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"Chenodeoxycholic acid-mediated activation of the farnesoid X receptor negatively regulates hydroxysteroid sulfotransferase.", "journal": "Drug metabolism and pharmacokinetics", "date": "2006-08", "authors": "Miyata Masaaki, Matsuda Yoshiki, Tsuchiya Hiroyuki, Kitada Hirotaka, Akase Takanori, Shimada Miki, Nagata Kiyoshi, Gonzalez Frank J, Yamazoe Yasushi", "reference": { "type": "PubMed", "id": "16946559", "url": "https://pubmed.ncbi.nlm.nih.gov/16946559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60641-1", "protein_name": "Bile acid receptor", "gene_name": "Nr1h4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60641", "url": "https://www.uniprot.org/uniprotkb/Q60641" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus 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Jones R, Ponugoti B, Yoon H, Wu SY, Chiang CM, Willson TM, Kemper JK", "reference": { "type": "PubMed", "id": "18842595", "url": "https://pubmed.ncbi.nlm.nih.gov/18842595" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60641-1", "protein_name": "Bile acid receptor", "gene_name": "Nr1h4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60641", "url": "https://www.uniprot.org/uniprotkb/Q60641" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18842595", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ 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"Nuclear bile acid receptor FXR protects against intestinal tumorigenesis.", "journal": "Cancer Res.", "date": "2008", "authors": "Modica Salvatore, Murzilli Stefania, Salvatore Lorena, Schmidt Daniel R, Moschetta Antonio", "reference": { "type": "PubMed", "id": "19047134", "url": "https://pubmed.ncbi.nlm.nih.gov/19047134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60641-1", "protein_name": "Bile acid receptor", "gene_name": "Nr1h4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60641", "url": "https://www.uniprot.org/uniprotkb/Q60641" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19047134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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Biophys. 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"Farnesoid X receptor represses hepatic human APOA gene expression.", "journal": "The Journal of clinical investigation", "date": "2011-09", "authors": "Chennamsetty Indumathi, Claudel Thierry, Kostner Karam M, Baghdasaryan Anna, Kratky Dagmar, Levak-Frank Sanja, Frank Sasa, Gonzalez Frank J, Trauner Michael, Kostner Gert M", "reference": { "type": "PubMed", "id": "21804189", "url": "https://pubmed.ncbi.nlm.nih.gov/21804189" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60641-1", "protein_name": "Bile acid receptor", "gene_name": "Nr1h4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60641", "url": "https://www.uniprot.org/uniprotkb/Q60641" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], 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Bellafante Elena, Murzilli Stefania, Salvatore Lorena, Celli Nicola, Di Tullio Giuseppe, Palasciano Giuseppe, Moustafa Tarek, Halilbasic Emina, Trauner Michael, Moschetta Antonio", "reference": { "type": "PubMed", "id": "22057115", "url": "https://pubmed.ncbi.nlm.nih.gov/22057115" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60641-1", "protein_name": "Bile acid receptor", "gene_name": "Nr1h4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60641", "url": "https://www.uniprot.org/uniprotkb/Q60641" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22057115", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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} ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23372731", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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receptor deletion from Nkx6.2 expressing cells causes impaired cognitive, motivation and anxiety phenotypes in mice.", "journal": "Scientific reports", "date": "2023-11-09", "authors": "Bechelli Lucila, Tomasella Eugenia, Cardoso Sofia Lopez, Belmonte Martina, Gelman Diego M", "reference": { "type": "PubMed", "id": "37945756", "url": "https://pubmed.ncbi.nlm.nih.gov/37945756" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D3Z4R4-1", "protein_name": "NK6 homeobox 2", "gene_name": "Nkx6-2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "D3Z4R4", "url": "https://www.uniprot.org/uniprotkb/D3Z4R4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37945756", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A RING finger protein Praja1 regulates Dlx5-dependent transcription through its ubiquitin ligase activity for the Dlx/Msx-interacting MAGE/Necdin family protein, Dlxin-1.