[ { "uniprot_canonical_ac": "A0A8C2M3J2-1", "uniprot_ac": "A0A8C2M3J2", "uniprot_id": "A0A8C2M3J2_CRIGR", "mass": { "chemical_mass": 9716.0, "monoisotopic_mass": 9716.0 }, "refseq": { "ac": "XP_035306764", "name": "small integral membrane protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306764" }, "gene_names": [ { "name": "Smim4", "type": "recommended", "evidence": [ { "id": "A0A8C2M3J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2" } ] }, { "name": "Smim4", "type": "synonym", "evidence": [ { "id": "XP_035306764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306764" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 4", "type": "synonym", "evidence": [ { "id": "A0A8C2M3J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 4", "type": "synonym", "evidence": [ { "id": "XP_035306764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306764" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613589.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306764" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smim4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2", "locus": {} } ], "crossref": [ { "id": "100763344", "url": "https://www.ncbi.nlm.nih.gov/gene/100763344", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028183", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028183", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763344", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763344", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MEWFMIK", "url": "https://omabrowser.org/oma/group/MEWFMIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M3J2", "url": "https://www.orthodb.org/?gene=A0A8C2M3J2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35250", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35250", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35250:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35250:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15114", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15114", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306764", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M3J2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M3J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSRAQVRRALQWVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKASERQYQRRLEDTSETHLHKIK", "length": 79, "header": "tr|A0A8C2M3J2-1|A0A8C2M3J2_CRIGR Isoform 1 of Small integral membrane protein 4 OS=Cricetulus griseus OX=10029 GN=Smim4 PE=4 SV=1 CANONICAL=A0A8C2M3J2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2/entry", "sequence": { "sequence": "MFSRAQVRRALQWVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKASERQYQRRLEDTSETHLHKIK", "length": 79, "header": "tr|A0A8C2M3J2-1|A0A8C2M3J2_CRIGR Isoform 1 of Small integral membrane protein 4 OS=Cricetulus griseus OX=10029 GN=Smim4 PE=4 SV=1 CANONICAL=A0A8C2M3J2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763344", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763344", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P063-1", "protein_name": "Small integral membrane protein 4", "gene_name": "SMIM4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLVSRRLKRLLRLVPGRERLGAYRLLPFFFVLGGAMEWFMINVRIGKETFYDVYRRKRSERQYEARMEKSES", "length": 72 }, "evidence": [ { "id": "A0A8C2M3J2", "url": "https://omabrowser.org/oma/group/A0A8C2M3J2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8D1R6M1-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "UQCC5", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSRAQVRRVLQRVPGKQRLGVYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKASERQYQRRLEDASETELQQSIK", "length": 80 }, "evidence": [ { "id": "A0A8C2M3J2", "url": "https://omabrowser.org/oma/group/A0A8C2M3J2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "A0A8C2M3J2", "url": "https://omabrowser.org/oma/group/A0A8C2M3J2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8WVI0-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly 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"evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"monoisotopic_mass": 92307.0 }, "refseq": { "ac": "XP_027277225", "name": "zinc finger protein 341 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277225" }, "gene_names": [ { "name": "Znf341", "type": "recommended", "evidence": [ { "id": "A0A8C2M3J3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ] }, { "name": "Znf341", "type": "synonym", "evidence": [ { "id": "XP_027277225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277225" } ] } ], "protein_names": [ { "name": "Zinc finger protein 341 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2M3J3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 341 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027277225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277225" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277225", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277225" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf341", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3", "locus": {} } ], "crossref": [ { "id": "100759133", "url": "https://www.ncbi.nlm.nih.gov/gene/100759133", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759133", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759133", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M3J3", "url": "https://www.orthodb.org/?gene=A0A8C2M3J3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": 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"MAQAIFEALEGMDNQTVLAVQSLLDGQGAVPDPTGQSVSAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGNAPALATVSLATNSIYTPSAAPATVQQAPPPANRQISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQNSLNMHPVPNYLTQPPPPPPPPPPLPPPPQPPPPPPQTLGPSGRSNPVGNSVVEVYSAAAPMAGNGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPPVYSPGKQEFKTKGPSSTAPMTSATGSTVATFDSPPTLKTRRAKGASGLPEATGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTISRNSVTVQVMALNPSRQEEEDTGLGQTLSSTTQPQALPTAGEDEGGKPEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMIQHKKEQVYKCVVRSCAQMFPKLDTFLEHIRSHQEELSYRCHLCSKDFPSLYDLGVHQYSHSLLPQHSPKKDSTVYKCVKCVNKYSTPEALEHHVQTATHSFPCPHCQKVFPCERYLRRHLPTHGSGGRFRCQICKKFFRKEHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPFSMHTGCSKEFNRQDKLKAHILSHAGLKLHKCGLCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPTKDKDLQARRPSRRRAAPRGGGSIVGVHKEESPVPDPLGLEELKAAGPAPEAAPGKPPFEQDAVLSIVVGGDPELVVPGHTEGLGSNLALAELQAGAEGACAMLAVPVYIQASE", "length": 846, "header": "tr|A0A8C2M3J3-1|A0A8C2M3J3_CRIGR Isoform 1 of Zinc finger protein 341 isoform X3 OS=Cricetulus griseus OX=10029 GN=Znf341 PE=4 SV=1 CANONICAL=A0A8C2M3J3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3/entry", "sequence": { "sequence": "MAQAIFEALEGMDNQTVLAVQSLLDGQGAVPDPTGQSVSAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGNAPALATVSLATNSIYTPSAAPATVQQAPPPANRQISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQNSLNMHPVPNYLTQPPPPPPPPPPLPPPPQPPPPPPQTLGPSGRSNPVGNSVVEVYSAAAPMAGNGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPPVYSPGKQEFKTKGPSSTAPMTSATGSTVATFDSPPTLKTRRAKGASGLPEATGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTISRNSVTVQVMALNPSRQEEEDTGLGQTLSSTTQPQALPTAGEDEGGKPEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMIQHKKEQVYKCVVRSCAQMFPKLDTFLEHIRSHQEELSYRCHLCSKDFPSLYDLGVHQYSHSLLPQHSPKKDSTVYKCVKCVNKYSTPEALEHHVQTATHSFPCPHCQKVFPCERYLRRHLPTHGSGGRFRCQICKKFFRKEHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPFSMHTGCSKEFNRQDKLKAHILSHAGLKLHKCGLCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPTKDKDLQARRPSRRRAAPRGGGSIVGVHKEESPVPDPLGLEELKAAGPAPEAAPGKPPFEQDAVLSIVVGGDPELVVPGHTEGLGSNLALAELQAGAEGACAMLAVPVYIQASE", "length": 846, "header": "tr|A0A8C2M3J3-1|A0A8C2M3J3_CRIGR Isoform 1 of Zinc finger protein 341 isoform X3 OS=Cricetulus griseus OX=10029 GN=Znf341 PE=4 SV=1 CANONICAL=A0A8C2M3J3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G695-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G695/entry", "sequence": { "sequence": "MAQAIFEALEGMDNQTVLAVQSLLDGQGAVPDPTGQSVSAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGNAPALATVSLATNSIYTPSAAPATVQQAPPPANRQISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQNSLNMHPVPNYLTQPPPPPPPPPPLPPPPQPPPPPPQTLGPSGRSNPVGNSVVEVYSAAAPMAGNGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPPVYSPGKQEFKTKGPSSTAPMTSATGSTVATFDSPPTLKTRRAKATGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTISRNSVTVQVMALNPSRQEEEDTGLGQTLSSTTQPQALPTAGEDEGGKPEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMIQHKKEQVYKCVVRSCAQMFPKLDTFLEHIRSHQEELSYRCHLCSKDFPSLYDLGVHQYSHSLLPQHSPKKDSTVYKCVKCVNKYSTPEALEHHVQTATHSFPCPHCQKVFPCERYLRRHLPTHGSGGRFRCQICKKFFRKEHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPFSMHTGCSKEFNRQDKLKAHILSHAGLKLHKCGLCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPTKDKDLQARRPSRRRAAPRGGGSIVGVHKEESPVPDPLGLEELKAAGPAPEAAPGKPPFEQDAVLSIVVGGDPELVVPGHTEGLGSNLALAELQAGAEGACAMLAVPVYIQASE", "length": 839, "header": "tr|A0A9J7G695-1|A0A9J7G695_CRIGR Computationally mapped isoform of Zinc finger protein 341 isoform X4 OS=Cricetulus griseus OX=10029 GN=Znf341 PE=4 SV=1 CANONICAL=A0A8C2M3J3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLG2/entry", "sequence": { "sequence": "MAKGQSLTQQDRVSVHRLPSSHWISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQNSLNMHPVPNYLTQPPPPPPPPPPLPPPPQPPPPPPQTLGPSGRSNPVGNSVVEVYSAAAPMAGNGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPPVYSPGKQEFKTKGPSSTAPMTSATGSTVATFDSPPTLKTRRAKGASGLPEATGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTISRNSVTVQVMALNPSRQEEEDTGLGQTLSSTTQPQALPTAGEDEGGKPEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMIQHKKEQVYKCVVRSCAQMFPKLDTFLEHIRSHQEELSYRCHLCSKDFPSLYDLGVHQYSHSLLPQHSPKKDSTVYKCVKCVNKYSTPEALEHHVQTATHSFPCPHCQKVFPCERYLRRHLPTHGSGGRFRCQICKKFFRKEHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPFSMHTGCSKEFNRQDKLKAHILSHAGLKLHKCGLCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPTKDKDLQARRPSRRRAAPRGGGSIVGVHKEESPVPDPLGLEELKAAGPAPEAAPGKPPFEQDAVLSIVVGGDPELVVPGHTEGLGSNLALAELQAGAEGACAMLAVPVYIQASE", "length": 756, "header": "tr|A0A9J7JLG2-1|A0A9J7JLG2_CRIGR Computationally mapped isoform of Zinc finger protein 341 isoform X5 OS=Cricetulus griseus OX=10029 GN=Znf341 PE=4 SV=1 CANONICAL=A0A8C2M3J3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 258, "start_aa": "Thr", "end_pos": 258, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr258", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759133", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759133", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity", "id": "GO:0001216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001216", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M3J3", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M3J6-1", "uniprot_ac": "A0A8C2M3J6", "uniprot_id": "A0A8C2M3J6_CRIGR", "mass": { "chemical_mass": 49601.0, "monoisotopic_mass": 49601.0 }, "refseq": { "ac": "XP_007609642", "name": "armadillo-like helical domain containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007609642" }, "gene_names": [ { "name": "Armh1", "type": "recommended", "evidence": [ { "id": "A0A8C2M3J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6" } ] }, { "name": "Armh1", "type": "synonym", "evidence": [ { "id": "XP_007609642", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007609642" } ] } ], "protein_names": [ { "name": "Armadillo-like helical domain containing protein 1", "type": "synonym", "evidence": [ { "id": "A0A8C2M3J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6/entry#names_and_taxonomy" } ] }, { "name": "armadillo-like helical domain containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_007609642", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007609642" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613647.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007609642", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007609642" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Armh1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6", "locus": {} } ], "crossref": [ { "id": "100755338", "url": "https://www.ncbi.nlm.nih.gov/gene/100755338", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041090", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041090", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755338", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755338", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETICECY", "url": "https://omabrowser.org/oma/group/ETICECY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M3J6", "url": "https://www.orthodb.org/?gene=A0A8C2M3J6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34258", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34258", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34258:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34258:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17741", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17741", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007609642", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007609642", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M3J6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M3J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSIKEQAAISRLLSFLQEWDNASRNLRSQILTKFIDSNEGKTGPELEQEFSQGASLFLIRLTTWLRITYMTGLDLEKILRSIGIFLSAVSSNRYLIEFLEIGGVLTLLEILGLEKIKEEDKRESVKLLQIIASTGRKYKELICESYGVRSIAEFLAKSQSEETQEEVQILLDTLLHGNPKYQNQVYKGLIALLPCGSPKAQQLALQTLRTAQSIIGATHPSIVDCVLTVLGTMHLEVQYEAIELIKDLIHYDVRLPLLKGLVALLIPSVKETSKLQANIFTESSILQVTTQLPVFLKQAAAAKTIGILARSDLKVAEELLYLRVIHSLMTAMGNTDHSNSQRLASLTLEFFVQMFPLVEEHVHKSMGEELYQLFLSNAEILYAKMDSIQADILAANKVNVSKALCLCEGTTNSCFSFFMGPGDVNEVEYVTHFEKHQPESKE", "length": 443, "header": "tr|A0A8C2M3J6-1|A0A8C2M3J6_CRIGR Isoform 1 of Armadillo-like helical domain containing protein 1 OS=Cricetulus griseus OX=10029 GN=Armh1 PE=4 SV=1 CANONICAL=A0A8C2M3J6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6/entry", "sequence": { "sequence": "MTSIKEQAAISRLLSFLQEWDNASRNLRSQILTKFIDSNEGKTGPELEQEFSQGASLFLIRLTTWLRITYMTGLDLEKILRSIGIFLSAVSSNRYLIEFLEIGGVLTLLEILGLEKIKEEDKRESVKLLQIIASTGRKYKELICESYGVRSIAEFLAKSQSEETQEEVQILLDTLLHGNPKYQNQVYKGLIALLPCGSPKAQQLALQTLRTAQSIIGATHPSIVDCVLTVLGTMHLEVQYEAIELIKDLIHYDVRLPLLKGLVALLIPSVKETSKLQANIFTESSILQVTTQLPVFLKQAAAAKTIGILARSDLKVAEELLYLRVIHSLMTAMGNTDHSNSQRLASLTLEFFVQMFPLVEEHVHKSMGEELYQLFLSNAEILYAKMDSIQADILAANKVNVSKALCLCEGTTNSCFSFFMGPGDVNEVEYVTHFEKHQPESKE", "length": 443, "header": "tr|A0A8C2M3J6-1|A0A8C2M3J6_CRIGR Isoform 1 of Armadillo-like helical domain containing protein 1 OS=Cricetulus griseus OX=10029 GN=Armh1 PE=4 SV=1 CANONICAL=A0A8C2M3J6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755338", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755338", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BS81-1", "protein_name": "Armadillo like helical domain containing 1", "gene_name": "ARMH1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTSIKEQAAISRLLSFLQDWDNAGRVARSHILHNFIDSNQGKTAPELEQEFSQGASLFLARLTTWLRLTYMTGSCLEKLLRSIGVFLSAVSSNRYLIEFLEVGGVLTLLEILALEKIKEEDKKESVKLLQVIANSGRKYKELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLVHGNPKYQNQVYKGLIALLPCASPKAQQLSLQTLRTAQSIVGTTHPSIVDGVLKVLRTMHLEVQYEAIELIKDLVNYDVCPALLKGLVALLIPSFKETSKLQPKIVDESSVLQLTGHLPLFLQQAAAAKAIGILARRNTSLAEEMLHLRVVHSLLAAMGNTDHSNSQRQASLTLEYFVQLFPVVEEHVRRSMGEELYRLFLSDAEDLYRKMDSIQADILAANKVNVTKALYLSGLSPAT", "length": 414 }, "evidence": [ { "id": "A0A8C2M3J6", "url": "https://omabrowser.org/oma/group/A0A8C2M3J6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A7MBF6-1", "protein_name": "Armadillo-like helical domain containing protein 1", "gene_name": "ARMH1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSIKEQAAISRLLSFLQDWDNAGKVARSNILNNFIEANQGKTAPELEQEFSQGASLFLVRLTTWLRLTYMTGSPLDKLLRSIGVFLSAVSSNRYLIEFLEVGGVLTLLEILALNKIKEEDKKESIKLLQVIANSGRKYKELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLIHGNPKYQNQVYKGLIALLPCASPKAQQLALQTLRTAQSIIGTTHPSIVDCVLKVLCTMHLEVQYEAIELIKDLVNYDVCPALLKGLVALLIPSFKETSKLQSQIVSDSSVLELTAHLPLFLQQAAAAKAIGVLARHNTTLAEEMLHLRVIHSLMAAMGNTDHSNSQRQASLTLEYFVQLFPVVEEHVRKTMGEELYKLFLSNAENLYMNIDSIQADILAANKVNVTRVLHLSGLSYSNMSFYFGHPNEDQVAYVTHFRKEDVEEKE", "length": 442 }, "evidence": [ { "id": "A0A8C2M3J6", "url": "https://omabrowser.org/oma/group/A0A8C2M3J6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A9P2-1", "protein_name": "Armadillo-like helical domain containing 1", "gene_name": "Armh1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSIKEQAAISRLLSFLQEWDNAGKSLRTQILTTFIETNQGKTGPELELEFSQGASLFLIRVTTWLRIIYMTGLDLEMILRSIGIFLSAVSSNRYLIEFLEIGGVLTLLEILGLEKIKEEDKKESIKLLQIIANTGRKYKELICESYGVRAIAEFLAKSKSEETQEEVQVLLDTLVHGNPKYQNQVYKGLIALLPCGSPKAQQLALQTLKTAQSIVGATHPSIVDCVLMVLSTVHLEVQYEAIELIKDLIHYDVRLPLLKGLIAMLIPPVKETSKLQARIFSDSSILQITTQLPVFLQQAAAAKTIGILARSDLNLAEEMLHLRVIHSLMSAMGNTDHSNSQRLASLTLEYFVQMFPLVEEHVRNSMGEELYQLFLSDAEILYTKIDSIQADILAANKVNVTRDSCDHINNSCISFSTSSDASNQVGGISDFEKLHSESRE", "length": 441 }, "evidence": [ { "id": "A0A8C2M3J6", "url": "https://omabrowser.org/oma/group/A0A8C2M3J6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q963-1", "protein_name": "Armadillo-like helical domain containing 1", "gene_name": "Armh1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSVKEQAAISRLLSFLQEWDNAGKGLRNQILTTFIKTNEGKTGPELELEFSQGASLFLIRVTTWLRIIYMTGLELEKILRSIGIFLSAVSSNRYLLEFLEIGGVLTLLEILGVEKINEEDKKESIKLLQIIANTGRKYKELICESYGVRAIAEFLAKSKSEETQEEVQVLLETLVHGNPKYQNQVYKGLIALLPCESPKAQRLALQTLKTAQSIVGATHPSIVDRVLTVLSTVHLEVQYEAIELIKDLIHYDVRLPLLKGLVALLMPPVKETSKLQAKIFSDSSILQTTTQLPVFLQQAAAAKTIGILARNDLNLAVELLNLRVVHGLMSAMGNTDHSNSQRLASLTLEYFVQMFPLVEEQVRKSMGDELYQLFLNDAEILYTKIDSIQADILAANKVNATTDSCECIDNSSISFSTGSNDMNQRGYTNDFEKLHSKSKE", "length": 441 }, "evidence": [ { "id": "A0A8C2M3J6", "url": "https://omabrowser.org/oma/group/A0A8C2M3J6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PIY5-1", "protein_name": "Armadillo-like helical domain containing protein 1", "gene_name": "ARMH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSIKEQAAISRLLSFLQEWDNAGKVARSHILDKFIETNQGKTAPELEQEFSQGASLFLVRLTTSLRITYMTDSCLEKLLRSIGIFLSAVSSNRYLIEFLEVGGVLTLLEILGLEKIKEEAKKESVKLLQVIANSGRTYKELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLVHGNPKYQNQVYKGLIALLPCESPKAQQLSLQTLRTAQPIIGTTHPSIVDCVLKVLGTMHLEVQYEAIELIKDLVGYDVRQALLKGLVALLIPSVKEISKLQAKILSDPSVLQLTPSLPMFLQQAAAAKAIGVLARNDMSIAEELLYLRVVRGLMAAMGNTDHSNSQRLASLTLECFVQMFPLVAEHVRKCMGEELYQLFLSNAEDLYMKIDSIQADILAANTVNVTKALCLHGSSYSMNTLYGSRDSAQMAYLTHFEEDVESKE", "length": 440 }, "evidence": [ { "id": "A0A8C2M3J6", "url": "https://omabrowser.org/oma/group/A0A8C2M3J6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3J6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3J6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 }, { "start_pos": 400, "end_pos": 402 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M3K6-1", "uniprot_ac": "A0A8C2M3K6", "uniprot_id": "A0A8C2M3K6_CRIGR", "mass": { "chemical_mass": 14903.0, "monoisotopic_mass": 14903.0 }, "refseq": { "ac": "XP_016835743", "name": "odontogenesis associated phosphoprotein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835743" }, "gene_names": [ { "name": "Odaph", "type": "recommended", "evidence": [ { "id": "A0A8C2M3K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3K6" } ] }, { "name": "Odaph", "type": "synonym", "evidence": [ { "id": "XP_016835743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835743" } ] } ], "protein_names": [ { "name": "Odontogenesis associated phosphoprotein", "type": "synonym", "evidence": [ { "id": "A0A8C2M3K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3K6/entry#names_and_taxonomy" } ] }, { "name": "odontogenesis associated phosphoprotein", "type": "synonym", "evidence": [ { "id": "XP_016835743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835743" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615177.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016835743", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835743" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3K6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3K6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Odaph", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3K6", "locus": {} } ], "crossref": [ { "id": "100755317", "url": "https://www.ncbi.nlm.nih.gov/gene/100755317", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031706", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031706", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755317", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755317", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M3K6", "url": "https://www.orthodb.org/?gene=A0A8C2M3K6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40376", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40376", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40376:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40376:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15848", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15848", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016835743", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835743", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M3K6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3K6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M3K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3K6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPGFLFWVLVGWSVLTMAEGQDVVTPPGGSQDNVTPTDCQIFTLTPPPPTRKPAVTRAQPNTRIFPWTWFHFLPRRPGFYWPPNRPLLLPNYNPGFQFHPFYLPQGRLSGRYFLRGQLQGGSSSEESIEK", "length": 131, "header": "tr|A0A8C2M3K6-1|A0A8C2M3K6_CRIGR Isoform 1 of Odontogenesis associated phosphoprotein OS=Cricetulus griseus OX=10029 GN=Odaph PE=4 SV=1 CANONICAL=A0A8C2M3K6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3K6/entry", "sequence": { "sequence": "MAPGFLFWVLVGWSVLTMAEGQDVVTPPGGSQDNVTPTDCQIFTLTPPPPTRKPAVTRAQPNTRIFPWTWFHFLPRRPGFYWPPNRPLLLPNYNPGFQFHPFYLPQGRLSGRYFLRGQLQGGSSSEESIEK", "length": 131, "header": "tr|A0A8C2M3K6-1|A0A8C2M3K6_CRIGR Isoform 1 of Odontogenesis associated phosphoprotein OS=Cricetulus griseus OX=10029 GN=Odaph PE=4 SV=1 CANONICAL=A0A8C2M3K6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613650.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007611116", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007611116" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3P7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ly86", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3P7", "locus": {} } ], "crossref": [ { "id": "100765204", "url": "https://www.ncbi.nlm.nih.gov/gene/100765204", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765204", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765204", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NYSYPIC", "url": "https://omabrowser.org/oma/group/NYSYPIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M3P7", "url": "https://www.orthodb.org/?gene=A0A8C2M3P7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20838", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20838", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20838:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20838:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007611116", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007611116", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M3P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M3P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3P7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSVAAALLVWILTSPSSDRGDAWPTHMACSSGGLEVLYQSCDPLQDFGLSIDQCSKQIPQQLNIRFGIILREDIRELFLDIALISRGSSILNFSYPICEEDLPKFSFCGRRKGEQIYYAGPVNNLGFDVPQGEYQVLLELYNENRATVACANATVISF", "length": 159, "header": "tr|A0A8C2M3P7-1|A0A8C2M3P7_CRIGR Isoform 1 of Lymphocyte antigen 86 OS=Cricetulus griseus OX=10029 GN=Ly86 PE=4 SV=1 CANONICAL=A0A8C2M3P7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3P7/entry", "sequence": { "sequence": "MNSVAAALLVWILTSPSSDRGDAWPTHMACSSGGLEVLYQSCDPLQDFGLSIDQCSKQIPQQLNIRFGIILREDIRELFLDIALISRGSSILNFSYPICEEDLPKFSFCGRRKGEQIYYAGPVNNLGFDVPQGEYQVLLELYNENRATVACANATVISF", "length": 159, "header": "tr|A0A8C2M3P7-1|A0A8C2M3P7_CRIGR Isoform 1 of Lymphocyte antigen 86 OS=Cricetulus griseus OX=10029 GN=Ly86 PE=4 SV=1 CANONICAL=A0A8C2M3P7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003615251.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007650566", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650566" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3Q1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Q1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rbp7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Q1", "locus": {} } ], "crossref": [ { "id": "cd19465", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19465", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103158563", "url": "https://www.ncbi.nlm.nih.gov/gene/103158563", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000463", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000463", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103158563", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103158563", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YFVQFKI", "url": "https://omabrowser.org/oma/group/YFVQFKI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M3Q1", "url": "https://www.orthodb.org/?gene=A0A8C2M3Q1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11955", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11955", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007650566", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650566", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M3Q1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M3Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Q1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPADLSGTWNLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTYSSLRNYLVIFKVGEEFEEDNKGLDNRKCMSLVTWENDRLTCVQKGEKKNRGWSHWIEGDQLHLEMFCEGQVCKQTFQRA", "length": 134, "header": "tr|A0A8C2M3Q1-1|A0A8C2M3Q1_CRIGR Isoform 1 of Retinoid-binding protein 7 OS=Cricetulus griseus OX=10029 GN=Rbp7 PE=3 SV=1 CANONICAL=A0A8C2M3Q1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Q1/entry", "sequence": { "sequence": "MPADLSGTWNLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTYSSLRNYLVIFKVGEEFEEDNKGLDNRKCMSLVTWENDRLTCVQKGEKKNRGWSHWIEGDQLHLEMFCEGQVCKQTFQRA", "length": 134, "header": "tr|A0A8C2M3Q1-1|A0A8C2M3Q1_CRIGR Isoform 1 of Retinoid-binding protein 7 OS=Cricetulus griseus OX=10029 GN=Rbp7 PE=3 SV=1 CANONICAL=A0A8C2M3Q1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "retinoid binding", "id": "GO:0005501", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005501", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3Q1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Q1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M3Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Q1" }, { "id": "PS00214", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00214" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cytosolic fatty-acid binding proteins", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 24, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": 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Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035299758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299758" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3U5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata19", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5", "locus": {} } ], "crossref": [ { "id": "100752873", "url": "https://www.ncbi.nlm.nih.gov/gene/100752873", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752873", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752873", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EHWLKKT", "url": "https://omabrowser.org/oma/group/EHWLKKT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M3U5", "url": "https://www.orthodb.org/?gene=A0A8C2M3U5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36468", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36468", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36468:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36468:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15212", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15212", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035299758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299758", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M3U5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M3U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIITTWIVYIFTRKTIGLPFPPNTNSDIEVVESEAVSVVQHWLNKTEEEASRSIKEKMSNNAPSCHGHDVHVTRDLVKHHLSKSDMSVEPNQELLEERTRIQFIRWSHTRIFQVPSEMIEDVMQERIDQVRRSISHLTCDSYDDPSFRTSCSEC", "length": 154, "header": "tr|A0A8C2M3U5-1|A0A8C2M3U5_CRIGR Isoform 1 of Spermatogenesis-associated protein 19, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata19 PE=4 SV=1 CANONICAL=A0A8C2M3U5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5/entry", "sequence": { "sequence": "MIITTWIVYIFTRKTIGLPFPPNTNSDIEVVESEAVSVVQHWLNKTEEEASRSIKEKMSNNAPSCHGHDVHVTRDLVKHHLSKSDMSVEPNQELLEERTRIQFIRWSHTRIFQVPSEMIEDVMQERIDQVRRSISHLTCDSYDDPSFRTSCSEC", "length": 154, "header": "tr|A0A8C2M3U5-1|A0A8C2M3U5_CRIGR Isoform 1 of Spermatogenesis-associated protein 19, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata19 PE=4 SV=1 CANONICAL=A0A8C2M3U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYZ3/entry", "sequence": { "sequence": "MSERMWGFVLTEEEASRSIKEKMSNNAPSCHGHDVHVTRDLVKHHLSKSDMSVEPNQELLEERTRIQFIRWSHTRIFQVPSEMIEDVMQERIDQVRRSISHLTCDSYDDPSFRTSCSEC", "length": 119, "header": "tr|A0A9J7GYZ3-1|A0A9J7GYZ3_CRIGR Computationally mapped isoform of Spermatogenesis-associated protein 19, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Spata19 PE=4 SV=1 CANONICAL=A0A8C2M3U5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3U5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3U5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752873", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752873", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "I3LDJ2-1", "protein_name": "Spermatogenesis associated 19", "gene_name": "SPATA19", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MIITTWIVYILARKHTGFPFPPKVSSDVEVVESEAVSVVQHWLKKTEEEASQDIKEKMSASCPPTHGQDVHVTRDVVKHRLSKSGLLTNQSQEVLEERTRIQFIRWSHTRIFQVPSEVRNEVMRDRIEQVRRSMCHLTDESSQELRDRNSCKDC", "length": 154 }, "evidence": [ { "id": "A0A8C2M3U5", "url": "https://omabrowser.org/oma/group/A0A8C2M3U5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q3SZQ3-1", "protein_name": "Spermatogenesis-associated protein 19, mitochondrial", "gene_name": "SPATA19", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIITTWIVYILARKGAGLPFPPKVSSDVEVTETEAVSVVQHWLKKTEEEASQEIKEKMSTNFPPMQGQDVHVTRDVVKHHLSKSGLLANQSQEVLEERTRIQFIRWSHTRIFQVPSEARNEAMRDRIEQVRRSICHLSDEISQELRNRNSYSEC", "length": 154 }, "evidence": [ { "id": "A0A8C2M3U5", "url": "https://omabrowser.org/oma/group/A0A8C2M3U5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7Z5L4-1", "protein_name": "Spermatogenesis-associated protein 19, mitochondrial", "gene_name": "SPATA19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIITTWIVYILARKGVGLPFLPITSSDIDVVESEAVSVLHHWLKKTEEEASRGIKEKLSINHPSQGVREKMSTDSPPTHGQDIHVTRDVVKHHLSKSDLLANQSQEVLEERTRIQFIRWSHTRIFQVPSEMTEDIMRDRIEQVRRSISRLTDVSAQDFSMRPSSSDC", "length": 167 }, "evidence": [ { "id": "A0A8C2M3U5", "url": "https://omabrowser.org/oma/group/A0A8C2M3U5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q920Q3-1", "protein_name": "Spermatogenesis-associated protein 19, mitochondrial", "gene_name": "Spata19", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIITTWIMYILARKSIGLPFPPRVNSDIEVEETEAVSVVQHWLNKTEEEASRSIKEKISINDPCTQGHDIHVTRDLVKHRLSKCDMLTDPNQEVLEERTRIQFIRWSHTRIFQVPSEMMDDVIQERIDQVRRSVSHLRCDSSSDPCYRNSCSEC", "length": 154 }, "evidence": [ { "id": "A0A8C2M3U5", "url": "https://omabrowser.org/oma/group/A0A8C2M3U5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DAQ9-1", "protein_name": "Spermatogenesis-associated protein 19, mitochondrial", "gene_name": "Spata19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIITTWIMYIFARKTVGLPFPPRVNSDIEVEESEAVSVVQHWLNKTEEEASRSIREKMSINDSPTHGHDIHVTRDLVKHHLSKSDMLTDPSQEVLEERTRIQFIRWSHTRIFQVPSEVMDDVMQERIDQVRRSVSHLMCDSYNDPSFRTSCSEC", "length": 154 }, "evidence": [ { "id": "A0A8C2M3U5", "url": "https://omabrowser.org/oma/group/A0A8C2M3U5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sperm mitochondrion organization", "id": "GO:0030382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030382", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3U5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3U5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3U5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 44, "end_pos": 46 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M3U8-1", "uniprot_ac": "A0A8C2M3U8", "uniprot_id": "A0A8C2M3U8_CRIGR", "mass": { "chemical_mass": 93590.0, "monoisotopic_mass": 93590.0 }, "refseq": { "ac": "XP_027259255", "name": "arginine/serine-rich protein PNISR isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259255" }, "gene_names": [ { "name": "Pnisr", "type": "recommended", "evidence": [ { "id": "A0A8C2M3U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U8" } ] }, { "name": "Pnisr", "type": "synonym", "evidence": [ { "id": "XP_027259255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259255" } ] } ], "protein_names": [ { "name": "Arginine/serine-rich protein PNISR isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2M3U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U8/entry#names_and_taxonomy" } ] }, { "name": "arginine/serine-rich protein PNISR isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027259255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259255" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259255" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3U8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pnisr", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U8", "locus": {} } ], "crossref": [ { "id": "100763778", "url": "https://www.ncbi.nlm.nih.gov/gene/100763778", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763778", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763778", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M3U8", "url": "https://www.orthodb.org/?gene=A0A8C2M3U8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31518", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31518", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15996", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15996", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259255", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M3U8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M3U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3U8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJI2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJI2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003499802", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499802" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Y7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765623", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3Y7", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765623", "url": "https://www.ncbi.nlm.nih.gov/gene/100765623", "database": "GeneID", "categories": [ 