3SY17-1", "protein_name": "Mitochondrial nicotinamide adenine dinucleotide transporter SLC25A52", "gene_name": "SLC25A52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43490-1", "protein_name": "Nicotinamide phosphoribosyltransferase", "gene_name": "NAMPT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40261-1", "protein_name": "Nicotinamide N-methyltransferase", "gene_name": "NNMT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q460N5-6", "protein_name": "Protein mono-ADP-ribosyltransferase PARP14", "gene_name": "PARP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK3-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP4", "gene_name": "PARP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40556-1", "protein_name": "Mitochondrial nicotinamide adenine dinucleotide transporter 1", "gene_name": "YIA6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5HZI9-1", "protein_name": "Mitochondrial nicotinamide adenine dinucleotide transporter SLC25A51", "gene_name": "Slc25a51", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q4G0N4-1", "protein_name": "NAD kinase 2, mitochondrial", "gene_name": "NADK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZQ4-1", "protein_name": "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2", "gene_name": "NMNAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5Y8-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP16", "gene_name": "PARP16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYX0-1", "protein_name": "Renalase", "gene_name": "RNLS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N695-1", "protein_name": "Sodium-coupled monocarboxylate transporter 1", "gene_name": "SLC5A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y226-1", "protein_name": "Solute carrier family 22 member 13", "gene_name": "SLC22A13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1U9-1", "protein_name": "Mitochondrial nicotinamide adenine dinucleotide transporter SLC25A51", "gene_name": "SLC25A51", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28907-1", "protein_name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", "gene_name": "CD38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IA69-1", "protein_name": "Glutamine-dependent NAD(+) synthetase", "gene_name": "NADSYN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95544-1", "protein_name": "NAD kinase", "gene_name": "NADK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T66-1", "protein_name": "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3", "gene_name": "NMNAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWW6-1", "protein_name": "Nicotinamide riboside kinase 1", "gene_name": "NMRK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI5-1", "protein_name": "Nicotinamide riboside kinase 2", "gene_name": "NMRK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2NL67-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP6", "gene_name": "PARP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3A8-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP8", "gene_name": "PARP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXQ6-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP9", "gene_name": "PARP9", "tax_name": "Human" }, { 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Haemost.", "date": "2004", "authors": "Bl\u00e4ser Susanne, Horn Julia, W\u00fcrmell Paul, Bauer Heike, Str\u00fcmpell Sandra, Nurden Paquita, Pagenstecher Axel, Busse Anja, Wunderle Daniela, Hainmann Ina, Zieger Barbara", "reference": { "type": "PubMed", "id": "15116257", "url": "https://pubmed.ncbi.nlm.nih.gov/15116257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43236-7", "protein_name": "Septin-4", "gene_name": "SEPTIN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92599-1", "protein_name": "Septin-8", "gene_name": "SEPTIN8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43236", "url": "https://www.uniprot.org/uniprotkb/O43236" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15116257", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of the proapoptotic ARTS protein by ubiquitin-mediated degradation.", "journal": "The Journal of biological chemistry", "date": "2005-07-08", "authors": "Lotan Rona, Rotem Asaf, Gonen Hedva, Finberg John P M, Kemeny Stav, Steller Hermann, Ciechanover Aaron, Larisch Sarit", "reference": { "type": "PubMed", "id": "15837787", "url": "https://pubmed.ncbi.nlm.nih.gov/15837787" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43236-7", "protein_name": "Septin-4", "gene_name": "SEPTIN4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43236", "url": "https://www.uniprot.org/uniprotkb/O43236" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15837787", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sept4, a component of presynaptic scaffold and Lewy bodies, is required for the suppression of alpha-synuclein neurotoxicity.", "journal": "Neuron", "date": "2007", "authors": "Ihara Masafumi, Yamasaki Nobuyuki, Hagiwara Akari, Tanigaki Ai, Kitano Ayumi, Hikawa Rie, Tomimoto Hidekazu, Noda Makoto, Takanashi Masashi, Mori Hideo, Hattori Nobutaka, Miyakawa Tsuyoshi, Kinoshita Makoto", "reference": { "type": "PubMed", "id": "17296554", "url": "https://pubmed.ncbi.nlm.nih.gov/17296554" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43236-7", "protein_name": "Septin-4", "gene_name": "SEPTIN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P97772-1", "protein_name": "Metabotropic glutamate receptor 1", "gene_name": "Grm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P24529-1", "protein_name": "Tyrosine 3-monooxygenase", "gene_name": "Th", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O55042-1", "protein_name": "Alpha-synuclein", "gene_name": "Snca", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z2Q6-1", "protein_name": "Septin-5", "gene_name": "Septin5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61327-1", "protein_name": "Sodium-dependent dopamine transporter", "gene_name": "Slc6a3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35526-1", "protein_name": "Syntaxin-1A", "gene_name": "Stx1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q01959-1", "protein_name": "Sodium-dependent