[ { "title": "Mevalonate kinase is localized in rat liver peroxisomes.", "journal": "J. Biol. Chem.", "date": "1992", "authors": "Stamellos K D, Shackelford J E, Tanaka R D, Krisans S K", "reference": { "type": "PubMed", "id": "1312092", "url": "https://pubmed.ncbi.nlm.nih.gov/1312092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17256-1", "protein_name": "Mevalonate kinase", "gene_name": "Mvk", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P17256", "url": "https://www.uniprot.org/uniprotkb/P17256" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1312092", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression, purification, and characterization of His20 mutants of rat mevalonate kinase.", "journal": "Protein expression and purification", "date": "2003", "authors": "Chu X, Li D", "reference": { "type": "PubMed", "id": "14680942", "url": "https://pubmed.ncbi.nlm.nih.gov/14680942" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17256-1", "protein_name": "Mevalonate kinase", "gene_name": "Mvk", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P17256", "url": "https://www.uniprot.org/uniprotkb/P17256" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "mutagenesis": [ { "start_pos": 20, "end_pos": 20, "sequence_org": "H", "sequence_mut": "K", "comment": "Induce significant secondary structural change.", "evidence": [ { "database": "UniProtKB", "id": "P17256", "url": "https://www.uniprot.org/uniprotkb/P17256" }, { "database": "PubMed", "id": "14680942", "url": "https://pubmed.ncbi.nlm.nih.gov/14680942" } ], "uniprot_canonical_ac": "P17256-1" }, { "start_pos": 20, "end_pos": 20, "sequence_org": "H", "sequence_mut": "L", "comment": "Approximately 5-fold decrease in Vmax for (R,S)-mevalonate. Approximately 3-fold increase in KM for (R,S)-mevalonate.", "evidence": [ { "database": "UniProtKB", "id": "P17256", "url": "https://www.uniprot.org/uniprotkb/P17256" }, { "database": "PubMed", "id": "14680942", "url": "https://pubmed.ncbi.nlm.nih.gov/14680942" } ], "uniprot_canonical_ac": "P17256-1" }, { "start_pos": 20, "end_pos": 20, "sequence_org": "H", "sequence_mut": "Y", "comment": "Approximately 5-fold decrease in Vmax for (R,S)-mevalonate. 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Approximately 4-fold increase affinity for ATP. Normal affinity for mevalonate.", "evidence": [ { "database": "UniProtKB", "id": "Q03426", "url": "https://www.uniprot.org/uniprotkb/Q03426" }, { "database": "PubMed", "id": "18302342", "url": "https://pubmed.ncbi.nlm.nih.gov/18302342" } ], "uniprot_canonical_ac": "Q03426-1" }, { "start_pos": 149, "end_pos": 149, "sequence_org": "Y", "sequence_mut": "A", "comment": "No effect on kinase activity. Approximately 4- and 8-fold decrease affinities for ATP and mevalonate, respectively.", "evidence": [ { "database": "UniProtKB", "id": "Q03426", "url": "https://www.uniprot.org/uniprotkb/Q03426" }, { "database": "PubMed", "id": "18302342", "url": "https://pubmed.ncbi.nlm.nih.gov/18302342" } ], "uniprot_canonical_ac": "Q03426-1" }, { "start_pos": 196, "end_pos": 196, "sequence_org": "I", "sequence_mut": "A", "comment": "No effect on kinase activity. Approximately 2- and 3-fold decrease affinities for ATP and mevalonate, respectively.", "evidence": [ { "database": "UniProtKB", "id": "Q03426", "url": "https://www.uniprot.org/uniprotkb/Q03426" }, { "database": "PubMed", "id": "18302342", "url": "https://pubmed.ncbi.nlm.nih.gov/18302342" } ], "uniprot_canonical_ac": "Q03426-1" }, { "start_pos": 56, "end_pos": 56, "sequence_org": "I", "sequence_mut": "A", "comment": "No effect on kinase activity. 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U.S.A.", "date": "1990", "authors": "Tanaka RD, Lee LY, Schafer BL, Kratunis VJ, Mohler WA, Robinson GW, Mosley ST", "reference": { "type": "PubMed", "id": "2158094", "url": "https://pubmed.ncbi.nlm.nih.gov/2158094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17256-1", "protein_name": "Mevalonate kinase", "gene_name": "Mvk", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P17256", "url": "https://www.uniprot.org/uniprotkb/P17256" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2158094", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Lewandowska MA, Krzyzanowska S, Jundzill A, Rasmus M, Warda K, Gagat M, Deptula A, Helmin-Basa A, Holysz M, Nowacki M, Buchholz L, Bodnar M, Marszalek A, Grzanka A, Jozwicki W, Michalkiewicz J, Drewa T", "reference": { "type": "PubMed", "id": "25957583", "url": "https://pubmed.ncbi.nlm.nih.gov/25957583" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1MAA7-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "Lamc1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1MAA7", "url": "https://www.uniprot.org/uniprotkb/F1MAA7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.25957583", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } 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U.S.A.", "date": "1994", "authors": "Lambert J R, Bilanchone V W, Cumsky M G", "reference": { "type": "PubMed", "id": "8041793", "url": "https://pubmed.ncbi.nlm.nih.gov/8041793" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33417-1", "protein_name": "Intrastrand cross-link recognition protein", "gene_name": "IXR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P33417", "url": "https://www.uniprot.org/uniprotkb/P33417" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8041793", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Struct. Mol. Biol.", "date": "2023", "authors": "Li L., Sun D., Wang S., Zhou