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300869", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300869" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Serpinb11", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406", "locus": {} } ], "crossref": [ { "id": "cd19570", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19570", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773507", "url": "https://www.ncbi.nlm.nih.gov/gene/100773507", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773507", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773507", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FKATWEH", "url": "https://omabrowser.org/oma/group/FKATWEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M406", "url": "https://www.orthodb.org/?gene=A0A8C2M406", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300869", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300869", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M406-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPITTANAEFCLDVFKELSSSNVGENIFFSPLTMFYALSMVLLGARGKSAEQMEKVLHYDNFSEFLKPKMKDSSECSEGGRMHSEFGALLSQINQLNSLSIANRVYGTKAITFHKQYLRCSEKLFQAKLKTVDFELSTEETRKSINAWVENKTNGKVTNLFGKGTIDPSSIMVLVSAIYFKGQWKNKFEKSETVKAPFHISVGKSAVVDMMYQTGTFKLAFIKEPQMQVLELPYANNKLRMIILLPVGTANVNQIEKHLNVKMLQEWTNSSNMVEREVDVHIPKFNLAVKYDLNSILKSLGMRDIFSVATADLSGMSPDKGLYLSKVVHKSYVDVNEEGTEAAAATGESIAVKRLPVAVQFTADSPFLFTIQDDSGNMLFAGKFVSP", "length": 388, "header": "tr|A0A8C2M406-1|A0A8C2M406_CRIGR Isoform 1 of Serpin B11 OS=Cricetulus griseus OX=10029 GN=Serpinb11 PE=3 SV=1 CANONICAL=A0A8C2M406-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M406-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406/entry", "sequence": { "sequence": "MNPITTANAEFCLDVFKELSSSNVGENIFFSPLTMFYALSMVLLGARGKSAEQMEKVLHYDNFSEFLKPKMKDSSECSEGGRMHSEFGALLSQINQLNSLSIANRVYGTKAITFHKQYLRCSEKLFQAKLKTVDFELSTEETRKSINAWVENKTNGKVTNLFGKGTIDPSSIMVLVSAIYFKGQWKNKFEKSETVKAPFHISVGKSAVVDMMYQTGTFKLAFIKEPQMQVLELPYANNKLRMIILLPVGTANVNQIEKHLNVKMLQEWTNSSNMVEREVDVHIPKFNLAVKYDLNSILKSLGMRDIFSVATADLSGMSPDKGLYLSKVVHKSYVDVNEEGTEAAAATGESIAVKRLPVAVQFTADSPFLFTIQDDSGNMLFAGKFVSP", "length": 388, "header": "tr|A0A8C2M406-1|A0A8C2M406_CRIGR Isoform 1 of Serpin B11 OS=Cricetulus griseus OX=10029 GN=Serpinb11 PE=3 SV=1 CANONICAL=A0A8C2M406-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773507", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773507", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y659-1", "protein_name": "Serpin family B member 12", "gene_name": "SERPINB12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGSISRMIIEFCLDLYNKLNRTAKGQNIVFSPMSISTSLGLILLGARNNTAAQIEEVLHVSHAAGTTSLESELEGAVPENKSELSQERESSPSLCNTDGNLNHEAFHALLLQLQNLGKDYVLSLANSLFIQQGFEPHQKYLMCSKELYRAALETVDFQRALEASRLKINDWVESETQGKIKELFAPGVIDSHTILVLVNVIYFKASWEHKFEEKNTVQRDFKLNQNERKPVQMMYQKGTFKLGYIEELGTQVLELPYAQKLLSMIILLPGETADGSPSGLEQTESTMTYENLMLWFSSEHMFETVVEVYLPRFKLEGTFDLNEVLKAMGMTDIFSESKADLSALSSEKSLVLSNIVHKAYVEVNEEGTTAAAATGATIVRRSLPLIEVFIADRPFLFFIRHNPTSTILFFGKFCSP", "length": 416 }, "evidence": [ { "id": "A0A8C2M406", "url": "https://omabrowser.org/oma/group/A0A8C2M406/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZJI7-1", "protein_name": "Serpin family B member 11", "gene_name": "Serpinb11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSITTANTEFCLDVFKELSSSNVGENIFFSPLTTFYALSMLLLGARGKSAEQMEKVLHYDNFSGFLKAKIKNSSECSQGGRMHPEFRALVSHINQQNSLSIANRIYGTKAIEFHKQYIRCCEKLYQAKLQTVDFELSAEETRKSINAWVENKTHGKITNLFDKGTIDPSSVMVLVSAIYFKGQWQNKFQKTETVKAPFHISVGKSAVVDMMYQTGTFKLAFIKEPQMQVLELPYANNKLRMIILLPVGTASVNQIEKHLNAKMLREWTSPSNMVERVVDVHIPKFSLSVKYDLNTLLKSLGMSDIFNVAKADLSGMSPDKGLYLSKVVHKSYVDVNEEGTEAAAATGETISVKRLPVTVQFTANCPFLFFIWDEFYNILFAGKFASP", "length": 388 }, "evidence": [ { "id": "A0A8C2M406", "url": "https://omabrowser.org/oma/group/A0A8C2M406/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "I3LJB0-1", "protein_name": "Serpin B7", "gene_name": "SERPINB11", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DSLSNANVEFCLDVFKELSSNHGGDNVFFSPLSLLYALSMILLGARGNSAEQMEKVLHFNHIAESLGPEFKDSAKCSQIGRIHSQFGVLFSQINQPDSNYTLSIANRLYGTKAMAFHKQYLNCSEKLYQASLQTVDFEWSAEETRKTINAWVESKTNGKVTNLFGKGTIDSSCVMVLVNAIYFKGQWQNKFQEKETVKTPFQLSKGKSVIVEMMCQTGKFKLATIKEPQMQVLELPYVNHELSMIILLPVGTNDLDQVERQLNSKTFQEWTSPSNMVERDVEVHLPRFKLEIKYELNSLLKSLGMTDIFNWVKADLSGMSSAKGLYVSKVIHKSYVDVNEEGTEAAAATGDILVVKRLPIRAQFVANHPFLFFIRHIHTNTLLFCGKLTSP", "length": 391 }, "evidence": [ { "id": "A0A8C2M406", "url": "https://omabrowser.org/oma/group/A0A8C2M406/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q96P15-1", "protein_name": "Serpin B11", "gene_name": "SERPINB11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSLSTANVEFCLDVFKELNSNNIGDNIFFSSLSLLYALSMVLLGARGETEEQLEKVLHFSHTVDSLKPGFKDSPKCSQAGRIHSEFGVEFSQINQPDSNCTLSIANRLYGTKTMAFHQQYLSCSEKWYQARLQTVDFEQSTEETRKTINAWVENKTNGKVANLFGKSTIDPSSVMVLVNAIYFKGQWQNKFQVRETVKSPFQLSEGKNVTVEMMYQIGTFKLAFVKEPQMQVLELPYVNNKLSMIILLPVGIANLKQIEKQLNSGTFHEWTSSSNMMEREVEVHLPRFKLETKYELNSLLKSLGVTDLFNQVKADLSGMSPTKGLYLSKAIHKSYLDVSEEGTEAAAATGDSIAVKSLPMRAQFKANHPFLFFIRHTHTNTILFCGKLASP", "length": 392 }, "evidence": [ { "id": "A0A8C2M406", "url": "https://omabrowser.org/oma/group/A0A8C2M406/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQV3-1", "protein_name": "Serpin B11", "gene_name": "Serpinb11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPITTASTEFCLDVFKELSSNNVGENIFFSPLTTFYALSMLLLGTRGKSAEQMEKVLHYDSFSGVLKAKTKNSSECSQVGVMHPDFRALISHINQQNSLSVANRIYGTRSISFHKQYVRCCEKLYQAKLQTVDFELSTEETRKSINAWVKNKTNGKITNLFAKGTIDPSSVMVLVSAIYFKGQWQNKFQKRETVKAPFHMGVGKSAVVNMMYQTGTFKLAIIKEPEMQVLELPYANNKLRMIILLPVGTASVSQIEKHLNVKMLREWTNPSNMVEREVDVHIPKFSLSVKYDLNTLLKSLGMRDIFNVANADLSGMSPDKGLYLSKVVHKSYVDVNEEGTEAAAATGESISVKRLPVTVQFTANCPFLFFIWDESGNILFAGKFASP", "length": 388 }, "evidence": [ { "id": "A0A8C2M406", "url": "https://omabrowser.org/oma/group/A0A8C2M406/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SIR9-1", "protein_name": "Serpin-Z10", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MELGKSIENHNDVVVRLTKHVIATVANGSNLVFSPISINVLLSLIAAGSCSVTKEQILSFLMLPSTDHLNLVLAQIIDGGTEKSDLRLSIANGVWIDKFFSLKLSFKDLLENSYKATCSQVDFASKPSEVIDEVNTWAEVHTNGLIKQILSRDSIDTIRSSTLVLANAVYFKGAWSSKFDANMTKKNDFHLLDGTSVKVPFMTNYEDQYLRSYDGFKVLRLPYIEDQRQFSMYIYLPNDKEGLAPLLEKIGSEPSFFDNHIPLHCISVGAFRIPKFKFSFEFNASEVLKDMGLTSPFNNGGGLTEMVDSPSNGDDLYVSSILHKACIEVDEEGTEAAAVSVGVVSCTSFRRNPDFVADRPFLFTVREDKSGVILFMGQVLDPSKH", "length": 385 }, "evidence": [ { "id": "A0A8C2M406", "url": "https://omabrowser.org/oma/group/A0A8C2M406/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M406", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M406", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M406" }, { "id": "SM00093", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serpin", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 388, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M432-1", "uniprot_ac": "A0A8C2M432", "uniprot_id": "A0A8C2M432_CRIGR", "mass": { "chemical_mass": 37149.0, "monoisotopic_mass": 37149.0 }, "refseq": { "ac": "XP_027253758", "name": "sialic acid-binding Ig-like lectin 15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253758" }, "gene_names": [ { "name": "LOC113833666", "type": "recommended", "evidence": [ { "id": "A0A8C2M432", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ] }, { "name": "LOC113833666", "type": "synonym", "evidence": [ { "id": "XP_027253758", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253758" } ] } ], "protein_names": [ { "name": "Sialic acid-binding Ig-like lectin 15", "type": "synonym", "evidence": [ { "id": "A0A8C2M432", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432/entry#names_and_taxonomy" } ] }, { "name": "sialic acid-binding Ig-like lectin 15", "type": "synonym", "evidence": [ { "id": "XP_027253758", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253758" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253758" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833666", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432", "locus": {} } ], "crossref": [ { "id": "113833666", "url": "https://www.ncbi.nlm.nih.gov/gene/113833666", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833666", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833666", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M432", "url": "https://www.orthodb.org/?gene=A0A8C2M432", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46942", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46942", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46942:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46942:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253758", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M432-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGSIQLLACLACVLQMGSLVKTRRDALGDLLHTEAHSAPEQRWSMQVPAEVSAEAGEAAMLPCTFTHPHRHYDGTLTAIWRAGEPYAGPQVFRCTAARGSELCQTALSLQGRFRLLGNPRRNDLSLRVERLALADSGRYFCRVEFAGDAHDRYESRHGIRLRVTAAPRIVNISVLPGPAHAFHALCTAEGEPPPALSWSGPALDNSSAAIRGQGHGYQVTAELPALTRDGRYTCTAANSLGHAEASVYLFRFHGAPGVSTLALLLGALGLKALLLLGFLGARATRNRLDHLVTQDTPPQSQVHESNYENLNQMNPPGHQLPRFCSEEILGHHHPIMHHEK", "length": 341, "header": "tr|A0A8C2M432-1|A0A8C2M432_CRIGR Isoform 1 of Sialic acid-binding Ig-like lectin 15 OS=Cricetulus griseus OX=10029 GN=LOC113833666 PE=4 SV=1 CANONICAL=A0A8C2M432-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M432-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432/entry", "sequence": { "sequence": "MEGSIQLLACLACVLQMGSLVKTRRDALGDLLHTEAHSAPEQRWSMQVPAEVSAEAGEAAMLPCTFTHPHRHYDGTLTAIWRAGEPYAGPQVFRCTAARGSELCQTALSLQGRFRLLGNPRRNDLSLRVERLALADSGRYFCRVEFAGDAHDRYESRHGIRLRVTAAPRIVNISVLPGPAHAFHALCTAEGEPPPALSWSGPALDNSSAAIRGQGHGYQVTAELPALTRDGRYTCTAANSLGHAEASVYLFRFHGAPGVSTLALLLGALGLKALLLLGFLGARATRNRLDHLVTQDTPPQSQVHESNYENLNQMNPPGHQLPRFCSEEILGHHHPIMHHEK", "length": 341, "header": "tr|A0A8C2M432-1|A0A8C2M432_CRIGR Isoform 1 of Sialic acid-binding Ig-like lectin 15 OS=Cricetulus griseus OX=10029 GN=LOC113833666 PE=4 SV=1 CANONICAL=A0A8C2M432-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833666", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833666", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of bone resorption", "id": "GO:0045124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045124", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "pmid": "" }, { "name": "regulation of actin cytoskeleton organization", "id": "GO:0032956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032956", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "pmid": "" }, { "name": "regulation of osteoclast development", "id": "GO:2001204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001204", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M432", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M432", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M432" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 145, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 206, "end_pos": 208 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M445-1", "uniprot_ac": "A0A8C2M445", "uniprot_id": "A0A8C2M445_CRIGR", "mass": { "chemical_mass": 71092.0, "monoisotopic_mass": 71092.0 }, "refseq": { "ac": "XP_003499403", "name": "kelch-like protein 34", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499403" }, "gene_names": [ { "name": "Klhl34", "type": "recommended", "evidence": [ { "id": "A0A8C2M445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M445" } ] }, { "name": "Klhl34", "type": "synonym", "evidence": [ { "id": "XP_003499403", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499403" } ] } ], "protein_names": [ { "name": "Kelch-like protein 34", "type": "synonym", "evidence": [ { "id": "A0A8C2M445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M445/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 34", "type": "synonym", "evidence": [ { "id": "XP_003499403", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499403" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613731.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003499403", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499403" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M445", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M445" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klhl34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M445", "locus": {} } ], "crossref": [ { "id": "cd18264", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18264", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752600", "url": "https://www.ncbi.nlm.nih.gov/gene/100752600", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": 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"categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003499403", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499403", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M445", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M445", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M445-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M445-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYFLSYCKAHGGSLLTSYQALRAEGFLCDVTLETEGNEFPAHRSLLACSSDYFKALFKSHTQESQARVIHLQVPSAAGLQRLLDFIYTAWLPLSMDTVEDTLEAASYLQVTGALGLCGHYLERQLNPENCCFTANVAARFGLARTLGAAEHCIVRHLRELLLMGPGPSGLLELNPISMKVVLGAPDVARVAETRLLGLALAWLKQEPATQRLAHSSTLLGCIRFGLVPAGVLRRVYSGSGLNLPTRIKGLIIQALNYHTAPSRQPLLQEEQTSIRSAQTRILLVGGLRARETVTEEIVVLPEVVRNRRPAPEPEEEEEEEEEEMEEKEWELTQDVVSFDVYNHSWRRLTRLPAPLLGHSVCTMGNFLFVLGGESLSGSPSSSLADGPRSVTALVHRYDPRFHTWTEVPAMREARAYFWCGVVGDSLLAVGGLGSCGEALASVEMYDLRRDRWMAAGELPRALHGHAGAVGDHGVVYISGGKAGRGEGGTSSLRDMYSLSPGERAWSKRAPMGTARYGHYLSVLRGAVFAFLGRYEPFSEIERYDPSTDQWTRLRSLPYDRFCYGLAVVEETVLLLGGLKWRDSRQVPTRNVVGYDLDLDRWEDIGCVLPWAWSGLRCAVLQLEEGGEETREGEPGEALDLVLG", "length": 644, "header": "tr|A0A8C2M445-1|A0A8C2M445_CRIGR Isoform 1 of Kelch-like protein 34 OS=Cricetulus griseus OX=10029 GN=Klhl34 PE=4 SV=1 CANONICAL=A0A8C2M445-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M445-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M445/entry", "sequence": { "sequence": "MSYFLSYCKAHGGSLLTSYQALRAEGFLCDVTLETEGNEFPAHRSLLACSSDYFKALFKSHTQESQARVIHLQVPSAAGLQRLLDFIYTAWLPLSMDTVEDTLEAASYLQVTGALGLCGHYLERQLNPENCCFTANVAARFGLARTLGAAEHCIVRHLRELLLMGPGPSGLLELNPISMKVVLGAPDVARVAETRLLGLALAWLKQEPATQRLAHSSTLLGCIRFGLVPAGVLRRVYSGSGLNLPTRIKGLIIQALNYHTAPSRQPLLQEEQTSIRSAQTRILLVGGLRARETVTEEIVVLPEVVRNRRPAPEPEEEEEEEEEEMEEKEWELTQDVVSFDVYNHSWRRLTRLPAPLLGHSVCTMGNFLFVLGGESLSGSPSSSLADGPRSVTALVHRYDPRFHTWTEVPAMREARAYFWCGVVGDSLLAVGGLGSCGEALASVEMYDLRRDRWMAAGELPRALHGHAGAVGDHGVVYISGGKAGRGEGGTSSLRDMYSLSPGERAWSKRAPMGTARYGHYLSVLRGAVFAFLGRYEPFSEIERYDPSTDQWTRLRSLPYDRFCYGLAVVEETVLLLGGLKWRDSRQVPTRNVVGYDLDLDRWEDIGCVLPWAWSGLRCAVLQLEEGGEETREGEPGEALDLVLG", "length": 644, "header": "tr|A0A8C2M445-1|A0A8C2M445_CRIGR Isoform 1 of Kelch-like protein 34 OS=Cricetulus griseus OX=10029 GN=Klhl34 PE=4 SV=1 CANONICAL=A0A8C2M445-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M499-1", "uniprot_ac": "A0A8C2M499", "uniprot_id": "A0A8C2M499_CRIGR", "mass": { "chemical_mass": 11311.0, "monoisotopic_mass": 11311.0 }, "refseq": { "ac": "XP_027255031", "name": "uncharacterized protein C1orf122 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255031" }, "gene_names": [ { "name": "LOC103163945", "type": "recommended", "evidence": [ { "id": "A0A8C2M499", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M499" } ] }, { "name": "LOC103163945", "type": "synonym", "evidence": [ { "id": "XP_027255031", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255031" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C1orf122 homolog", "type": "synonym", "evidence": [ { "id": "A0A8C2M499", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255031", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255031" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M499", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M499" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M499", "locus": {} } ], "crossref": [ { "id": "103163945", "url": "https://www.ncbi.nlm.nih.gov/gene/103163945", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163945", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163945", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M499", "url": "https://www.orthodb.org/?gene=A0A8C2M499", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR41401", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41401", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41401:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41401:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255031", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255031", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M499", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M499", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M499-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M499-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEWGPGAAWSRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNGSAKSGAPPQPAVSARGGLPKDAGDGAAEP", "length": 110, "header": "tr|A0A8C2M499-1|A0A8C2M499_CRIGR Isoform 1 of Uncharacterized protein C1orf122 homolog OS=Cricetulus griseus OX=10029 GN=LOC103163945 PE=4 SV=1 CANONICAL=A0A8C2M499-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M499-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M499/entry", "sequence": { "sequence": "MEWGPGAAWSRGEAAGVDRGKAGLGLGGRPPPQPPRDERAQQLLDAVEQRQRQLLDTIAACEEMLRQLGRRRPEPAGGGNGSAKSGAPPQPAVSARGGLPKDAGDGAAEP", "length": 110, "header": "tr|A0A8C2M499-1|A0A8C2M499_CRIGR Isoform 1 of Uncharacterized protein C1orf122 homolog OS=Cricetulus griseus OX=10029 GN=LOC103163945 PE=4 SV=1 CANONICAL=A0A8C2M499-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307676", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307676" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Q2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Q2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773619", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Q2", "locus": {} } ], "crossref": [ { "id": "100773619", "url": "https://www.ncbi.nlm.nih.gov/gene/100773619", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein 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"length": 1306, "header": "tr|A0A8C2M4Q2-1|A0A8C2M4Q2_CRIGR Isoform 1 of Tetratricopeptide repeat protein 41 OS=Cricetulus griseus OX=10029 GN=LOC100773619 PE=4 SV=1 CANONICAL=A0A8C2M4Q2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1117, "end_pos": 1119 }, { "start_pos": 1124, "end_pos": 1126 }, { "start_pos": 1301, "end_pos": 1303 }, { "start_pos": 640, "end_pos": 642 }, { "start_pos": 682, "end_pos": 684 }, { "start_pos": 747, "end_pos": 749 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243710", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243710" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4W1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mpv17l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1", "locus": {} } ], "crossref": [ { "id": "100751270", "url": "https://www.ncbi.nlm.nih.gov/gene/100751270", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751270", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M4W1", "url": "https://www.orthodb.org/?gene=A0A8C2M4W1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04117", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04117", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243710", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243710", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M4W1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M4W1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4C9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4C9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4C9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J684", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J684", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J684-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J684-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASWWRVFPRAARRYPWPTNVLLYAGLFSAGDALQQRLRGGPADWHQTRRVATLAVTFHGNFNYVWLRLLERALPGRAPRTVLAKVLCDQTVGGPIALSAFYVGMSILHGKDDIFLDLKQKFWNTYKSGLMYWPFVQLTNFSLVPVHWRTAYTGLCGFLWATFLCFSQQSGDGTVKSMFIFFLRKEAGDRPPEK", "length": 194, "header": "tr|A0A8C2M4W1-1|A0A8C2M4W1_CRIGR Isoform 1 of Mpv17-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Mpv17l PE=3 SV=1 CANONICAL=A0A8C2M4W1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M4W1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1/entry", "sequence": { "sequence": "MASWWRVFPRAARRYPWPTNVLLYAGLFSAGDALQQRLRGGPADWHQTRRVATLAVTFHGNFNYVWLRLLERALPGRAPRTVLAKVLCDQTVGGPIALSAFYVGMSILHGKDDIFLDLKQKFWNTYKSGLMYWPFVQLTNFSLVPVHWRTAYTGLCGFLWATFLCFSQQSGDGTVKSMFIFFLRKEAGDRPPEK", "length": 194, "header": "tr|A0A8C2M4W1-1|A0A8C2M4W1_CRIGR Isoform 1 of Mpv17-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Mpv17l PE=3 SV=1 CANONICAL=A0A8C2M4W1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J4C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4C9/entry", "sequence": { "sequence": "MEESIYLGSPPPRARAGRRARRAPGMSILHGKDDIFLDLKQKFWNTYKSGLMYWPFVQLTNFSLVPVHWRTAYTGLCGFLWATFLCFSQQSGDGTVKSMFIFFLRKEAGDRPPEK", "length": 115, "header": "tr|A0A9J7J4C9-1|A0A9J7J4C9_CRIGR Computationally mapped isoform of Mpv17-like protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Mpv17l PE=3 SV=1 CANONICAL=A0A8C2M4W1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J684-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J684/entry", "sequence": { "sequence": "MASWWRVFPRAARRYPWPTNVLLYAGLFSAGDALQQRLRGGPADWHQTRRVATLAVTFHGNFNYVWLRLLERALPGRAPRTVLAKVLCDQTVGGPIALSAFYVEWSDVLAFCAADQLQPCPCALENSLHGTVWFPLGHLPMLFTAERRWHSEVHVHLLSQEGGR", "length": 164, "header": "tr|A0A9J7J684-1|A0A9J7J684_CRIGR Computationally mapped isoform of Mpv17-like protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Mpv17l PE=3 SV=1 CANONICAL=A0A8C2M4W1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"GO:1901029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901029", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4W1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1" } ], "pmid": "" }, { "name": "mitochondrial ribosome assembly", "id": "GO:0061668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061668", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4W1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4W1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4W1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 140, "end_pos": 142 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M4Y7-1", "uniprot_ac": "A0A8C2M4Y7", "uniprot_id": "A0A8C2M4Y7_CRIGR", "mass": { "chemical_mass": 53488.0, "monoisotopic_mass": 53488.0 }, "refseq": { "ac": "XP_003503187", "name": "protein ABHD16B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503187" }, "gene_names": [ { "name": "Abhd16b", "type": "recommended", "evidence": [ { "id": "A0A8C2M4Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ] }, { "name": "Abhd16b", "type": "synonym", "evidence": [ { "id": "XP_003503187", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503187" } ] } ], "protein_names": [ { "name": "Protein ABHD16B", "type": "synonym", "evidence": [ { "id": "A0A8C2M4Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7/entry#names_and_taxonomy" } ] }, { "name": "protein ABHD16B", "type": "synonym", "evidence": [ { "id": "XP_003503187", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503187" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613943.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503187", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503187" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Abhd16b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7", "locus": {} } ], "crossref": [ { "id": "100762917", "url": "https://www.ncbi.nlm.nih.gov/gene/100762917", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762917", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762917", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHRALTC", "url": "https://omabrowser.org/oma/group/GHRALTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M4Y7", "url": "https://www.orthodb.org/?gene=A0A8C2M4Y7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12277:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12277:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503187", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503187", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M4Y7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCVICFMKALVHVFKIYLTANYTYNFRGWPVDFRWDDIHTTVSGSSSHRALTCAAAAAGVWLLHDAALGEDPLTRPPRGTRSQAQCLLQQIRELPSQLASYALAHSLGRWLVYPGSMFLMTRALLPLLQQGQERLVERYRGRRAKLVACDGNEIDTMFMDRRQHPGSHGRGLRLVICCEGNAGFYEMGCLSAPLEAGYSVLGWNHPGFGGSTGAPFPQHDANAMDVVVKYALHRLHFPPAHVVVYGWSIGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPHSWKGLVVRTVREHFNLNVAEQLCCYPGPVLLLRRTQDDVVSTSSHIANLPSCQVEGDVEGNRGNELLLRLLQHRYPSVMAREGRTVVTRWLRTSNLAQEAAFYARYRVDDEWCLATLRSYRDHCQKEMDDAKTWGPHGLTFPWLVGQGLSPRRRRQLALFLARRHLKNLEATHCSPLEPEDFQLPWRL", "length": 474, "header": "tr|A0A8C2M4Y7-1|A0A8C2M4Y7_CRIGR Isoform 1 of Protein ABHD16B OS=Cricetulus griseus OX=10029 GN=Abhd16b PE=3 SV=1 CANONICAL=A0A8C2M4Y7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M4Y7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7/entry", "sequence": { "sequence": "MCVICFMKALVHVFKIYLTANYTYNFRGWPVDFRWDDIHTTVSGSSSHRALTCAAAAAGVWLLHDAALGEDPLTRPPRGTRSQAQCLLQQIRELPSQLASYALAHSLGRWLVYPGSMFLMTRALLPLLQQGQERLVERYRGRRAKLVACDGNEIDTMFMDRRQHPGSHGRGLRLVICCEGNAGFYEMGCLSAPLEAGYSVLGWNHPGFGGSTGAPFPQHDANAMDVVVKYALHRLHFPPAHVVVYGWSIGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPHSWKGLVVRTVREHFNLNVAEQLCCYPGPVLLLRRTQDDVVSTSSHIANLPSCQVEGDVEGNRGNELLLRLLQHRYPSVMAREGRTVVTRWLRTSNLAQEAAFYARYRVDDEWCLATLRSYRDHCQKEMDDAKTWGPHGLTFPWLVGQGLSPRRRRQLALFLARRHLKNLEATHCSPLEPEDFQLPWRL", "length": 474, "header": "tr|A0A8C2M4Y7-1|A0A8C2M4Y7_CRIGR Isoform 1 of Protein ABHD16B OS=Cricetulus griseus OX=10029 GN=Abhd16b PE=3 SV=1 CANONICAL=A0A8C2M4Y7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762917", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762917", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZT91-1", "protein_name": "Abhydrolase domain containing 16B", "gene_name": "ABHD16B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MCVVCFVKALVHVFKIYLTANYTYNFRDWPVDFRWDDVCAAAGGGSGHGALTCAAAAAGVWLLRGAALGGDAPGRPSRGARSQAQCLLQQIRELPGQLASYALAHSLGRWLVYPGSMFLMTRALLPLLQQGQERLVERYGGRRAKLVACDGNEIDTMFMDRRQCPGGQGRGLRLVICCEGNAGFYEMGCLAAPLEAGYSVLGWNHPGFGGSTGAPFPQHDANAMDVVVKYALHRLHFPPAHVVVYGWSIGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPHCWKGLVVRTVREHFNLNVAEQLCRYPGPVLLLRRTQDDVVSTSGHLRPLPSGDVEGNRGNELLLRLLQHRYPAVMAREGRAVVTRWLRASSLAQEAAFYTRHHVDDEWCLALLRSYRTRCQDRQEDEEAWGPHGLAFPWLVGQGLSPRRRRQLALFLARKHLKNVEATHYSRLEPEDFQLPWRL", "length": 470 }, "evidence": [ { "id": "A0A8C2M4Y7", "url": "https://omabrowser.org/oma/group/A0A8C2M4Y7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q5XIL6-1", "protein_name": "ABHD16B", "gene_name": "Abhd16b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVICFVKALVHVFKIYLTANYSYNFRSWPVDFRWDDLHVPGTNNSSHRALTCAAAAAGVWLLHDAALGEDALTRPPRGARSQVQCLLQQIRELPSQLASYALAHSLGRWLVYPGSMFLMTRALLPLLQQGQERLVDRYRGRRAKLVACDGNEIDTMFMDRRQHPGSHGRGLCLVICCEGNAGFYEMGCLSAPLEAGYSVLGWNHPGFGGSTGAPFPQHDANAMDVVVKYALHRLHFSPANVVVYGWSIGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPQSWKGLVVRTVREHFNLNVAEQLCCYPGPVLLLRRTQDDVVSTSGHVPSLPSCQVEGDVEGNRGNELLLRLLEHRYPSVMAREGRTVVIRWLRASNLAQETALYARYHVDDEWCLATLRSYREGRQKDLDHTKTWGPHGPSFPWFVGQGLSARRRRHLALFLARRHLKNLEATHCSPLEPEDFQLPWRL", "length": 474 }, "evidence": [ { "id": "A0A8C2M4Y7", "url": "https://omabrowser.org/oma/group/A0A8C2M4Y7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80YU0-1", "protein_name": "ABHD16B", "gene_name": "Abhd16b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVICFVKALVHVFKIYLTANYSYNFRSWPVDFRWDDLHAPSTGNSSQRALTCAAAAAGVWLLHDAALGGDTLTRPPRGARSQVQCLLQQIRELPSQLASYALAHSLGRWLVYPGSMFLMTRALMPLLQQGQERLVDRYRGRRAKLVACDGNEIDTMFMDRRQHPGSHGRGLCLVICCEGNAGFYEMGCLSAPLEAGYSVLGWNHPGFGGSTGAPFPQHDANAMDVVVKYALHRLNFPPAHVVVYGWSIGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPQSWKGLVVRTVREHFNLNVAEQLCCYPGPVLLLRRTQDDVVSTSNHIPSMPSCQVEGDVEGNRGNELLLRLLQHRYPSVMAREGRTVVTRWLRASNLAQETALYARYRVDDEWCLATLRSYRERCQKELDDAEAWGPHGLSFPWFVGQGLSARRRRQLALFLARRHLKNLEATHCSPLEPEDFQLPWRL", "length": 474 }, "evidence": [ { "id": "A0A8C2M4Y7", "url": "https://omabrowser.org/oma/group/A0A8C2M4Y7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H3Z7-1", "protein_name": "ABHD16B", "gene_name": "ABHD16B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCVICFVKALVRVFKIYLTASYTYPFRGWPVAFRWDDVRAVGRSSSHRALTCAAAAAGVWLLRDETLGGDALGRPPRGARSQAQCLLQQLRELPGQLASYALAHSLGRWLVYPGSVSLMTRALLPLLQQGQERLVERYHGRRAKLVACDGNEIDTMFMDRRQHPGSHVHGPRLVICCEGNAGFYEMGCLSAPLEAGYSVLGWNHPGFGSSTGVPFPQHDANAMDVVVEYALHRLHFPPAHLVVYGWSVGGFTATWATMTYPELGALVLDATFDDLVPLALKVMPHSWKGLVVRTVREHFNLNVAEQLCCYPGPVLLLRRTQDDVVSTSGRLRPLSPGDVEGNRGNELLLRLLEHRYPVVMAREGRAVVTRWLRAGSLAQEAAFYARYRVDEDWCLALLRSYRARCEEELEGEEALGPHGPAFPWLVGQGLSSRRRRRLALFLARKHLKNVEATHFSPLEPEEFQLPWRL", "length": 469 }, "evidence": [ { "id": "A0A8C2M4Y7", "url": "https://omabrowser.org/oma/group/A0A8C2M4Y7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phospholipase activity", "id": "GO:0004620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004620", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "pmid": "" }, { "name": "monoacylglycerol lipase activity", "id": "GO:0047372", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047372", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "monoacylglycerol catabolic process", "id": "GO:0052651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052651", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "pmid": "" }, { "name": "phosphatidylserine catabolic process", "id": "GO:0006660", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006660", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M4Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y7" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 174, "end_pos": 319, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 21, "end_pos": 23 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M4Z1-1", "uniprot_ac": "A0A8C2M4Z1", "uniprot_id": "A0A8C2M4Z1_CRIGR", "mass": { "chemical_mass": 43378.0, "monoisotopic_mass": 43378.0 }, "refseq": { "ac": "XP_007615673", "name": "cyclin-J isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615673" }, "gene_names": [ { "name": "Ccnj", "type": "recommended", "evidence": [ { "id": "A0A8C2M4Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Z1" } ] }, { "name": "Ccnj", "type": "synonym", "evidence": [ { "id": "XP_007615673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615673" } ] } ], "protein_names": [ { "name": "Cyclin-J", "type": "recommended", "evidence": [ { "id": "A0A8C2M4Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Z1/entry#names_and_taxonomy" } ] }, { "name": "cyclin-J isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007615673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615673" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 169 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613664.1) and transcript sequence (IACG01049116.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007615673.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007615673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615673" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Z1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Z1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccnj", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Z1", "locus": {} } ], "crossref": [ { "id": "cd20528", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20528", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20529", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20529", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763458", "url": "https://www.ncbi.nlm.nih.gov/gene/100763458", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763458", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763458", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M4Z1", "url": "https://www.orthodb.org/?gene=A0A8C2M4Z1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02984", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02984", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007615673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615673", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M4Z1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M4Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARHLAVYLLDLFMDRYDISIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSLQDYAFLNYAPSLVAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLVAHDNDVKEANKQRGQSASQSAQLGVFQTAQPSRPVHFQQPQYLHQTSMQYRHPVSEQPSRQQLVATTHPSSYTLQTCPTGFQTGVQGLGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER", "length": 379, "header": "tr|A0A8C2M4Z1-1|A0A8C2M4Z1_CRIGR Isoform 1 of Cyclin-J OS=Cricetulus griseus OX=10029 GN=Ccnj PE=3 SV=1 CANONICAL=A0A8C2M4Z1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M4Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Z1/entry", "sequence": { "sequence": "MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARHLAVYLLDLFMDRYDISIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSLQDYAFLNYAPSLVAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLVAHDNDVKEANKQRGQSASQSAQLGVFQTAQPSRPVHFQQPQYLHQTSMQYRHPVSEQPSRQQLVATTHPSSYTLQTCPTGFQTGVQGLGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER", "length": 379, "header": "tr|A0A8C2M4Z1-1|A0A8C2M4Z1_CRIGR Isoform 1 of Cyclin-J OS=Cricetulus griseus OX=10029 GN=Ccnj PE=3 SV=1 CANONICAL=A0A8C2M4Z1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FL69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL69/entry", "sequence": { "sequence": 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"MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARHLAVYLLDLFMDRYDISIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSLQAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLVAHDNDVKEANKQRGQSASQSAQLGVFQTAQPSRPVHFQQPQYLHQTSMQYRHPVSEQPSRQQLVATTHPSSYTLQTCPTGFQTGVQGLGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER", "length": 367, "header": "tr|A0A9J7FQU1-1|A0A9J7FQU1_CRIGR Computationally mapped isoform of Cyclin-J OS=Cricetulus griseus OX=10029 GN=Ccnj PE=3 SV=1 CANONICAL=A0A8C2M4Z1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKT3/entry", "sequence": { "sequence": "MDRYDISIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSLQDYAFLNYAPSLVAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLVAHDNDVKEANKQRGQSASQSAQLGVFQTAQPSRPVHFQQPQYLHQTSMQYRHPVSEQPSRQQLVATTHPSSYTLQTCPTGFQTGVQGLGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER", 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This record is derived from a genomic sequence (NW_003616284.