[ { "title": "The HsRAD51B-HsRAD51C stabilizes the HsRAD51 nucleoprotein filament.", "journal": "DNA repair", "date": "2013", "authors": "Amunugama R, Groden J, Fishel R", "reference": { "type": "PubMed", "id": "23810717", "url": "https://pubmed.ncbi.nlm.nih.gov/23810717" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6ZVN7-1", "protein_name": "Putative protein SEM1, isoform 2", "gene_name": "SEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92547-1", "protein_name": "DNA topoisomerase 2-binding protein 1", "gene_name": "TOPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06609-1", "protein_name": "DNA repair protein RAD51 homolog 1", "gene_name": "RAD51", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96E14-1", "protein_name": "RecQ-mediated genome instability protein 2", "gene_name": "RMI2", 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"protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "DNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXE1-1", "protein_name": "ATR-interacting protein", "gene_name": "ATRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54132-1", "protein_name": "RecQ-like DNA helicase BLM", "gene_name": "BLM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13535-1", "protein_name": "Serine/threonine-protein kinase ATR", "gene_name": "ATR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14191-1", "protein_name": "Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN", "gene_name": "WRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A7-1", "protein_name": "RecQ-mediated genome instability protein 1", "gene_name": "RMI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35250-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14757-1", "protein_name": "Serine/threonine-protein kinase Chk1", "gene_name": "CHEK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75771-1", "protein_name": "DNA repair protein RAD51 homolog 4", "gene_name": "RAD51D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40938-1", "protein_name": "Replication factor C subunit 3", "gene_name": "RFC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49959-1", "protein_name": "Double-strand break repair protein MRE11", "gene_name": "MRE11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ84-1", "protein_name": "Exonuclease 1", "gene_name": "EXO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99728-1", "protein_name": "BRCA1-associated RING domain protein 1", "gene_name": "BARD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99708-1", "protein_name": "DNA endonuclease RBBP8", "gene_name": "RBBP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX63-1", "protein_name": "Fanconi anemia group J protein", "gene_name": "BRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40937-1", "protein_name": "Replication factor C subunit 5", "gene_name": "RFC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43502-1", "protein_name": "DNA repair protein RAD51 homolog 3", "gene_name": "RAD51C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WBX8-5", "protein_name": "Cell cycle checkpoint control protein RAD9B", "gene_name": "RAD9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92878-1", "protein_name": "DNA repair protein RAD50", "gene_name": "RAD50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51587-1", "protein_name": "Breast cancer type 2 susceptibility protein", "gene_name": "BRCA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60921-1", "protein_name": "Checkpoint protein HUS1", "gene_name": "HUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60671-1", "protein_name": "Cell cycle checkpoint protein RAD1", "gene_name": "RAD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99638-1", "protein_name": "Cell cycle checkpoint control protein RAD9A", "gene_name": "RAD9A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43543-1", "protein_name": "DNA repair protein XRCC2", "gene_name": "XRCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38398-1", "protein_name": "Breast cancer type 1 susceptibility protein", "gene_name": "BRCA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13315-1", "protein_name": "Serine-protein kinase ATM", "gene_name": "ATM", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6ZVN7", "url": "https://www.uniprot.org/uniprotkb/Q6ZVN7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23810717", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A cancer-associated BRCA2 mutation reveals masked nuclear export signals controlling localization.", "journal": "Nature structural & molecular biology", "date": "2013", "authors": "Jeyasekharan AD, Liu Y, Hattori H, Pisupati V, Jonsdottir AB, Rajendra E, Lee M, Sundaramoorthy E, Schlachter S, Kaminski CF, Ofir-Rosenfeld Y, Sato K, Savill