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Sasaki A, Masuda Y, Iwai K, Ikeda K, Watanabe K", "reference": { "type": "PubMed", "id": "11959851", "url": "https://pubmed.ncbi.nlm.nih.gov/11959851" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O55176-3", "protein_name": "E3 ubiquitin-protein ligase Praja-1", "gene_name": "Pja1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NG27-1", "protein_name": "E3 ubiquitin-protein ligase Praja-1", "gene_name": "PJA1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O55176", "url": "https://www.uniprot.org/uniprotkb/O55176" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 533, "end_pos": 533, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on MAGED1 binding. Decrease in ubiquitination of MAGED1. No inhibition of DLX5-dependent transcriptional activity.", "evidence": [ { "database": "UniProtKB", "id": "O55176", "url": "https://www.uniprot.org/uniprotkb/O55176" }, { "database": "PubMed", "id": "11959851", "url": "https://pubmed.ncbi.nlm.nih.gov/11959851" } ], "uniprot_canonical_ac": "O55176-3" } ], "record_id": "pubmed.11959851", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PJA1, encoding a RING-H2 finger ubiquitin ligase, is a novel human X chromosome gene abundantly expressed in brain.", "journal": "Genomics", "date": "2002", "authors": "Yu P, Chen Y, Tagle DA, Cai T", "reference": { "type": "PubMed", "id": "12036302", "url": "https://pubmed.ncbi.nlm.nih.gov/12036302" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O55176-3", "protein_name": "E3 ubiquitin-protein ligase Praja-1", "gene_name": "Pja1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80U04-1", "protein_name": "E3 ubiquitin-protein ligase Praja-2", "gene_name": "Pja2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43164-1", "protein_name": "E3 ubiquitin-protein ligase Praja-2", "gene_name": "PJA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62838-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "Ube2d2a; Ube2d2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NG27-1", "protein_name": "E3 ubiquitin-protein ligase Praja-1", "gene_name": "PJA1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O55176", "url": "https://www.uniprot.org/uniprotkb/O55176" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12036302", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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Biol. Chem.", "date": "2004", "authors": "Allende Maria L, Sasaki Teiji, Kawai Hiromichi, Olivera Ana, Mi Yide, van Echten-Deckert Gerhild, Hajdu Richard, Rosenbach Mark, Keohane Carol Ann, Mandala Suzanne, Spiegel Sarah, Proia Richard L", "reference": { "type": "PubMed", "id": "15459201", "url": "https://pubmed.ncbi.nlm.nih.gov/15459201" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI15-1", "protein_name": "Sphingosine kinase 1", "gene_name": "Sphk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI15", "url": "https://www.uniprot.org/uniprotkb/Q8CI15" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15459201", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Essential role for sphingosine kinases in neural and vascular development.", "journal": "Mol. Cell. Biol.", "date": "2005", "authors": "Mizugishi Kiyomi, Yamashita Tadashi, Olivera Ana, Miller Georgina F, Spiegel Sarah, Proia Richard L", "reference": { "type": "PubMed", "id": "16314531", "url": "https://pubmed.ncbi.nlm.nih.gov/16314531" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI15-1", "protein_name": "Sphingosine kinase 1", "gene_name": "Sphk1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08530-1", "protein_name": "Sphingosine 1-phosphate receptor 1", "gene_name": "S1pr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JIA7-1", "protein_name": "Sphingosine kinase 2", "gene_name": "Sphk2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI15", "url": "https://www.uniprot.org/uniprotkb/Q8CI15" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16314531", "abstract": "", 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Igarashi Y", "reference": { "type": "PubMed", "id": "16368679", "url": "https://pubmed.ncbi.nlm.nih.gov/16368679" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI15-1", "protein_name": "Sphingosine kinase 1", "gene_name": "Sphk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI15", "url": "https://www.uniprot.org/uniprotkb/Q8CI15" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16368679", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, 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functional characterization of murine sphingosine kinase.