dopamine transporter", "gene_name": "SLC6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08247-1", "protein_name": "Synaptophysin", "gene_name": "SYP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O35382-1", "protein_name": "Exocyst complex component 4", "gene_name": "Exoc4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P28661-1", "protein_name": "Septin-4", "gene_name": "Septin4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43236", "url": "https://www.uniprot.org/uniprotkb/O43236" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17296554", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"database": "UniProtKB", "id": "P98170", "url": "https://www.uniprot.org/uniprotkb/P98170" }, { "database": "PubMed", "id": "21695558", "url": "https://pubmed.ncbi.nlm.nih.gov/21695558" } ], "uniprot_canonical_ac": "P98170-1" }, { "start_pos": 314, "end_pos": 314, "sequence_org": "E", "sequence_mut": "S", "comment": "Decreased interaction with DIABLO/SMAC and with HTRA2. Decreases interaction with HTRA2; when associated with D-259 or A-310. No effect on interaction with SEPTIN4 isoform ARTS.", "evidence": [ { "database": "UniProtKB", "id": "P98170", "url": "https://www.uniprot.org/uniprotkb/P98170" }, { "database": "PubMed", "id": "11604410", "url": "https://pubmed.ncbi.nlm.nih.gov/11604410" }, { "database": "PubMed", "id": "21695558", "url": "https://pubmed.ncbi.nlm.nih.gov/21695558" } ], "uniprot_canonical_ac": "P98170-1" }, { "start_pos": 343, "end_pos": 343, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on interaction with SEPTIN4 isoform ARTS.", "evidence": [ { "database": "UniProtKB", "id": "P98170", "url": "https://www.uniprot.org/uniprotkb/P98170" }, { "database": "PubMed", "id": "21695558", "url": "https://pubmed.ncbi.nlm.nih.gov/21695558" } ], "uniprot_canonical_ac": "P98170-1" } ], "record_id": "pubmed.21695558", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"Mouse" }, { "uniprot_canonical_ac": "Q9JIY5-1", "protein_name": "Serine protease HTRA2, mitochondrial", "gene_name": "Htra2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43236", "url": "https://www.uniprot.org/uniprotkb/O43236" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 790, "end_pos": 790, "sequence_org": "C", "sequence_mut": "A", "comment": "Failure to form ubiquitin thioester complex.", "evidence": [ { "database": "UniProtKB", "id": "O15033", "url": "https://www.uniprot.org/uniprotkb/O15033" }, { "database": "PubMed", "id": "23479728", "url": "https://pubmed.ncbi.nlm.nih.gov/23479728" } ], "uniprot_canonical_ac": "O15033-1" } ], "record_id": "pubmed.23479728", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Degradation of Bcl-2 by XIAP and ARTS Promotes Apoptosis.", "journal": "Cell reports", "date": "2017", "authors": "Edison N, Curtz Y, Paland N, Mamriev D, Chorubczyk N, Haviv-Reingewertz T, Kfir N, Morgenstern D, Kupervaser M, Kagan J, Kim HT, Larisch S", "reference": { "type": "PubMed", "id": "29020630", "url": "https://pubmed.ncbi.nlm.nih.gov/29020630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43236-7", "protein_name": "Septin-4", "gene_name": "SEPTIN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98170-1", "protein_name": "E3 ubiquitin-protein ligase XIAP", "gene_name": "XIAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10417-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "Bcl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43236", "url": "https://www.uniprot.org/uniprotkb/O43236" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29020630", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ARTS mediates apoptosis and regeneration of the intestinal stem cell niche.", "journal": "Nat. Commun.", "date": "2018", "authors": "Koren E, Yosefzon Y, Ankawa R, Soteriou D, Jacob A, Nevelsky A, Ben-Yosef R, Bar-Sela G, Fuchs Y", "reference": { "type": "PubMed", "id": "30389919", "url": "https://pubmed.ncbi.nlm.nih.gov/30389919" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43236-7", "protein_name": "Septin-4", "gene_name": "SEPTIN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98170-1", "protein_name": "E3 ubiquitin-protein ligase XIAP", "gene_name": "XIAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02248-1", "protein_name": "Catenin beta-1", "gene_name": "Ctnnb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60989-1", "protein_name": "E3 ubiquitin-protein ligase XIAP", "gene_name": "Xiap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P28661-1", "protein_name": "Septin-4", "gene_name": "Septin4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43236", "url": "https://www.uniprot.org/uniprotkb/O43236" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30389919", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p53 induces ARTS to promote mitochondrial apoptosis.", "journal": "Cell death & disease", "date": "2021", "authors": "Hao Q, Chen J, Liao J, Huang Y, Gan Y, Larisch S, Zeng SX, Lu H, Zhou X", "reference": { "type": "PubMed", "id": "33627621", "url": "https://pubmed.ncbi.nlm.nih.gov/33627621" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43236-7", "protein_name": "Septin-4", "gene_name": "SEPTIN4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43236", "url": "https://www.uniprot.org/uniprotkb/O43236" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33627621", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biallelic loss-of-function mutations in SEPTIN4 (C17ORF47), encoding a conserved annulus protein, cause thin midpiece spermatozoa and male infertility in humans.", "journal": "Human mutation", "date": "2022-12", "authors": "Wang Guanxiong, Zhu Xiaoyu, Gao Yang, Lv Mingrong, Li Kuokuo, Tang Dongdong, Wu Huan, Xu Chuan, Geng Hao, Shen Qunshan, Zha Xiaomin, Duan Zongliu, Zhang Jingjing, Hua Rong, Tao Fangbiao, Zhou Ping, Wei Zhaolian, Cao Yunxia, Guo Rui, He Xiaojin", "reference": { "type": "PubMed", "id": "36135717", "url": 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