J, Ayoub N, Venkitaraman AR", "reference": { "type": "PubMed", "id": "24013206", "url": "https://pubmed.ncbi.nlm.nih.gov/24013206" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6ZVN7-1", "protein_name": "Putative protein SEM1, isoform 2", "gene_name": "SEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92547-1", "protein_name": "DNA topoisomerase 2-binding protein 1", "gene_name": "TOPBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06609-1", "protein_name": "DNA repair protein RAD51 homolog 1", "gene_name": "RAD51", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96E14-1", "protein_name": "RecQ-mediated genome instability protein 2", "gene_name": "RMI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75943-1", "protein_name": "Cell cycle checkpoint protein RAD17", "gene_name": "RAD17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15315-3", "protein_name": "DNA repair protein RAD51 homolog 2", "gene_name": "RAD51B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSD3-1", "protein_name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1", "gene_name": "RHNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35249-1", "protein_name": "Replication factor C subunit 4", "gene_name": "RFC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13472-1", "protein_name": "DNA topoisomerase 3-alpha", "gene_name": "TOP3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60934-1", "protein_name": "Nibrin", "gene_name": "NBN", "tax_name": 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"Human" }, { "uniprot_canonical_ac": "P35250-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14757-1", "protein_name": "Serine/threonine-protein kinase Chk1", "gene_name": "CHEK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75771-1", "protein_name": "DNA repair protein RAD51 homolog 4", "gene_name": "RAD51D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40938-1", "protein_name": "Replication factor C subunit 3", "gene_name": "RFC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49959-1", "protein_name": "Double-strand break repair protein MRE11", "gene_name": "MRE11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ84-1", "protein_name": "Exonuclease 1", "gene_name": "EXO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99728-1", "protein_name": "BRCA1-associated RING domain protein 1", "gene_name": "BARD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99708-1", "protein_name": "DNA endonuclease RBBP8", "gene_name": "RBBP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX63-1", "protein_name": "Fanconi anemia group J protein", "gene_name": "BRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40937-1", "protein_name": "Replication factor C subunit 5", "gene_name": "RFC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43502-1", "protein_name": "DNA repair protein RAD51 homolog 3", "gene_name": "RAD51C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6WBX8-5", "protein_name": "Cell cycle checkpoint control protein RAD9B", "gene_name": "RAD9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92878-1", "protein_name": "DNA repair protein RAD50", "gene_name": "RAD50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51587-1", "protein_name": "Breast cancer type 2 susceptibility 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"Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1030, "end_pos": 1030, "sequence_org": "T", "sequence_mut": "I", "comment": "Unstable and promotes protein degradation; reduces interaction with RAD51C and RAD51.", "evidence": [ { "database": "UniProtKB", "id": "Q86YC2", "url": "https://www.uniprot.org/uniprotkb/Q86YC2" }, { "database": "PubMed", "id": "24141787", "url": "https://pubmed.ncbi.nlm.nih.gov/24141787" } ], "uniprot_canonical_ac": "Q86YC2-1" } ], "record_id": "pubmed.24141787", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06609-1", "protein_name": "DNA repair protein RAD51 homolog 1", "gene_name": "RAD51", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96E14-1", "protein_name": "RecQ-mediated genome instability protein 2", "gene_name": "RMI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU8-1", "protein_name": "DNA polymerase delta subunit 4", "gene_name": "POLD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07864-1", "protein_name": "DNA polymerase epsilon catalytic subunit A", "gene_name": "POLE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR33-1", "protein_name": "DNA polymerase epsilon subunit 4", "gene_name": "POLE4", "tax_name": "Human" }, { "uniprot_canonical_ac": 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}, { "uniprot_canonical_ac": "Q15054-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49005-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75771-1", "protein_name": "DNA