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514058" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M527", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "St7l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527", "locus": {} } ], "crossref": [ { "id": "cd11557", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11557", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760945", "url": "https://www.ncbi.nlm.nih.gov/gene/100760945", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007311", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007311", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760945", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760945", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QDYEIMQ", "url": "https://omabrowser.org/oma/group/QDYEIMQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M527", "url": "https://www.orthodb.org/?gene=A0A8C2M527", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12745", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12745", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12745:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12745:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514058", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M527", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M527-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KET8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KET8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KET8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KET8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADGEYFAEAARAVGCPHAPVPGLGLGPPLGWKERLKAGLANSGSTLWFLAGLGLLYALRVPLRLCDNVTAVTGFLSSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSISHLRPLMGGTESSISEPGSPASNRESETLRHHHLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCETDFLRPSDTVMQKAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALRAGEIIYRRSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRTVSDKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKELPFFIHFTAGLCSSTAMIAFLTHQFPEVMAVFAKAVSMISRTCVEYL", "length": 559, "header": "tr|A0A8C2M527-1|A0A8C2M527_CRIGR Isoform 1 of Suppressor of tumorigenicity 7 protein-like OS=Cricetulus griseus OX=10029 GN=St7l PE=3 SV=1 CANONICAL=A0A8C2M527-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M527-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527/entry", "sequence": { "sequence": "MADGEYFAEAARAVGCPHAPVPGLGLGPPLGWKERLKAGLANSGSTLWFLAGLGLLYALRVPLRLCDNVTAVTGFLSSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSISHLRPLMGGTESSISEPGSPASNRESETLRHHHLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCETDFLRPSDTVMQKAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALRAGEIIYRRSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRTVSDKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKELPFFIHFTAGLCSSTAMIAFLTHQFPEVMAVFAKAVSMISRTCVEYL", "length": 559, "header": "tr|A0A8C2M527-1|A0A8C2M527_CRIGR Isoform 1 of Suppressor of tumorigenicity 7 protein-like OS=Cricetulus griseus OX=10029 GN=St7l PE=3 SV=1 CANONICAL=A0A8C2M527-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KET8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KET8/entry", "sequence": { "sequence": "MNLSAQDHQTFFTCETDFLRPSDTVMQKAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALRAGEIIYRRSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRTVSDKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKELPFFIHFTAGLCSSTAMIAFLTHQFPEVMAVFAKAVSMISRTCVEYL", "length": 372, "header": "tr|A0A9J7KET8-1|A0A9J7KET8_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein-like OS=Cricetulus griseus OX=10029 GN=St7l PE=3 SV=1 CANONICAL=A0A8C2M527-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M527", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M527", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760945", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760945", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A9JRA0-1", "protein_name": "Suppressor of tumorigenicity 7 protein-like", "gene_name": "st7l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADSSGSNPQSPGFTEKLKSWLCWSWTYICALWFAMVLTMVYVLRSPLKLQETVNAASVFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVENSGSAGLFSSVNGDAEPRSNVAECKVWRNPLNLFRGAEYSRYTWVTGKEPLTYYDMNLSAQDHQTFFLGDTQQLRPEDSVMQKAWRERNPQARIRAAYQAIELNRECAAAYVLLAEEEATTITEAERLFKQALKSAGKDTNLVVYIKRRLAMCARKLGRIKEAVKMMRDLMKEFPLLGMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTSALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAVAYAFFHLQHWKRAEGALNLLHCTWEGTFRIIPYPLEKGHLFYPYPGCTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFCAMLAMLTHQFPELMGVFVKAFFSTLFAPLGFFADKMESFMPSCLWHQLTNV", "length": 540 }, "evidence": [ { "id": "A0A8C2M527", "url": "https://omabrowser.org/oma/group/A0A8C2M527/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68FW3-1", "protein_name": "Suppressor of tumorigenicity 7 protein-like", "gene_name": "St7l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADGDYFAEAARAVGCPHAPVPGLGLGPPLGWKERLKAGLANSGSTLWFLAGLGLLYALRVPLRLCDNVTAVTGFLSSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSISHLRPLMGGTESSISEPGSPANSRESETLRHHHLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCETDFLRPSDTVMQKAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALRAGEIIYRRSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRTVSDKFSPETAFRKGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKELPFFIHFTAGLCSSTAMIALLTHQFPEVMGVFAKAVSMISRTCVEYL", "length": 559 }, "evidence": [ { "id": "A0A8C2M527", "url": "https://omabrowser.org/oma/group/A0A8C2M527/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8K4P7-1", "protein_name": "Suppressor of tumorigenicity 7 protein-like", "gene_name": "St7l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADGDYFAEAARAVGCPHAPVPGLGLGPPLGWKERLKAGLANSGSTLWFLAGLGLLYALRVPLRLCDNVTAVTGFLSSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSISHLRPLMGGTESSISEPGSPANSRESETLRHHHLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCETDFLRPSDTVMQKAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALRAGEIIYRRSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRTVSDKFSPETAFRKGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKELPFFIHFTAGLCSSTAMLAFLTHQFPEVMGVFAKAVSMISRTCVEYL", "length": 559 }, "evidence": [ { "id": "A0A8C2M527", "url": "https://omabrowser.org/oma/group/A0A8C2M527/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TDW4-1", "protein_name": "Suppressor of tumorigenicity 7 protein-like", "gene_name": "ST7L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADRGGVGEAAAVGASPASVPGLNPTLGWRERLRAGLAGTGASLWFVAGLGLLYALRIPLRLCENLAAVTVFLNSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSVSHLQPLMGGTESSISEPGSPSRNRENETSRQNLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCDTDFLRPSDTVMQKAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYPDVQAVLAKYDDISLPKSAAICYTAALLKTRTVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKELPLFIHFTAGFCSSTAMIAILTHQFPEIMGIFAKAVLGLWCPQPWASSGFEENTQDLKSEDLGLSSG", "length": 575 }, "evidence": [ { "id": "A0A8C2M527", "url": "https://omabrowser.org/oma/group/A0A8C2M527/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M527", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M527", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M527" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M5B7-1", "uniprot_ac": "A0A8C2M5B7", "uniprot_id": "A0A8C2M5B7_CRIGR", "mass": { "chemical_mass": 16699.0, "monoisotopic_mass": 16699.0 }, "refseq": { "ac": "XP_007638978", "name": "protein cornichon homolog 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638978" }, "gene_names": [ { "name": "Cnih1", "type": "recommended", "evidence": [ { "id": "A0A8C2M5B7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7" } ] }, { "name": "Cnih1", "type": "synonym", "evidence": [ { "id": "XP_007638978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638978" } ] } ], "protein_names": [ { "name": "Protein cornichon homolog 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2M5B7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7/entry#names_and_taxonomy" } ] }, { "name": "protein cornichon homolog 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007638978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638978" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 545 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613770.1) and transcript sequence (IACG01068410.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638978" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5B7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cnih1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7", "locus": {} } ], "crossref": [ { "id": "103160710", "url": "https://www.ncbi.nlm.nih.gov/gene/103160710", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103160710", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M5B7", "url": "https://www.orthodb.org/?gene=A0A8C2M5B7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12290", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12290", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03311", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03311", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007638978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638978", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5B7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVSS", "length": 144, "header": "tr|A0A8C2M5B7-1|A0A8C2M5B7_CRIGR Isoform 1 of Protein cornichon homolog 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cnih1 PE=3 SV=1 CANONICAL=A0A8C2M5B7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7/entry", "sequence": { "sequence": "MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVSS", "length": 144, "header": "tr|A0A8C2M5B7-1|A0A8C2M5B7_CRIGR Isoform 1 of Protein cornichon homolog 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cnih1 PE=3 SV=1 CANONICAL=A0A8C2M5B7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5B7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5B7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103160710", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160710", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5B7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5B7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5B7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M5C4-1", "uniprot_ac": "A0A8C2M5C4", "uniprot_id": "A0A8C2M5C4_CRIGR", "mass": { "chemical_mass": 55856.0, "monoisotopic_mass": 55856.0 }, "refseq": { "ac": "XP_003495720", "name": "transmembrane protein 104 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495720" }, "gene_names": [ { "name": "Tmem104", "type": "recommended", "evidence": [ { "id": "A0A8C2M5C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4" } ] }, { "name": "Tmem104", "type": "synonym", "evidence": [ { "id": "XP_003495720", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495720" } ] } ], "protein_names": [ { "name": "Putative sodium-coupled neutral amino acid transporter 12", "type": "recommended", "evidence": [ { "id": "A0A8C2M5C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 38 member 12", "type": "synonym", "evidence": [ { "id": "A0A8C2M5C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 104 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495720", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495720" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495720" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5C4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem104", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4", "locus": {} } ], "crossref": [ { "id": "100773756", "url": "https://www.ncbi.nlm.nih.gov/gene/100773756", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773756", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773756", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHREGHP", "url": "https://omabrowser.org/oma/group/GHREGHP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M5C4", "url": "https://www.orthodb.org/?gene=A0A8C2M5C4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GB27", "url": "https://www.orthodb.org/?gene=A0A9J7GB27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16189:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16189:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495720", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5C4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5W2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5W2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFASAGWLVSLVLLVFLGFMSFVTTTFVMEAMAAANAQLRWKRMETHKEEEDEDSSTASDSDILTQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCSVSGNDSCGVDTDAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFNVQKTKYLQILTSLMRWVAFAIMIVLALVRIGNRQGEGHPPLANFLGVRNLFGVCVYSFMCQHSLPSLITPISSKRHVTRLLFLDYGLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVSLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTINKHRSPFRHTLWVAFVLLWAFSCFFFVTANIVLSETQL", "length": 496, "header": "tr|A0A8C2M5C4-1|A0A8C2M5C4_CRIGR Isoform 1 of Putative sodium-coupled neutral amino acid transporter 12 OS=Cricetulus griseus OX=10029 GN=Tmem104 PE=3 SV=1 CANONICAL=A0A8C2M5C4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4/entry", "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFASAGWLVSLVLLVFLGFMSFVTTTFVMEAMAAANAQLRWKRMETHKEEEDEDSSTASDSDILTQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCSVSGNDSCGVDTDAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFNVQKTKYLQILTSLMRWVAFAIMIVLALVRIGNRQGEGHPPLANFLGVRNLFGVCVYSFMCQHSLPSLITPISSKRHVTRLLFLDYGLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVSLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTINKHRSPFRHTLWVAFVLLWAFSCFFFVTANIVLSETQL", "length": 496, "header": "tr|A0A8C2M5C4-1|A0A8C2M5C4_CRIGR Isoform 1 of Putative sodium-coupled neutral amino acid transporter 12 OS=Cricetulus griseus OX=10029 GN=Tmem104 PE=3 SV=1 CANONICAL=A0A8C2M5C4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB27/entry", "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFASAGWLVSLVLLVFLGFMSFVTTTFVMEAMAAANAQLRWKRMETHKEEEDEDSSTASDSDILTQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCVSGNDSCGVDTDAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFNVQKTKYLQILTSLMRWVAFAIMIVLALVRIGNRQGEGHPPLANFLGVRNLFGVCVYSFMCQHSLPSLITPISSKRHVTRLLFLDYGLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVSLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTINKHRSPFRHTLWVAFVLLWAFSCFFFVTANIVLSETQL", "length": 495, "header": "tr|A0A9J7GB27-1|A0A9J7GB27_CRIGR Computationally mapped isoform of Putative sodium-coupled neutral amino acid transporter 12 OS=Cricetulus griseus OX=10029 GN=Tmem104 PE=3 SV=1 CANONICAL=A0A8C2M5C4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5W2/entry", "sequence": { "sequence": "MEAMAAANAQLRWKRMETHKEEEDEDSSTASDSDILTQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCSVSGNDSCGVDTDAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFNVQKTKYLQILTSLMRWVAFAIMIVLALVRIGNRQGEGHPPLANFLGVRNLFGVCVYSFMCQHSLPSLITPISSKRHVTRLLFLDYGLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVSLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTINKHRSPFRHTLWVAFVLLWAFSCFFFVTANIVLSETQL", "length": 433, "header": "tr|A0A9J7H5W2-1|A0A9J7H5W2_CRIGR Computationally mapped isoform of Putative sodium-coupled neutral amino acid transporter 12 OS=Cricetulus griseus OX=10029 GN=Tmem104 PE=3 SV=1 CANONICAL=A0A8C2M5C4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5C4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5C4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773756", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773756", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PQM9-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "TMEM104", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGGITDTGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLMFLGFMSYMTTTFVVEAMAAANAQLRWKRMEKRKEDDEDEDSSSGVSDSDVLLRDSYERAETRPILSVQRRGSPNIFEITERVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPVSLMQVTCSAIGNHSCNVGDGTKYNDTDKCWGPIRRIDAYRLYLAAFTLLLGPFTFFNVQKTKYLQIMTSLMRWIAFILMIILALIRISRGQAEGHPSMAQLSGIRNLFGVCVYSFMCQHSLPSLITPISKKRHVNKLVLLDYILILAFYSLLSFTAIYCFRNDTLMDMYTLNFTNCEIINVAFIRYFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWLVDRIVFPAITLVPPVLVAFCTHDLESLVGITGAYAGNGIQYLIPAFLAYCSRKDTQLVFGSGTVNKHLSPFRHTFWIVFVLIWGFSCFVFVTANIVLSESKL", "length": 498 }, "evidence": [ { "id": "A0A8C2M5C4", "url": "https://omabrowser.org/oma/group/A0A8C2M5C4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A287ATA1-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "TMEM104", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTTTFVVEAMAAANAQLRWKRMENHQQEEDDDSSSASDSDVLIQNNYERAEKRPILSVQRRGSPNLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCALGNDSCGVEADAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAIMIVLALVRIGQGRGEGHPPLADLSGVRNLFGVCVYSFMCQHSLPSLVTPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLLDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLLPPVLVAFCTHDLESLVGITGAYAGTGIQYIIPAFLVYLCRKDTQLAFGYGTVNKHRSPFRHTFWVGFVLLWAFSCFFFVTANIVLSETKL", "length": 495 }, "evidence": [ { "id": "A0A8C2M5C4", "url": "https://omabrowser.org/oma/group/A0A8C2M5C4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E7F9F2-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "slc38a12", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGGITETGEPYSPFVGLVYMFNLIVGTGALTMPKAFAAAGWVVSVSLITFLAFMSFMTTTFVIEAMAAANAQLRWKRREQEEVNDSDSSSDYSDDEVIIRGRSEPVETRPILSVQRAANIDHFDIVERVEMGQMASMFFNKVGVNMFYICIIVYLYGDLAIYAAAVPVSLMEVACGNHSCSAGSVKYNDTESCWGPVRRKDAYRVFLAIFTLLLGPFTFFNAQKTKYLQILTSLMRWIAFTMMIILALIRIGKGHGEGKPSVAQISGVPNLFGVCVYSFMCQHSLPSLVTPISNKQRMSILVMADYILILCFYALLSLTAIFCFDSSLLRDMYTLNFTDNCDVLGVPVLRYFLGLFPVFTISTNFPIIAVTLRNNWKTLFHRDGGTYPWVVDRVVFPLITLVPPIIVAFCTHDLESLVGITGAYAGTGIQYIIPAFLVYFSRRHLEPVLGRDAVNKHRSPFRHTFWVCFVVLWATFCLMFVTANIVLNETKN", "length": 493 }, "evidence": [ { "id": "A0A8C2M5C4", "url": "https://omabrowser.org/oma/group/A0A8C2M5C4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3TB48-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "SLC38A12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFVGFMSFVTTTFAMEAMAAANAQLRWKRMETHKEEDDEDSSTASDSDLLSQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIITYLYGDLAIYAAAVPVSLMQVTCSVSGNDSCGVDTDARYNDTDLCWGPLRRVDVYRIYLAIFTVLLGPFTFFDVQKTKYLQILTSMMRWIAFAIMIVLALVRIGKGQGEGHPPLANFLGVQNLFGVCVYSFMCQHSLPSLITPISSKRHITRLLFLDYALILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVAITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTVNKHRSPFRHTFWVAFVLLWAFSCFFFVTAYIVLKETQL", "length": 496 }, "evidence": [ { "id": "A0A8C2M5C4", "url": "https://omabrowser.org/oma/group/A0A8C2M5C4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54S12-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "tmem104", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAGGPSDGSTYSKKTAFVYIFNLIVGVGALALPYGFSKAGLVLGLLFLAAIGFLAFITATWLIEGLSIANFILVNKKEERIIGDDDNENYQKPPTENDSLINSEYSDNKILQSNAEDRNLLEPSGGSSSSDNEQFEIKKRVEVGEMSKMFLGNIGYKVFYGVLIIYLFGDLSIYAATVPTTLANVTGGWGKFTDHTVYYFYLFLFACFVGPFSLFNFQKTKYLQFATLITRNVAFLLMIILSIIFIAQGNGASIKQVPIFEISELASIFGVSIYSFMTHHSIPGFLTPISKKDRLFTLMGLDFILVFIAYGTLCVVSLFAFGAVTNPTCATASTSIHTFIPCQIQSLYIYNFTSYNSKFVSDFLSLFPVFTLSTNYILISITLRNNLLQLITWKQDKISSKVRNVVFSLTSSLIPVGVAFCTRNVSLLVNITGSYAGLGIMFVMPALISFYSNKILIEQYHISNPKKSPFSNKFFYLLILLISVICLILATWKIIITYK", "length": 499 }, "evidence": [ { "id": "A0A8C2M5C4", "url": "https://omabrowser.org/oma/group/A0A8C2M5C4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NE00-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "SLC38A12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGEITETGELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQRRGSPNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATGNDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAVMIVLALIRIGHGQGEGHPPLADFSGVRNLFGVCVYSFMCQHSLPSLITPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPVLVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYHCRRDTQLAFGCGVSNKHRSPFRHTFWVGFVLLWAFSCFIFVTANIILSETKL", "length": 496 }, "evidence": [ { "id": "A0A8C2M5C4", "url": "https://omabrowser.org/oma/group/A0A8C2M5C4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VPF8-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPRLVNGREAAPTYSNLVGFIFIFNLIVGTGALTLPGVFARAGWMLSLIVIVLLAIISYMTVTFIIEAMACANAIRNWQTLQALRQSRSSAENSENDDNADDVSLASGAEQVGDFERVPLTIQNREFHYYQLSHKFELGEMATLFFNEFGRVMFYLCLIVYLYGDLSIYSAAVARSLRDVVCDQTNGTDTNNLMYWPGDFENNTSLACWKEHTISRLNMYRVLLIGFTLIFGPFVYFNVQKTKYLQMLTAAFRWMAFTLMICISLKLLISRGAKGHPATFNVYGIPSLFGACVYSFMCHHSLPSLLAPIRHKSMVSKILSIDYIIICAFYILLAMTGIFAFERIEDLYTLDFLPYDVAYVDFWSGLLICIDYFLALFPIFTLSTSFPIVAITLKNNLQSLFLDMSQYESYSVILRLCFPLLAIIPPFCITYFTESLSSLVAFTGTYAGTGIQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCVCLVSINLFS", "length": 509 }, "evidence": [ { "id": "A0A8C2M5C4", "url": "https://omabrowser.org/oma/group/A0A8C2M5C4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5C4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 193, "end_pos": 195, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M5C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5C4" }, { "id": "PF01490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid transporter transmembrane", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 65, "start_aa": "Tyr", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 181, "end_pos": 183 }, { "start_pos": 193, "end_pos": 195 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M5F0-1", "uniprot_ac": "A0A8C2M5F0", "uniprot_id": "A0A8C2M5F0_CRIGR", "mass": { "chemical_mass": 48408.0, "monoisotopic_mass": 48408.0 }, "refseq": { "ac": "XP_027252652", "name": "nuclear envelope integral membrane protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252652" }, "gene_names": [ { "name": "Nemp2", "type": "recommended", "evidence": [ { "id": "A0A8C2M5F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5F0" } ] }, { "name": "Nemp2", "type": "synonym", "evidence": [ { "id": "XP_027252652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252652" } ] } ], "protein_names": [ { "name": "Nuclear envelope integral membrane protein 2", "type": "synonym", "evidence": [ { "id": "A0A8C2M5F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5F0/entry#names_and_taxonomy" } ] }, { "name": "nuclear envelope integral membrane protein 2", "type": "synonym", "evidence": [ { "id": "XP_027252652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252652" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252652", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252652" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5F0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5F0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nemp2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5F0", "locus": {} } ], "crossref": [ { "id": "100751415", "url": "https://www.ncbi.nlm.nih.gov/gene/100751415", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019358", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019358", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751415", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751415", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M5F0", "url": "https://www.orthodb.org/?gene=A0A8C2M5F0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13598", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13598", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13598:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13598:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252652", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252652", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5F0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5F0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPWSWWLVLWLPPLATLPAVAVREEEAAMSVPRCKSLKETDLIKTTVSDCYCYNQNWQIEWTYMWSTVQVTVTSRGLLRFVYITGNHNCQHPEGILSFIRCVIHNFWAPEESNKMTMLITPYGETVCFSVKPIGRVFTYTVSMDRNIVDFKLLLVFMAGIFLFIYAKTLSQSPAFYYSSGTVLGVLMTPVFVLLMAKRYIPKYSTFGALMIGCWFASVYVVCQLMEDLKWLWYGNRIYVLGYILVVGLCSFAACYRHGPLADEWSRGLLMWTLRFLSLVLVYTGVAVPLFAYAVMVLLLFSWSLRYPLRAFSYLRWKMRSWFATEPLVVRFLTDDEYREQAEAATASALEELRRACCRPDFPSWLAVSRLQAPKKFADFVLGESHLSPEEVSTHETQYGLGGAFLEEQLFSLHTDSLPAS", "length": 421, "header": "tr|A0A8C2M5F0-1|A0A8C2M5F0_CRIGR Isoform 1 of Nuclear envelope integral membrane protein 2 OS=Cricetulus griseus OX=10029 GN=Nemp2 PE=3 SV=1 CANONICAL=A0A8C2M5F0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5F0/entry", "sequence": { "sequence": "MLPWSWWLVLWLPPLATLPAVAVREEEAAMSVPRCKSLKETDLIKTTVSDCYCYNQNWQIEWTYMWSTVQVTVTSRGLLRFVYITGNHNCQHPEGILSFIRCVIHNFWAPEESNKMTMLITPYGETVCFSVKPIGRVFTYTVSMDRNIVDFKLLLVFMAGIFLFIYAKTLSQSPAFYYSSGTVLGVLMTPVFVLLMAKRYIPKYSTFGALMIGCWFASVYVVCQLMEDLKWLWYGNRIYVLGYILVVGLCSFAACYRHGPLADEWSRGLLMWTLRFLSLVLVYTGVAVPLFAYAVMVLLLFSWSLRYPLRAFSYLRWKMRSWFATEPLVVRFLTDDEYREQAEAATASALEELRRACCRPDFPSWLAVSRLQAPKKFADFVLGESHLSPEEVSTHETQYGLGGAFLEEQLFSLHTDSLPAS", "length": 421, "header": "tr|A0A8C2M5F0-1|A0A8C2M5F0_CRIGR Isoform 1 of Nuclear envelope integral membrane protein 2 OS=Cricetulus griseus OX=10029 GN=Nemp2 PE=3 SV=1 CANONICAL=A0A8C2M5F0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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], "protein_names": [ { "name": "Testis-specific protein TEX28", "type": "synonym", "evidence": [ { "id": "A0A8C2M5Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9/entry#names_and_taxonomy" } ] }, { "name": "testis-specific protein TEX28", "type": "synonym", "evidence": [ { "id": "XP_027288231", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288231" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288231", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288231" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tex28", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9", "locus": {} } ], "crossref": [ { "id": "100772753", "url": "https://www.ncbi.nlm.nih.gov/gene/100772753", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772753", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772753", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M5Y9", "url": "https://www.orthodb.org/?gene=A0A8C2M5Y9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17613", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17613", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17613:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17613:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10267", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10267", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288231", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288231", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLKVESTKSSSATLPPNVPSYRSLSSSHEDYPSSHTSFSDGELARNVREGVKHRIFYLSEQLRVEKASRDENTMSYLKLVSKADRHQAPHIRQAFERVNQRTSATIAHIERKLYQCHLQLKELEEGCSPTSSVLKVSSGVDGHKQPGEKVSYSKLSKPGGEDSLPIDIARPYTLESHLSGMQQRKFSDKKYVAQQRKLMLQKMKEELTEAKKVHVGLQVSHQSLKESHVTNVREVLESLQEKKARQSLMEEQVNDHLQRYLDEICHLKQHLACTEEKMAYLSYERAKEIWDVMETFKSRITKLETQQQATQLEMMASLRTRPKDFLFRFISLLLTLTTVLLVLVSTLCSCPLPLLNSRLRTFTVFVLIGLVSLAWQKRHIISIMDWQAWVPFKWRPDFKDAKPPLDGQ", "length": 409, "header": "tr|A0A8C2M5Y9-1|A0A8C2M5Y9_CRIGR Isoform 1 of Testis-specific protein TEX28 OS=Cricetulus griseus OX=10029 GN=Tex28 PE=3 SV=1 CANONICAL=A0A8C2M5Y9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9/entry", "sequence": { "sequence": "MVLKVESTKSSSATLPPNVPSYRSLSSSHEDYPSSHTSFSDGELARNVREGVKHRIFYLSEQLRVEKASRDENTMSYLKLVSKADRHQAPHIRQAFERVNQRTSATIAHIERKLYQCHLQLKELEEGCSPTSSVLKVSSGVDGHKQPGEKVSYSKLSKPGGEDSLPIDIARPYTLESHLSGMQQRKFSDKKYVAQQRKLMLQKMKEELTEAKKVHVGLQVSHQSLKESHVTNVREVLESLQEKKARQSLMEEQVNDHLQRYLDEICHLKQHLACTEEKMAYLSYERAKEIWDVMETFKSRITKLETQQQATQLEMMASLRTRPKDFLFRFISLLLTLTTVLLVLVSTLCSCPLPLLNSRLRTFTVFVLIGLVSLAWQKRHIISIMDWQAWVPFKWRPDFKDAKPPLDGQ", "length": 409, "header": "tr|A0A8C2M5Y9-1|A0A8C2M5Y9_CRIGR Isoform 1 of Testis-specific protein TEX28 OS=Cricetulus griseus OX=10029 GN=Tex28 PE=3 SV=1 CANONICAL=A0A8C2M5Y9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 131, "start_aa": "Thr", "end_pos": 131, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr131", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772753", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772753", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 131 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"MRRHSSKSGVALPPVGQGPEACQMLTRAQLGQDPPQRTVLGVLTENEQYRRTCGQEITTIRCFSGSENVFPVAGKKVLPDHGVNEPAKHGFDIYMDEPEQRDRDTCPGREGIVFEDVYEVDTSMLKSDLHFLLDFNTVSPMLVDSNAHAQSEEATDLGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQPDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENLAKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLSEIVPCLSELHKACLSLPHRPQQAIREKYKTSKYLHVSLMEPPVVLPLQ", "length": 421, "header": "tr|A0A8C2M6B0-1|A0A8C2M6B0_CRIGR Isoform 1 of Cyclin-A1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccna1 PE=3 SV=1 CANONICAL=A0A8C2M6B0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M6B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6B0/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003614837.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510201", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510201" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6C2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6C2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmco5a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6C2", "locus": {} } ], "crossref": [ { "id": "100763134", "url": "https://www.ncbi.nlm.nih.gov/gene/100763134", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763134", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763134", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CTTMERE", "url": "https://omabrowser.org/oma/group/CTTMERE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M6C2", "url": "https://www.orthodb.org/?gene=A0A8C2M6C2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22422", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22422", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22422:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22422:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14992", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14992", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003510201", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510201", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M6C2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M6C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6C2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGQKENQLDYESEKMEILRLAQSKKNIISLNMDLERDMQRIDEANQELLLKIQEKENEVQRLESEITQTGDPAEDEDWEKENCTVMERERALQELEEETARLERKNEALVHSISELQRKLTRKSQKIVKCEQGDVEIAPEESKVKLQQLETSCADQEKELGKIMEDYAFVSQLCEDQALCIKKYQEALKRIEEELETGFLEREVSKVLSMDSEREKSNSLKSKRESVTKKASRFSKRIFRSLLFTTLFFIKLLGYLIFHLSFINPDLLINALPKILSRDVLWRLRCFLFPSLTLETEDMLPH", "length": 303, "header": "tr|A0A8C2M6C2-1|A0A8C2M6C2_CRIGR Isoform 1 of Transmembrane and coiled-coil domain-containing protein 5A isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco5a PE=4 SV=1 CANONICAL=A0A8C2M6C2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M6C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6C2/entry", "sequence": { "sequence": "MEGQKENQLDYESEKMEILRLAQSKKNIISLNMDLERDMQRIDEANQELLLKIQEKENEVQRLESEITQTGDPAEDEDWEKENCTVMERERALQELEEETARLERKNEALVHSISELQRKLTRKSQKIVKCEQGDVEIAPEESKVKLQQLETSCADQEKELGKIMEDYAFVSQLCEDQALCIKKYQEALKRIEEELETGFLEREVSKVLSMDSEREKSNSLKSKRESVTKKASRFSKRIFRSLLFTTLFFIKLLGYLIFHLSFINPDLLINALPKILSRDVLWRLRCFLFPSLTLETEDMLPH", "length": 303, "header": "tr|A0A8C2M6C2-1|A0A8C2M6C2_CRIGR Isoform 1 of Transmembrane and coiled-coil domain-containing protein 5A isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco5a PE=4 SV=1 CANONICAL=A0A8C2M6C2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRF6/entry", "sequence": { "sequence": "MEGQKENQLDYESEKMEILRLAQSKKNIISLNMDLERDMQRIDEANQELLLKIQEKENEVQRLESEITQTGDPAEDEDWEKENCTVMERERALQELEEETARLERKNEALVHSISELQRKLTRKSQKIVKCEQGDVEIAPEESKVKLQQLETSCADQEKELGKKYQEALKRIEEELETGFLEREVSKVLSMDSEREKSNSLKSKRESVTKKASRFSKRIFRSLLFTTLFFIKLLGYLIFHLSFINPDLLINALPKILSRDVLWRLRCFLFPSLTLETEDMLPH", "length": 283, "header": "tr|A0A9J7JRF6-1|A0A9J7JRF6_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 5A isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmco5a PE=4 SV=1 CANONICAL=A0A8C2M6C2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613759.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016829889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829889" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6H5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tbata", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6H5", "locus": {} } ], "crossref": [ { "id": "100768040", "url": "https://www.ncbi.nlm.nih.gov/gene/100768040", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768040", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768040", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M6H5", "url": "https://www.orthodb.org/?gene=A0A8C2M6H5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33772:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33772:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15256", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15256", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016829889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829889", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M6H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M6H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6H5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVKVKTQLAEHPLASPKAGPETEKKPEHLPKSHGDVGFQKEPVVPGIVDFEVIQEELKTYKPQAPSAYRFGRLSHHSFFSRHHPQPHRTTHIQGFTGKPVCMVRDKFSLAPLTQSALLSSCLMGMPTISAPIGDPQSNRNPQLPSDAWKKNLKDLASRVAIFTKEIETRTNELKEEPPLREQGAKYSAETGRLIPASSQALSRRRNHQGQRSHSSGKDGGAQPSILQDQELLILELLCQILQTDSLSAIQFWLLYAPPKEKDLALGLLQTAVAQLISQPSPCLPAEQLLNQLQELQKPPQETQQATYSPSLKTTKTLPLSKTEKPETMGKGQVLRVHPSEDPEEKTTKPKTES", "length": 354, "header": "tr|A0A8C2M6H5-1|A0A8C2M6H5_CRIGR Isoform 1 of Protein TBATA OS=Cricetulus griseus OX=10029 GN=Tbata PE=4 SV=1 CANONICAL=A0A8C2M6H5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M6H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6H5/entry", "sequence": { "sequence": "MTVKVKTQLAEHPLASPKAGPETEKKPEHLPKSHGDVGFQKEPVVPGIVDFEVIQEELKTYKPQAPSAYRFGRLSHHSFFSRHHPQPHRTTHIQGFTGKPVCMVRDKFSLAPLTQSALLSSCLMGMPTISAPIGDPQSNRNPQLPSDAWKKNLKDLASRVAIFTKEIETRTNELKEEPPLREQGAKYSAETGRLIPASSQALSRRRNHQGQRSHSSGKDGGAQPSILQDQELLILELLCQILQTDSLSAIQFWLLYAPPKEKDLALGLLQTAVAQLISQPSPCLPAEQLLNQLQELQKPPQETQQATYSPSLKTTKTLPLSKTEKPETMGKGQVLRVHPSEDPEEKTTKPKTES", "length": 354, "header": "tr|A0A8C2M6H5-1|A0A8C2M6H5_CRIGR Isoform 1 of Protein TBATA OS=Cricetulus griseus OX=10029 GN=Tbata PE=4 SV=1 CANONICAL=A0A8C2M6H5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6H5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6H5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768040", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M6R7-1", "uniprot_ac": "A0A8C2M6R7", "uniprot_id": "A0A8C2M6R7_CRIGR", "mass": { "chemical_mass": 204646.0, "monoisotopic_mass": 204646.0 }, "refseq": { "ac": "XP_007639415", "name": "zinc finger CCCH domain-containing protein 13 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639415" }, "gene_names": [ { "name": "Zc3h13", "type": "recommended", "evidence": [ { "id": "A0A8C2M6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ] }, { "name": "Zc3h13", "type": "synonym", "evidence": [ { "id": "XP_007639415", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639415" } ] } ], "protein_names": [ { "name": "Zinc finger CCCH domain-containing protein 13 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2M6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7/entry#names_and_taxonomy" } ] }, { "name": "zinc finger CCCH domain-containing protein 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007639415", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639415" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613795.