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Kohama T, Olivera A, Edsall L, Nagiec MM, Dickson R, Spiegel S", "reference": { "type": "PubMed", "id": "9726979", "url": "https://pubmed.ncbi.nlm.nih.gov/9726979" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI15-1", "protein_name": "Sphingosine kinase 1", "gene_name": "Sphk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI15", "url": "https://www.uniprot.org/uniprotkb/Q8CI15" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9726979", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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Ophthalmol. Vis. Sci.", "date": "2004", "authors": "Rice Dennis S, Huang Wenhu, Jones Holly A, Hansen Gwenn, Ye Gui-Lan, Xu Nianha, Wilson Elizabeth A, Troughton Kathy, Vaddi Kris, Newton Robert C, Zambrowicz Brian P, Sands Arthur T", "reference": { "type": "PubMed", "id": "15277503", "url": "https://pubmed.ncbi.nlm.nih.gov/15277503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q62178-1", "protein_name": "Semaphorin-4A", "gene_name": "Sema4a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q62178", "url": "https://www.uniprot.org/uniprotkb/Q62178" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15277503", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of Zbp1 by miR-99b-5p in microglia controls the development of schizophrenia-like symptoms in mice.", "journal": "The EMBO journal", "date": "2024-04", "authors": "Kaurani Lalit, Islam Md Rezaul, Heilbronner Urs, Kr\u00fcger Dennis M, Zhou Jiayin, Methi Aditi, Strauss Judith, Pradhan Ranjit, Schr\u00f6der Sophie, Burkhardt Susanne, Schuetz Anna-Lena, Pena Tonatiuh, Erlebach Lena, B\u00fchler Anika, Budde Monika, Senner Fanny, Kohshour Mojtaba Oraki, Schulte Eva C, Schmau\u00df Max, Reininghaus Eva Z, Juckel Georg, Kronenberg-Versteeg Deborah, Delalle Ivana, Odoardi Francesca, Fl\u00fcgel Alexander, Schulze Thomas G, Falkai Peter, Sananbenesi Farahnaz, Fischer Andre", "reference": { "type": "PubMed", "id": "38528182", "url": "https://pubmed.ncbi.nlm.nih.gov/38528182" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9Q8Q8-1", "protein_name": "Sperm acrosome 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PACSIN 3 is a novel SH3 domain cytoplasmic adapter protein of the pacsin-syndapin-FAP52 gene family.", "journal": "Gene", "date": "2001", "authors": "Sumoy L, Pluvinet R, Andreu N, Estivill X, Escarceller M", "reference": { "type": "PubMed", "id": "11179684", "url": "https://pubmed.ncbi.nlm.nih.gov/11179684" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99JB8-1", "protein_name": "Protein kinase C and casein kinase II substrate protein 3", "gene_name": "Pacsin3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UNF0-1", "protein_name": "Protein kinase C and casein kinase substrate in neurons protein 2", "gene_name": "PACSIN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY11-1", "protein_name": "Protein kinase C and casein kinase substrate in neurons protein 1", "gene_name": "PACSIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKS6-1", "protein_name": "Protein kinase C and casein kinase substrate in neurons protein 3", "gene_name": "PACSIN3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99JB8", "url": "https://www.uniprot.org/uniprotkb/Q99JB8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11179684", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PACSIN3 overexpression increases adipocyte glucose transport through GLUT1.", "journal": "Biochemical and biophysical research communications", "date": "2007-04-13", "authors": "Roach William, Plomann Markus", "reference": { "type": "PubMed", "id": "17320047", "url": "https://pubmed.ncbi.nlm.nih.gov/17320047" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99JB8-1", "protein_name": "Protein kinase C and casein kinase II substrate protein 3", "gene_name": "Pacsin3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P17809-1", "protein_name": "Solute carrier family 2, facilitated glucose transporter member 1", "gene_name": "Slc2a1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99JB8", "url": "https://www.uniprot.org/uniprotkb/Q99JB8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17320047", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stimulus-specific modulation of the cation channel TRPV4 by PACSIN 3.", "journal": "The Journal of biological chemistry", "date": "2008-03-07", "authors": "D'hoedt Dieter, Owsianik Grzegorz, Prenen Jean, Cuajungco Math Pham, Grimm Christian, Heller Stefan, Voets Thomas, Nilius Bernd", "reference": { "type": "PubMed", "id": "18174177", "url": "https://pubmed.ncbi.nlm.nih.gov/18174177" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99JB8-1", "protein_name": "Protein kinase C and casein kinase II substrate protein 3", "gene_name": "Pacsin3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPK8-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "Trpv4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99JB8", "url": "https://www.uniprot.org/uniprotkb/Q99JB8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18174177", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, 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