repair protein RAD51 homolog 4", "gene_name": "RAD51D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40938-1", "protein_name": "Replication factor C subunit 3", "gene_name": "RFC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49959-1", "protein_name": "Double-strand break repair protein MRE11", "gene_name": "MRE11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ84-1", "protein_name": 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Cell", "date": "2016", "authors": "Trego Kelly S, Groesser Torsten, Davalos Albert R, Parplys Ann C, Zhao Weixing, Nelson Michael R, Hlaing Ayesu, Shih Brian, Rydberg Bj\u00f6rn, Pluth Janice M, Tsai Miaw-Sheue, Hoeijmakers Jan H J, Sung Patrick, Wiese Claudia, Campisi Judith, Cooper Priscilla K", "reference": { "type": "PubMed", "id": "26833090", "url": "https://pubmed.ncbi.nlm.nih.gov/26833090" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6ZVN7-1", "protein_name": "Putative protein SEM1, isoform 2", "gene_name": "SEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06609-1", "protein_name": "DNA repair protein RAD51 homolog 1", "gene_name": "RAD51", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86YC2-1", "protein_name": "Partner and localizer of BRCA2", "gene_name": "PALB2", "tax_name": "Human" }, { 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suppressor PALB2 reveal a novel cancer mechanism using a hidden nuclear export signal in the WD40 repeat motif.", "journal": "Nucleic acids research", "date": "2017", "authors": "Pauty J, Couturier AM, Rodrigue A, Caron MC, Coulombe Y, Dellaire G, Masson JY", "reference": { "type": "PubMed", "id": "28158555", "url": "https://pubmed.ncbi.nlm.nih.gov/28158555" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6ZVN7-1", "protein_name": "Putative protein SEM1, isoform 2", "gene_name": "SEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06609-1", "protein_name": "DNA repair protein RAD51 homolog 1", "gene_name": "RAD51", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96E14-1", "protein_name": "RecQ-mediated genome instability protein 2", "gene_name": "RMI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15315-3", 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Mol. Genet.", "date": "1996", "authors": "Crackower M A, Scherer S W, Rommens J M, Hui C C, Poorkaj P, Soder S, Cobben J M, Hudgins L, Evans J P, Tsui L C", "reference": { "type": "PubMed", "id": "8733122", "url": "https://pubmed.ncbi.nlm.nih.gov/8733122" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6ZVN7-1", "protein_name": "Putative protein SEM1, isoform 2", "gene_name": "SEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60897-1", "protein_name": "26S proteasome complex subunit SEM1", "gene_name": "Sem1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6ZVN7", "url": "https://www.uniprot.org/uniprotkb/Q6ZVN7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8733122", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Macrocytic anemia and mitochondriopathy resulting from a defect in sideroflexin 4.", "journal": "Am. J. Hum. Genet.", "date": "2013", "authors": "Hildick-Smith GJ, Cooney JD, Garone C, Kremer LS, Haack TB, Thon JN, Miyata N, Lieber DS, Calvo SE, Akman HO, Yien YY, Huston NC, Branco DS, Shah DI, Freedman ML, Koehler CM, Italiano JE Jr, Merkenschlager A, Beblo S, Strom TM, Meitinger T, Freisinger P, Donati MA, Prokisch H, Mootha VK, DiMauro S, Paw BH", "reference": { "type": "PubMed", "id": "24119684", "url": "https://pubmed.ncbi.nlm.nih.gov/24119684" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P4A7-1", "protein_name": "Sideroflexin-4", "gene_name": "SFXN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8E7G5-1", "protein_name": "Sideroflexin-4", "gene_name": "sfxn4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6P4A7", "url": "https://www.uniprot.org/uniprotkb/Q6P4A7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sideroflexin 4 affects Fe-S cluster biogenesis, iron metabolism, mitochondrial respiration and heme biosynthetic enzymes.", "journal": "Scientific reports", "date": "2019", "authors": "Paul BT, Tesfay L, Winkler CR, Torti FM, Torti SV", "reference": { "type": "PubMed", "id": "31873120", "url": "https://pubmed.ncbi.nlm.nih.gov/31873120" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P4A7-1", "protein_name": "Sideroflexin-4", "gene_name": "SFXN4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6P4A7", "url": "https://www.uniprot.org/uniprotkb/Q6P4A7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.31873120", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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Commun.", "date": "2020", "authors": "Mochida Keisuke, Yamasaki Akinori, Matoba