X., Yang Y., Wang G., Ou X., Lian Y.", "reference": { "type": "PubMed", "id": "37696957", "url": "https://pubmed.ncbi.nlm.nih.gov/37696957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33448-1", "protein_name": "Mitochondrial import receptor subunit TOM6", "gene_name": "TOM6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P33448", "url": "https://www.uniprot.org/uniprotkb/P33448" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.37696957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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journal", "date": "1993-06", "authors": "Jansen R, Tollervey D, Hurt E C", "reference": { "type": "PubMed", "id": "8508778", "url": "https://pubmed.ncbi.nlm.nih.gov/8508778" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33750-1", "protein_name": "Protein SOF1", "gene_name": "SOF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15646-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "NOP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P33750", "url": "https://www.uniprot.org/uniprotkb/P33750" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8508778", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of 12 new yeast mitochondrial ribosomal proteins including 6 that have no prokaryotic homologues.", "journal": "J. Biol. Chem.", "date": "2001", "authors": "Saveanu C, Fromont-Racine M, Harington A, Ricard F, Namane A, Jacquier A", "reference": { "type": "PubMed", "id": "11278769", "url": "https://pubmed.ncbi.nlm.nih.gov/11278769" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33759-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "MRPS5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36056-1", "protein_name": "Ribosome assembly protein RSM22, mitochondrial", "gene_name": "RSM22", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02950-1", "protein_name": "Small ribosomal subunit protein bS1m", "gene_name": "MRP51", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10662-1", "protein_name": "Small ribosomal subunit protein mS43", "gene_name": "MRP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10663-1", "protein_name": "Small ribosomal subunit protein uS14m", "gene_name": "MRP2", "tax_name": "Baker's 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Microbiol.", "date": "1995", "authors": "Kowalski L R, Kondo K, Inouye M", "reference": { "type": "PubMed", "id": "7746155", "url": "https://pubmed.ncbi.nlm.nih.gov/7746155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33890-1", "protein_name": "Cold shock-induced protein TIR2", "gene_name": "TIR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27654-1", "protein_name": "Temperature shock-inducible protein 1", "gene_name": "TIP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10863-1", "protein_name": "Cold shock-induced protein TIR1", "gene_name": "TIR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P33890", "url": "https://www.uniprot.org/uniprotkb/P33890" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7746155", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PET112, a Saccharomyces cerevisiae nuclear gene required to maintain rho+ mitochondrial DNA.", "journal": "Curr. Genet.", "date": "1994", "authors": "Mulero J J, Rosenthal J K, Fox T D", "reference": { "type": "PubMed", "id": "8082172", "url": "https://pubmed.ncbi.nlm.nih.gov/8082172" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33893-1", "protein_name": "Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial", "gene_name": "PET112", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P33893", "url": "https://www.uniprot.org/uniprotkb/P33893" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8082172", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Golgi-to-late endosome trafficking of the yeast pheromone processing enzyme Ste13p is regulated by a phosphorylation site in its cytosolic domain.", "journal": "Molecular biology of the cell", "date": "2005-03", "authors": "Johnston Holly D, Foote Christopher, Santeford Andrea, Nothwehr Steven F", "reference": { "type": "PubMed", "id": "15647379", "url": "https://pubmed.ncbi.nlm.nih.gov/15647379" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P33894-1", "protein_name": 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Biol. Cell", "date": "1994", "authors": "Kadowaki T, Hitomi M, Chen S, Tartakoff A M", "reference": { "type": "PubMed", "id": "7865887", "url": "https://pubmed.ncbi.nlm.nih.gov/7865887" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34232-1", "protein_name": "mRNA transport regulator MTR2", "gene_name": "MTR2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34232", "url": "https://www.uniprot.org/uniprotkb/P34232" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7865887", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Microbiol.", "date": "2002", "authors": "Fichtner Lars, Frohloff Frank, Jablonowski Daniel, Stark Michael J R, Schaffrath Raffael", "reference": { "type": "PubMed", "id": "12139626", "url": "https://pubmed.ncbi.nlm.nih.gov/12139626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34253-1", "protein_name": "Protein KTI12", "gene_name": "KTI12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42935-1", "protein_name": "Elongator complex protein 2", "gene_name": "ELP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06706-1", "protein_name": "Elongator complex protein 1", "gene_name": "IKI3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34253", "url": "https://www.uniprot.org/uniprotkb/P34253" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Physical