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639415", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639415" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zc3h13", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7", "locus": {} } ], "crossref": [ { "id": "100753716", "url": "https://www.ncbi.nlm.nih.gov/gene/100753716", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753716", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753716", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EKDWPRN", "url": "https://omabrowser.org/oma/group/EKDWPRN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M6R7", "url": "https://www.orthodb.org/?gene=A0A8C2M6R7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EXR1", "url": "https://www.orthodb.org/?gene=A0A9J7EXR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F2W0", "url": "https://www.orthodb.org/?gene=A0A9J7F2W0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13585", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13585", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13585:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13585:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00642", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00642", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639415", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639415", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M6R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EXR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EXR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTAETQCRNWLKTGSCLYGNTCRFIHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTESQKRNTEESSSPVRKESSRGRHRDKEDIKIVKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSPSLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRTSKSNQSKKKGPRTPSPPPPILEDIILGKKYKEKYKVKDRIDEKPRDGKDRGRDFERQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPAHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHDRREETRGKRDREKDTREDRESEHDHRDDREPRDSRDRRDTRDRRELRDSRDIRDSRELRDYGRDAKESRDPRDSRSARDVHDYRDREARDVREARDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVREVREARDAREARDVRDARDARDVRDARDVRDGHRKDDLYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPELPEKGSRGTRSSQMDSHSSSSNYHDSWETRSSYPERDRYPERDTRDQVRDSSFERRHGERDRRDNRERDQRPSSPIRHQGRSEELERDERREERRVDRVDERRDERVRDRDRDRERERERERERERDREREKERERELERERAREREREREKERERERERERDQRDRDHDREREREREREREKEREREREERERERERERERERERERERERERAREREKERERQREWEEKDKGRDDRREKREDIREDRNLRDSHEERKSKKRYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQDSRSLSPSHLSEDRQSRWKEEDRKSERKESSRRYEEQELKERISSGDRQREQAENMDSSRARTQDLISHRQPEDRDRDRDGSDRAHDEKKKAKAPKKPIKKKKEDDGLERGNLETSEDAQVFSPKKGQKKKNIEKKRKRSKGDSDVSDEEVAPQSKKKRGPRTPPLAVKEELIDISTDKDGMLEDPLKKEDTAFSDWSDEDVPDRTEGMDPEHTVATATPGSTPSPLSSLLPPPPPVAAANTATTALASSSSSSTSSSSSATAATASASISSSATSSNANAPEDSHRKCHRTRVEKVEASHVTLEDTPHRKLVDQKRSSSLGSNRSHRSHTSGRLRSPSNDSAHRSGDDQGSRKRVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERDRRDPRQREWDREPDKEWPRTRDRDRLRERDRERDKRRDLDRERERLTADPVDRDRDRDRTFETSQSESVKRSEAKLESEHERDLDGSSRDSIAMDKERVDRDLGSVQGFEDVSKAERTESLEAGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDPQEEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQRLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKTTCQAPGQEKTEDSKLAPSSIQQELCVS", "length": 1738, "header": "tr|A0A8C2M6R7-1|A0A8C2M6R7_CRIGR Isoform 1 of Zinc finger CCCH domain-containing protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zc3h13 PE=4 SV=1 CANONICAL=A0A8C2M6R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EXR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXR1/entry", "sequence": { "sequence": "MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTAETQCRNWLKTGSCLYGNTCRFIHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTESQKRNTEESSSPVRKESSRGRHRDKEDIKIVKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSPSLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRTSKSNQSKKKGPRTPSPPPPILEDIILGKKYKEKYKVKDRIDEKPRDGKDRGRDFERQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPAHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHDRREETRGKRDREKDTREDRESEHDHRDDREPRDSRDRRDTRDRRELRDSRDIRDSRELRDYGRDAKESRDPRDSRSARDVHDYRDREARDVREARDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVREVREARDAREARDVRDARDARDVRDARDVRDGHRKDDLYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPELPEKGSRGTRSSQMDSHSSSSNYHDSWETRSSYPERDRYPERDTRDQVRDSSFERRHGERDRRDNRERDQRPSSPIRHQGRSEELERDERREERRVDRVDERRDERVRDRDRDRERERERERERERDREREKERERELERERAREREREREKERERERERERDQRDRDHDREREREREREREKEREREREERERERERERERERERERERERERAREREKERERQREWEEKDKGRDDRREKREDIREDRNLRDSHEERKSKKRYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQDSRSLSPSHLSEDRQSRWKEEDRKSERKESSRRYEEQELKERISSGDRQREQAENMDSSRARTQDLISHRQPEDRDRDRDGSDRAHDEKKKAKAPKKPIKKKKEDDGLERGNLETSEDAQVFSPKKGQKKKNIEKKRKRSKGDSDVSDEEVAPQSKKKRGPRTPPLAVKEELIDISTDKDGMLEDPLKKEDTAFSDWSDEDVPDRTEGMDPEHTVATATPGSTPSPLSSLLPPPPPVAAANTATTALASSSSSSTSSSSSATAATASASISSSATSSNANAPEDSHRKCHRTRVEKVEASHVTLEDTPHRKLVDQKRSSSLGSNRSHRSHTSGRLRSPSNDSAHRSGDDQGSRKRVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERDRRDPRQREWDREPDKEWPRTRDRDRLRERDRERDKRRDLDRERERLTADPVDRDRDRDRTFETSQSESVKRSEAKLESEHERDLDGSSRDSIAMDKERVDRDLGSVQGFEDVSKAERTESLEGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDPQEEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQRLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKTTCQAPGQEKTEDSKLAPSSIQQELCVS", "length": 1737, "header": "tr|A0A9J7EXR1-1|A0A9J7EXR1_CRIGR Computationally mapped isoform of Zinc finger CCCH domain-containing protein 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zc3h13 PE=4 SV=1 CANONICAL=A0A8C2M6R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W0/entry", "sequence": { "sequence": "MKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSPSLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRTSKSNQSKKKGPRTPSPPPPILEDIILGKKYKEKYKVKDRIDEKPRDGKDRGRDFERQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPAHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHDRREETRGKRDREKDTREDRESEHDHRDDREPRDSRDRRDTRDRRELRDSRDIRDSRELRDYGRDAKESRDPRDSRSARDVHDYRDREARDVREARDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVRDVREVREARDAREARDVRDARDARDVRDARDVRDGHRKDDLYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPELPEKGSRGTRSSQMDSHSSSSNYHDSWETRSSYPERDRYPERDTRDQVRDSSFERRHGERDRRDNRERDQRPSSPIRHQGRSEELERDERREERRVDRVDERRDERVRDRDRDRERERERERERERDREREKERERELERERAREREREREKERERERERERDQRDRDHDREREREREREREKEREREREERERERERERERERERERERERERAREREKERERQREWEEKDKGRDDRREKREDIREDRNLRDSHEERKSKKRYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQDSRSLSPSHLSEDRQSRWKEEDRKSERKESSRRYEEQELKERISSGDRQREQAENMDSSRARTQDLISHRQPEDRDRDRDGSDRAHDEKKKAKAPKKPIKKKKEDDGLERGNLETSEDAQVFSPKKGQKKKNIEKKRKRSKGDSDVSDEEVAPQSKKKRGPRTPPLAVKEELIDISTDKDGMLEDPLKKEDTAFSDWSDEDVPDRTEGMDPEHTVATATPGSTPSPLSSLLPPPPPVAAANTATTALASSSSSSTSSSSSATAATASASISSSATSSNANAPEDSHRKCHRTRVEKVEASHVTLEDTPHRKLVDQKRSSSLGSNRSHRSHTSGRLRSPSNDSAHRSGDDQGSRKRVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERDRRDPRQREWDREPDKEWPRTRDRDRLRERDRERDKRRDLDRERERLTADPVDRDRDRDRTFETSQSESVKRSEAKLESEHERDLDGSSRDSIAMDKERVDRDLGSVQGFEDVSKAERTESLEAGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDPQEEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQRLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKTTCQAPGQEKTEDSKLAPSSIQQELCVS", "length": 1571, "header": "tr|A0A9J7F2W0-1|A0A9J7F2W0_CRIGR Computationally mapped isoform of Zinc finger CCCH domain-containing protein 13 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zc3h13 PE=4 SV=1 CANONICAL=A0A8C2M6R7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1165, "start_aa": "Thr", "end_pos": 1165, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1165", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1169, "start_aa": "Thr", "end_pos": 1169, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1169", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753716", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753716", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AB32TJ25-1", "protein_name": "Zinc finger CCCH domain-containing protein 13 isoform X1", "gene_name": "zc3h13", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSKIRRKVTVENSKTISDSSSSTTTPSRRPSVFERLGPSTASNAAETHCRNWLKTGNCSYGNTCRYTHGTPSRGKGFSGTFNRSAERPTGDLRERMKNKRQDVDGDAPKRDADEPTSPTTRQRDSSRGRHREKEDIKITKERTPASEEETADWEASREDSDNGDYDYELSLEMKRQKIQRELMKLEQENMDKREEIIIKKEESVSKTRTGSSSKDRASPEHTSSKGSPSSRKSSGSPKHRGGKGGNPSKKEKKSSTSSVISSPVSDQTRAEETDSRSSKSGHGKRKGPRTPSPPPPVPVENPVVGKKHKNKHKNKDKSEDKTKEGKERGRDAEKHKEKKEKRRDRSDSSHKAKRSMTSEERSGSLSPPSREASPPARRKSSSPKPSSKQASQHRSRTPPRHRRSTSPSSRQQQSPSSQSGSSAQRHSPSPRHRRSSITPSASPPPTQSSRRSRSSITPQRDPSPASAPRRSSPSASHRSQGRERERERERDRDRGRAEQERSPAVQERRHERRDESRGKREKDSSRDERDYDIVQSSSREERDCRDSRDRRGERDRRDVREERQHRGDVKDTRDARAAETRERSGREPLEHRERDRDRERERERERERERTEMHRKEETMTQEERSYGRGHGREDMRNDARTDNRNESRVERTGRGRGHGSDVTEKARGSRASQADNSSASGHDSWESRSSGLRERSTERNTDRDRYDDRPRGEQPRDERRGAHNERDRRDNRERAEQRAPSPVRQQNRGEDLEREERRDDRRNDRGDDRRDDRTREREKERDREREREREREKEREREKEREREAERERERTREREREREREREEREREREEREREREERERERERERKEREREREQRERERQREWDEREKGREERRERRDESREDRPPRDAHEDRKNIRKRHRAENTPSPRPSPKRARDVSPPDSDGYNSTEEKSDKHRLLSQVVRPQETARSPVRSFTDEKHSRWKDEDRRVDKKDVRGRHEEVDSRGERAGRAAERRGEHASDVSVTGVPESRRGKEQRDLPSTALTPPMEERDALSAVHEETKKKTKTQKKNMKKNRKEDDGVSGGGDRSNPEPPISSTVAEAPPALLSPRKTPKKKALERKRKRSRGAESDVSEDELVTQQPLSKRRRGPRTPPPINKDDLPSQRALTAGQSSLPVKLDANFSDWSDEDVPERGETSTASMPSDRPPERLPPRRGARGGGRDRTDPPIAPLLPDPPMLMQSLPLQPLLPQHMLRKPQQADMQQQQRSSSMGSNQSRASSRRLRSPSNESAHRDDGPQGMRSRRGLLQGGNSRERDRERERERERERERDRDRERVVANEQMVGERKSRIDQLRRGEPSRSTSSDRQDSRSHSSRRSSPESERQARSRAGSYDSRERDRERDRDPLDREREKNRQLQNQQSQQREPEAREWGGRGREPLLRGNREPIRERDLREMRERERLLPEGLLAHERMDRERGERDRERDRDRMLPFDLQTHRDSKSRAEMKMDRAEYEPLLPREVLKDVEKPADNSHLQGEASEPEKMDSLDEEEDGKADDAQSVVSGGEEYEPISDDELDEILADSQKRDEQQDDEKTSGPLDVIDVDWSSLMPKQKQEPRTPGAALLRFTPGAVLLRAGVSRRLAGPQLLARIKEVCAREIEDPKDADKLLEHDLGALNMAAYNRRMERASLLRSLGPCCKALCARRDIAIRRQLLKNDKGTTKQIYTSAPVVDNELVQLSLRLFKKKMASTQSSGQDKTDSASAAQQLNTPTEMCVS", "length": 1760 }, "evidence": [ { "id": "A0A8C2M6R7", "url": "https://omabrowser.org/oma/group/A0A8C2M6R7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PSN4-1", "protein_name": "Zinc finger CCCH type containing 13", "gene_name": "Zc3h13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTTETQCRNWLKTGSCLYGNTCRFIHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDSESQKRNTEESSSPVRKESSRGRHRDKEDIKIVKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSPLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRNSKSNQSKKKGPRTPSPPPPILEDIILGKKYKEKYKVKDKIEEKPRDGKDRGRDFERQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPTHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREEARGKRDREKDTREERESEHDHRDDREPRDSRDRRDTRDRRELRDSRDMRDSREIRDYSRDTKESRDPRDSRSARDVHDYRDREARDAHARDVRDVRDARDARDVRDVRDVRDARDVRDVRDARDVRDARDVRDVRDVRDVRDTRDARDARDARDGHRKEDVYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPELPEKGGRSTRGSQMDSHSSGSNYHDSWETRSSYPERDRYPERDTRDQARDSSFERRHGERDRRDNRERDQRPSSPIRHQGRSEELEREERREERRIDRVDERRDERVRDRDRERERERERERDREREREREKERERELERERAREREREREKERERERERERDQRDRDHDREREREREREREKEREREERERERERERERERERERERERERERERERERAREREKERERQREWEDKDKGRDDRREKREDVHVREDRIPRDGHEERKSKKRYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWKEEERKSERKESSRRYEEQELKEKLSCGDRQREQTESVDGGSRARSAQDLLSHRQAEDRDRDGSDRAHDEKKKAKAPKKPVKKKREEDVGIERGNPETHEDSQVFSPKKGQKKKNIEKKRKRSKGDSDVSDEEAAPQSKKKRGPRTPPLAIKEELIEISTDKEGILEDPLKKEDTAFSDWSDEDVPDRTDGLEAEHTAAAATPGSTPSPMSSLLPPPPPVAAAGTAATALAASAISATTSTTISSSGATSNINASEDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSLGSNRSHRSHTSGRLRSPSNDSAHRSGDDQGGRKRVLHSGSRDREKTKSLELTGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDPRQREWDREADKEWPRTRDRDRLRERERDRDKRRDLDRERERLVADPMERDRERDRTFETSQLESVKRSEVKLESEHDRDLEGSSRDSVALDKERMDRDLGSAQGFEDVSKAERTESLEAGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDQQEEEKMPDPLDVIDVDWSGLMPKHRKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSGQQELCVS", "length": 1728 }, "evidence": [ { "id": "A0A8C2M6R7", "url": "https://omabrowser.org/oma/group/A0A8C2M6R7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q784-1", "protein_name": "Zinc finger CCCH domain-containing protein 13", "gene_name": "Zc3h13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTTETQCRNWLKTGSCLYGNTCRFIHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDSESQKRNTEEPSSPVRKESSRGRHRDKEDIKIVKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSPSLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRNSKGNQSKKKGPRTPSPPPPILEDIILGKKYKEKYKVKDRIEEKPRDGKDRGRDFEKQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPTHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREETRGKRDREKDTREERESEHDHRDDREPRDSRDRRDTRDRRELRDSRDMRDSREMRDYSRDAKESRDPRDSRSARDVHDYRDREARDAHARDVRDARDARDARDARDIRDVRDVRDVRDVRDVRDVRDVRDVRDVRDARDVRDVRDARDVRDVRDVRDGHRKEDVYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPELPEKGSRGTRGSQMDSHSSGSNYHDSWETRSSYPERDRYPERDTRDPARDSSFERRHGERDRRDNRERDQRPSSPIRHQGRSEELERDERREERRIDRVDERRDDRVRDRDRDREREREREREREREREKERERELERERAREREREREKERERERERERDQRDRDHDREREREREREREKEREREREERERERERERERERERERERERERERERERERAREREKERERQREWEDKDKGRDDRREKREDIHVREDRIPRDSHEERKSKKRYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWKEEDRKSERKESSRRYEEQELKEKLSCGDRQREQAESVDSSRVRAQDLLSHRQAEDRDRDGSDRAHDEKKKAKAPKKPVKKKKEEDVGVERGNLETHEDSQVFSPKKGQKKKNIEKKRKRSKGDSDVSDEEAAPQNKKKRGPRTPPLAIKEELADISTDKDGVLEDPLKKENTAFSDWSDEDVPDRTEGLEAEHTAATATPGSTPSPLSSLLPPPPPVAAASTAATALASSAVSATTSATSSSSAATSNTNGSEDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSLGSNRSHRSHTSGRLRSPSNDSAHRSGDDQGSRKRVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERDRRDPRQREWDREAEKEWPRTRDRDRLRERDRDRDRRRDLDRERERLISDPMERDRERERTFETSQLESGKRSEVKLESEHERDLEGSSRDSVALDKERMDRDLGSVQGFEDVSKAERTESLEGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDQQEEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQQLVEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSIQQELCVS", "length": 1729 }, "evidence": [ { "id": "A0A8C2M6R7", "url": "https://omabrowser.org/oma/group/A0A8C2M6R7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5T200-1", "protein_name": "Zinc finger CCCH domain-containing protein 13", "gene_name": "ZC3H13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSKIRRKVTVENTKTISDSTSRRPSVFERLGPSTGSTAETQCRNWLKTGNCLYGNTCRFVHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTEPQKRNTEESSSPVRKESSRGRHREKEDIKITKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMEKREEIIIKKEVSPEVVRSKLSPSPSLRKSSKSPKRKSSPKSSSASKKDRKTSAVSSPLLDQQRNSKTNQSKKKGPRTPSPPPPIPEDIALGKKYKEKYKVKDRIEEKTRDGKDRGRDFERQREKRDKPRSTSPAGQHHSPISSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREDTRGKRDREKDSREEREYEQDQSSSRDHRDDREPRDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSRDTKESRDPRDSRSTRDAHDYRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSRGRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFERRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRERERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRREHSPDSDAYNSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWKEEDRKPERKESSRRYEEQELKEKVSSVDKQREQTEILESSRMRAQDIIGHHQSEDRETSDRAHDENKKKAKIQKKPIKKKKEDDVGIERGNIETTSEDGQVFSPKKGQKKKSIEKKRKKSKGDSDISDEEAAQQSKKKRGPRTPPITTKEELVEMCNGKNGILEDSQKKEDTAFSDWSDEDVPDRTEVTEAEHTATATTPGSTPSPLSSLLPPPPPVATATATTVPATLAATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHRKCHRTRVEKVETPHVTIEDAQHRKPMDQKRSSSLGSNRSNRSHTSGRLRSPSNDSAHRSGDDQSGRKRVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDTRQREWDRDADKDWPRNRDRDRLRERERERERDKRRDLDRERERLISDSVERDRDRDRDRTFESSQIESVKRCEAKLEGEHERDLESTSRDSLALDKERMDKDLGSVQGFEETNKSERTESLEGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDQQDEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVMLRVGISKKLAGSELFAKVKETCQRLLEKPKDADNLFEHELGALNMAALLRKEERASLLSNLGPCCKALCFRRDSAIRKQLVKNEKGTIKQAYTSAPMVDNELLRLSLRLFKRKTTCHAPGHEKTEDNKLSQSSIQQELCVS", "length": 1668 }, "evidence": [ { "id": "A0A8C2M6R7", "url": "https://omabrowser.org/oma/group/A0A8C2M6R7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "RNA N6-methyladenosine methyltransferase complex", "id": "GO:0036396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036396", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of stem cell population maintenance", "id": "GO:2000036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000036", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1270, "end_pos": 1272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1286, "end_pos": 1288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 613, "end_pos": 615, "annotation": "n_glycosylation_sequon" }, { "start_pos": 617, "end_pos": 619, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6R7" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 64, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1165, 1169 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1270, "end_pos": 1272 }, { "start_pos": 1286, "end_pos": 1288 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 613, "end_pos": 615 }, { "start_pos": 617, "end_pos": 619 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 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"count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M718-1", "uniprot_ac": "A0A8C2M718", "uniprot_id": "A0A8C2M718_CRIGR", "mass": { "chemical_mass": 28395.0, "monoisotopic_mass": 28395.0 }, "refseq": { "ac": "XP_035308863", "name": "fibroblast growth factor 14 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308863" }, "gene_names": [ { "name": "Fgf14", "type": "recommended", "evidence": [ { "id": "A0A8C2M718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718" } ] }, { "name": "Fgf14", "type": "synonym", "evidence": [ { "id": "XP_035308863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308863" } ] } ], "protein_names": [ { "name": "Fibroblast growth factor", "type": "recommended", "evidence": [ { "id": "A0A8C2M718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718/entry#names_and_taxonomy" } ] }, { "name": "FGF", "type": "synonym", "evidence": [ { "id": "A0A8C2M718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718/entry#names_and_taxonomy" } ] }, { "name": "fibroblast growth factor 14 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308863" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308863", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308863" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M718", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fgf14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718", "locus": {} } ], "crossref": [ { "id": "cd23330", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23330", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762042", "url": "https://www.ncbi.nlm.nih.gov/gene/100762042", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762042", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KRINSPH", "url": "https://omabrowser.org/oma/group/KRINSPH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M718", "url": "https://www.orthodb.org/?gene=A0A8C2M718", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M8L3", "url": "https://www.orthodb.org/?gene=A0A8C2M8L3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11486", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11486", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00167", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00167", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308863", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308863", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M718", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M718-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8L3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8L3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8L3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8L3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKPVPLFRRTDFKLLLCNHKGLFFLRVSKLLGCFSPKSMWFLWNIFSKGTHMLQCLCGKSLKKNKNPTDPQLKGIVTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQVMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKAGVTPSKSTSASAIMNGGKQVNKCKTT", "length": 252, "header": "tr|A0A8C2M718-1|A0A8C2M718_CRIGR Isoform 1 of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf14 PE=3 SV=1 CANONICAL=A0A8C2M718-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M718-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718/entry", "sequence": { "sequence": "MVKPVPLFRRTDFKLLLCNHKGLFFLRVSKLLGCFSPKSMWFLWNIFSKGTHMLQCLCGKSLKKNKNPTDPQLKGIVTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQVMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKAGVTPSKSTSASAIMNGGKQVNKCKTT", "length": 252, "header": "tr|A0A8C2M718-1|A0A8C2M718_CRIGR Isoform 1 of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf14 PE=3 SV=1 CANONICAL=A0A8C2M718-1" }, "locus": {} }, { "isoform_ac": "A0A8C2M8L3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8L3/entry", "sequence": { "sequence": "MAAAIASGLIRQKRQAREQHWDRPSASRRRSSPSKNRGLCNGNLVDIFSKVRIFGLKKRRLRRQDPQLKGIVTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQVMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKAGVTPSKSTSASAIMNGGKQVNKCKTT", "length": 247, "header": "tr|A0A8C2M8L3-1|A0A8C2M8L3_CRIGR Computationally mapped isoform of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf14 PE=3 SV=1 CANONICAL=A0A8C2M718-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEF3/entry", "sequence": { "sequence": "MVKPVPLFRRTDFKLLLCNHKGLFFLRVSKLLGCFSPKSMWFLWNIFSKGTHMLQCLCGKSLKKNKNPTALFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQVMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKAGVTPSKSTSASAIMNGGKQVNKCKTT", "length": 215, "header": "tr|A0A9J7HEF3-1|A0A9J7HEF3_CRIGR Computationally mapped isoform of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf14 PE=3 SV=1 CANONICAL=A0A8C2M718-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M718", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M718", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762042", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762042", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1RP08-1", "protein_name": "Fibroblast growth factor", "gene_name": "FGF14", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAAAIASGLIRQKRQAREQHWDRPSASRRRSSPSKNRGLCNGNLVDIFSKVRIFGLKKRRLRRQDPQLKGIVTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQVMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKAGVTPSKSTSASAIMNGGKPVNKSKTT", "length": 247 }, "evidence": [ { "id": "A0A8C2M718", "url": "https://omabrowser.org/oma/group/A0A8C2M718/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P70379-1", "protein_name": "Fibroblast growth factor 14", "gene_name": "Fgf14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAIASGLIRQKRQAREQHWDRPSASRRRSSPSKNRGLFNGNLVDIFSKVRIFGLKKRRLRRQDPQLKGIVTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQVMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKAGVTPSKSTSASAIMNGGKPVNKCKTT", "length": 247 }, "evidence": [ { "id": "A0A8C2M718", "url": "https://omabrowser.org/oma/group/A0A8C2M718/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R5L7-1", "protein_name": "Fibroblast growth factor 14", "gene_name": "Fgf14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAIASGLIRQKRQAREQHWDRPSASRRRSSPSKNRGLCNGNLVDIFSKVRIFGLKKRRLRRQDPQLKGIVTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQVMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKAGVTPSKSTSASAIMNGGKPVNKCKTT", "length": 247 }, "evidence": [ { "id": "A0A8C2M718", "url": "https://omabrowser.org/oma/group/A0A8C2M718/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q92915-1", "protein_name": "Fibroblast growth factor 14", "gene_name": "FGF14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAIASGLIRQKRQAREQHWDRPSASRRRSSPSKNRGLCNGNLVDIFSKVRIFGLKKRRLRRQDPQLKGIVTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEGYLYPSELFTPECKFKESVFENYYVIYSSMLYRQQESGRAWFLGLNKEGQAMKGNRVKKTKPAAHFLPKPLEVAMYREPSLHDVGETVPKPGVTPSKSTSASAIMNGGKPVNKSKTT", "length": 247 }, "evidence": [ { "id": "A0A8C2M718", "url": "https://omabrowser.org/oma/group/A0A8C2M718/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M718", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M718" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M748-1", "uniprot_ac": "A0A8C2M748", "uniprot_id": "A0A8C2M748_CRIGR", "mass": { "chemical_mass": 46360.0, "monoisotopic_mass": 46360.0 }, "refseq": { "ac": "XP_003510529", "name": "WAS/WASL-interacting protein family member 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510529" }, "gene_names": [ { "name": "Wipf2", "type": "recommended", "evidence": [ { "id": "A0A8C2M748", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748" } ] }, { "name": "Wipf2", "type": "synonym", "evidence": [ { "id": "XP_003510529", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510529" } ] } ], "protein_names": [ { "name": "WAS/WASL-interacting protein family member 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003510529", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510529" }, { "id": "A0A8C2M748", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614892.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510529", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510529" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M748", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wipf2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748", "locus": {} } ], "crossref": [ { "id": "100771618", "url": "https://www.ncbi.nlm.nih.gov/gene/100771618", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771618", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771618", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QWQHNAT", "url": "https://omabrowser.org/oma/group/QWQHNAT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M748", "url": "https://www.orthodb.org/?gene=A0A8C2M748", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF02205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003510529", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510529", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M748", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M748-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9L6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9L6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTEQPKLSRDEQRNRGALLQDICKGTKLKKVTNINDRSAPVIEKPKGSGGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDASETLAGKTALQVPSSRAAAPRPPVSTAGGRPQDDSDSSRASLPELPRMQRPSLPDLSRPNTTSGTGMKHSSSAPPPPPPGRRANAPPTPLPLHNSKAQAYNREKPLPPTPGQRLHPSREGHPAPPPVKPPPSPVNIRSGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPFLLSNRPPPPARDPPSRGAAPPPPPPMVRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHLQRVYPSKTNRAARGAPPLPPILR", "length": 440, "header": "tr|A0A8C2M748-1|A0A8C2M748_CRIGR Isoform 1 of WAS/WASL-interacting protein family member 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wipf2 PE=4 SV=1 CANONICAL=A0A8C2M748-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M748-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748/entry", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTEQPKLSRDEQRNRGALLQDICKGTKLKKVTNINDRSAPVIEKPKGSGGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDASETLAGKTALQVPSSRAAAPRPPVSTAGGRPQDDSDSSRASLPELPRMQRPSLPDLSRPNTTSGTGMKHSSSAPPPPPPGRRANAPPTPLPLHNSKAQAYNREKPLPPTPGQRLHPSREGHPAPPPVKPPPSPVNIRSGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPFLLSNRPPPPARDPPSRGAAPPPPPPMVRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHLQRVYPSKTNRAARGAPPLPPILR", "length": 440, "header": "tr|A0A8C2M748-1|A0A8C2M748_CRIGR Isoform 1 of WAS/WASL-interacting protein family member 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wipf2 PE=4 SV=1 CANONICAL=A0A8C2M748-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9L6/entry", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTEQPKLSRDEQRNRGALLQDICKGTKLKKVTNINDRSAPVIEKPKGSGGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDASETLAGKTALQVPSSRAAAPRPPVSTAGGRPQDDSDSSRASLPELPRMQRPSLPDLSRPNTTSGTGMKHSSSAPPPPPPGRRANAPPTPLPLHNSKAQAYNREKPLPPTPGQRLHPSREGHPAPPPVKPPPSPVNIRSGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPFLLSNRPPPPARDPPSRGAAPPPPPPMVRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHLQRVYPSKTNRGARG", "length": 431, "header": "tr|A0A9J7G9L6-1|A0A9J7G9L6_CRIGR Computationally mapped isoform of WAS/WASL-interacting protein family member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wipf2 PE=4 SV=1 CANONICAL=A0A8C2M748-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 212, "start_aa": "Thr", "end_pos": 212, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr212", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 300, "start_aa": "Thr", "end_pos": 300, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr300", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M748", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M748", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M748" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771618", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771618", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PJQ6-1", "protein_name": "WAS/WASL interacting protein family member 2", "gene_name": "WIPF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFSQANTEPPKLSREEQRGRGALLQDICKGTKLKKVTQINDRSAPILEKPKGGSGSSYGSSSAAIQPKGGLFQGGVPKLRPVGAKDSSDSSGKQTLQVPGSRAAAPRPPVPASNSRPQDDSDNSRASPPELPRTQRPSLPDLSRPGTAGGTGMKHSSSAPPPPPPGRRATAPPAPPPAHGPKVSSYNREKPLPPTPGQRAPAGRDGPPAPPPVKPPPSPVSIRTGSGAQSQSLAPPPPPYRQPPSVPNGPSSPITESAPELPQRHNSLHRKTPGPLRGLAPPPPASASPSLQSSRPPPPARDPPSRGAAPPPPPPMLRNGGRDAPPPPPPYRLHGSTEPPSRGKPPPPPTRTPAGPPPPPPPVRNGHRDSIATVRAFLDDFESKYSFHPVEDFPAPEEYKYFQRIYPSKTNRATRGAPPLPPIPR", "length": 442 }, "evidence": [ { "id": "A0A8C2M748", "url": "https://omabrowser.org/oma/group/A0A8C2M748/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1RXC5-1", "protein_name": "WAS/WASL interacting protein family member 2", "gene_name": "WIPF2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTELPKLSRDEQRGRGALLQDICKGTKLKKVTNINDRSAPILEKPKGSSGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDGSENLAGKPALQVPSSRAAAPRPPVSTASGRPQDDTDSNRASLPELPRTQRPSLPDLSRPHATSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSNKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLQSNRPPPPARDPPSRGAAPPPPPPMIRNGARDAPPPPPPYRMHGSEPLSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHFQRVYPSKTNRAARGAPPLPPILR", "length": 440 }, "evidence": [ { "id": "A0A8C2M748", "url": "https://omabrowser.org/oma/group/A0A8C2M748/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6PEV3-1", "protein_name": "WAS/WASL-interacting protein family member 2", "gene_name": "Wipf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.ncbi.nlm.nih.gov/protein/XP_027267265" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267265", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267265" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7D9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772531", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9", "locus": {} } ], "crossref": [ { "id": "100772531", "url": "https://www.ncbi.nlm.nih.gov/gene/100772531", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772531", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772531", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M7D9", "url": "https://www.orthodb.org/?gene=A0A8C2M7D9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12661", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12661", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12661:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12661:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04427", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04427", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267265", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267265", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M7D9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M7D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQSGRSRHQKRARAQAQLRNLEAYAAQPHSFVFTRGRAGRSVQQLSQDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTDSSVYLKLMRLPGGPTLTFQINKYTLVRDVVSSLRRHRMHEQQFNHPPLLVLNSFSPQGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSIKVVPVGASRGMKKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGEHNITELPQAVAGRGNMQAQQSAIRLTEIGPRMTLQLIKIQEGVGNGNVLFHSFVHKTEEELQAILAAKEEKLQLKAQRQNQQAENLERKRELREAHKKKSLAGMKRARTRTDGDSDAEDPGAPLEAVGAGRLEEEEEDDAEYFRQAVGEEPDEDMFPRVAKRRRQGGPPGKKQQEKKQRPVSGRGQGGNWRPPKPKGRSQGVKTKLGPRATRRNLGQPSRRT", "length": 469, "header": "tr|A0A8C2M7D9-1|A0A8C2M7D9_CRIGR Isoform 1 of Suppressor of SWI4 1 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772531 PE=4 SV=1 CANONICAL=A0A8C2M7D9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M7D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9/entry", "sequence": { "sequence": "MGQSGRSRHQKRARAQAQLRNLEAYAAQPHSFVFTRGRAGRSVQQLSQDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTDSSVYLKLMRLPGGPTLTFQINKYTLVRDVVSSLRRHRMHEQQFNHPPLLVLNSFSPQGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSIKVVPVGASRGMKKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGEHNITELPQAVAGRGNMQAQQSAIRLTEIGPRMTLQLIKIQEGVGNGNVLFHSFVHKTEEELQAILAAKEEKLQLKAQRQNQQAENLERKRELREAHKKKSLAGMKRARTRTDGDSDAEDPGAPLEAVGAGRLEEEEEDDAEYFRQAVGEEPDEDMFPRVAKRRRQGGPPGKKQQEKKQRPVSGRGQGGNWRPPKPKGRSQGVKTKLGPRATRRNLGQPSRRT", "length": 469, "header": "tr|A0A8C2M7D9-1|A0A8C2M7D9_CRIGR Isoform 1 of Suppressor of SWI4 1 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772531 PE=4 SV=1 CANONICAL=A0A8C2M7D9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A8C2M7D9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7D9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7D9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9" } ], "pmid": "" }, { "name": "ribosomal large subunit assembly", "id": "GO:0000027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000027", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7D9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7D9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M7F6-1", "uniprot_ac": "A0A8C2M7F6", "uniprot_id": "A0A8C2M7F6_CRIGR", "mass": { "chemical_mass": 64087.0, "monoisotopic_mass": 64087.0 }, "refseq": { "ac": "XP_003508010", "name": "uncharacterized protein C2orf42 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508010" }, "gene_names": [ { "name": "C8H2orf42", "type": "recommended", "evidence": [ { "id": "A0A8C2M7F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" } ] }, { "name": "C8H2orf42", "type": "synonym", "evidence": [ { "id": "XP_003508010", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508010" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C2orf42 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2M7F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C2orf42 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003508010", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508010" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614461.