Kazuaki, Kirisako Hiromi, Noda Nobuo N, Nakatogawa Hitoshi", "reference": { "type": "PubMed", "id": "32620754", "url": "https://pubmed.ncbi.nlm.nih.gov/32620754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99442-1", "protein_name": "Translocation protein SEC62", "gene_name": "SEC62", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95166-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein", "gene_name": "GABARAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99325-1", "protein_name": "Autophagy-related protein 40", "gene_name": "ATG40", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9H6L5-1", "protein_name": "Reticulophagy regulator 1", "gene_name": "RETREG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95197-1", "protein_name": "Reticulon-3", "gene_name": "RTN3", "tax_name": "Human" } ], "species": [ { "name": "Homo 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[] } ] }, { "title": "Sec62 promotes gastric cancer metastasis through mediating UPR-induced autophagy activation.", "journal": "Cellular and molecular life sciences : CMLS", "date": "2022", "authors": "Su S, Shi YT, Chu Y, Jiang MZ, Wu N, Xu B, Zhou H, Lin JC, Jin YR, Li XF, Liang J", "reference": { "type": "PubMed", "id": "35165763", "url": "https://pubmed.ncbi.nlm.nih.gov/35165763" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99442-1", "protein_name": "Translocation protein SEC62", "gene_name": "SEC62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q99442", "url": "https://www.uniprot.org/uniprotkb/Q99442" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35165763", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RIC3 variants are not associated with Parkinson's disease in large European, Latin American, or East Asian cohorts.", "journal": "Neurobiology of aging", "date": "2022", "authors": "Brolin K, Bandres-Ciga S, Leonard H, Makarious MB, Blauwendraat C, Mata IF, Foo JN, Pihlstrom L, Swanberg M, Gan-Or Z, Tan MM", "reference": { "type": "PubMed", "id": "34538707", "url": "https://pubmed.ncbi.nlm.nih.gov/34538707" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7Z5B4-1", "protein_name": "Protein RIC-3", "gene_name": "RIC3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q7Z5B4", "url": "https://www.uniprot.org/uniprotkb/Q7Z5B4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34538707", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Unraveling the molecular interactions between \u03b17 nicotinic receptor and a RIC3 variant associated with backward speech.", "journal": "Cellular and molecular life sciences : CMLS", "date": "2024-03-12", "authors": "Pradhan Aditi, Mounford Hayley, Peixinho Jessica, Rea Edward, Epeslidou Emmanouela, Scott Julia S, Cull Joanna, Maxwell Susan, Webster Richard, Beeson David, Dong Yin Yao, Prekovic Stefan, Bermudez Isabel, Newbury Dianne F", "reference": { "type": "PubMed", "id": "38472514", "url": "https://pubmed.ncbi.nlm.nih.gov/38472514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7Z5B4-1", "protein_name": "Protein RIC-3", "gene_name": "RIC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q494W8-1", "protein_name": "CHRNA7-FAM7A fusion protein", "gene_name": "CHRFAM7A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, 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Poll-The BT, Nurnberg G, Becker C, van Ruissen F, Weterman MA, Fluiter K, te Beek ET, Aronica E, van der Knaap MS, Hohne W, Toliat MR, Crow YJ, Steinling M, Voit T, Roelenso F, Brussel W, Brockmann K, Kyllerman M, Boltshauser E, Hammersen G, Willemsen M, Basel-Vanagaite L, Krageloh-Mann I, de Vries LS, Sztriha L, Muntoni F, Ferrie CD, Battini R, Hennekam RC, Grillo E, Beemer FA, Stoets LM, Wollnik B, Nurnberg P, Baas F", "reference": { "type": "PubMed", "id": "18711368", "url": "https://pubmed.ncbi.nlm.nih.gov/18711368" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NCE0-1", "protein_name": "tRNA-splicing endonuclease subunit Sen2", "gene_name": "TSEN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSV6-1", "protein_name": "tRNA-splicing endonuclease subunit Sen34", "gene_name": "TSEN34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6J9-1", "protein_name": "tRNA-splicing endonuclease subunit Sen54", "gene_name": "TSEN54", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NCE0", "url": "https://www.uniprot.org/uniprotkb/Q8NCE0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18711368", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A splice site mutation in the TSEN2 causes a new syndrome with craniofacial and central nervous system malformations, and atypical hemolytic uremic syndrome.", "journal": "Clinical genetics", "date": "2022", "authors": "Canpolat N, Liu D, Atayar E, Saygili S, Kara NS, Westfall