and functional interaction between Elongator and the chromatin-associated Kti12 protein.", "journal": "The Journal of biological chemistry", "date": "2005-05-20", "authors": "Petrakis Thodoris G, S\u00f8gaard T Max M, Erdjument-Bromage Hediye, Tempst Paul, Svejstrup Jesper Q", "reference": { "type": "PubMed", "id": "15772087", "url": "https://pubmed.ncbi.nlm.nih.gov/15772087" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34253-1", "protein_name": "Protein KTI12", "gene_name": "KTI12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02884-1", "protein_name": "Elongator complex protein 4", "gene_name": "ELP4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02908-1", "protein_name": "Elongator complex protein 3", "gene_name": "ELP3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34253", "url": "https://www.uniprot.org/uniprotkb/P34253" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C 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"authors": "Johnston S C, Riddle S M, Cohen R E, Hill C P", "reference": { "type": "PubMed", "id": "10406793", "url": "https://pubmed.ncbi.nlm.nih.gov/10406793" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35127-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase YUH1", "gene_name": "YUH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CG63-1", "protein_name": "Polyubiquitin", "gene_name": "UBI4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35127", "url": "https://www.uniprot.org/uniprotkb/P35127" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10406793", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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neurodegenerative disorders is hydrolyzed by ubiquitin C-terminal hydrolase L3 (UCH-L3).", "journal": "FEBS letters", "date": "2011", "authors": "Dennissen FJ, Kholod N, Hermes DJ, Kemmerling N, Steinbusch HW, Dantuma NP, van Leeuwen FW", "reference": { "type": "PubMed", "id": "21762696", "url": "https://pubmed.ncbi.nlm.nih.gov/21762696" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35127-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase YUH1", "gene_name": "YUH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15374-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase isozyme L3", "gene_name": "UCHL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JKB1-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase isozyme L3", "gene_name": "Uchl3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" } ], "species": [ { "name": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Purification of a ubiquitin protein peptidase from yeast with efficient in vitro assays.", "journal": "The Journal of biological chemistry", "date": "1989-12-05", "authors": "Liu C C, Miller H I, Kohr W J, Silber J I", "reference": { "type": "PubMed", "id": "2555355", "url": "https://pubmed.ncbi.nlm.nih.gov/2555355" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35127-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase YUH1", "gene_name": "YUH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35127", "url": "https://www.uniprot.org/uniprotkb/P35127" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2555355", "abstract": "", "glycosylation": [], "mutagenesis": [], 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U.S.A.", "date": "1997", "authors": "Dolinski K, Muir S, Cardenas M, Heitman J", "reference": { "type": "PubMed", "id": "9371805", "url": "https://pubmed.ncbi.nlm.nih.gov/9371805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35176-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase D", "gene_name": "CPR5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06205-1", "protein_name": "FK506-binding protein 4", "gene_name": "FPR4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35176", "url": "https://www.uniprot.org/uniprotkb/P35176" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9371805", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Cell. 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Yeast homologues of three BLOC-1 subunits highlight KxDL proteins as conserved interactors of BLOC-1.", "journal": "Traffic (Copenhagen, Denmark)", "date": "2011", "authors": "Hayes MJ, Bryon K, Satkurunathan J, Levine TP", "reference": { "type": "PubMed", "id": "21159114", "url": "https://pubmed.ncbi.nlm.nih.gov/21159114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35727-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit BLI1", "gene_name": "BLI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48232-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit SNN1", "gene_name": "SNN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40003-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit VAB2", "gene_name": "VAB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53158-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit KXD1", "gene_name": "KXD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06071-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit BLS1", "gene_name": "BLS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06333-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit CNL1", "gene_name": "CNL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35727", "url": "https://www.uniprot.org/uniprotkb/P35727" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.21159114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"uniprot_canonical_ac": "P35731-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] reductase", "gene_name": "OAR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12283-1", "protein_name": "Malonyl