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508010", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508010" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7F6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C8H2orf42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6", "locus": {} } ], "crossref": [ { "id": "100770743", "url": "https://www.ncbi.nlm.nih.gov/gene/100770743", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060076", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060076", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770743", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770743", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FWMPSQL", "url": "https://omabrowser.org/oma/group/FWMPSQL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M7F6", "url": "https://www.orthodb.org/?gene=A0A8C2M7F6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GF08", "url": "https://www.orthodb.org/?gene=A0A9J7GF08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GFT0", "url": "https://www.orthodb.org/?gene=A0A9J7GFT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GK70", "url": "https://www.orthodb.org/?gene=A0A9J7GK70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13518", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13518", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13518:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13518:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14952", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14952", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26708", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26708", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508010", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508010", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M7F6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M7F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GK70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSIEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRVTKSIMVVKCKASQKHSLGYLHTSFMQKIGSRSLPERRFFCSCQSLKSHKSNIPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGLKEVMVPQLGCHSESSVSACESAASKPRKRKKDEMSGAQVNSSLMPQDTVNSIVRKSALKKPVVASSLKRQVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPLDQPLELAPLTTITFP", "length": 574, "header": "tr|A0A8C2M7F6-1|A0A8C2M7F6_CRIGR Isoform 1 of Uncharacterized protein C2orf42 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C8H2orf42 PE=4 SV=1 CANONICAL=A0A8C2M7F6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M7F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6/entry", "sequence": { "sequence": "MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSIEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRVTKSIMVVKCKASQKHSLGYLHTSFMQKIGSRSLPERRFFCSCQSLKSHKSNIPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGLKEVMVPQLGCHSESSVSACESAASKPRKRKKDEMSGAQVNSSLMPQDTVNSIVRKSALKKPVVASSLKRQVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPLDQPLELAPLTTITFP", "length": 574, "header": "tr|A0A8C2M7F6-1|A0A8C2M7F6_CRIGR Isoform 1 of Uncharacterized protein C2orf42 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C8H2orf42 PE=4 SV=1 CANONICAL=A0A8C2M7F6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GF08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF08/entry", "sequence": { "sequence": "MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSIEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRVTKSIMVVKCKASQKHSLGYLHTSFMQKIGSRSLPERRFFCSCQSLKSHKSNIPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGLKEVMVPQLGCHSESSVSACESAASKPRKRKKDEMSGAQVNSSLMPQDTVNSIVRKSALKKPVVASSLKRQVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPLDQPLELAPLTTITFP", "length": 538, "header": "tr|A0A9J7GF08-1|A0A9J7GF08_CRIGR Computationally mapped isoform of Uncharacterized protein C2orf42 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=C8H2orf42 PE=4 SV=1 CANONICAL=A0A8C2M7F6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFT0/entry", "sequence": { "sequence": "MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSIEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRVTKSIMVVKCKASQKHSLGYLHTSFMQKIGSRSLPERRFFCSCQSLKSHKSNIPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGLKEVMVPQLGCHSESSVSACESAASKPRKRKKDEMSGAQVNSSLMPQDTVNSIVRKSALKKPVVASSLKRQVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEVTHPLIKRSQHPLSLSGSLTSFRNPRLVSFESSLSMATTGMDMWLTTKTRDHLWTSLWSWPL", "length": 513, "header": "tr|A0A9J7GFT0-1|A0A9J7GFT0_CRIGR Computationally mapped isoform of Uncharacterized protein C2orf42 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=C8H2orf42 PE=4 SV=1 CANONICAL=A0A8C2M7F6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK70/entry", "sequence": { "sequence": "MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRVTKSIMVVKCKASQKHSLGYLHTSFMQKIGSRSLPERRFFCSCQSLKSHKSNIPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGLKEVMVPQLGCHSESSVSACESAASKPRKRKKDEMSGAQVNSSLMPQDTVNSIVRKSALKKPVVASSLKRQVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPLDQPLELAPLTTITFP", "length": 537, "header": "tr|A0A9J7GK70-1|A0A9J7GK70_CRIGR Computationally mapped isoform of Uncharacterized protein C2orf42 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=C8H2orf42 PE=4 SV=1 CANONICAL=A0A8C2M7F6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7F6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7F6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770743", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770743", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1SLC8-1", "protein_name": "Chromosome 3 C2orf42 homolog", "gene_name": "C2orf42", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEPNSLRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSAEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGVVENQCQHIKLAVNCQTEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRITKNILVVKCKASQKHSLGYLHTSFMQKISAKSLPERRFFCSCQTLKSHKSNASKDEAVQRCIHFFACICAFASDETLAQEFSDFLNFDSSGLKEIIVPQLGCHSESTVSACESTASKPKKRKKEEVSGAQTNSSMLPQDAVNSNLRKSGLKKPVVASSLKRQACGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVAEYQDQRPPLDQPLELAPLTTITFP", "length": 574 }, "evidence": [ { "id": "A0A8C2M7F6", "url": "https://omabrowser.org/oma/group/A0A8C2M7F6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q3SYX3-1", "protein_name": "Uncharacterized protein C2orf42 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPNSLRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSVEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGVVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRITKNILVVKCKASQKHSLGYLHTSFVQKIGAKSLPERRFFCSCQTLKSHKSNASKDEAVQRCIHFFACICAFASDETLAQEFSDFLNFDSSGLKEVIVPQLGCHSESPVSACESTASKPKKRKKEEVSGAQTNSSLLPPDTVSSNLRKSGLKKPVVASSLKRQACGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFIRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVAEYQDQRPPLDQPLELAPLTTITFP", "length": 574 }, "evidence": [ { "id": "A0A8C2M7F6", "url": "https://omabrowser.org/oma/group/A0A8C2M7F6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R3C1-1", "protein_name": "Uncharacterized protein C2orf42 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTFNGTRGLSCKNKTCGTIFRYGARKQPSIEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETAIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVTCQAEATPLTLKSSVLNALQAAPETKQSLWQLATEPTGPLVQRVTKNIMVVKCKASQKHNLGYLHASFMQKISSRSLPERRFFCSCQTLRPHKSSVPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGLKEIIVPHLGCHAESSVSACESAASKPRKRKKDEVSGAQVNSSLMPQDAVNSNLRKSGLKRPVVTSSLKRHVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVENIAESYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPMDQPLELAPLTTITFP", "length": 574 }, "evidence": [ { "id": "A0A8C2M7F6", "url": "https://omabrowser.org/oma/group/A0A8C2M7F6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NWW7-1", "protein_name": "Uncharacterized protein C2orf42", "gene_name": "C2orf42", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPNSLRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSVEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGVVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRITKNILVVKCKASQKHSLGYLHTSFVQKVSGKSLPERRFFCSCQTLKSHKSNASKDETAQRCIHFFACICAFASDETLAQEFSDFLNFDSSGLKEIIVPQLGCHSESTVSACESTASKSKKRRKDEVSGAQMNSSLLPQDAVSSNLRKSGLKKPVVASSLKRQACGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVAEYQDQRPPLDQPLELAPLTTITFP", "length": 574 }, "evidence": [ { "id": "A0A8C2M7F6", "url": "https://omabrowser.org/oma/group/A0A8C2M7F6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VAL2-1", "protein_name": "Treble-clef zinc-finger domain-containing protein", "gene_name": "Dmel\\CG2321", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRGVRKCVHCGAINGNRALLCKNSECPQRRNVLDAVQLVSLRPGSTVYSLRTKEKEQQPRNFVVIQDVTLSLQPDAAVVSSKAECFVESCKRTGGEPTDCVHVKACRELGAEFAKAQVYRVSREVLWNLNISLEQKQNLWQLYKYAEEEEHLPGVQRLNHSTFAVKCERSESFPAARLHVTVSANGLSKKKSSYACACRKLKIIVEPDNSLVMQDEICDHLLLVLAGILSSPQGKRVYGHFTSGLQTFWMPLQLETPLGDVATEDLRLSLDMVDELDPQVDILVFGDQLDLSLPNLSDGVFNLDTMQAATSSQSASSTNDALIHYANDSQLLSNLDVYAEPIELTDCNIELMDQFQPTDQLDICSEDIELPLISEPYNILAAPPIFTEATPSVVADQLPIELATISMVKKAPVKFSEIVTEVKSLKQPSLPAKRELIVNGAASAASACLDASVQPALSYSAWLDHVIELLNDSCEPLETESNTLTKRLVQQNFHVHKETFSHFCKSFSTGVKRRPLDKLTVIESGKHKGLSKYTWHFASPHTAKRIFSTSNVQLQLDRAFERHAEGHFVPYVRPPMEPQVPGQPKKRIVYPRLSLYMVKILFEAAPKDYVGNGVLVTWTPDVLPRSQFGLMHVEFTVETRPPR", "length": 643 }, "evidence": [ { "id": "A0A8C2M7F6", "url": "https://omabrowser.org/oma/group/A0A8C2M7F6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7F6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7F6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M7F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" }, { "id": "PF26708", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26708" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2orf42 C-terminal", "eco_id": "ECO_0000259", "start_pos": 361, "end_pos": 548, "start_aa": "Phe", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2M7F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7F6" }, { "id": "PF14952", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14952" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Putative treble-clef zinc-finger", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 56, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 316, "end_pos": 318 }, { "start_pos": 35, "end_pos": 37 }, { "start_pos": 414, "end_pos": 416 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 507, "end_pos": 509 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M7H0-1", "uniprot_ac": "A0A8C2M7H0", "uniprot_id": "A0A8C2M7H0_CRIGR", "mass": { "chemical_mass": 17668.0, "monoisotopic_mass": 17668.0 }, "refseq": { "ac": "XP_007639273", "name": "IQ domain-containing protein F5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639273" }, "gene_names": [ { "name": "LOC100766585", "type": "recommended", "evidence": [ { "id": "A0A8C2M7H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0" } ] }, { "name": "LOC100766585", "type": "synonym", "evidence": [ { "id": "XP_007639273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639273" } ] } ], "protein_names": [ { "name": "IQ domain-containing protein F5", "type": "synonym", "evidence": [ { "id": "XP_007639273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639273" }, { "id": "A0A8C2M7H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613788.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007639273.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639273" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7H0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766585", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0", "locus": {} } ], "crossref": [ { "id": "100766585", "url": "https://www.ncbi.nlm.nih.gov/gene/100766585", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766585", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766585", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YWRWHIC", "url": "https://omabrowser.org/oma/group/YWRWHIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M7H0", "url": "https://www.orthodb.org/?gene=A0A8C2M7H0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21633", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21633", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21633:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21633:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639273", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M7H0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M7H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPEENTAMTQTSAAVLIQAWWRGTLLRRSLLSAALNAWIIQSWWRKILLKVREKRRQAALQLYAQKTWATVTLQSWFRMWRIRQRYCRLLNAVRIIQVYWRWHSCHTRGFIQGDYEIKENHLNIQLEISLGSQACKVQQCITLPIKE", "length": 148, "header": "tr|A0A8C2M7H0-1|A0A8C2M7H0_CRIGR Isoform 1 of IQ domain-containing protein F5 OS=Cricetulus griseus OX=10029 GN=LOC100766585 PE=4 SV=1 CANONICAL=A0A8C2M7H0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M7H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0/entry", "sequence": { "sequence": "MGPEENTAMTQTSAAVLIQAWWRGTLLRRSLLSAALNAWIIQSWWRKILLKVREKRRQAALQLYAQKTWATVTLQSWFRMWRIRQRYCRLLNAVRIIQVYWRWHSCHTRGFIQGDYEIKENHLNIQLEISLGSQACKVQQCITLPIKE", "length": 148, "header": "tr|A0A8C2M7H0-1|A0A8C2M7H0_CRIGR Isoform 1 of IQ domain-containing protein F5 OS=Cricetulus griseus OX=10029 GN=LOC100766585 PE=4 SV=1 CANONICAL=A0A8C2M7H0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7H0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7H0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766585", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766585", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A8MTL0-1", "protein_name": "IQ domain-containing protein F5", "gene_name": "IQCF5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGPEEKTIMTERSAAVFIQAWWRGMLVRRTLLHAALRAWIIQCWWRQVLEKLLAKRRRMVLEFYVQQEWAAVRLQSWVRMWCVRQRYCRLLNAVRIIQVYWRWHSCHSRVFIEGHYELKENQLNIQLEISLGLQACKVQQCIPLPLKE", "length": 148 }, "evidence": [ { "id": "A0A8C2M7H0", "url": "https://omabrowser.org/oma/group/A0A8C2M7H0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZE78-1", "protein_name": "IQ motif containing F5", "gene_name": "Iqcf5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGPEETTALTEKSAAVRIQAWWRGTLLRRSLLHAALNAWIIQCWWRKTMMTMQGKKRRMALELYVRKTWAIVKLQSCFRMWHIRQRYCRLLNAVRIIQVYWRWHSCHTRGFIRGNYEIKENRLNIQLEISLGSQACKVEQCITLPIKE", "length": 148 }, "evidence": [ { "id": "A0A8C2M7H0", "url": "https://omabrowser.org/oma/group/A0A8C2M7H0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q32KU4-1", "protein_name": "IQ domain-containing protein F5", "gene_name": "IQCF5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPKVRIMRKEENKAIVSIQAWWRGTLVRRTLLHAALRAWIIQCWWKQKLVLLMENRRRVALDAFARQEWAVVKLQSWVRMWCIRLRYLRLLHAVRIIQVYWRWHSCHTRGFIQGHYDLKENQLNLQLEISLGSQACRVQQCIPLPIKE", "length": 149 }, "evidence": [ { "id": "A0A8C2M7H0", "url": "https://omabrowser.org/oma/group/A0A8C2M7H0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9DAL7-1", "protein_name": "IQ domain-containing protein F5", "gene_name": "Iqcf5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPEKSTAMTETSAAVRIQAWWRGTLLRRTLLHAALSAWIIQCWWRKIMIMLQGKKRRMALELYARKTWAIVKLQSWFRMWHIRHRYCRLLNAVRIIQVYWRWHSCHTRGFIQGNYEIKENRLNIQLEISLGSQACKVEQCITLPIKE", "length": 148 }, "evidence": [ { "id": "A0A8C2M7H0", "url": "https://omabrowser.org/oma/group/A0A8C2M7H0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7H0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7H0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], 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"categories": [ "Protein Classification" ] }, { "id": "PTHR13608:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13608:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08427", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08427", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508106", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508106", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M7P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMQMKDNVNCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAPEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVRPTPPTPVTPLGTTPPSSDVISSVELSLDADVQTSNLLIAFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNIPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFALALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAAGKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 689, "header": "tr|A0A8C2M7P7-1|A0A8C2M7P7_CRIGR Isoform 1 of Armadillo-like helical domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Armh3 PE=4 SV=1 CANONICAL=A0A8C2M7P7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M7P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMQMKDNVNCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAPEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVRPTPPTPVTPLGTTPPSSDVISSVELSLDADVQTSNLLIAFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNIPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFALALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAAGKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 689, "header": "tr|A0A8C2M7P7-1|A0A8C2M7P7_CRIGR Isoform 1 of Armadillo-like helical domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Armh3 PE=4 SV=1 CANONICAL=A0A8C2M7P7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FMH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMH7/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMQMKDNVNCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAPEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVRPTPPTPVTPLGTTPPSSDVISSVELSLDADVQTSNLLIAFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNIPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFALALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAAGKVTHALVNIRVSLCTFDCPRLLHVDQAGFNS", "length": 615, "header": "tr|A0A9J7FMH7-1|A0A9J7FMH7_CRIGR Computationally mapped isoform of Armadillo-like helical domain-containing protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Armh3 PE=4 SV=1 CANONICAL=A0A8C2M7P7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPF3/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMQMKDNVNCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAPEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVRPTPPTPVTPLGTTPPSSDVISSVELSLDADVQTSNLLIAFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNIPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFALALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAAGKVTHALVNISLTFSRGGKPTLHGILERKQLIACS", "length": 618, "header": "tr|A0A9J7FPF3-1|A0A9J7FPF3_CRIGR Computationally mapped isoform of Armadillo-like helical domain-containing protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Armh3 PE=4 SV=1 CANONICAL=A0A8C2M7P7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPI9/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMQMKDNVNCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAPEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVRPTPPTPVTPLGTTPPSSDVISSVELSLDADVQTSNLLIAFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEPMRHRKKAADKNIPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFALALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAAGKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 667, "header": "tr|A0A9J7FPI9-1|A0A9J7FPI9_CRIGR Computationally mapped isoform of Armadillo-like helical domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Armh3 PE=4 SV=1 CANONICAL=A0A8C2M7P7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 333, "start_aa": "Thr", "end_pos": 333, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr333", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 336, "start_aa": "Thr", "end_pos": 336, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr336", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 544, "start_aa": "Thr", "end_pos": 544, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr544", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753840", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5YBM4-1", "protein_name": "Armadillo-like helical domain containing 3", "gene_name": "Armh3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVSPTPTTPATPLGTTPPSSDVISSVELSLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLTLMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYCMVLRLSTNAGQWKEAASKVTHALVNIRAIVSHFTPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 689 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NK09-1", "protein_name": "Armadillo like helical domain containing 3", "gene_name": "ARMH3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAQTEKKGGLLRKSSASKKPLKEKVVLMYDEIFTTEDPSKSNPRFWEELFLMKVNLEYLEGKLEALDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLVGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSSPLSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADADEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLMTTPASPIPTTPVTPLGTTPPSSDVISSAELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYIRCIQIVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMVVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQNFDNLYSMVLRISTNAGQWKEPASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEDQVLEVVRSNYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISINVRKNLAFNTLSQELLLKEFSTIS", "length": 689 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1S8T4-1", "protein_name": "Armadillo like helical domain containing 3", "gene_name": "ARMH3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 689 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q551U4-1", "protein_name": "Armadillo-like helical domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIDKNVEQSSNKVEYNQPKSPITSILVNNNSSNNNNNSNNKNNNNEEEFDISSPLTLSPIANCGASGSNIDSSIDNTPHLLSQISTPPISSTSSITLLNDKKKGIYSTFLDLDYYNNTYLKNKQKILQPKLNQQKQQQQQQQQQPKTLTFSLDSQQQQQQQPQLQSPQLIDQQQQQQQQQQQQQQQQQQQQQQIPYHQRKHHISIRDGDDNDNEVDSFNILSQNQLIHQTFNNPQNHHYFSSTSPSLLYHHQQQTQLEQKPIYSSSSSSSILSSLSSSTISFYNSITSLFLTFPQTISTDPIIIREYERLKMLQEQQVGPRHTEILLRKEDGVGGRKALKEKFVEIYESFFNGEDPSENQPIFWEQLFLIKVNIPFLERCIILTSEENLLALKQNINKIFTQSCFWLKDSNSLRLTHIIETLSILLKSIFRKKFNNFGFDILNILCGIENSDQVFTDMIKDLEQLLKNSSIDKKVKIGVINLFTIIATATEYINQNTLLQYFMSVNIFDTLVTFLGEDDIPKQTQLNILTLLCYFSNFQKYEITNPYLKDLSNLSDPIKILKILNLITQNLKDHNEFFEQQYRDPNLGMVSRFSGYLSSWVYSPKVVQPLSFYETGSSLMILYELFYQNDHFVNMLVKGGLPFANGGENGSTCPDIIKQFFSFCAYLASDAQKDLKTIYSRMALLILLCICEKRELEDFFHDIKSTCYIFIYSKKSLFSDPKETEKHPLSCWTLDILSQFIKCNLKGKISMDVHQSAVDCIHRIVSYKKKTLNRLPYKWSELWSALFSLISMVSTLNISNDKIQLNQSIHVGISTVNIFNLFINYGDSFLPSPNDYDELFYEIIRSGQVIENFYQFILNQTTTGGQSVTSPSAAASASNPTTPTPLSPQQLPTITTTTTTITSNNESNNPLLNQLLNIRSIVQHFTSKLEEWSANNAEVALTAPQVSKIIKDNYDTLRLKLQENLDQFEPYVENPKEVLFFKHIIKELINDLRKQINVTNII", "length": 1003 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5T2E6-1", "protein_name": "Armadillo-like helical domain-containing protein 3", "gene_name": "ARMH3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVSPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYIRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 689 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PD19-1", "protein_name": "Armadillo-like helical domain-containing protein 3", "gene_name": "Armh3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKLSVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTAPASPTPTTPATPLGTTPPSSDVISSVELSLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYLRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 689 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PGW3-1", "protein_name": "Armadillo-like helical domain-containing protein 3", "gene_name": "armh3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAQTEKKAGLLRRTSSSKKPLKEKVVLMYDEIFMKEDPTKNSPRFWDELFLMKVNLEYLEGKLESLDGDEFMKIKDNINSLFHHCVQALAEEHQIKVVNALQTLCALFRGVHQKNKSATGFDIINMLIGFDKAELRMKELMESLDSLLCGDGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSDVSSRSQHGYDSVVLLALLVNYRKYESVNPYIVKLSIVDDEPTLDGLGMVIHHALTEYNRQYKEKEEENQGGFFSTLSSMVGSMFIADADEKLSVQTNEAILLALYEAVHLNRNFITVLAQSHPEIDMAATPATPVPASPTTPLGTTPPSLDLMNNPELPLDPNLQTSNLLITFLKYSSIVMQDTKDEHRLNSARLCLIILTCIAEDQYADAFLHDDNMNFRVNLHRMPMRHRKKAADKNIPCRPLVCAVLDLMVEFVVTHMMKEFPMDLYVRCVQIIHKLICYQKKCRVRLHYTWRELWSALINLLKFLLSNETGLLAKHNIFQLALQVVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQVFDNLYCMVLRVSTNAGQWKEPASKVTHALVNVRAIINHFNPKIESYAAVNHISQLSEDQVLEVVRSNYDTLTLKLQDGLDQFERYSEQPREAGFFKELVRSISLNVRKNVSLTTMSQDVLLKEFSSIS", "length": 689 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7KSU3-1", "protein_name": "Armadillo-like helical domain-containing protein", "gene_name": "Dmel\\CG8379", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNFEALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTEDHPKRLCNSLHTLCSLFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPENARFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQHGHDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDFCRQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLALYEAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQYPTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMHDSNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKKFPMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQTLVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVFTEIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQGLSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRDVVNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEAKALPSFA", "length": 707 }, "evidence": [ { "id": "A0A8C2M7P7", "url": "https://omabrowser.org/oma/group/A0A8C2M7P7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of Golgi organization", "id": "GO:1903358", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903358", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7P7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M7P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7P7" }, { "id": "SM01158", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Armadillo-like helical", "eco_id": "ECO_0000259", "start_pos": 435, "end_pos": 671, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 333, 336, 544 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 }, { "start_pos": 173, "end_pos": 175 }, { "start_pos": 510, "end_pos": 512 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M7Q0-1", "uniprot_ac": "A0A8C2M7Q0", "uniprot_id": "A0A8C2M7Q0_CRIGR", "mass": { "chemical_mass": 11754.0, "monoisotopic_mass": 11754.0 }, "refseq": { "ac": "XP_027264884", "name": "uncharacterized protein C10orf143 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264884" }, "gene_names": [ { "name": "CUNH10orf143", "type": "recommended", "evidence": [ { "id": "A0A8C2M7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0" } ] }, { "name": "CUNH10orf143", "type": "synonym", "evidence": [ { "id": "XP_027264884", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264884" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C10orf143 homolog", "type": "synonym", "evidence": [ { "id": "A0A8C2M7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C10orf143 homolog", "type": "synonym", "evidence": [ { "id": "XP_027264884", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264884" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264884", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264884" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7Q0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH10orf143", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0", "locus": {} } ], "crossref": [ { "id": "cge:100768182", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768182", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M7Q0", "url": "https://www.orthodb.org/?gene=A0A8C2M7Q0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027264884", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264884", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M7Q0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M7Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSLAPGRWRRRRTEEISAAGDAKRACRRSEAGGHEYNSHMVSTCTLLSWSTEDQEPWPPGQPAPRPACSQERLSSVVLQNGGRNSAQPCLRCIAGESGHFNHTGNH", "length": 107, "header": "tr|A0A8C2M7Q0-1|A0A8C2M7Q0_CRIGR Isoform 1 of Uncharacterized protein C10orf143 homolog OS=Cricetulus griseus OX=10029 GN=CUNH10orf143 PE=4 SV=1 CANONICAL=A0A8C2M7Q0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M7Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0/entry", "sequence": { "sequence": "MDSLAPGRWRRRRTEEISAAGDAKRACRRSEAGGHEYNSHMVSTCTLLSWSTEDQEPWPPGQPAPRPACSQERLSSVVLQNGGRNSAQPCLRCIAGESGHFNHTGNH", "length": 107, "header": "tr|A0A8C2M7Q0-1|A0A8C2M7Q0_CRIGR Isoform 1 of Uncharacterized protein C10orf143 homolog OS=Cricetulus griseus OX=10029 GN=CUNH10orf143 PE=4 SV=1 CANONICAL=A0A8C2M7Q0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7Q0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M7Q0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7Q0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768182", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768182", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257896", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257896" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M835", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M835" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cep85l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M835", "locus": {} } ], "crossref": [ { "id": "100763810", "url": "https://www.ncbi.nlm.nih.gov/gene/100763810", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763810", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763810", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M835", "url": "https://www.orthodb.org/?gene=A0A8C2M835", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31075", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31075", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31075:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31075:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24555", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24555", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257896", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257896", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M835", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M835", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M835-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M835-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWGRFLAPEAGGRDSPGGARSFPAGADYSSAWLPGNEALWQATTVPSSHRNNHIRRHSITSDSGDTGIGTSCSDSVEDHSTSSGTLSFKPSRSLVTLPTAHVMPSNSSDSISKHMESVASDSSKWTVSLMQSLGDHSRGEQDSSLDMKDFRPLRKWSSLSKLTAPDNCNQSGIAYTEELRNDLEKIGKGKNFPPHLRTVGPSCLHDSMEMLKLEDKEINKKWSSTLDCKYKFESYNKEDTRASSSALRRQTLDMTYSALPESKPIVTGSEAFESPKYLMLGQQAVSGVPIQPSVRTQMWLTEQLRTNPLEDRTSEDSYSLAPWQQPQIEEFQQGSETPMQVLPGSSRQSYSPSGFQDFSKWESVLKIKEGLLRQKEIVIDRQKQQINHLHERIRDNELRAQHAMLGHYVNCEESYMSSLQPQYENSPVQTPFSEQSLSHPQQEELEQKLASTEKEVLQLNEFLKQRINKFSEEKKKLEEKLKTRDRYINSLKKKCQKESEQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETLIDTEKKLEEIRKQCQDKEVQLLCQKKKEKELVTSVQSLQQKVEKCLEDGIRLPMLDAKQLQSENDNLREQNATASKIIESQQDEINRMILEIQSMQAKLSKEKLTAQNVGEELGRKEGSLQRLTDVLLESQRQTGEMYSLLDQGQEAEQSGLQTIHSKWPVFDLTVIDQLFKEMSYCLFDLKALCSILNQRAQGKEPNLSLLLGIRSMNCSAEETEHDHSPEALTKKLSDVCQLRRDIDELRTTISDRYAQDMGDNCVTQ", "length": 806, "header": "tr|A0A8C2M835-1|A0A8C2M835_CRIGR Isoform 1 of Centrosomal protein of 85 kDa-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep85l PE=4 SV=1 CANONICAL=A0A8C2M835-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M835-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M835/entry", "sequence": { "sequence": "MWGRFLAPEAGGRDSPGGARSFPAGADYSSAWLPGNEALWQATTVPSSHRNNHIRRHSITSDSGDTGIGTSCSDSVEDHSTSSGTLSFKPSRSLVTLPTAHVMPSNSSDSISKHMESVASDSSKWTVSLMQSLGDHSRGEQDSSLDMKDFRPLRKWSSLSKLTAPDNCNQSGIAYTEELRNDLEKIGKGKNFPPHLRTVGPSCLHDSMEMLKLEDKEINKKWSSTLDCKYKFESYNKEDTRASSSALRRQTLDMTYSALPESKPIVTGSEAFESPKYLMLGQQAVSGVPIQPSVRTQMWLTEQLRTNPLEDRTSEDSYSLAPWQQPQIEEFQQGSETPMQVLPGSSRQSYSPSGFQDFSKWESVLKIKEGLLRQKEIVIDRQKQQINHLHERIRDNELRAQHAMLGHYVNCEESYMSSLQPQYENSPVQTPFSEQSLSHPQQEELEQKLASTEKEVLQLNEFLKQRINKFSEEKKKLEEKLKTRDRYINSLKKKCQKESEQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETLIDTEKKLEEIRKQCQDKEVQLLCQKKKEKELVTSVQSLQQKVEKCLEDGIRLPMLDAKQLQSENDNLREQNATASKIIESQQDEINRMILEIQSMQAKLSKEKLTAQNVGEELGRKEGSLQRLTDVLLESQRQTGEMYSLLDQGQEAEQSGLQTIHSKWPVFDLTVIDQLFKEMSYCLFDLKALCSILNQRAQGKEPNLSLLLGIRSMNCSAEETEHDHSPEALTKKLSDVCQLRRDIDELRTTISDRYAQDMGDNCVTQ", "length": 806, "header": "tr|A0A8C2M835-1|A0A8C2M835_CRIGR Isoform 1 of Centrosomal protein of 85 kDa-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep85l PE=4 SV=1 CANONICAL=A0A8C2M835-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269546", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269546" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M863", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M863" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "N4bp2l1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M863", "locus": {} } ], "crossref": [ { "id": "100760596", "url": "https://www.ncbi.nlm.nih.gov/gene/100760596", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760596", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760596", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M863", "url": "https://www.orthodb.org/?gene=A0A8C2M863", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13308", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13308", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13308:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13308:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13671", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13671", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269546", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269546", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M863", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M863", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M863-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M863-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDSFLESFGRLSLHQRQRQQPPPPRPPPARGPPPRRHSFKKHLYLLRGLPGSGKTTLARQLQRDFPRALIFSTDDFFFRDDGAYEFNPDFLEEAHEWNQKRARKAMQNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELARRNIHGVPREKIHRMKERYEHDVTFHSVLHAEKPSRVNRNQDRNSAPSSGSGYWSTYTELPNRRAHGGFSNESFRRGGCHHGY", "length": 240, "header": "tr|A0A8C2M863-1|A0A8C2M863_CRIGR Isoform 1 of NEDD4-binding protein 2-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=N4bp2l1 PE=4 SV=1 CANONICAL=A0A8C2M863-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M863-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M863/entry", "sequence": { "sequence": "MEDSFLESFGRLSLHQRQRQQPPPPRPPPARGPPPRRHSFKKHLYLLRGLPGSGKTTLARQLQRDFPRALIFSTDDFFFRDDGAYEFNPDFLEEAHEWNQKRARKAMQNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELARRNIHGVPREKIHRMKERYEHDVTFHSVLHAEKPSRVNRNQDRNSAPSSGSGYWSTYTELPNRRAHGGFSNESFRRGGCHHGY", "length": 240, "header": "tr|A0A8C2M863-1|A0A8C2M863_CRIGR Isoform 1 of NEDD4-binding protein 2-like 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=N4bp2l1 PE=4 SV=1 CANONICAL=A0A8C2M863-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FV69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV69/entry", "sequence": { "sequence": "MEDSFLESFGRLSLHQRQRQQPPPPRPPPARGPPPRRHSFKKHLYLLRGLPGSGKTTLARQLQRDFPRALIFSTDDFFFRDDGAYEFNPDFLEEAHEWNQKRARKAMQNGISPIIIDNTNLHAWEMKPYAVMKKYPWSAKRKNTPDERTV", "length": 150, "header": "tr|A0A9J7FV69-1|A0A9J7FV69_CRIGR Computationally mapped isoform of NEDD4-binding protein 2-like 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=N4bp2l1 PE=4 SV=1 CANONICAL=A0A8C2M863-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M863", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M863" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M863", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M863" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760596", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760596", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M8F2-1", "uniprot_ac": "A0A8C2M8F2", "uniprot_id": "A0A8C2M8F2_CRIGR", "mass": { "chemical_mass": 172879.0, "monoisotopic_mass": 172879.0 }, "refseq": { "ac": "XP_035307305", "name": "NACHT domain- and WD repeat-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307305" }, "gene_names": [ { "name": "Nwd1", "type": "recommended", "evidence": [ { "id": "A0A8C2M8F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" } ] }, { "name": "Nwd1", "type": "synonym", "evidence": [ { "id": "XP_035307305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307305" } ] } ], "protein_names": [ { "name": "NACHT domain- and WD repeat-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035307305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307305" }, { "id": "A0A8C2M8F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613716.