TA, Ding Q, Brown BJ, Braun TA, Slusarski D, Karli Oguz K, Ozluk Y, Tuysuz B, Tastemel Ozturk T, Sever L, Sezerman OU, Topaloglu R, Caliskan S, Attanasio M, Ozaltin F", "reference": { "type": "PubMed", "id": "34964109", "url": "https://pubmed.ncbi.nlm.nih.gov/34964109" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NCE0-1", "protein_name": "tRNA-splicing endonuclease subunit Sen2", "gene_name": "TSEN2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NCE0", "url": "https://www.uniprot.org/uniprotkb/Q8NCE0" } ], "common_name": 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gene nomenclature.", "journal": "J. Biol. Chem.", "date": "2016", "authors": "Gladyshev Vadim N, Arn\u00e9r Elias S, Berry Marla J, Brigelius-Floh\u00e9 Regina, Bruford Elspeth A, Burk Raymond F, Carlson Bradley A, Castellano Sergi, Chavatte Laurent, Conrad Marcus, Copeland Paul R, Diamond Alan M, Driscoll Donna M, Ferreiro Ana, Floh\u00e9 Leopold, Green Fiona R, Guig\u00f3 Roderic, Handy Diane E, Hatfield Dolph L, Hesketh John, Hoffmann Peter R, Holmgren Arne, Hondal Robert J, Howard Michael T, Huang Kaixun, Kim Hwa-Young, Kim Ick Young, K\u00f6hrle Josef, Krol Alain, Kryukov Gregory V, Lee Byeong Jae, Lee Byung Cheon, Lei Xin Gen, Liu Qiong, Lescure Alain, Lobanov Alexei V, Loscalzo Joseph, Maiorino Matilde, Mariotti Marco, Sandeep Prabhu K, Rayman Margaret P, Rozovsky Sharon, Salinas Gustavo, Schmidt Edward E, Schomburg Lutz, Schweizer Ulrich, Simonovi\u0107 Miljan, Sunde Roger A, Tsuji Petra A, Tweedie Susan, Ursini Fulvio, Whanger Philip D, Zhang Yan", "reference": { "type": "PubMed", "id": "27645994", "url": "https://pubmed.ncbi.nlm.nih.gov/27645994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49908-1", "protein_name": "Selenoprotein P", "gene_name": "SELENOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63302-1", "protein_name": "Selenoprotein W", "gene_name": "SELENOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE4-1", "protein_name": "Selenoprotein S", "gene_name": "SELENOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59797-1", "protein_name": "Selenoprotein V", "gene_name": "SELENOV", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q802G7-1", "protein_name": "Selenoprotein M", "gene_name": "Selenom; selenom", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8WWX9-1", "protein_name": "Selenoprotein M", "gene_name": "SELENOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60613-1", "protein_name": "Selenoprotein F", "gene_name": "SELENOF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6D0-1", 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Acta", "date": "1994", "authors": "Akesson B, Bellew T, Burk RF", "reference": { "type": "PubMed", "id": "8142465", "url": "https://pubmed.ncbi.nlm.nih.gov/8142465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49908-1", "protein_name": "Selenoprotein P", "gene_name": "SELENOP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P49908", "url": "https://www.uniprot.org/uniprotkb/P49908" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8142465", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conserved nucleotide sequences in the open reading frame and 3' untranslated region of selenoprotein P mRNA.", "journal": "Proc. 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"P09038-4", "protein_name": "Fibroblast growth factor 2", "gene_name": "FGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16671-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "CD36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48023-1", "protein_name": "Tumor necrosis factor ligand superfamily member 6", "gene_name": "FASLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13500-1", "protein_name": "C-C motif chemokine 2", "gene_name": "CCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18428-1", "protein_name": "Lipopolysaccharide-binding protein", "gene_name": "LBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16050-1", "protein_name": "Polyunsaturated fatty acid lipoxygenase ALOX15", "gene_name": "ALOX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52333-1", "protein_name": "Tyrosine-protein kinase JAK3", "gene_name": "JAK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01861-2", "protein_name": "Immunoglobulin heavy constant gamma 4", "gene_name": "IGHG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14116-1", "protein_name": "Interleukin-18", "gene_name": "IL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16552-1", "protein_name": "Interleukin-17A", "gene_name": "IL17A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16658-1", "protein_name": "Fascin", "gene_name": "FSCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07820-1", "protein_name": "Induced myeloid leukemia cell