CoA-acyl carrier protein transacylase, mitochondrial", "gene_name": "MCT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35731", "url": "https://www.uniprot.org/uniprotkb/P35731" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9388293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stt4 PI 4-kinase localizes to the plasma membrane and functions in the Pkc1-mediated MAP kinase cascade.", "journal": "Developmental cell", "date": "2002-05", "authors": "Audhya Anjon, Emr Scott D", "reference": { "type": "PubMed", "id": "12015967", "url": "https://pubmed.ncbi.nlm.nih.gov/12015967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35735-1", "protein_name": "Protein SFK1", "gene_name": "SFK1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35735", "url": "https://www.uniprot.org/uniprotkb/P35735" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12015967", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of the genes for mitochondrial ribosomal proteins of Saccharomyces cerevisiae.", "journal": "Eur. J. Biochem.", "date": "1997", "authors": "Kitakawa M, Graack H R, Grohmann L, Goldschmidt-Reisin S, Herfurth E, Wittmann-Liebold B, Nishimura T, Isono K", "reference": { "type": "PubMed", "id": "9151978", "url": "https://pubmed.ncbi.nlm.nih.gov/9151978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35996-1", "protein_name": "Large ribosomal subunit protein uL14m", "gene_name": "MRPL38", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36520-1", "protein_name": "Large ribosomal subunit protein uL15m", "gene_name": "MRPL10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36523-1", "protein_name": "Large ribosomal subunit protein mL57", "gene_name": "MRPL15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36525-1", "protein_name": "Large ribosomal subunit protein bL28m", "gene_name": "MRPL24", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36528-1", "protein_name": "Large ribosomal subunit protein mL46", "gene_name": "MRPL17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38064-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "MRPL16", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28778-1", "protein_name": "Small ribosomal subunit protein bS6m", "gene_name": "MRP17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40858-1", "protein_name": "Large ribosomal subunit protein bL21m", "gene_name": "MRPL49", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42847-1", "protein_name": "Small ribosomal subunit protein uS11m", "gene_name": "MRPS18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P51998-1", "protein_name": "Large ribosomal subunit protein uL4m", "gene_name": "YML6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53128-1", "protein_name": "Methylenetetrahydrofolate reductase 2", "gene_name": "MET13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53875-1", "protein_name": "Large ribosomal subunit protein uL11m", "gene_name": "MRPL19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06678-1", "protein_name": "Large ribosomal subunit protein mL38", "gene_name": "MRPL35", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12487-1", "protein_name": "Large ribosomal subunit protein uL13m", "gene_name": "MRPL23", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38796-1", "protein_name": "Protein phosphatase methylesterase 1", "gene_name": "PPE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O75012-1", "protein_name": "Small ribosomal subunit protein mS37", "gene_name": "MRP10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P12686-1", "protein_name": "Small ribosomal subunit protein mS27", "gene_name": "MRP13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32387-1", "protein_name": "Large ribosomal subunit protein uL23m", "gene_name": "MRP20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32904-1", "protein_name": "Large ribosomal subunit protein uL6m", "gene_name": "MRPL6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35996", "url": "https://www.uniprot.org/uniprotkb/P35996" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9151978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Biophys. Res. 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biology", "date": "2001-07", "authors": "Zenklusen D, Vinciguerra P, Strahm Y, Stutz F", "reference": { "type": "PubMed", "id": "11390651", "url": "https://pubmed.ncbi.nlm.nih.gov/11390651" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36036-1", "protein_name": "RNA annealing protein YRA2", "gene_name": "YRA2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36036", "url": "https://www.uniprot.org/uniprotkb/P36036" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11390651", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Mol. Biol.", "date": "2009", "authors": "Shukla Abhijit, Durairaj Geetha, Schneider Jessica, Duan Zhen, Shadle Thomas, Bhaumik Sukesh R", "reference": { "type": "PubMed", "id": "19376128", "url": "https://pubmed.ncbi.nlm.nih.gov/19376128" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36036-1", "protein_name": "RNA annealing protein YRA2", "gene_name": "YRA2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P36036", "url": "https://www.uniprot.org/uniprotkb/P36036" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.19376128", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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