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307305", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307305" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nwd1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2", "locus": {} } ], "crossref": [ { "id": "100758068", "url": "https://www.ncbi.nlm.nih.gov/gene/100758068", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057588", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057588", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758068", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758068", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RGVQCVC", "url": "https://omabrowser.org/oma/group/RGVQCVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M8F2", "url": "https://www.orthodb.org/?gene=A0A8C2M8F2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45013", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45013", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45013:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45013:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25469", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307305", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307305", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M8F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDG7-1", 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"MDAEREVLQCTAYPEVQSFCQKHGLTFEVVDLRWGVPNTQATDHLTIELCLEELDRCQKTSIGPAFVALLGDQYGPCLVPQRIEEKEWKALRAQLTSRPQDLELVARHFRRDDNAIPPTYLLQPPGSVGAPEPEEATLTSVLQGGAQEAWRLGLINQEQWKCYHRSVIEWEIERGLLSSAAGAQGATVFLRDVQDLSKHILDDCSLKMVDRLADGCLDTNSQSLLSGLKGRILDAQPGALKSHRLPWSRDLVNPKNKAHARYLKELSEQFVARTNHQVLEQLRELESARQELGWLYQEIRHHLWRSTESTRIFCGHQELLAQLGQRLRQDDSRSHTPLVLFGPPGIGKTSLMCKLAEQVPELLGHKTVAVLRLLGTSKMSLDARSLLRSLSFQLCLAYGLPLPPPQVLEVHGRVGHFFHRLLHTVSCRNFESLVLLLDSADDLDSICHSRRVSWLPLKCPPKVHVILSTCSGQQVLYTLQQTLKDPSAYWEVKALSGCQGQELIQLLLAAERRTLSPAQRDILWASLPECGHPGRLRLAFEEARKWASFTVPVPLAATAEEATHQLCIRLENTHGQLLVAHVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLAHCLTRRAVDGCTLLAIAHRQLSKVIQVRYLSGPERSKRHAVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSGTVANWRKLTELPFHLLHAGRMEELKQEVLGNMNWISCRGISGSIEDLLDDFDMCAPHMDSPEVSLVREALQLCRPAVELRGMENSILYTELLARLLFFATSHPAMIGQLCQQAQSWFRACPHPMLVPLAGFLQPPGGRLQATLTGCHKGITAVAWSLEEKLLVVGTQDGIMVVWDVEEQQVVHILTGHTAEVKCIRVFAQGTLAISASKDHTLRLWSLLSGQEKVTIVDRGSPNPTEPQRWGLHVDEINKVVYSTSSAKINAWNLETTKLAFCVPGEASDPWACVAVLAAQGVLLAVSKGGEVSLWSSATGKLQGKRQLSSIKEETPTCAVCIQTQVKLVTGFSSGSLSLVSSGEDSLLEKLPEAVGFLVASEDDSVLAAGFGRSVRIFLADSQGFHRFMATDLEHEDVVETAVLGPENNVIITGSRDALIQVWSLSEQGTLLDVLEGVGAPASLLVRGGTLVVSASWKSSSLKVWDLKSTSKPRPPAPFLDRTGLAAVSHHGSYIYFPKVGDKNKVTIWDLAEGEEQDSLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSEDRLAIAYDNIVLVLDISPGDPCPAIEGPTYTFYTQLPETIASVAVLGDYRVLYGMSDGGLFLYDCARSKVFPLEAHGSRVSCAEVSHGEQLAVSGAEDALLCLWDLQACRGMFEMSYESSYCRGVRCACFSKDDKYVFAGMKDRSIIAWSALDGTLLAVQFVHAVVNRIIPTSNGFMAPTSHGYLIRERFQCPSARASQQDPLKNFKKAVWLVKTRQREEQLAVAEASQDTGSVAAEGKESKSNKHSQVCLIL", "length": 1564, "header": "tr|A0A8C2M8F2-1|A0A8C2M8F2_CRIGR Isoform 1 of NACHT domain- and WD repeat-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nwd1 PE=4 SV=1 CANONICAL=A0A8C2M8F2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2/entry", "sequence": { "sequence": "MDAEREVLQCTAYPEVQSFCQKHGLTFEVVDLRWGVPNTQATDHLTIELCLEELDRCQKTSIGPAFVALLGDQYGPCLVPQRIEEKEWKALRAQLTSRPQDLELVARHFRRDDNAIPPTYLLQPPGSVGAPEPEEATLTSVLQGGAQEAWRLGLINQEQWKCYHRSVIEWEIERGLLSSAAGAQGATVFLRDVQDLSKHILDDCSLKMVDRLADGCLDTNSQSLLSGLKGRILDAQPGALKSHRLPWSRDLVNPKNKAHARYLKELSEQFVARTNHQVLEQLRELESARQELGWLYQEIRHHLWRSTESTRIFCGHQELLAQLGQRLRQDDSRSHTPLVLFGPPGIGKTSLMCKLAEQVPELLGHKTVAVLRLLGTSKMSLDARSLLRSLSFQLCLAYGLPLPPPQVLEVHGRVGHFFHRLLHTVSCRNFESLVLLLDSADDLDSICHSRRVSWLPLKCPPKVHVILSTCSGQQVLYTLQQTLKDPSAYWEVKALSGCQGQELIQLLLAAERRTLSPAQRDILWASLPECGHPGRLRLAFEEARKWASFTVPVPLAATAEEATHQLCIRLENTHGQLLVAHVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLAHCLTRRAVDGCTLLAIAHRQLSKVIQVRYLSGPERSKRHAVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSGTVANWRKLTELPFHLLHAGRMEELKQEVLGNMNWISCRGISGSIEDLLDDFDMCAPHMDSPEVSLVREALQLCRPAVELRGMENSILYTELLARLLFFATSHPAMIGQLCQQAQSWFRACPHPMLVPLAGFLQPPGGRLQATLTGCHKGITAVAWSLEEKLLVVGTQDGIMVVWDVEEQQVVHILTGHTAEVKCIRVFAQGTLAISASKDHTLRLWSLLSGQEKVTIVDRGSPNPTEPQRWGLHVDEINKVVYSTSSAKINAWNLETTKLAFCVPGEASDPWACVAVLAAQGVLLAVSKGGEVSLWSSATGKLQGKRQLSSIKEETPTCAVCIQTQVKLVTGFSSGSLSLVSSGEDSLLEKLPEAVGFLVASEDDSVLAAGFGRSVRIFLADSQGFHRFMATDLEHEDVVETAVLGPENNVIITGSRDALIQVWSLSEQGTLLDVLEGVGAPASLLVRGGTLVVSASWKSSSLKVWDLKSTSKPRPPAPFLDRTGLAAVSHHGSYIYFPKVGDKNKVTIWDLAEGEEQDSLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSEDRLAIAYDNIVLVLDISPGDPCPAIEGPTYTFYTQLPETIASVAVLGDYRVLYGMSDGGLFLYDCARSKVFPLEAHGSRVSCAEVSHGEQLAVSGAEDALLCLWDLQACRGMFEMSYESSYCRGVRCACFSKDDKYVFAGMKDRSIIAWSALDGTLLAVQFVHAVVNRIIPTSNGFMAPTSHGYLIRERFQCPSARASQQDPLKNFKKAVWLVKTRQREEQLAVAEASQDTGSVAAEGKESKSNKHSQVCLIL", "length": 1564, "header": "tr|A0A8C2M8F2-1|A0A8C2M8F2_CRIGR Isoform 1 of NACHT domain- and WD repeat-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nwd1 PE=4 SV=1 CANONICAL=A0A8C2M8F2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDG7/entry", "sequence": { "sequence": "MDAEREVLQCTAYPEVQSFCQKHGLTFEVVDLRWGVPNTQATDHLTIELCLEELDRCQKTSIGPAFVALLGDQYGPCLVPQRIEEKEWKALRAQLTSRPQDLELVARHFRRDDNAIPPTYLLQPPGSVGAPEPEEATLTSVLQGGAQEAWRLGLINQEQWKCYHRSVIEWEIERGLLSSAAGAQGATVFLRDVQDLSKHILDDCSLKMVDRLADGCLDTNSQSLLSGLKGRILDAQPGALKSHRLPWSRDLVNPKNKAHARYLKELSEQFVARTNHQVLEQLRELESARQELGWLYQEIRHHLWRSTESTRIFCGHQELLAQLGQRLRQDDSRSHTPLVLFGPPGIGKTSLMCKLAEQVPELLGHKTVAVLRLLGTSKMSLDARSLLRSLSFQLCLAYGLPLPPPQVLEVHGRVGHFFHRLLHTVSCRNFESLVLLLDSADDLDSICHSRRVSWLPLKCPPKVHVILSTCSGQQVLYTLQQTLKDPSAYWEVKALSGCQGQELIQLLLAAERRTLSPAQRDILWASLPECGHPGRLRLAFEEARKWASFTVPVPLAATAEEATHQLCIRLENTHGQLLVAHVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLAHCLTRRAVDGCTLLAIAHRQLSKVIQVRYLSGPERSKRHAVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSGTVANWRKLTELPFHLLHAGRMEELKQEVLGNMNWISCRGISGSIEDLLDDFDMCAPHMDSPEVSLVREALQLCRPAVELRGMENSILYTELLARLLFFATSHPAMIGQLCQQAQSWFRACPHPMLVPLAGFLQPPGGRLQATLTGCHKGITAVAWSLEEKLLVVGTQDGIMVVWDVEEQQVVHILTGHTAEVKCIRVFAQGTLAISASKDHTLRLWSLLSGQEKVTIVDRGSPNPTEPQRWGLHVDEINKVVYSTSSAKINAWNLETTKLAFCVPGEASDPWACVAVLAAQGVLLAVSKGGEVSLWSSATGKLQGKRQLSSIKEETPTCAVCIQTQVKLVTGFSSGSLSLVSSGEDSLLEKLPEAVGFLVASEDDSVLAAGFGRSVRIFLADSQGFHRFMATDLEHEDVVETAVLGPENNVIITGSRDALIQSSSLKVWDLKSTSKPRPPAPFLDRTGLAAVSHHGSYIYFPKVGDKNKVTIWDLAEGEEQDSLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSEDRLAIAYDNIVLVLDISPGDPCPAIEGPTYTFYTQLPETIASVAVLGDYRVLYGMSDGGLFLYDCARSKVFPLEAHGSRVSCAEVSHGEQLAVSGAEDALLCLWDLQACRGMFEMSYESSYCRGVRCACFSKDDKYVFAGMKDRSIIAWSALDGTLLAVQFVHAVVNRIIPTSNGFMAPTSHGYLIRERFQCPSARASQQDPLKNFKKAVWLVKTRQREEQLAVAEASQDTGSVAAEGKESKSNKHSQVCLIL", "length": 1527, "header": "tr|A0A9J7KDG7-1|A0A9J7KDG7_CRIGR Computationally mapped isoform of NACHT domain- and WD repeat-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nwd1 PE=4 SV=1 CANONICAL=A0A8C2M8F2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758068", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758068", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AD74-1", "protein_name": "SIN3 transcription regulator family member B", "gene_name": "Nwd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTEREALQCTAYPEVQSFCQKHGLAFEAVDLRWGIPNTQATDYLTTELCLEELERCQKTSVGPAFVALLGDQYGPCPVPQRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTIPPTYVLQPPGSGVVPGPEEATLTSVLRGGAQEAWRLGLISQEQWMCYHRSVIEWEIEHGLLNSARGDQGATVFLRDVQDLSKHILDDCCLKMVDRLADGCLDTNAQSLLSGLKGRILDAQPGALKSHHLPWSRDLVNPKNKTHARYLKQLSEQFVARTNHQVLEQLRELELARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLKQRLRQDESRTHTPLVLFGPPGIGKTSLMCKLAQQVPELLGHKTVAVLRLLGTSKLSLDARSLLRSLSFQLCLAYGLPLPPAQVLEAHSRVGHFFHILLHTVSQRNFESLVLLLDSVDDLDSIRHTPRVSWLPLKCPPRVHLILSACSGQQVLCNLQQTLKDPSAYWEVKALSGSQGQEFIQLLLAAERRMLSPGQRDVLWASLPECGHPGRLRLAFEEARKWASFTVPVPLATTAEEATHQFCIRLEETHGQLLVARVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGHCLVRRPVDGCILLAIAHRQLSQVIQVRYLSGPERAKRHGVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSGTVANWRKLTELPFHLLHAGCLEELKQEVLGNMSWISCRGISGGIEDLLDDFDMCAPHMDSPEVYLVREAIQLCRPAVELRGLEKSILYTELLARLLFFATSHPAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGTMVVWDVEEQQVVHVLMGHTAEVRCVRVFAQGTLAISASKDHTLRLWSLLSGQEKATILDGGSPNPTEQQGWDLHVDEIKNVVYSTSGTKINVWDLETSKLVFCITGDASDPWVCVALLAAQGLLLALTEGGQVSLWSSAVGKLQEKHQLCSIKEETPTCAVSIQTRARLVVGFSSGSVALVCAGEDRLLEKLPEAVGFLAVSEDDSLLAVGFGRCVRVFLADSQDFHRFMATDLEHEDVVETAVLGPENNLIITASRDALIQVWSLSEQGTLLSVFESAGAPASLLVLCETLVVSASWKSSSFKAWDLRSTQKPPSPTPFLDRTGLATVSHHGSYVYFPKVGDKNKVTIWDLAEGEEQDSLDTSNEVCCLEVAEQTKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSVSKSEDRLAIAYDNIVLVLDISPGDLCPAIEGPTYTFYTQLPETIVRVAVLADYRVVYGMSDGSLFLYDCAQSKVFPLEAHGSRVSCVEVSHREQLAVSGAEDALLCLWDLQACREKFKMSYESSYCRGVRCACFSKDDKHVFTGMEDRSIIAWSALDGTLLAVQFVHAVVNRIIPTSNGFMAPTSHGYLIRERFQCPSARASQQDPLKNFKKAVWLIKTRQREDLAEAEAPQDAEPVAVEGKESKSNKHSQVCLIL", "length": 1563 }, "evidence": [ { "id": "A0A8C2M8F2", "url": "https://omabrowser.org/oma/group/A0A8C2M8F2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6H603-1", "protein_name": "NACHT domain- and WD repeat-containing protein 1", "gene_name": "Nwd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTEREALQCTAYPEVQSFCQRHGLAFEVVDLRWGIPNTQATDYLTTELCLEELERCQKTSIGPAFVALLGDQYGPCPVPRRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTIPPTYVLQPSGSLVVPGPEEATLTSVLRGGAQEAWRLGLISQEQWMCYHRSVIEWEIELGLLSSARGDQGATVFLRDVQDLNKHILDDCSLKMVDRLVDGCLDTNAQSLLSGLKGRILDAQPGALKSHHLSWSRDLVNPKNKAHARYLKQLSEQFVARTNHQVLEQLRELELARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLRQQLRQDESRTHTPLVLFGPPGIGKTSLMCKLAQQVPELLGHKTVVVLRLLGTSKLSLDARSLLRSLSFQVCLAYGLPLPPAQVLEAHSRVGHFFHTLLHTVSQRNFESLVLLLDSVDDLDSICHSPRVSWLPLKCPPRVHLILSTCSGQQVLHNLQQTLKDPSTYWEVKALSGSQGQEFIQLLLAAEKRMLSPGQRDVLWASLPECGHPGRLRLAFEEARKWASFTVPVPLATTAEEATHQLCIRLEETHGALLVAHVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGHCLVRRPVDGCMLLAIAHRQLSQVIQVRYLSGPERAKRHGVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSSTVANLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCAPHMNSPEVDLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASHPAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGAMVVWDVEEQQVVHVLMGHTAEVKCVRVFAQGTLAISASKDHTLRLWSLLSGQEKVTILDGGSQNPTEPQSWDLHVDERNNVVYSTSGARINMWNLETSKLVFCITGDVSDPWVCVALLAAQGLLLALSKGGQVSLWSSAMGKLQEKHQLSSIKEETPTCAVSIQSRARLVAGFSSGSIALVSAGEDRLLEKLPEAVGFLVVSEDDSLLVAGFGRFVRIFLADSQGFHRFMASDLEHEDMVETAVLGPENNLIITGSRDALIQVWSLSEQGTLLNVLEGVGAPVSLLVRGGTLVVSASRKSSSFKVWDLKSTKKLQSPTPFLDRTGLAAVSHHGSFVYFPKVGDKNKVTIWDLAEGEEQDCLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSENRLAIAYDNIVLVLDISPGDPCPAIEGPTYTFYTQLPETIVSVAVLADYRVVYGMSDGSLFLYDCACSKVFPLEAHGSRVSCVEVSHSEQLAVSGAEDALLCLWDLQACRGMFEMSYENSCCRGVRCACFSRDDKHVFAGMEDRSVTAWSTVDGTLLAVQFVHAVINRIIPTSNGFMAPTSHGYLIRERFQCPSVRASQQDPLKNFKKAVWLVKTRQREELAAAEASQDAEPVAVEGKESKSNKRSQVCLIL", "length": 1563 }, "evidence": [ { "id": "A0A8C2M8F2", "url": "https://omabrowser.org/oma/group/A0A8C2M8F2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1S9U8-1", "protein_name": "NACHT and WD repeat domain containing 1", "gene_name": "NWD1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDAEREALQSTAYPEVQTFCQKHGLMFEVVDLRWGIQNTEATDHMTTELCLEELDRCRKTSIGPAFVALLGDQYGPCPIPTLIEEKEWEALKAQLTASPRDLELVARRFWRDENAVPPTYLLQAPCTGEARGPEEATLTSVLRTGAQEARRLGLITQEQWHRYHRSVIEWEIERGLLSSTDGDRGVTVFLREIQDLNKHILEDCALKMVDRLMDGCLDTDAQNLLSSLKGRIANKQPGVLKAHHLTWSRDLVNPKNKAHARYLKELGEQFVARANYQVLEHLRELEVGRQELAWLYQEIRHHLGLSAEATRTFCGRQELLAQLGQQLRLSDSQPHPPLVLFGPPGIGKTALMCKLAERMPGLLGRKTVTVLRLLGTSQMSSNARGLLHSICFQVCLAYGLPLPPAQVLEAHARVVQFFHALLHTVSCRNFESLVILLDSVDEVDSVHRARRIPWLPPNCPPRVHLILSACSGQQGVLDTMQKVLTDPGAYWEVKPLSGNQGQEMIQLLLAASRRTLSPMQRDLLWASLPECGHPGRLRLAFEEARKWASFTVPAPLASTSREATHQLCVRLEQTHGQLLVARVLGYIVSSRHGLSEAELKDVLSLDDEVLQAVYQDWTPPSRELLRFPPLLWVRLRRDLGICLARRPVDGFLLLAIAHRQLAEVVQERYLSVPEKAKSHGVLADFFSGAWSQGTKKLITLPLVGKPLNLDRKVAPQPLWFSDAVANLRKLKELPYHLLHSGRIEELKQEVLGNMNWISCRGISGGIEGLLDDFDLCAPHVDCSEVSLVREALQLCRPAVELRGMERSVLYTELLARLHFFATSHPALVGQLCQQAQSWFRVSPFPVLVPLGGFLQPPGGPLRATLTGCHKGITAMAWSLEEKLLVVGTQEGMVAVWDMEEQQVIHILTGHRGEVRCVKVFAKGTLAISASKDHTLRLWNLLSGQEKITIWDGGSKDSTEPQIWSLHVDESKKAVYSASSSKVNAWNLETGELIFCILGDASEPWVSTAVLTSQATLLTASKGCVVCLWSSDTGKLLRKQHLSSIKEETLTCVVSVQKQGKMLTGTSKGSISLFSSEGDSLLEKLPEAVGFLVVSEDESLLAAGFGRSVRIFLADSQGFHRFMATDLEHEDMVETAVFGPENNLIVTGSRDALIQVWSLSEQGTLLDILEGVGAPVSLLAQAGTLVASASHQSSSFKVWDLGYTQKPRASTPFLDRTGLTAVSHNGSYIYFPKVGDKNKVTIWDLAEGEEQDTLDTSNEVKCLEVAEQTKLLFTGLVSGIVLVFPLNSRQDVMCIPPPEARKAINCMALSKDEGRLAIAYDSIVLVLDISPGDPCPVINGPTYTFYTQLPDTIASVAVLADYRVVYGMTNGDLFLYECANSKVFPLEAHRSRVTCVEVSHKEQLAVSGSEEALLCLWDLQTCKWKFEMSSTNSYCRGVQCACFSKDDNYVYAGLKDRSIIVWSVLDGTLLAVQFVHAIVNRIIPTANGFIAPTRHGYLIRERFQCPSSRVSQQDPLKNFKKAVWMVKSRQREELAAAAGALQDSRSGSAQGNESKSNKRSQVCLLV", "length": 1565 }, "evidence": [ { "id": "A0A8C2M8F2", "url": "https://omabrowser.org/oma/group/A0A8C2M8F2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q149M9-1", "protein_name": "NACHT domain- and WD repeat-containing protein 1", "gene_name": "NWD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQRGKPCRALPTLKCQTFCQRHGLMFEVVDLRWGIRNIEATDHLTTELCLEEVDRCWKTSIGPAFVALIGDQYGPCLIPSRIDEKEWEVLRDHLTARPSDLELVARYFQRDENAFPPTYVLQAPGTGEACEPEEATLTSVLRSGAQEARRLGLITQEQWQHYHRSVIEWEIERSLLSSEDREQGATVFLREIQDLHKHILEDCALRMVDRLADGCLDADAQNLLSSLKSHITDMHPGVLKTHRLPWSRDLVNPKNKTHACYLKELGEQFVVRANHQVLTRLRELDTAGQELAWLYQEIRHHLWQSSEVIQTFCGRQELLARLGQQLRHDDSKQHTPLVLFGPPGIGKTALMCKLAEQMPRLLGHKTVTVLRLLGTSQMSSDARGLLKSICFQVCLAYGLPLPPAQVLDAHTRVVQFFHTLLHTVSCRNFESLVLLLDAMDDLDSVRHARRVPWLPLNCPPRVHLILSACSGALGVLDTLQRVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGRLRLAFEEARKWASFTVPVPLATTAEEATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLLWVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFSGTWSQGTKKLITLPLVGKPLNLDRKVAPQPLWFSHTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCAPHLDSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHKGITAMAWGVEEKLLVIGTQDGIMAVWDMEEQHVIHMLTGHTGEVRCVKIFAKGTLANSASKDYTLHLWNLLSGQEKFTIWDGGSKNPAEPQIWNLHVDEAHKVVYSASGSKINAWNLETAEPVFHILGDASDPWMCMAVLASQATLLTVSRDGVVSLWSSATGKLQGKQHMSSIKEETPTCAVSVQKQGKLVTGFSNGSISLVSSKGDRLLEKLPDAVRFLVVSEDESLLAAGFGRSVRIFLADSRGFRRFMAMDLEHEDMVETAVFGTENNLIITGSLDALIQVWSLSEQGTLLDILEGVGAPVSLLARGGALVASASPQSSSFKVWDLSDAHRSRVPAPFLDRTGLTAVSHNGSYVYFPKIGDKNKVTIWDLAEGEEQDSLDTSSEIRCLEVAEQRKLLFTGLVSGVVLVFPLNSRQDVICIPPPEARKAINCMSLSKCEDRLAIAYDNIVLVLDITSGDPCPVIDGPRYTFYTQLPETLSSVAILTDYRVVYSMTNGDLFLYECATSKAFPLETHRSRVACVEVSHKEQLVVSGSEDALLCLWDLQARKWKFEMSYTSSYCRGVQCACFSKDDKYVYVGLKDRSILVWSVLDGTLLTVQFVHAVVNRIIPTTSGFIAPTRHGYLIRENFQCLSAKASPQDPLKNFKKAMWMVKSRQREELVAAAGAPQDLESESAQGNETKSNKCSQVCLIV", "length": 1564 }, "evidence": [ { "id": "A0A8C2M8F2", "url": "https://omabrowser.org/oma/group/A0A8C2M8F2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M8F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" }, { "id": "PF05729", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05729" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NACHT", "eco_id": "ECO_0000259", "start_pos": 338, "end_pos": 505, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2M8F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F2" }, { "id": "PF25469", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25469" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NWD1/2-like winged helix-turn-helix", "eco_id": "ECO_0000259", "start_pos": 569, "end_pos": 672, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M8F4-1", "uniprot_ac": "A0A8C2M8F4", "uniprot_id": "A0A8C2M8F4_CRIGR", "mass": { "chemical_mass": 54487.0, "monoisotopic_mass": 54487.0 }, "refseq": { "ac": "XP_027247270", "name": "putative transporter SVOPL isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247270" }, "gene_names": [ { "name": "Svopl", "type": "recommended", "evidence": [ { "id": "A0A8C2M8F4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" } ] }, { "name": "Svopl", "type": "synonym", "evidence": [ { "id": "XP_027247270", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247270" } ] } ], "protein_names": [ { "name": "Transporter SVOPL isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2M8F4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4/entry#names_and_taxonomy" } ] }, { "name": "putative transporter SVOPL isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027247270", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247270" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027247270.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247270", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247270" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Svopl", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4", "locus": {} } ], "crossref": [ { "id": "cd17442", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17442", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771683", "url": "https://www.ncbi.nlm.nih.gov/gene/100771683", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771683", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771683", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTWIGVC", "url": "https://omabrowser.org/oma/group/PTWIGVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M8F4", "url": "https://www.orthodb.org/?gene=A0A8C2M8F4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23511", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23511", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23511:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23511:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247270", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247270", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M8F4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAKQTEPVTIISLRKLSQASPEPQQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWHLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYVWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISLASVLIPTIGWRWLIRVASIPGIILIMAFKFIPESARFNVSTGNTQAALDTLESIARMNRSVMPEGQLVEPILEKRGRFADLLDSKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSGSEPEVVVTTGETEGSRSPCYCHLFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRALGMGTSGSLCRIGAMVAPFISQVLMSASFLGALCLFSSVCVVCAISAFTLPIETKGRALQQMK", "length": 494, "header": "tr|A0A8C2M8F4-1|A0A8C2M8F4_CRIGR Isoform 1 of Transporter SVOPL isoform X2 OS=Cricetulus griseus OX=10029 GN=Svopl PE=3 SV=1 CANONICAL=A0A8C2M8F4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4/entry", "sequence": { "sequence": "MAAKQTEPVTIISLRKLSQASPEPQQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWHLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYVWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISLASVLIPTIGWRWLIRVASIPGIILIMAFKFIPESARFNVSTGNTQAALDTLESIARMNRSVMPEGQLVEPILEKRGRFADLLDSKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSGSEPEVVVTTGETEGSRSPCYCHLFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRALGMGTSGSLCRIGAMVAPFISQVLMSASFLGALCLFSSVCVVCAISAFTLPIETKGRALQQMK", "length": 494, "header": "tr|A0A8C2M8F4-1|A0A8C2M8F4_CRIGR Isoform 1 of Transporter SVOPL isoform X2 OS=Cricetulus griseus OX=10029 GN=Svopl PE=3 SV=1 CANONICAL=A0A8C2M8F4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 427, "start_aa": "Thr", "end_pos": 427, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr427", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771683", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771683", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YIG1-1", "protein_name": "SVOP like", "gene_name": "SVOPL", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATAPKEAANTIALEEIHTEGPEPPKGQKTFTVEEAVETIGFGRFHIALFLIMGSTVVAEAMEIMLIAVVSPLIRCEWQLQDWQVALVTTMVFFGYMVFSIVLGLLADRYGRWKILLLSFLWGAYFSLLTSFAPSYIWFVFLRTMVGGGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVVNPTIGWRWLIRIASIPGIILIMVFKFIPESARYNVSTGNNVAALATLQRIAKMNRATMPEGALQEPPKERRGRFKDLLHPKYLRTTLQIWIIWLGIAFAYYGVILASAELLERDLGCTSRTPPSENAGPVSEESRSPCYCHPFGPSAYRTMIISTAGEIALNPLNILGINFLGRRLSLCITMGCTALFFLLLNVCTSSAGMTGFLFMLRALVSANFNTIYIYTAEVYPTTMRALGMGTSGSLCRVGAMVAPFISQVLMSASFLGALCLFSSVCVVCAISAFTLPIETKGRALQQVK", "length": 490 }, "evidence": [ { "id": "A0A8C2M8F4", "url": "https://omabrowser.org/oma/group/A0A8C2M8F4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A9T9-1", "protein_name": "SVOP like", "gene_name": "Svopl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAKQTEPVTIISLRKLSQAAPEPQQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALDTLESIAKMNRSVMPEGRLVEPILEKRGRFADLLESKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVENMGDAEEGRSPCYCHMFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRALGMGTSGSLCRIGAMVAPFISQVLMSASFLGALCLFSSVCVVCAISAFTLPIETKGRALQQIK", "length": 494 }, "evidence": [ { "id": "A0A8C2M8F4", "url": "https://omabrowser.org/oma/group/A0A8C2M8F4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BGJ7-1", "protein_name": "V-type proton ATPase subunit a", "gene_name": "ATP6V0A4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASIFRSEEMCLSQLFLQVEAAYCCVAELGELGLVQFKDLNVKESRFQRKFVNEVRRCESLERILRFLEDQMQDEIEIQVPEKSPLTPLPREMIILETALEKLEGELQEANQNYQALKKNFLELTEFKHLLKKTQDFFETEANLADDFFVEDTSGLLELRPTPAYISGKLGFTAGVVNRERMASFERLLWRICRGNIYVKFSEMDTVLEDPVTREEIKKNIFIIFYQGEQLREKIKKVCDGYRATVYPCPELALERREMLQGVNMRLEDLLTVLTQTESHRQSLLQEAAANWHSWVIKVQKMKAIYHILNLCNIDITQQCVIAEIWFPVADTVRIRRALEQGVELSGSSMVPILTAVQSKTAPPTFNRTNKFTAGFQNIVDAYGIGSYREMNPAPYTIITFPFLFAVMFGDCGHGTVMFLAALWMVLNEKHLLAQKSTNEIWNTFFHGRYLILLMGIFSIYTGLIYNDCFAKSLNIFGSSWSVQPMFRNGTWSMQVLKTNPLLQLDPAVPGVYSGNPYPFGIDPIWNLASNKLTFLNSYKMKMSVILGIVQMVFGVILSLFNYRFFRNTLNIILQFIPEMIFILSLFGYLVFMIIFKWCSFDVSVSRRAPSILIHFINMFLFNYKDSSNVPLYQHQQKVQSFFVIMALISVPWMLLIKPFILRANHRKSQLQASRIPEDTTENTEGDNSGHIASVGAHGAQDDHDQEFNFGDIFVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVMHIGLRTRGWGGLVGVFIIFAVFAVLTVAILLIMEGLSAFLHALRLHWVEFQNKFYTGAGYKFSPFSFKQILDGTAEE", "length": 834 }, "evidence": [ { "id": "A0A8C2M8F4", "url": "https://omabrowser.org/oma/group/A0A8C2M8F4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PDF3-1", "protein_name": "Putative transporter SVOPL", "gene_name": "Svopl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAKQTEPVTIISLRKLSQAAPEPQQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLVEPILEKRGRFADLLDSKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLMSASFLGALCLFSSVCVVCAISAFTLPIETKGRALQQIK", "length": 494 }, "evidence": [ { "id": "A0A8C2M8F4", "url": "https://omabrowser.org/oma/group/A0A8C2M8F4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N434-1", "protein_name": "Putative transporter SVOPL", "gene_name": "SVOPL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATKPTEPVTILSLRKLSLGTAEPQVKEPKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLVEPVLEKRGRFADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFISQVLMSASILGALCLFSSVCVVCAISAFTLPIETKGRALQQIK", "length": 492 }, "evidence": [ { "id": "A0A8C2M8F4", "url": "https://omabrowser.org/oma/group/A0A8C2M8F4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" } ], "pmid": "" }, { "name": "synaptic vesicle", "id": "GO:0008021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008021", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8F4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M8F4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8F4" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 486, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 427 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 229, "end_pos": 231 }, { "start_pos": 249, "end_pos": 251 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": 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Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613630.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007650123", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650123" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8G3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8G3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tex26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8G3", "locus": {} } ], "crossref": [ { "id": "100760446", "url": "https://www.ncbi.nlm.nih.gov/gene/100760446", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043460", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043460", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MAECKDEAPSPIQCDSNLQSSDTNWDSYATTMKTAFTPKTGAMANLIRPKSVRRLGYTYSLSDPILNQTLYNEEYCWKEYSKENMIKSGTSRGLRTHKAHLAQDSFQWTLPKDKAIKPLPSVTLPTQEEIVRAAIANQFVSQTKRDFVDVAEAKRTMKRIPIAMNWKELLPRPLDTEFRHHYQVPAKIPELQDFSFKYGCYSSLPVASQGLVPSVLHSYIRNQERTKKQTTYASDYGKACLDFLMILDSFTPSQIQRYLQGVSSKDRQILDRFIHSHCDIPEETNGKGKRSHKKRP", "length": 296, "header": "tr|A0A9J7JGZ7-1|A0A9J7JGZ7_CRIGR Computationally mapped isoform of Testis-expressed protein 26 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tex26 PE=4 SV=1 CANONICAL=A0A8C2M8G3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ4/entry", "sequence": { "sequence": "MIKSGTSRGLRTHKAHLAQDSFQWTLPKDKAIKPLPSVTLPTQEEIVRAAIANQFVSQTKRDFVDVAEAKRTMKRIPIAMNWKELLPRPLDTEFRHHYQVPAKIPELQDFSFKYGCYSSLPVASQGLVPSVLHSYIRNQERTKKQTTYASDYGKACLDFLMILDSFTPSQIQRYLQGVSSKDRQILDRFIHSHCDIPEETNGKGKRSHKKRP", "length": 212, "header": "tr|A0A9J7JNJ4-1|A0A9J7JNJ4_CRIGR Computationally mapped isoform of Testis-expressed protein 26 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tex26 PE=4 SV=1 CANONICAL=A0A8C2M8G3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPH1/entry", "sequence": { "sequence": "MAECKDEAPSPIQCDSNLQSTGDTNWDSYATTMKTAFTPKTGAMANLIRPKSVRRLGYTYSLSDPILNQTLYNEEYCWKEYSKENMIKSGTSRGLRTHKAHLAQDSFQWTLPKDKAIKPLPSVTLPTQEEIVRAAIANQFVSQTKRDFVDVAEAKRTMKRIPIAMNWKELLPRPLDTEFRHHYQVPAKIPELQDFSFKYGCYSSLPVASQGLVPSVLHSYIRNQERTKKQTTYASDYGKACLDFLMILDSFTPSQIQRYLQGVSSKEISYSKQD", "length": 274, "header": "tr|A0A9J7JPH1-1|A0A9J7JPH1_CRIGR Computationally mapped isoform of Testis-expressed protein 26 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tex26 PE=4 SV=1 CANONICAL=A0A8C2M8G3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7J4/entry", "sequence": { "sequence": "MKTAFTPKTGAMANLIRPKSVRRLGYTYSLSDPILNQTLYNEEYCWKEYSKENMIKSGTSRGLRTHKAHLAQDSFQWTLPKDKAIKPLPSVTLPTQEEIVRAAIANQFVSQTKRDFVDVAEAKRTMKRIPIAMNWKELLPRPLDTEFRHHYQVPAKIPELQDFSFKYGCYSSLPVASQGLVPSVLHSYIRNQERTKKQTTYASDYGKACLDFLMILDSFTPSQIQRYLQGVSSKDRQILDRFIHSHCDIPEETNGKGKRSHKKRP", "length": 265, "header": "tr|A0A9J7K7J4-1|A0A9J7K7J4_CRIGR Computationally mapped isoform of Testis-expressed protein 26 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tex26 PE=4 SV=1 CANONICAL=A0A8C2M8G3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8G3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8G3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8G3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8G3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760446", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760446", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6G5J3-1", "protein_name": "Testis expressed 26", "gene_name": "Tex26", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFWDEMARCSDEVRYPPQCDPKLQSSDTNWDSYATTMKTAFTPKRGIVPDLIRPKSTRRLGYTYSLSDPILNETQYHDEYTWKLRPKENMLKLGTTRGVRNQRAHLGQEFFPWDLPKGKEPPSMEGVEKAIANQFVSRTKADFVDLTQATKPMKKFPRSQDRKSLLPQSLNTEFRQNYQIPAKIPELHDLSFKYGCYSSLPAASQGLVPSVLHSYIRNQERTKKQTTYESDYGKACLDFLTILDSFSPSQIHKYLESVSYKDRQILERFIHSHRDTEALPKENGKQSHRKRP", "length": 293 }, "evidence": [ { "id": "A0A8C2M8G3", "url": "https://omabrowser.org/oma/group/A0A8C2M8G3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0VB26-1", "protein_name": "Testis-expressed protein 26", "gene_name": "Tex26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARYRNKVSCPAQCDPKLQSTGDTSWDSYATTMKTAFTPKRGMVPDLIRPKSTRRLGFTYSIGDPILNESQYHDEYTWKLRSKENMVKTGTSRGVWNHKTHPGQEFFQWTHPKGKQTQKLPWIEPPSEESIQNAVASQFISCTKRDFVDLTQSKKTMKRFPRSQDRKSLLPRPLDTEFRYNYQIPAQIPELKDFSFKYGCYASLPVASQGLVPSVLSSYIRNEERTKKQTTYECDYGKACLDFLTILDSFTPSQVHDYLQSVSYKDRQILERFIHSHCDIEAKPNKREKQSHRKRP", "length": 296 }, "evidence": [ { "id": "A0A8C2M8G3", "url": "https://omabrowser.org/oma/group/A0A8C2M8G3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N6G2-1", "protein_name": "Testis-expressed protein 26", "gene_name": "TEX26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286763" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rsph6a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8", "locus": {} } ], "crossref": [ { "id": "cd22963", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22963", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758087", "url": "https://www.ncbi.nlm.nih.gov/gene/100758087", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006802", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006802", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758087", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758087", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M8J8", "url": "https://www.orthodb.org/?gene=A0A8C2M8J8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13159:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13159:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04712", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04712", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286763", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEPPPNPDTWSQERKASQSSERIRGSRESSQPLITIPEDGGYQPPLLRGSQGSRGSQDFQGAGLPHWPQRPSLGPESQGEEGMEYRRSMSLRYSYPPEEFSSQEYADENIMMQQQFPPGLLEQLETSYQDQGAGLVDQFNLYPGGYQASQHGPYLRDDPSLHLGPAGLGFMPFVGEVPDPEPRELAVQNAKAYLLQTSVDCNLSLYEHLVNLLTKILNQRPEDPLAILETLNRNTQWEWFHPKLDTLRDDPEMQPTYDMAEKQKALFSRSGGEGEQEMEEEVTDSPVPNIMETAFYFEQAGVGLSSDESFRIFLALRQLVEQQPIHSCRFWGKILGLNRSYLVAEVEFREGEEEGEEEEVEELMEGGEVMEAHGEEEGEEDEEKVVDAVPKPQWKPPPVVPKEESRTGANKYLYFVCNEPGRPWTRLPHVTPAQIVSARKIKKFFTGFLDTPVISYPPFPGNEANYLRAQIARISAATHISPLGFYQFGEEEGDEEEEGGAGRDSFEENPDFEGIPVLELVDSMANWVHHMQHILPQGRCTWVNPMQKTEEEEELGEEEEKADEGMEEVEQEVGPPLLTPLSEDAEIMHLSPWTTRLSCSLSPQYSVAVVRSNLWPGAYAYAVGKKFENLYIGWGHKYSPENFNPSLPAPIQHEYPSGPEIMEMSDPTVEEELALKAAQEQALAAAEEEEEDEEEEEDEDLED", "length": 704, "header": "tr|A0A8C2M8J8-1|A0A8C2M8J8_CRIGR Isoform 1 of Radial spoke head protein 6 homolog A isoform X2 OS=Cricetulus griseus OX=10029 GN=Rsph6a PE=4 SV=1 CANONICAL=A0A8C2M8J8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8/entry", "sequence": { "sequence": "MGEPPPNPDTWSQERKASQSSERIRGSRESSQPLITIPEDGGYQPPLLRGSQGSRGSQDFQGAGLPHWPQRPSLGPESQGEEGMEYRRSMSLRYSYPPEEFSSQEYADENIMMQQQFPPGLLEQLETSYQDQGAGLVDQFNLYPGGYQASQHGPYLRDDPSLHLGPAGLGFMPFVGEVPDPEPRELAVQNAKAYLLQTSVDCNLSLYEHLVNLLTKILNQRPEDPLAILETLNRNTQWEWFHPKLDTLRDDPEMQPTYDMAEKQKALFSRSGGEGEQEMEEEVTDSPVPNIMETAFYFEQAGVGLSSDESFRIFLALRQLVEQQPIHSCRFWGKILGLNRSYLVAEVEFREGEEEGEEEEVEELMEGGEVMEAHGEEEGEEDEEKVVDAVPKPQWKPPPVVPKEESRTGANKYLYFVCNEPGRPWTRLPHVTPAQIVSARKIKKFFTGFLDTPVISYPPFPGNEANYLRAQIARISAATHISPLGFYQFGEEEGDEEEEGGAGRDSFEENPDFEGIPVLELVDSMANWVHHMQHILPQGRCTWVNPMQKTEEEEELGEEEEKADEGMEEVEQEVGPPLLTPLSEDAEIMHLSPWTTRLSCSLSPQYSVAVVRSNLWPGAYAYAVGKKFENLYIGWGHKYSPENFNPSLPAPIQHEYPSGPEIMEMSDPTVEEELALKAAQEQALAAAEEEEEDEEEEEDEDLED", "length": 704, "header": "tr|A0A8C2M8J8-1|A0A8C2M8J8_CRIGR Isoform 1 of Radial spoke head protein 6 homolog A isoform X2 OS=Cricetulus griseus OX=10029 GN=Rsph6a PE=4 SV=1 CANONICAL=A0A8C2M8J8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758087", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758087", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8" } ], "pmid": "" }, { "name": "radial spoke head", "id": "GO:0001535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001535", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "axoneme assembly", "id": "GO:0035082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035082", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8" } ], "pmid": "" }, { "name": "manchette disassembly", "id": "GO:1905199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905199", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8" } ], "pmid": "" }, { "name": "sperm flagellum assembly", "id": "GO:0120316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120316", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8J8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8J8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { 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This record is derived from a genomic sequence (NW_003614411.