differentiation protein Mcl-1", "gene_name": "MCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41182-1", "protein_name": "B-cell lymphoma 6 protein", "gene_name": "BCL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10145-1", "protein_name": "Interleukin-8", "gene_name": "CXCL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35228-1", "protein_name": "Nitric oxide synthase, inducible", "gene_name": "NOS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35398-2", "protein_name": "Nuclear receptor ROR-alpha", "gene_name": "RORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37275-1", "protein_name": "Zinc finger E-box-binding homeobox 1", "gene_name": "ZEB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14210-1", "protein_name": "Hepatocyte growth factor", "gene_name": "HGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35372-1", "protein_name": "Mu-type opioid receptor", "gene_name": "OPRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40763-1", "protein_name": "Signal transducer and activator of transcription 3", "gene_name": "STAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15672-1", "protein_name": "Twist-related protein 1", "gene_name": "TWIST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22301-1", "protein_name": "Interleukin-10", "gene_name": "IL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14627-1", "protein_name": "Interleukin-13 receptor subunit alpha-2", "gene_name": "IL13RA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51449-1", "protein_name": "Nuclear receptor ROR-gamma", "gene_name": "RORC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01375-1", "protein_name": "Tumor necrosis factor", "gene_name": "TNF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80188-1", "protein_name": "Neutrophil gelatinase-associated lipocalin", "gene_name": "LCN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15692-13", "protein_name": "Vascular endothelial growth factor A, long form", "gene_name": "VEGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38936-1", "protein_name": "Cyclin-dependent kinase inhibitor 1", "gene_name": "CDKN1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00626-1", "protein_name": "C-C motif chemokine 22", "gene_name": "CCL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51671-1", "protein_name": "Eotaxin", "gene_name": "CCL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09917-1", "protein_name": "Polyunsaturated fatty acid 5-lipoxygenase", "gene_name": "ALOX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42224-1", "protein_name": "Signal transducer and activator of transcription 1-alpha/beta", "gene_name": "STAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42226-1", "protein_name": "Signal transducer and activator of transcription 6", "gene_name": "STAT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29459-1", "protein_name": "Interleukin-12 subunit alpha", "gene_name": "IL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01854-2", "protein_name": "Immunoglobulin heavy constant epsilon", "gene_name": "IGHE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35225-1", "protein_name": "Interleukin-13", "gene_name": "IL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05112-1", "protein_name": "Interleukin-4", "gene_name": "IL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L0Q8-1", "protein_name": "Rho-related GTP-binding protein RhoU", "gene_name": "RHOU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78552-1", "protein_name": "Interleukin-13 receptor subunit alpha-1", "gene_name": "IL13RA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75159-1", "protein_name": "Suppressor of cytokine signaling 5", "gene_name": "SOCS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S0-1", "protein_name": "Homeobox protein NANOG", "gene_name": "NANOG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01857-2", "protein_name": "Immunoglobulin heavy constant gamma 1", "gene_name": "IGHG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00488-1", "protein_name": "Coagulation factor XIII A chain", "gene_name": "F13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14625-1", "protein_name": "Endoplasmin", "gene_name": "HSP90B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27986-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit alpha", "gene_name": "PIK3R1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15941-1", "protein_name": "Mucin-1", "gene_name": "MUC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P0DJI8", "url": "https://www.uniprot.org/uniprotkb/P0DJI8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10023775", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 111 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]