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003507708", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003507708" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8N0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Adck5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0", "locus": {} } ], "crossref": [ { "id": "cd13969", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13969", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762357", "url": "https://www.ncbi.nlm.nih.gov/gene/100762357", "database": "GeneID", "categories": [ "Genome 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"categories": [ "Protein Classification" ] }, { "id": "A0A9J7FLI0", "url": "https://www.orthodb.org/?gene=A0A9J7FLI0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03109", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003507708", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003507708", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M8N0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8N0-1", "url": 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"MWRPMRLCHFHSALLQNRQKPWPCPAIFFRRNFKSPMARTSRTRLLWRRTLSATVVGVPLLLGARYFTAEAQEKRRLRLAVDGIGRFGRSLKVGLLISLDYWWCTNVILRGVEENSPGYVKVMSACHQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPPEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAKLHDGTAVAVKVQYIDLRDRFDGDVHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNSERCAQELKHFHYVVVPRVHWDKSSKRVLTADFCEGCKVNDTEAIKRQGLAVQDVAKKLIQTFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDSAAMKTHAAELGVQDYMLFSEVLMQRPVRLGQLWGSHLLSREETVYMQDMAREHFEGIMEVLKALPRPMLLVLRNINTVRAINSTLGTPVDRYFLMAKSAVWGWSRLVGAAYHGIYSSSLLRHIKVIWETFKFEVALRLEILAMRLTALLLRVLARLGFAPKAKDVSQYLEM", "length": 580, "header": "tr|A0A8C2M8N0-1|A0A8C2M8N0_CRIGR Isoform 1 of Uncharacterized aarF domain-containing protein kinase 5 isoform X1 OS=Cricetulus griseus OX=10029 GN=Adck5 PE=3 SV=1 CANONICAL=A0A8C2M8N0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8N0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0/entry", "sequence": { "sequence": "MWRPMRLCHFHSALLQNRQKPWPCPAIFFRRNFKSPMARTSRTRLLWRRTLSATVVGVPLLLGARYFTAEAQEKRRLRLAVDGIGRFGRSLKVGLLISLDYWWCTNVILRGVEENSPGYVKVMSACHQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPPEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAKLHDGTAVAVKVQYIDLRDRFDGDVHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNSERCAQELKHFHYVVVPRVHWDKSSKRVLTADFCEGCKVNDTEAIKRQGLAVQDVAKKLIQTFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDSAAMKTHAAELGVQDYMLFSEVLMQRPVRLGQLWGSHLLSREETVYMQDMAREHFEGIMEVLKALPRPMLLVLRNINTVRAINSTLGTPVDRYFLMAKSAVWGWSRLVGAAYHGIYSSSLLRHIKVIWETFKFEVALRLEILAMRLTALLLRVLARLGFAPKAKDVSQYLEM", "length": 580, "header": "tr|A0A8C2M8N0-1|A0A8C2M8N0_CRIGR Isoform 1 of Uncharacterized aarF domain-containing protein kinase 5 isoform X1 OS=Cricetulus griseus OX=10029 GN=Adck5 PE=3 SV=1 CANONICAL=A0A8C2M8N0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLI0/entry", "sequence": { "sequence": "MLSYEEWRSPGYVKVMSACHQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPPEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAKLHDGTAVAVKVQYIDLRDRFDGDVHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNSERCAQELKHFHYVVVPRVHWDKSSKRVLTADFCEGCKVNDTEAIKRQGLAVQDVAKKLIQTFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDSAAMKTHAAELGVQDYMLFSEVLMQRPVRLGQLWGSHLLSREETVYMQDMAREHFEGIMEVLKALPRPMLLVLRNINTVRAINSTLGTPVDRYFLMAKSAVWGWSRLVGAAYHGIYSSSLLRHIKVIWETFKFEVALRLEILAMRLTALLLRVLARLGFAPKAKDVSQYLEM", "length": 473, "header": "tr|A0A9J7FLI0-1|A0A9J7FLI0_CRIGR Computationally mapped isoform of Uncharacterized aarF domain-containing protein kinase 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Adck5 PE=3 SV=1 CANONICAL=A0A8C2M8N0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GR12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GR12/entry", "sequence": { "sequence": "MWRPMRLCHFHSALLQNRQKPWPCPAIFFRRNFKSPMARSLKVGLLISLDYWWCTNVILRGVEENSPGYVKVMSACHQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPPEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAKLHDGTAVAVKVQYIDLRDRFDGDVHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNSERCAQELKHFHYVVVPRVHWDKSSKRVLTADFCEGCKVNDTEAIKRQGLAVQDVAKKLIQTFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDSAAMKTHAAELGVQDYMLFSEVLMQRPVRLGQLWGSHLLSREETVYMQDMAREHFEGIMEVLKALPRPMLLVLRNINTVRAINSTLGTPVDRYFLMAKSAVWGWSRLVGAAYHGIYSSSLLRHIKVIWETFKFEVALRLEILAMRLTALLLRVLARLGFAPKAKDVSQYLEM", "length": 530, "header": "tr|A0A9J7GR12-1|A0A9J7GR12_CRIGR Computationally mapped isoform of Uncharacterized aarF domain-containing protein kinase 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Adck5 PE=3 SV=1 CANONICAL=A0A8C2M8N0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8N0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8N0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762357", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762357", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1Q5S6-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5", "gene_name": "adck5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAETFRSLRLCRHHMSLLRKCPRLIAPQVFHQKFSSNRVVKGHRLFRKLLLGVSVGVPLVVGVQYVVSEPRERRKMKMLTEGIGRFCRSLYVGLMISADYWWTSNIALRGMDESSPEFLKQMSACHQRAASNMVDGAIQNGGLYIKLGQGLCAFNHLLPPEYIQTLHVLEDKALNRRYKEVDALFQEDFNMTPDKMFRTFDYEPVAAASLAQVHKAELHDGTPVAVKVQYIDLRDRFDGDIRTLEILLDVIKFMHPSFGFRWVLQDLKGTLAQELDFENEGRNSERCAEELKHFKFVVVPKVFWDVTSKRVLTAEYCDGCKINNVEEIQRQGLSLKDTADKLIRIFAEQIFYTGFIHADPHPGNVLVRRGPDKKAELVLLDHGLYEHLSKSDRAALCQLWRAIILRDDAGMKTYANQLGVKEYFLFSEMLLQRPINMWDLGLGNILTGEETSYMRDMAINRFDKIMQVLKSMPRPMLLVFRNINTVRCINITLGAPVDRYFIMAKCAVRGHGRAQAEDIRLFSRLSVFRWVCSFWESLKFEFALRSEMALMSVTRSLLKLLAFCNMVTLDQDVFQYLK", "length": 579 }, "evidence": [ { "id": "A0A8C2M8N0", "url": "https://omabrowser.org/oma/group/A0A8C2M8N0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RSN7-1", "protein_name": "AarF domain containing kinase 5", "gene_name": "ADCK5", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MWRPSQLCHVHSALLQGRLKPWPSPATFFRRHLRVPPAKWSLRPQPLWRKALSVTAVGAPLLLGVRYFTAEPQERRRMRLVVDGVGRFGRSLRVGLQISLDYWWCTHVVLRGVEENSPRYLEVMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPPEYIRTLRVLEDRALTRGIQEVDELFLEDFQAPPRELFRDFDYQPIAAASLAQVHRARLHDGTEVAVKVQYIDLRDRFEGDIHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNAERCARELRHFRYVVVPRVHWDTSSKRVLTADFYEGCKVNDVEAIKTMGLAVRDIAEKLIQAFAEQIFYTGFIHSDPHPGNVLVRRGPDGKAQLVLLDHGLYQFLDAKDRSALCQLWRAIILRDEAAMKTHAAALGVQDYLLFSEVLMQRPVRLGQLWRSNLLSREEAAYMRDMAREHFEEVMAVLKALPRPMLLVLRNVNTVRAINTALGAPVDRYFLMAKSAVRGWSRLAGTGRQDAYGARLLRHVRVVWETFKFEVALRLETLSMQLTALLVRVLVHLGLLPEAQGLYEYLET", "length": 581 }, "evidence": [ { "id": "A0A8C2M8N0", "url": "https://omabrowser.org/oma/group/A0A8C2M8N0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "G3V9I7-1", "protein_name": "AarF domain containing kinase 5", "gene_name": "Adck5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPQATSRGRCGVAEVVTSRLGGVALPLYPGLCGECGPVRKRIAYSFAGSAEQWGRLRRNREESTAGDMWRPMRLCHFHSTLLQSRQKPWPCPAIFFRRNFKSPLARTSRTRLLWRRTFSATVVGTPFLFGAHYFMAESSERRKLRLAVDGIGRFGRSVKIGFFISLDYWWCTNVVLRGVEENSPKYVEIMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPTEYIQTLRVLEDKALTRGFREVDELFLEDFQALPSELFQEFDYEPMAAASLAQVHRAKLQDGTAVAVKVQYIDLRDRFDGDVHTLELLLRLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNSERCAQELKHFHHVVIPRVYWDKSSKRVLTADFCDGCKVNDMEGIKSQGLAVQDVATKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDDAAMKTHAAALGVQDYMLFSEVLMQRPVRLGQLWGSHLISREEAAYMQDMAREHFDGIMEVLKSLPRPMLLVLRNINTVRAINSSLGTPVDRYFLMAKSAVWGWSRLVGAAYQGIYSSRLLRHIKVIWEALKFEVILRLEILAMRFTALMLRVMVRLGFAPKAEAEEVYQYLEM", "length": 649 }, "evidence": [ { "id": "A0A8C2M8N0", "url": "https://omabrowser.org/oma/group/A0A8C2M8N0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3MIX3-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5", "gene_name": "ADCK5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWRPVQLCHFHSALLHSRQKPWPSPAVFFRRNVRGLPPRFSSPTPLWRKVLSTAVVGAPLLLGARYVMAEAREKRRMRLVVDGMGRFGRSLKVGLQISLDYWWCTNVVLRGVEENSPGYLEVMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPPEYTRTLRVLEDRALKRGFQEVDELFLEDFQALPHELFQEFDYQPIAAASLAQVHRAKLHDGTSVAVKVQYIDLRDRFDGDIHTLELLLRLVEVMHPSFGFSWVLQDLKGTLAQELDFENEGRNAERCARELAHFPYVVVPRVHWDKSSKRVLTADFCAGCKVNDVEAIRSQGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLEEKDRAALCQLWRAIILRDDAAMRAHAAALGVQDYLLFAEMLMQRPVRLGQLWGSHLLSREEAAYMVDMARERFEAVMAVLRELPRPMLLVLRNINTVRAINVALGAPVDRYFLMAKRAVRGWSRLAGATYRGVYGTSLLRHAKVVWEMLKFEVALRLETLAMRLTALLARALVHLSLVPPAEELYQYLET", "length": 580 }, "evidence": [ { "id": "A0A8C2M8N0", "url": "https://omabrowser.org/oma/group/A0A8C2M8N0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80V03-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5", "gene_name": "Adck5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRPMRLCHFHSTLLQSRQKPWPCPAIFFRRNFKSPPARTSRARLLWRRALSATVVGTPFLLGAYYFMAEASERRKLRLAVDGIGRFGRSVKIGLFISTDYWWCTNVVLRGVEENSPKYVEIMSACHQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPTEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAKLHDGTDVAVKVQYIDLRDRFDGDVQTLELLLRLVELMHPSFGFSWVLQDLKGTLVQELDFENEGRNAERCAQELKHFHYVVIPRVHWDRSSKRVLTADFCNGCKVNDMEGIKSQGLAVQDVAKKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDNAAMKKHAAALGVQDYMLFSEVLMQRPVRLGQLWGSHLISREEAAYMQDMAREHFDGIMEVLKALPRPMLLVLRNINTVRAINSNLGTPVDRYFLMAKSAVWGWSRLVGAAYQGIYGSSLLRHIKVLWEALKFEMALRLEILAMRLTALMLRVLVRLGFAPKAEAEEVYQYLEM", "length": 582 }, "evidence": [ { "id": "A0A8C2M8N0", "url": "https://omabrowser.org/oma/group/A0A8C2M8N0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VTG5-1", "protein_name": "AarF domain containing kinase 5, isoform A", "gene_name": "Adck5", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRPLQRVRQLLSLGTRIRGKRALNGLREANVQKGGRPVLRFSLLAAGAGGLAYDGIVNDFTYCGASVRFVRSLKTAGLIAADYLRLDENDPEYETKVKLLHKKSAERLLETCLLNGGLYIKVGQGFAAINDILPVEYTSTLSLLQDRCLPTTQADVQKVFRKDFGQLPEEIYQEFDYQPVAAASLAQVFKARLPSGEQVAVKVQYNDLQKRFISDLGTIIFLQDIVEFFFKDYNFGWILNDLRKNLVLELNFLQEGQNAERCAKDMEKFSYVHVPKVHWSYTKTRVLTLEWMDGCKISDLKTIEKEKLSLKDIDVKLFEAFAEQIFYTGFVHADPHPGNIFVRKNRKNGRADIILLDHGLYEELPQNVRGPLCEFWEATVLRQENRMQAAAEKIGIGDYMRFAEVLFQQPIRNRGGGIRGKLTQEDIDHMQEIARNNFEHIMGTLKEMPRSMLFVVRNLNTVRAISHQHGDVVNRPRVMARYAQKCLYMQHNRRSPVQYIRWLSGRIYFEYCLFLSAFKLYLLDWYFNILYLVGRAPASARTVMKDIMQPPEPNVLK", "length": 557 }, "evidence": [ { "id": "A0A8C2M8N0", "url": "https://omabrowser.org/oma/group/A0A8C2M8N0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8N0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 324, "end_pos": 326, "annotation": "n_glycosylation_sequon" }, { "start_pos": 491, "end_pos": 493, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M8N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8N0" }, { "id": "PF03109", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC1 atypical kinase-like", "eco_id": "ECO_0000259", "start_pos": 170, "end_pos": 414, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 324, "end_pos": 326 }, { "start_pos": 491, "end_pos": 493 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M8R7-1", "uniprot_ac": "A0A8C2M8R7", "uniprot_id": "A0A8C2M8R7_CRIGR", "mass": { "chemical_mass": 40518.0, "monoisotopic_mass": 40518.0 }, "refseq": { "ac": "XP_003506936", "name": "aflatoxin B1 aldehyde reductase member 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506936" }, "gene_names": [ { "name": "LOC100751755", "type": "recommended", "evidence": [ { "id": "A0A8C2M8R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7" } ] }, { "name": "LOC100751755", "type": "synonym", "evidence": [ { "id": "XP_003506936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506936" } ] } ], "protein_names": [ { "name": "Aflatoxin B1 aldehyde reductase member 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2M8R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7/entry#names_and_taxonomy" } ] }, { "name": "aflatoxin B1 aldehyde reductase member 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003506936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506936" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 92 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614302.1) and transcript sequence (IACG01107349.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003506936.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506936", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506936" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751755", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7", "locus": {} } ], "crossref": [ { "id": "cd19075", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19075", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751755", "url": "https://www.ncbi.nlm.nih.gov/gene/100751755", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751755", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751755", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M8R7", "url": "https://www.orthodb.org/?gene=A0A8C2M8R7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43364:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43364:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506936", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506936", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M8R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRAASRAVVRAAARSARRSGPSVARPLAMSRPPPLGATSGAPLRPATVLGTMEMGRRMDASASAATVRAFMERGHSELDTAFMYCDGQSESILGGLGLGLGSGDCTVKIATKANPWDGKSLKPDSVRSQLETSLKRLQCPRVDLFYLHAPDHSTPIEETLRACHQLHQEGKFVELGLSNYASWEVAEVCTLCKSNSWILPTVYQGMYNATTRQVEKELLPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQPVGRFFGNSWAETYRNRFWKEHHFEAIALVEKALQTTYGSSAPSMTSAALRWMYHHSQLQGNRGDAVILGMSSLEQLEQNLAATEEGPLEPAVVDAFNQAWNLVAHECPNYFR", "length": 367, "header": "tr|A0A8C2M8R7-1|A0A8C2M8R7_CRIGR Isoform 1 of Aflatoxin B1 aldehyde reductase member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751755 PE=3 SV=1 CANONICAL=A0A8C2M8R7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7/entry", "sequence": { "sequence": "MLRAASRAVVRAAARSARRSGPSVARPLAMSRPPPLGATSGAPLRPATVLGTMEMGRRMDASASAATVRAFMERGHSELDTAFMYCDGQSESILGGLGLGLGSGDCTVKIATKANPWDGKSLKPDSVRSQLETSLKRLQCPRVDLFYLHAPDHSTPIEETLRACHQLHQEGKFVELGLSNYASWEVAEVCTLCKSNSWILPTVYQGMYNATTRQVEKELLPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQPVGRFFGNSWAETYRNRFWKEHHFEAIALVEKALQTTYGSSAPSMTSAALRWMYHHSQLQGNRGDAVILGMSSLEQLEQNLAATEEGPLEPAVVDAFNQAWNLVAHECPNYFR", "length": 367, "header": "tr|A0A8C2M8R7-1|A0A8C2M8R7_CRIGR Isoform 1 of Aflatoxin B1 aldehyde reductase member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751755 PE=3 SV=1 CANONICAL=A0A8C2M8R7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751755", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751755", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8R7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M8R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8R7" }, { "id": "PF00248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NADP-dependent oxidoreductase", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 355, "start_aa": "Val", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M945-1", "uniprot_ac": "A0A8C2M945", "uniprot_id": "A0A8C2M945_CRIGR", "mass": { "chemical_mass": 162327.0, "monoisotopic_mass": 162327.0 }, "refseq": { "ac": "XP_027256717", "name": "zinc finger protein 608 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256717" }, "gene_names": [ { "name": "LOC100754481", "type": "recommended", "evidence": [ { "id": "A0A8C2M945", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" } ] }, { "name": "LOC100754481", "type": "synonym", "evidence": [ { "id": "XP_027256717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256717" } ] } ], "protein_names": [ { "name": "Zinc finger protein 608 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2M945", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 608 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027256717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256717" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256717" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754481", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945", "locus": {} } ], "crossref": [ { "id": "100754481", "url": "https://www.ncbi.nlm.nih.gov/gene/100754481", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754481", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754481", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M945", "url": "https://www.orthodb.org/?gene=A0A8C2M945", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21564", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21564", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21564:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21564:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256717", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M945-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF64-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVNVSTAGKGVDPNTVDTYDSGDDWEIGVGNLIIDLDADLEKDRQKFEMNNPTNTTTNSNTKDCGGPASNGTGATSALADGLKFASVQPSAPQGNSHKETSKSKVKRAKTSKDANKSLPSAALYGIPEISSTGKRQEVQGRPGEATGMNSALGQSVSGGGGGGGNPNSNGTNTGASAATAGASSCGKNKEEKPGKSHSSRGAKRDKDAARSRKDKHDLLQVHQNGSGGQAPSGGHLYGFGSKSNGSGASPFHCGGAGSGSVAAAGEVSKSASDSALMGNSMLVKKEEEEEENHRRIKKLKTEKVDPLFTVPAPPPPIASSLAPQILPSYFSPSSSNIAAPVEQLLVRTRSVGVNTCEVGVVTEPECLGPCEPGTSVNLEGIVWHETEEGVLVVNVTWRNKTYVGTLLDCTKHDWAPPRFCESPTSDLEMRGGRGRGKRARSAAAAPGSEVSFTESRGLQSKNRGGANGKGRRGSLNASGRRTPPNCAAEDIKASPSSTNKRKNKPPMELDLNSSSEDSKPGKRVRTNSRSTPTTPQGKPETTFLDQGCSSPVLIDCPHPNCNKKYKHINGLRYHQAHAHLDPENKLEFEPDSEDKISDCEEALSNVALECSEASTSVSAYDQVKAPSSPGAGNPPGTPKGKRELMSNGPGSIIGSKTGKNSGKKKGLNNELNNLPVISNMTATLDSCSAADSSLAAEMPKLEAEGLIDKKSLGDKEKGKKANNCKMDKNLSKLKSARPIAPAPAPTPPQLIAIPTAAFTSTTTGTIPGLPSLTTTVVQATPKSPPLKPIQPKPTIMGEPITVNPALVSLKDKKKKEKRKLKDKDGKETGGPKMDAKLGKLEDAKAAGKDLSGHFLKDHLSKSEGLANGLSESQESRMASIKAEADKVYTFTDNAPSPSIGSASRMECSTLVNGQAPMVPLHVLTQNGAENSAAKTNSPAYSDISDAADDGGSDSRSEGMRSKASSPSDIISNKDGVVKGHSSTSAQSSQLKESHSPYYHGYEPYYSPSYMHPGQVGAPTAGNGGSTQGMKIKKESEEDAEKKDKAEQLDSKKVDHNSTSLQPQHQSVITQRHPALAQSLYYGQYAYGLYMDQKSLMATSPAYRQQYEKYYEDQRLAEQKMVQSGRGECERKAELPLKELGKEDSKQKNMPSATISKAPSTPEPNKNHSKLGPSVPNKTEDTGKSQLLSSHQPQLQADSFKTKQMENHQLIKEAVEMKSVMDSMKQTGVDPTSRFKQDPESRTWHHYVYQPKYLDQQKPEELDREKKLKEDSPRKTPNKESGVPSLPVSLTNIKEEPKEAKRPDSQSVEESKLKNDDGKTPVNWKDSRGTRVAVSSPMSQHQSYIQYLHAYPYPQMYDPSHPAYRAVSPVLMHSYPGAYLSPGFHYPVYGKMSGREEAEKVNTSPSINTKTASEAKALDLLQHHANQYRSKSPAPVEKASTERERETERDRDRHSPFGQRHLHTHHHTHVGMGYPLIPGQYDPFQGLTSAALVASQQVAAQASASGMFPAQRRE", "length": 1514, "header": "tr|A0A8C2M945-1|A0A8C2M945_CRIGR Isoform 1 of Zinc finger protein 608 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754481 PE=4 SV=1 CANONICAL=A0A8C2M945-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M945-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945/entry", "sequence": { "sequence": 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"length": 1514, "header": "tr|A0A8C2M945-1|A0A8C2M945_CRIGR Isoform 1 of Zinc finger protein 608 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754481 PE=4 SV=1 CANONICAL=A0A8C2M945-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCZ5/entry", "sequence": { "sequence": 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"length": 1221, "header": "tr|A0A9J7FCZ5-1|A0A9J7FCZ5_CRIGR Computationally mapped isoform of Zinc finger protein 608 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100754481 PE=4 SV=1 CANONICAL=A0A8C2M945-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEY7/entry", "sequence": { "sequence": 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"length": 1232, "header": "tr|A0A9J7JEY7-1|A0A9J7JEY7_CRIGR Computationally mapped isoform of Zinc finger protein 608 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100754481 PE=4 SV=1 CANONICAL=A0A8C2M945-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF64-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF64/entry", "sequence": { "sequence": "MSVNVSTAGKGVDPNTVDTYDSGDDWEIGVGNLIIDLDADLEKDRQKFEMNNPTNTTTNSNTKDCGGPASNGTGATSALADGLKFASVQPSAPQGNSHKETSKSKVKRAKTSKDANKSLPSAALYGIPEISSTGKRQEVQGRPGEATGMNSALGQSVSGGGGGGGNPNSNGTNTGASAATAGASSCGKNKEEKPGKSHSSRGAKRDKDAARSRKDKHDLLQVHQNGSGGQAPSGGHLYGFGSKSNGSGASPFHCGGAGSGSVAAAGEVSKSASDSALMGNSMLVKKEEEEEENHRRIKKLKTEKVDPLFTVPAPPPPIASSLAPQILPSYFSPSSSNIAAPVEQLLVRTRSVGVNTCEVGVVTEPECLGPCEPGTSVNLEGIVWHETEEGVLVVNVTWRNKTYVGTLLDCTKHDWAPPRFCESPTSDLEMRGGRGRGKRARSAAAAPGSEVSFTESRGLQSKNRGGANGKGRRGSLNASGRRTPPNCAAEDIKASPSSTNKRKNKPPMELDLNSSSEDSKPGKRVRTNSRSTPTTPQGKPETTFLDQGCSSPVLIDCPHPNCNKKYKHINGLRYHQAHAHLDPENKLEFEPDSEDKISDCEEALSNVALECSEASTSVSAYDQVKAPSSPGAGNPPGTPKGKRELMSNGPGSIIGSKTGKNSGKKKGLNNELNNLPVISNMTATLDSCSAADSSLAAEMPKLEAEGLIDKKSLGDKEKGKKANNCKMDKNLSKLKSARPIAPAPAPTPPQLIAIPTAAFTSTTTGTIPGLPSLTTTVVQATPKSPPLKPIQPKPTIMGEPITVNPALVSLKDKKKKEKRKLKDKDGKETGGPKMDAKLGKLEDAKAAGKDLSGHFLKDHLSKSEGLANGLSESQESRMASIKAEADKVYTFTDNAPSPSIGSASRMECSTLVNGQAPMVPLHVLTQNGAENSAAKTNSPAYSDISDAADDGGSDSRSEGMRSKASSPSDIISNKDGVVKGHSSTSAQSSQLKESHSPYYHGYEPYYSPSYMHPGQVGAPTAGNGGSTQGMKIKKESEEDAEKKDKAEQLDSKKVDHNSTSLQPQHQSVITQRHPALAQSLYYGQYAYGLYMDQKSLMATSPAYRQQYEKYYEDQRLAEQKMVQSGRGECERKAELPLKELGKEDSKQKNMPSATISKAPSTPEPNKNHSKLGPSVPNKTEDTGKSQLLSSHQPQLQADSFKTKQMENHQLIKEAVEMKSVMDSMKQTGVDPTSRFKQDPESRTWHHYVYQPKYLDQQKPEELDREKKLKEDSPRKTPNKESGVPSLPVSLTNIKEEPKEAKRPDSQSVEESKLKNDDGKTPVNWKDSRGTRVAVSSPMSQHQSYIQYLHAYPYPQMYDPSHPAYRAVSPVLMHSYPGAYLSPGFHYPVYGKMSGREEAEKVNTSPSINTKTASEAKALDLLQHHANQYRSKSPAPVEKASTERERETERDRDRHSPFGQRHLHTHHHTHVGMGYPLIPGQYDPFQGLTSAALVASQQVAAQASASGMFPAQRR", "length": 1513, "header": "tr|A0A9J7JF64-1|A0A9J7JF64_CRIGR Computationally mapped isoform of Zinc finger protein 608 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100754481 PE=4 SV=1 CANONICAL=A0A8C2M945-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 747, "start_aa": "Thr", "end_pos": 747, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr747", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754481", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754481", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M945", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1057, "end_pos": 1059, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1167, "end_pos": 1169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1177, "end_pos": 1179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1402, "end_pos": 1404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" 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[], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M945", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M945" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 557, "end_pos": 580, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 747 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1057, "end_pos": 1059 }, { "start_pos": 1167, "end_pos": 1169 }, { "start_pos": 116, "end_pos": 118 }, { "start_pos": 1177, "end_pos": 1179 }, { "start_pos": 1402, "end_pos": 1404 }, { "start_pos": 170, "end_pos": 172 }, { "start_pos": 225, "end_pos": 227 }, { "start_pos": 245, "end_pos": 247 }, { "start_pos": 395, "end_pos": 397 }, { "start_pos": 400, "end_pos": 402 }, { "start_pos": 477, "end_pos": 479 }, { "start_pos": 4, "end_pos": 6 }, { "start_pos": 513, "end_pos": 515 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 680, "end_pos": 682 }, { "start_pos": 71, "end_pos": 73 }, { "start_pos": 730, "end_pos": 732 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M9D8-1", "uniprot_ac": "A0A8C2M9D8", "uniprot_id": "A0A8C2M9D8_CRIGR", "mass": { "chemical_mass": 62585.0, "monoisotopic_mass": 62585.0 }, "refseq": { "ac": "XP_027278712", "name": "coiled-coil domain-containing protein 183 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278712" }, "gene_names": [ { "name": "Ccdc183", "type": "recommended", "evidence": [ { "id": "A0A8C2M9D8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9D8" } ] }, { "name": "Ccdc183", "type": "synonym", "evidence": [ { "id": "XP_027278712", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278712" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 183 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2M9D8", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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"database": "UniProtKB", "id": "A0A8C2M9S5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9S5" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M9S5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9S5" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M9S5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9S5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2M9S5", "database": "UniProtKB", "url": 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 113 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613638.1) and transcript sequence (IACG01044496.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652752", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652752" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M9U4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9U4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam133b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9U4", "locus": {} } ], "crossref": [ { "id": "100764219", "url": "https://www.ncbi.nlm.nih.gov/gene/100764219", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764219", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764219", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M9U4", "url": "https://www.orthodb.org/?gene=A0A8C2M9U4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J7H0", "url": "https://www.orthodb.org/?gene=A0A9J7J7H0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31911:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31911:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007652752", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652752", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M9U4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M9U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9U4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7H0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7H0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7H0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGNESSSKKRQKKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQTKKRKKKKSRCHKSPESSVSDSDSDSKDSSKKRKKSKDVTEKEKDTKGLSKKRKLYDDRALSTGSSSESDYEEVQAKRKKSGEERERTDKAKKRRKHKKHSKKKKKKAADSSSDSA", "length": 244, "header": "tr|A0A8C2M9U4-1|A0A8C2M9U4_CRIGR Isoform 1 of Protein FAM133B isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam133b PE=3 SV=1 CANONICAL=A0A8C2M9U4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M9U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9U4/entry", "sequence": { "sequence": "MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGNESSSKKRQKKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQTKKRKKKKSRCHKSPESSVSDSDSDSKDSSKKRKKSKDVTEKEKDTKGLSKKRKLYDDRALSTGSSSESDYEEVQAKRKKSGEERERTDKAKKRRKHKKHSKKKKKKAADSSSDSA", "length": 244, "header": "tr|A0A8C2M9U4-1|A0A8C2M9U4_CRIGR Isoform 1 of Protein FAM133B isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam133b PE=3 SV=1 CANONICAL=A0A8C2M9U4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7H0/entry", "sequence": { "sequence": "MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLLSGNESSSKKRQKKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQTKKRKKKKSRCHKSPESSVSDSDSDSKDSSKKRKKSKDVTEKEKDTKGLSKKRKLYDDRALSTGSSSESDYEEVQAKRKKSGEERERTARQSQEEKEA", "length": 226, "header": "tr|A0A9J7J7H0-1|A0A9J7J7H0_CRIGR Computationally mapped isoform of Protein FAM133B isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam133b PE=3 SV=1 CANONICAL=A0A8C2M9U4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A8C2M9U4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2M9V2-1", "uniprot_ac": "A0A8C2M9V2", "uniprot_id": "A0A8C2M9V2_CRIGR", "mass": { "chemical_mass": 42337.0, "monoisotopic_mass": 42337.0 }, "refseq": { "ac": "XP_007645871", "name": "fasciculation and elongation protein zeta-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645871" }, "gene_names": [ { "name": "Fez2", "type": "recommended", "evidence": [ { "id": "A0A8C2M9V2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9V2" } ] }, { "name": "Fez2", "type": "synonym", "evidence": [ { "id": "XP_007645871", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645871" } ] } ], "protein_names": [ { "name": "Fasciculation and elongation protein zeta-2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2M9V2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9V2/entry#names_and_taxonomy" } ] }, { "name": "fasciculation and elongation protein zeta-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007645871", "database": "RefSeq", "url": 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This record is derived from a genomic sequence (NW_003614333.1) and transcript sequence (IACG01089954.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007645871.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645871", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645871" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M9V2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9V2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fez2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9V2", "locus": {} } ], "crossref": [ { "id": "100765737", "url": "https://www.ncbi.nlm.nih.gov/gene/100765737", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765737", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765737", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M9V2", "url": "https://www.orthodb.org/?gene=A0A8C2M9V2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12394:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12394:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07763", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07763", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645871", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645871", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M9V2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M9V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9V2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MDJ0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MDJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAADGDWQDFYEFQEPARSVQDQENCNASPEAGAGAPAGGDSFPALACSLEEKLSLCFRPSKDAESPRATVRPITEHSLLQGDEIWNALTDNYGNVMPVDWKSSHTRALHLLTLNLSEKGMSDSLLFDTSDEEELREQLDMHSIIVSCVNEEPLFTADQVIEEIEEMMQESPDPEDDETPTQSDRLSMLSQEIQTLKRSSMSSYEERVKRLSVSELNELLEEIETAIKEYSEELVQQLALRDELEFEKEVENSFISALIEVQNRQKEHKETAKKKKKLKNGSSQNGRNERSHMPGTRFSMEGISNVIQNGLRHTFGNSGGEKQYLTTVIPYEKKNGPPSVEDLQILTKILRAMKEDSEKVPSLLTDYILKVLCPT", "length": 375, "header": "tr|A0A8C2M9V2-1|A0A8C2M9V2_CRIGR Isoform 1 of Fasciculation and elongation protein zeta-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fez2 PE=3 SV=1 CANONICAL=A0A8C2M9V2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M9V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9V2/entry", "sequence": { "sequence": "MAADGDWQDFYEFQEPARSVQDQENCNASPEAGAGAPAGGDSFPALACSLEEKLSLCFRPSKDAESPRATVRPITEHSLLQGDEIWNALTDNYGNVMPVDWKSSHTRALHLLTLNLSEKGMSDSLLFDTSDEEELREQLDMHSIIVSCVNEEPLFTADQVIEEIEEMMQESPDPEDDETPTQSDRLSMLSQEIQTLKRSSMSSYEERVKRLSVSELNELLEEIETAIKEYSEELVQQLALRDELEFEKEVENSFISALIEVQNRQKEHKETAKKKKKLKNGSSQNGRNERSHMPGTRFSMEGISNVIQNGLRHTFGNSGGEKQYLTTVIPYEKKNGPPSVEDLQILTKILRAMKEDSEKVPSLLTDYILKVLCPT", "length": 375, "header": "tr|A0A8C2M9V2-1|A0A8C2M9V2_CRIGR Isoform 1 of Fasciculation and elongation protein zeta-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fez2 PE=3 SV=1 CANONICAL=A0A8C2M9V2-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MDJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDJ0/entry", "sequence": { "sequence": "MAADGDWQDFYEFQEPARSVQDQENCNASPEAGAGAPAGGDSFPALACSLEEKLSLCFRPSKDAESPRATVRPITEHSLLQGDEIWNALTDNYGNVMPVDWKSSHTRALHLLTLNLSEKGMSDSLLFDTSDEEELREQLDMHSIIVSCVNEEPLFTADQVIEEIEEMMQESPDPEDDETPTQSDRLSMLSQEIQTLKRSSMSSYEERVKRLSVSELNELLEEIETAIKEYSEELVQQLALRDELEFEKEVENSFISALIEVQNRQKEHKETAKKKKKLKNGSSQNGRNERSHMPGTYLTTVIPYEKKNGPPSVEDLQILTKILRAMKEDSEKVPSLLTDYILKVLCPT", "length": 348, "header": "tr|A0A8C2MDJ0-1|A0A8C2MDJ0_CRIGR Computationally mapped isoform of Fasciculation and elongation protein zeta-2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fez2 PE=3 SV=1 CANONICAL=A0A8C2M9V2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614158.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016832647", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832647" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Xkr9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31", "locus": {} } ], "crossref": [ { "id": "100774892", "url": "https://www.ncbi.nlm.nih.gov/gene/100774892", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774892", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774892", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RDCRMKY", "url": "https://omabrowser.org/oma/group/RDCRMKY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MA31", "url": "https://www.orthodb.org/?gene=A0A8C2MA31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16024:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16024:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016832647", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016832647", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MA31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MA31-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9K8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9K8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKYTKCNFAMSVLGIIIYVTDLVADIFLSVRYFHNGQYVFGVLTLSFVLCGTLIVQCFSYSWLKDDLKKTGQENEHYFLLLHCFQGGVFTRYWFALRKGYDVVFKHSKRTSNFMEEKPDPHREAIDIATDLSMLRLFETYLEGCPQLILQLYAFLERGQANLSQYAVILISCCAISWSTVDYQVALRKSLPDKNLLRGVCPKLTYLFYKLFTLLSWTLSIVLLLFVDVKVALFLLLFLWIIGFIWAFIKQTKFCNSLSMEFLYRAVVGVILVFTFFNIKGQDTKCPMSCYYTVRVLGTLGILTVFWAYPLSIFNSEYFIPISAIVILALLLGIVFLTVYYGVFHPNRNIEAQHDETDGKSVQRDCRMRYFLMD", "length": 373, "header": "tr|A0A8C2MA31-1|A0A8C2MA31_CRIGR Isoform 1 of XK-related protein OS=Cricetulus griseus OX=10029 GN=Xkr9 PE=3 SV=1 CANONICAL=A0A8C2MA31-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MA31-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31/entry", "sequence": { "sequence": "MKYTKCNFAMSVLGIIIYVTDLVADIFLSVRYFHNGQYVFGVLTLSFVLCGTLIVQCFSYSWLKDDLKKTGQENEHYFLLLHCFQGGVFTRYWFALRKGYDVVFKHSKRTSNFMEEKPDPHREAIDIATDLSMLRLFETYLEGCPQLILQLYAFLERGQANLSQYAVILISCCAISWSTVDYQVALRKSLPDKNLLRGVCPKLTYLFYKLFTLLSWTLSIVLLLFVDVKVALFLLLFLWIIGFIWAFIKQTKFCNSLSMEFLYRAVVGVILVFTFFNIKGQDTKCPMSCYYTVRVLGTLGILTVFWAYPLSIFNSEYFIPISAIVILALLLGIVFLTVYYGVFHPNRNIEAQHDETDGKSVQRDCRMRYFLMD", "length": 373, "header": "tr|A0A8C2MA31-1|A0A8C2MA31_CRIGR Isoform 1 of XK-related protein OS=Cricetulus griseus OX=10029 GN=Xkr9 PE=3 SV=1 CANONICAL=A0A8C2MA31-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9K8/entry", "sequence": { "sequence": "MEEKPDPHREAIDIATDLSMLRLFETYLEGCPQLILQLYAFLERGQANLSQYAVILISCCAISWSTVDYQVALRKSLPDKNLLRGVCPKLTYLFYKLFTLLSWTLSIVLLLFVDVKVALFLLLFLWIIGFIWAFIKQTKFCNSLSMEFLYRAVVGVILVFTFFNIKGQDTKCPMSCYYTVRVLGTLGILTVFWAYPLSIFNSEYFIPISAIVILALLLGIVFLTVYYGVFHPNRNIEAQHDETDGKSVQRDCRMRYFLMD", "length": 260, "header": "tr|A0A9J7F9K8-1|A0A9J7F9K8_CRIGR Computationally mapped isoform of XK-related protein OS=Cricetulus griseus OX=10029 GN=Xkr9 PE=3 SV=1 CANONICAL=A0A8C2MA31-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774892", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774892", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XEX7-1", "protein_name": "XK-related protein", "gene_name": "XKR9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMKFTKWNFIFLLGGIIVYIADIGVDFWVASKYFYQGQYFWAVLILCFRGLSSLVTQIFSYHWFKNDWNGTHPGKLDWIFLVHFFHCGIFIRYWFALKYGCQAAFRQDSSGDVSETDPPNIIQKQAIDVLTDINMLRVFKTFLETTPQLFVQIYVLMEYNNHNFYQYAAIIISFCGISFSMVDYQISLRKSLPDKEELEALPKLVYLFYKLLTITSWILSISLITLLSVRSSVIVLILLWSCGFAWTLKQHTTFCKSKEMEYLYRTVVGIILLFTFFNIKGRKTKAYISIYYATHTIVTVGILLVCLFWKPAVIEKVHLTIVSGLAVISLVLGLIFLAVYYKYFHPTTYCKQRTFFDEVDRRGGDNMEVGRFQNFIMQ", "length": 378 }, "evidence": [ { "id": "A0A8C2MA31", "url": "https://omabrowser.org/oma/group/A0A8C2MA31/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1RU13-1", "protein_name": "XK-related protein", "gene_name": "XKR9", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKYTKLDFVTSVLGIIIYIIDLIVDIWVSIRFFHEGQYVPGVLTVSFVLFGTLVVQCFSYSWFKADLKKAGQEIQHCFLLLHCLQGGVFTRYWFALKRGYYVAFKYSSKTDNFVEEQIDPHKEVIDRVTDLSMLRLFDTYLEGCPQLALQLYTLLENGQANYTQYAAIMVSCCAISCSTVDYQIALRKSLPDKNPLKGPWPKLIYLFYKLFTLSSWMLSIVLLLFLNVKVALFLLLLLWFLGILWAFKEQTDFCASRSMEFIYRIVVGFILTFTFFNIKGQNTKCPMSCYYTVRVLTTLGIVIVFWFCPLSIFNSHYFIPISITIALTLLLGIIFLIVYYGTLHPNKSKETTLDEIDGKPVQRDCRMKYFLME", "length": 373 }, "evidence": [ { "id": "A0A8C2MA31", "url": "https://omabrowser.org/oma/group/A0A8C2MA31/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "G3MX52-1", "protein_name": "XK-related protein", "gene_name": "XKR9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKYTKFNFMMSVLGIMIYVTDLIVDIWVSVRFFHERQYVFGVLTVSFMLFGTLVVQCFSYSWFKADLKEAGQESHHCFLLLHCLQGGVFTRYWFALKQGYQVAFKYSSKTENFVEKQINDRVTDLSMLRLFETYLEGCPQLALQLYIFLEHGQANFTQYAAIMVSCCAVSWSTVDYQIALRKSLPDKNLLNGPCPKLVYLFYKLFTLLSWMLSVVLLLFLNVKIAFLLLFFLWILGIYWAFKKQTDFCVSTSMEILYRIVVGFILTFTFFNIKGQNTKCPMSCYYIVRVLVTLGILIVFWFYPLSIFNADYFIPVSITIVLSLLLGIIFLLVYYGTLHPNRSEETKLDEVDGKPIQRDCRMKHFLME", "length": 367 }, "evidence": [ { "id": "A0A8C2MA31", "url": "https://omabrowser.org/oma/group/A0A8C2MA31/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M9PHA4-1", "protein_name": "XK-related protein", "gene_name": "Xkr", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASAEQRTEVDALMMGPISKLSMLLTVVSILWRFVSICINWSLAYVYWMEESYGYCAWTIGSILVPMVVTSVIYIHTLKSAHAGEKRILERGVYSNAVISYLFRDVYVLNYAFKYSLAKERDDKQAEIEYYQKLMTEECNVSFVRLFDSFLESAPQKILQLAILLQSTLEFTYYRHIALIVYFGNIAWCIQAYNHSNRLAQLDKHDIAAKGRFLQFLFLLCLTVIRFYFVVSRTLCIAYVASIFPIETLIICATLACFYGTIVFFVDSPMIAKSRPMNYSYCLCFGVVYLFIFTPVKDAPTKYKYAFYLTFCLLQNIIACALYIPLYLATAIIALYIVGIVLLIIYYTYCHPNTVRTYF", "length": 359 }, "evidence": [ { "id": "A0A8C2MA31", "url": "https://omabrowser.org/oma/group/A0A8C2MA31/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q5GH54-1", "protein_name": "XK-related protein 9", "gene_name": "Xkr9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKYTICNFMMSVLGIIIYVTDLVADIVLTVRYFYDGQYVFGVLTLSFVLCGTLIVHCFSYSWLKDDLKKAGGENEHYFLLLHCLQGGVFTRYWFVLRTGYHVVFKHSHRTSNFMEEQTDPHKEAIDMATDLSMLRLFETYLEGCPQLILQLYAFLERGQANFSQYMVIMVSCCAISWSTVDYQIALRKSLPDKNLLRGFWPKLTYLFYKLFTLLSWMLSVVLLLFVDVRTVLLLLLFLWTVGFIWAFINHTQFCNSLSMEFLYRLVVGFILVFTFFNIKGQNTKCPMSCYYTVRVLGTLGILTVFWIYPLSIFNSDYFIPISATIVLSLLFGIIFLGVYYGTYHPNINAGTQHDEPDGKAPQRDCRIRYFLMD", "length": 373 }, "evidence": [ { "id": "A0A8C2MA31", "url": "https://omabrowser.org/oma/group/A0A8C2MA31/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5GH62-1", "protein_name": "XK-related protein 9", "gene_name": "Xkr9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYTKCNFMMSVLGIIIYVTDLVADIVLSVRYFHDGQYVLGVLTLSFVLCGTLIVHCFSYSWLKADLEKAGQENERYFLLLHCLQGGVFTRYWFALRTGYHVVFKHSDRKSNFMEEQTDPHKEAIDMATDLSMLRLFETYLEGCPQLILQLYAFLECGQANLSQCMVIMVSCCAISWSTVDYQIALRKSLPDKNLLRGLWPKLMYLFYKLLTLLSWMLSVVLLLFVDVRVALLLLLFLWITGFIWAFINHTQFCNSVSMEFLYRIVVGFILVFTFFNIKGQNTKCPMSCYYTVRVLGTLGILTVFWIYPLSIFNSDYFIPISATIVLALLLGIIFLGVYYGNFHPNRNVEPQLDETDGKAPQRDCRIRYFLMD", "length": 373 }, "evidence": [ { "id": "A0A8C2MA31", "url": "https://omabrowser.org/oma/group/A0A8C2MA31/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5GH70-1", "protein_name": "XK-related protein 9", "gene_name": "XKR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKYTKQNFMMSVLGIIIYVTDLIVDIWVSVRFFHEGQYVFSALALSFMLFGTLVAQCFSYSWFKADLKKAGQESQHCFLLLHCLQGGVFTRYWFALKRGYHAAFKYDSNTSNFVEEQIDLHKEVIDRVTDLSMLRLFETYLEGCPQLILQLYILLEHGQANFSQYAAIMVSCCAISWSTVDYQVALRKSLPDKKLLNGLCPKITYLFYKLFTLLSWMLSVVLLLFLNVKIALFLLLFLWLLGIIWAFKNNTQFCTCISMEFLYRIVVGFILIFTFFNIKGQNTKCPMSCYYIVRVLGTLGILTVFWVCPLTIFNPDYFIPISITIVLTLLLGILFLIVYYGSFHPNRSAETKCDEIDGKPVLRECRMRYFLME", "length": 373 }, "evidence": [ { "id": "A0A8C2MA31", "url": "https://omabrowser.org/oma/group/A0A8C2MA31/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MA64-1", "uniprot_ac": "A0A8C2MA64", "uniprot_id": "A0A8C2MA64_CRIGR", "mass": { "chemical_mass": 18079.0, "monoisotopic_mass": 18079.0 }, "refseq": { "ac": "XP_027258204", "name": "CXXC motif containing zinc binding protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258204" }, "gene_names": [ { "name": "Czib", "type": "recommended", "evidence": [ { "id": "A0A8C2MA64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA64" } ] }, { "name": "Czib", "type": "synonym", "evidence": [ { "id": "XP_027258204", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258204" } ] } ], "protein_names": [ { "name": "CXXC motif containing zinc binding protein", "type": "recommended", "evidence": [ { "id": "A0A8C2MA64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA64/entry#names_and_taxonomy" } ] }, { "name": "CXXC motif containing zinc binding protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027258204", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258204" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 122 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613834.1) and transcript sequence (IACG01048669.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007640049.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640049", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640049" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAB8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAB8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Naa15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAB8", "locus": {} } ], "crossref": [ { "id": "100763666", "url": "https://www.ncbi.nlm.nih.gov/gene/100763666", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275359", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275359" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc105", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9", "locus": {} } ], "crossref": [ { "id": "IPR038949", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038949", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751575", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751575", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MAE9", "url": "https://www.orthodb.org/?gene=A0A8C2MAE9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35081", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35081", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35081:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35081:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03148", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03148", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027275359", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275359", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MAE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MAE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVVVSSTDRSRDARVGAPEWHQAAQATSRKAHLLTDRCGQEAVTMWQPKDSVLDPNVAHHLGRAAYMEPWRFRVEMLKGGGTLEKPPPGEGVTLWKGKMKPPAWYARLPLPMHRDAHAQQTAEVVHAHARGARLTAARLGRAQHQVNGQLRLLLRQREASDRRLSEVRKGLLINQQSVKLRAYRPKSEKIPDKADSMLVWEKEELKSMKRKMEKDMEKSETLLKALASCRDTLNFYCQERLQAVELMNQPLDKVLEQAGRHSWVDITRPPTPRTQGQKTPPPDPVGAYTPACAKALYEAKRLLMESKDTLAEMAKNEVDIQNQQQRISDSVCAYLAQKMRETLELKERMTMTLGLMRGTIHRCMKFNQEMYVTRGLIKGPLLKRDLEAREKLNRPLVRMYQKHVGTQLPEATHLAQGTDKLTRHNLHMEKNLEELRTTHDNLAWSLKCKKIGHDVDYDVVRLRQRQRHPQVCYGQAQCLFNNWDPFSTGNGTTFK", "length": 496, "header": "tr|A0A8C2MAE9-1|A0A8C2MAE9_CRIGR Isoform 1 of Coiled-coil domain-containing protein 105 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc105 PE=4 SV=1 CANONICAL=A0A8C2MAE9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MAE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9/entry", "sequence": { "sequence": "MPVVVSSTDRSRDARVGAPEWHQAAQATSRKAHLLTDRCGQEAVTMWQPKDSVLDPNVAHHLGRAAYMEPWRFRVEMLKGGGTLEKPPPGEGVTLWKGKMKPPAWYARLPLPMHRDAHAQQTAEVVHAHARGARLTAARLGRAQHQVNGQLRLLLRQREASDRRLSEVRKGLLINQQSVKLRAYRPKSEKIPDKADSMLVWEKEELKSMKRKMEKDMEKSETLLKALASCRDTLNFYCQERLQAVELMNQPLDKVLEQAGRHSWVDITRPPTPRTQGQKTPPPDPVGAYTPACAKALYEAKRLLMESKDTLAEMAKNEVDIQNQQQRISDSVCAYLAQKMRETLELKERMTMTLGLMRGTIHRCMKFNQEMYVTRGLIKGPLLKRDLEAREKLNRPLVRMYQKHVGTQLPEATHLAQGTDKLTRHNLHMEKNLEELRTTHDNLAWSLKCKKIGHDVDYDVVRLRQRQRHPQVCYGQAQCLFNNWDPFSTGNGTTFK", "length": 496, "header": "tr|A0A8C2MAE9-1|A0A8C2MAE9_CRIGR Isoform 1 of Coiled-coil domain-containing protein 105 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc105 PE=4 SV=1 CANONICAL=A0A8C2MAE9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751575", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751575", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9" } ], "pmid": "" }, { "name": "axonemal B tubule inner sheath", "id": "GO:0160112", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160112", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAE9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 491, "end_pos": 493, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 491, "end_pos": 493 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MAN6-1", "uniprot_ac": "A0A8C2MAN6", "uniprot_id": "A0A8C2MAN6_CRIGR", "mass": { "chemical_mass": 87972.0, "monoisotopic_mass": 87972.0 }, "refseq": { "ac": "XP_027268625", "name": "DISP complex protein LRCH3 isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268625" }, "gene_names": [ { "name": "Lrch3", "type": "recommended", "evidence": [ { "id": "A0A8C2MAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6" } ] }, { "name": "Lrch3", "type": "synonym", "evidence": [ { "id": "XP_027268625", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268625" } ] } ], "protein_names": [ { "name": "DISP complex protein LRCH3 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_027268625", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268625" }, { "id": "A0A8C2MAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268625", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268625" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrch3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6", "locus": {} } ], "crossref": [ { "id": "cd21272", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21272", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764207", "url": "https://www.ncbi.nlm.nih.gov/gene/100764207", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764207", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764207", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MAN6", "url": "https://www.orthodb.org/?gene=A0A8C2MAN6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268625", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268625", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MAL8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MAL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MAN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MAN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5J6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5J6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5J6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8U0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKQKASQSPQKQQPPGDGECPFPSRRSQHTDDSALLVSLSGMDGVSCVDTLPHSSAFTPLKSDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQDNLCSPSDILQLNLSVKRTVETLLSLGAHAEEPSFVSFSVQLVGFVAFYCAFMLTLCVLYYRLFPLS", "length": 795, "header": "tr|A0A8C2MAN6-1|A0A8C2MAN6_CRIGR Isoform 1 of DISP complex protein LRCH3 isoform X8 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MAL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAL8/entry", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKQKASQSPQKQQPPGDGECPFPSRRSQHTDDSALLVSLSGMDGVSCVDTLPHSSAFTPLKSDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQQQQQQQQQQQPQLSAV", "length": 779, "header": "tr|A0A8C2MAL8-1|A0A8C2MAN6_CRIGR Computationally mapped isoform of DISP complex protein LRCH3 isoform X8 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MAN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6/entry", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKQKASQSPQKQQPPGDGECPFPSRRSQHTDDSALLVSLSGMDGVSCVDTLPHSSAFTPLKSDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQDNLCSPSDILQLNLSVKRTVETLLSLGAHAEEPSFVSFSVQLVGFVAFYCAFMLTLCVLYYRLFPLS", "length": 795, "header": "tr|A0A8C2MAN6-1|A0A8C2MAN6_CRIGR Isoform 1 of DISP complex protein LRCH3 isoform X8 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWT3/entry", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKQKASQSPQKQQPPGDGECPFPSRRSQHTDDSALLVSDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQQQQQQQQQQQPQLSAV", "length": 755, "header": "tr|A0A9J7FWT3-1|A0A9J7FWT3_CRIGR Computationally mapped isoform of DISP complex protein LRCH3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ22/entry", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKSLSGMDGVSCVDTLPHSSAFTPLKSDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQQQQQQQQQQQPQLSAV", "length": 744, "header": "tr|A0A9J7GZ22-1|A0A9J7GZ22_CRIGR Computationally mapped isoform of DISP complex protein LRCH3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JY66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY66/entry", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKQKASQSPQKQQPPGDGESDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQQQQQQQQQQQPQLSAV", "length": 737, "header": "tr|A0A9J7JY66-1|A0A9J7JY66_CRIGR Computationally mapped isoform of DISP complex protein LRCH3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5J6/entry", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKQKASQSPQKQQPPGDGESLSGMDGVSCVDTLPHSSAFTPLKSDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQQQQQQQQQQQPQLSAV", "length": 761, "header": "tr|A0A9J7K5J6-1|A0A9J7K5J6_CRIGR Computationally mapped isoform of DISP complex protein LRCH3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8U0/entry", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGPVASGGNLSGANCGPSPGVGPGPVPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLVRLPEELAEVPLIRLDFSCNKITAIPVCYRNLRHLQVITLENNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRNSVVVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKGLDSSSLSSQFMAYIEQRRISHEGTPVKPIPIREFQKTEDMKRYSHQNRAPLEPSSVLSLPPSHNQLSNSDLELNQRRGQLIECTRREAQLAALQYEEEKIRTKQIQRGAVLDFVKSDDRVNVTSSFPTTETVHHSPAYSFPAATQRNEPQRPDSFLFRAAVRAETTKACASPLLSSAPATGPADPVTRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQQQQQQQQQQQPQLSAV", "length": 720, "header": "tr|A0A9J7K8U0-1|A0A9J7K8U0_CRIGR Computationally mapped isoform of DISP complex protein LRCH3 isoform X7 OS=Cricetulus griseus OX=10029 GN=Lrch3 PE=4 SV=1 CANONICAL=A0A8C2MAN6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAL8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAL8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAL8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAL8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764207", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764207", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "septin cytoskeleton organization", "id": "GO:0032185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032185", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MAN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 741, "end_pos": 743, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAN6" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 644, "end_pos": 759, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 24, "end_pos": 26 }, { "start_pos": 575, "end_pos": 577 }, { "start_pos": 741, "end_pos": 743 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MAX8-1", "uniprot_ac": "A0A8C2MAX8", "uniprot_id": "A0A8C2MAX8_CRIGR", "mass": { "chemical_mass": 24496.0, "monoisotopic_mass": 24496.0 }, "refseq": { "ac": "XP_027250100", "name": "protein FAM207A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250100" }, "gene_names": [ { "name": "Fam207a", "type": "recommended", "evidence": [ { "id": "A0A8C2MAX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAX8" } ] }, { "name": "Fam207a", "type": "synonym", "evidence": [ { "id": "XP_027250100", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250100" } ] } ], "protein_names": [ { "name": "Protein FAM207A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MAX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAX8/entry#names_and_taxonomy" } ] }, { "name": "protein FAM207A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027250100", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250100" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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"https://www.uniprot.org/uniprotkb/A0A9J7GEP1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPDSVIEDKTIELMNTSVMEDQNEDESPKKSALWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR", "length": 529, "header": "tr|A0A8C2MBA6-1|A0A8C2MBA6_CRIGR Isoform 1 of F-box/WD repeat-containing protein 11 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fbxw11 PE=4 SV=1 CANONICAL=A0A8C2MBA6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MBA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6/entry", "sequence": { "sequence": "MEPDSVIEDKTIELMNTSVMEDQNEDESPKKSALWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR", "length": 529, "header": "tr|A0A8C2MBA6-1|A0A8C2MBA6_CRIGR Isoform 1 of F-box/WD repeat-containing protein 11 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fbxw11 PE=4 SV=1 CANONICAL=A0A8C2MBA6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GD04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GD04/entry", "sequence": { "sequence": "MCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR", "length": 444, "header": "tr|A0A9J7GD04-1|A0A9J7GD04_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fbxw11 PE=4 SV=1 CANONICAL=A0A8C2MBA6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GEP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEP1/entry", "sequence": { "sequence": "MEDQNEDESPKKSALWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR", "length": 510, "header": "tr|A0A9J7GEP1-1|A0A9J7GEP1_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fbxw11 PE=4 SV=1 CANONICAL=A0A8C2MBA6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXP1/entry", "sequence": { "sequence": "MEPDSVIEDKTIELMISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR", "length": 508, "header": "tr|A0A9J7JXP1-1|A0A9J7JXP1_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 11 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fbxw11 PE=4 SV=1 CANONICAL=A0A8C2MBA6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772242", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772242", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "pmid": "" }, { "name": "positive regulation of circadian rhythm", "id": "GO:0042753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042753", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "pmid": "" }, { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MBA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBA6" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 154, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 515, "end_pos": 517 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MBF0-1", "uniprot_ac": "A0A8C2MBF0", "uniprot_id": "A0A8C2MBF0_CRIGR", "mass": { "chemical_mass": 32278.0, "monoisotopic_mass": 32278.0 }, "refseq": { "ac": "XP_027275045", "name": "PDZ domain-containing protein GIPC3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275045" }, "gene_names": [ { "name": "Gipc3", "type": "recommended", "evidence": [ { "id": "A0A8C2MBF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0" } ] }, { "name": "Gipc3", "type": "synonym", "evidence": [ { "id": "XP_027275045", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275045" } ] } ], "protein_names": [ { "name": "PDZ domain-containing protein GIPC3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027275045", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275045" }, { "id": "A0A8C2MBF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275045", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275045" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gipc3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0", "locus": {} } ], "crossref": [ { "id": "cd21180", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21180", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23079", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23079", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762933", "url": "https://www.ncbi.nlm.nih.gov/gene/100762933", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762933", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762933", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MBF0", "url": "https://www.orthodb.org/?gene=A0A8C2MBF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12259", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12259", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12259:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12259:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25082", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25082", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027275045", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275045", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MBF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MBF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSAATREPGVTETPARPRPRLVFRTQLAHGSPTGRIEGFTNVRELYAKIAEAFGIAPTEILFCTLNSHKVDMQKLLGGQIGLEDFIFAHVRGETKEVEVTKTEDALGLTITDNGAGYAFIKRIKEGSVINRIEAVCVGDSIEAINDHSIVGCRHYEVAKMLRELPKSQPFTLRLVQPRRAFDMIGQRSRSSKCSVEAKMSSGRETLRLRSRGAATVEEAPSDVEAAAARRVDDLLESYMGIRDPELAAAVVETARSSAGAQAFARGLDAVLGEFAFPDEFVVEVWAAIGEAHDACG", "length": 297, "header": "tr|A0A8C2MBF0-1|A0A8C2MBF0_CRIGR Isoform 1 of PDZ domain-containing protein GIPC3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gipc3 PE=3 SV=1 CANONICAL=A0A8C2MBF0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MBF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0/entry", "sequence": { "sequence": "MDSAATREPGVTETPARPRPRLVFRTQLAHGSPTGRIEGFTNVRELYAKIAEAFGIAPTEILFCTLNSHKVDMQKLLGGQIGLEDFIFAHVRGETKEVEVTKTEDALGLTITDNGAGYAFIKRIKEGSVINRIEAVCVGDSIEAINDHSIVGCRHYEVAKMLRELPKSQPFTLRLVQPRRAFDMIGQRSRSSKCSVEAKMSSGRETLRLRSRGAATVEEAPSDVEAAAARRVDDLLESYMGIRDPELAAAVVETARSSAGAQAFARGLDAVLGEFAFPDEFVVEVWAAIGEAHDACG", "length": 297, "header": "tr|A0A8C2MBF0-1|A0A8C2MBF0_CRIGR Isoform 1 of PDZ domain-containing protein GIPC3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gipc3 PE=3 SV=1 CANONICAL=A0A8C2MBF0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBF0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 164, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MBH0-1", "uniprot_ac": "A0A8C2MBH0", "uniprot_id": "A0A8C2MBH0_CRIGR", "mass": { "chemical_mass": 67305.0, "monoisotopic_mass": 67305.0 }, "refseq": { "ac": "XP_007647929", "name": "T-cell immunomodulatory protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647929" }, "gene_names": [ { "name": "Itfg1", "type": "recommended", "evidence": [ { "id": "A0A8C2MBH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBH0" } ] }, { "name": "Itfg1", "type": "synonym", "evidence": [ { "id": "XP_007647929", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647929" } ] } ], "protein_names": [ { "name": "T-cell immunomodulatory protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007647929", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647929" } ] }, { "name": "T-cell immunomodulatory protein isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2MBH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBH0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 446 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614656.1) and transcript sequence (IACG01066077.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007647929.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647929", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647929" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBH0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Itfg1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBH0", "locus": {} } ], "crossref": [ { "id": "100755490", "url": "https://www.ncbi.nlm.nih.gov/gene/100755490", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755490", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MBH0", "url": "https://www.orthodb.org/?gene=A0A8C2MBH0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13412:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13412:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13517", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13517", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23122", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23122", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647929", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647929", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MBH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MBH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K751", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K751", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K751-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K751-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGLLPSAGVLLAPLLLGLTVLSVGPAPARALHNVTAELFGAEAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQSAPYFKPKVLVSLKSHSALITSVVPGDYDGDSQMDVLLTYFPQNHTNNELGAVIFWGQNQTLNSKNMTILNRTFQDEPLIMDFNGDLIPDVFGITNESSQPQILLGGNLSWHPALSTKSKMRNPHSHAFIDLTEDFTADLFLTTLSASNTFQFEIWENLGGNFSLSSVFEKPKNLVVVGQSAFADFDGDGHMDHLLPGCEDKDCQKSAIYLMRSGTGQWVPVLQDFSSKGTLWGFVPFLHEEQPTSIPIPLTLHIGDYNMDGYPDALAILKNTSGSNQQAFLLENVPCNNASCEEVHRMFKVYWDLAGLNLIKDAMVATFFDIYEDGILDIIVLSKGYTKNDVAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYLKNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLFVGIPRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWSAKLYLTPSNIVLLTAVALIGVCIFILAIIAILHWQEKKADDREKRQEAHRFHFDAM", "length": 610, "header": "tr|A0A8C2MBH0-1|A0A8C2MBH0_CRIGR Isoform 1 of T-cell immunomodulatory protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Itfg1 PE=3 SV=1 CANONICAL=A0A8C2MBH0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MBH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBH0/entry", "sequence": { "sequence": "MAAGLLPSAGVLLAPLLLGLTVLSVGPAPARALHNVTAELFGAEAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQSAPYFKPKVLVSLKSHSALITSVVPGDYDGDSQMDVLLTYFPQNHTNNELGAVIFWGQNQTLNSKNMTILNRTFQDEPLIMDFNGDLIPDVFGITNESSQPQILLGGNLSWHPALSTKSKMRNPHSHAFIDLTEDFTADLFLTTLSASNTFQFEIWENLGGNFSLSSVFEKPKNLVVVGQSAFADFDGDGHMDHLLPGCEDKDCQKSAIYLMRSGTGQWVPVLQDFSSKGTLWGFVPFLHEEQPTSIPIPLTLHIGDYNMDGYPDALAILKNTSGSNQQAFLLENVPCNNASCEEVHRMFKVYWDLAGLNLIKDAMVATFFDIYEDGILDIIVLSKGYTKNDVAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYLKNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLFVGIPRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWSAKLYLTPSNIVLLTAVALIGVCIFILAIIAILHWQEKKADDREKRQEAHRFHFDAM", "length": 610, "header": "tr|A0A8C2MBH0-1|A0A8C2MBH0_CRIGR Isoform 1 of T-cell immunomodulatory protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Itfg1 PE=3 SV=1 CANONICAL=A0A8C2MBH0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K751-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K751/entry", "sequence": { "sequence": "MAAGLLPSAGVLLAPLLLGLTVLSVGPAPARALHNVTAELFGAEAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQSAPYFKPKVLVSLKSHSALITSVVPGDYDGDSQMDVLLTYFPQNHTNNELGAVIFWGQNQTLNSKNMTILNRTFQDEPLIMDFNGDLIPDVFGITNESSQPQILLGGNLSWHPALSTKSKMRNPHSHAFIDLTEDFTADLFLTTLSASNTFQFEIWENLGGNFSLSSVFEKPKNLVVVGQSAFADFDGDGHMDHLLPGCEDKDCQKSAIYLMRSGTGQWVPVLQDFSSKGTLWGFVPFLHEEQPTSIPIPLTLHIGDYNMDGYPDALAILKNTSGSNQQAFLLENVPCNNASCEEVHRMFKVYWDLAGLNLIKDAMVATFFDIYEDGILDIIVLSKGYTKNDVAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYLKNGSGYRTKS", "length": 488, "header": "tr|A0A9J7K751-1|A0A9J7K751_CRIGR Computationally mapped isoform of T-cell immunomodulatory protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Itfg1 PE=4 SV=1 CANONICAL=A0A8C2MBH0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613759.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003499932", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499932" } ] }, { "annotation": "Core component of the SHOC2-MRAS-PP1c (SMP) holophosphatase complex that regulates activation of the MAPK pathway. Acts as a scaffolding protein in the SMP complex. The SMP complex specifically dephosphorylates the inhibitory phosphorylation at 'Ser-259' of RAF1 kinase, 'Ser-365' of BRAF kinase and 'Ser-214' of ARAF kinase, stimulating their kinase activities. The SMP complex enhances the dephosphorylation activity and substrate specificity of PP1c.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6#function" }, { "database": "UniProtKB", "id": "ARBA00049970", "url": "https://www.uniprot.org/uniprotkb/ARBA00049970#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc20", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6", "locus": {} } ], "crossref": [ { "id": "100762897", "url": "https://www.ncbi.nlm.nih.gov/gene/100762897", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762897", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762897", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WINVKSN", "url": "https://omabrowser.org/oma/group/WINVKSN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MBS6", "url": "https://www.orthodb.org/?gene=A0A8C2MBS6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003499932", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499932", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MBS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MBS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRKMGEAVARVARRVNETVESGSDTLDLADCKLVSFPICIYKVLRNVSDQILLITLANNELKSLTSKFMTTFSQLRELHLEGNYLHRLPNEVSSLQHLKAIDLSRNQFRDFPEQLTTLPELETINLEENEIVDVPVEKLATMPALRVINLRLNPLSAEVRVIAPPLIKFDMLMSPEDAQAPPP", "length": 184, "header": "tr|A0A8C2MBS6-1|A0A8C2MBS6_CRIGR Isoform 1 of Leucine-rich repeat protein SHOC-2 OS=Cricetulus griseus OX=10029 GN=Lrrc20 PE=4 SV=1 CANONICAL=A0A8C2MBS6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MBS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6/entry", "sequence": { "sequence": "MLRKMGEAVARVARRVNETVESGSDTLDLADCKLVSFPICIYKVLRNVSDQILLITLANNELKSLTSKFMTTFSQLRELHLEGNYLHRLPNEVSSLQHLKAIDLSRNQFRDFPEQLTTLPELETINLEENEIVDVPVEKLATMPALRVINLRLNPLSAEVRVIAPPLIKFDMLMSPEDAQAPPP", "length": 184, "header": "tr|A0A8C2MBS6-1|A0A8C2MBS6_CRIGR Isoform 1 of Leucine-rich repeat protein SHOC-2 OS=Cricetulus griseus OX=10029 GN=Lrrc20 PE=4 SV=1 CANONICAL=A0A8C2MBS6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762897", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762897", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287A8F2-1", "protein_name": "Leucine rich repeat containing 20", "gene_name": "LRRC20", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLRKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVTDQIHLITLANNELKSLTSKFMTTFSQLRELHLEGNFLHRLPNEVSTLQHLKAIDLSRNHFHDFPEQLTTLPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGARAPPP", "length": 184 }, "evidence": [ { "id": "A0A8C2MBS6", "url": "https://omabrowser.org/oma/group/A0A8C2MBS6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0ZEN9-1", "protein_name": "Leucine-rich repeat protein SHOC-2", "gene_name": "LRRC20", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQRRMGEAVARVARRVNETVESQGDTLDLADCKLVAFPAGIYKAVRSVTQGIHRISLANNELKALGARFATTFSQLRELNLEGNLLHRLPQELGSLLHLRTINLARNKFRHFPEPLVAAPALESINLEGNEIAGQGGGAAGSRVQAARCQQRHWPTCPRCGASTCVPTLCALLYACSSGPWSPSSCYCHLRAMSPRPDMSLLPGAWRSAPWPRSSPRLPAAGTMCPMPD", "length": 229 }, "evidence": [ { "id": "A0A8C2MBS6", "url": "https://omabrowser.org/oma/group/A0A8C2MBS6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1LUD9-1", "protein_name": "Leucine rich repeat containing 20", "gene_name": "Lrrc20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRKMGEAVARVARKVNETVESSSDTLDLADCKLVSFPICIYKVLRNVSDQIHLITLANNELKSLTSKFMTTFSQLRELRLEGNYLYRLPNEVSSLQHLRAIDLSRNQFQDFPEQLTTLPALETINLEENEIVDVPVEKLAAMPALRTINLRLNPLSAEVRVIAPPLIKFDMLMTPEDTRAPLP", "length": 184 }, "evidence": [ { "id": "A0A8C2MBS6", "url": "https://omabrowser.org/oma/group/A0A8C2MBS6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CI70-1", "protein_name": "Leucine-rich repeat-containing protein 20", "gene_name": "Lrrc20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRKMGEAVARVARKVNETVESGSDTLDLADCKLVSFPICIYKVLRNVSDQIHLITLANNELKSLTSKFMTTFNQLRELRLEGNYLFRLPNEVSSLQHLRAIDLSRNQFQDFPEQLTTLPALETINLEENEIVDVPVEKLAAMPALRVINLRLNPLSADVRVIAPPLIKFDMLMSPEDTRAPPP", "length": 184 }, "evidence": [ { "id": "A0A8C2MBS6", "url": "https://omabrowser.org/oma/group/A0A8C2MBS6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TCA0-1", "protein_name": "Leucine-rich repeat-containing protein 20", "gene_name": "LRRC20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMTTFSQLRELHLEGNFLHRLPSEVSALQHLKAIDLSRNQFQDFPEQLTALPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGARAPLP", "length": 184 }, "evidence": [ { "id": "A0A8C2MBS6", "url": "https://omabrowser.org/oma/group/A0A8C2MBS6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 }, { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MBU8-1", "uniprot_ac": "A0A8C2MBU8", "uniprot_id": "A0A8C2MBU8_CRIGR", "mass": { "chemical_mass": 44259.0, "monoisotopic_mass": 44259.0 }, "refseq": { "ac": "XP_035300393", "name": "meiosis-specific protein MEI4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300393" }, "gene_names": [ { "name": "Mei4", "type": "recommended", "evidence": [ { "id": "A0A8C2MBU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ] }, { "name": "Mei4", "type": "synonym", "evidence": [ { "id": "XP_035300393", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300393" } ] } ], "protein_names": [ { "name": "Meiosis-specific protein MEI4 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MBU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8/entry#names_and_taxonomy" } ] }, { "name": "meiosis-specific protein MEI4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035300393", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300393" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300393", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300393" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mei4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8", "locus": {} } ], "crossref": [ { "id": "100765662", "url": "https://www.ncbi.nlm.nih.gov/gene/100765662", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765662", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765662", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MYDITQY", "url": "https://omabrowser.org/oma/group/MYDITQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MBU8", "url": "https://www.orthodb.org/?gene=A0A8C2MBU8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28575", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28575", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28575:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28575:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13971", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13971", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300393", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300393", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MBU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYU3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVQTWYLKTSKLALALAIIHSKPADRSSREYTEHLATLVAQKEPKCQSKVEALEAEVLQLRQQLFLSRISSGLFKNGHDVFPAVLPDQEPTSSENTLALMDDSGCVLSNEQRSEPAELSQHWLESCSPPSLLPLPLENKPYPALDNPPSSHMQFLQHLLELKKLTESSSLKIYLAHFEKDSSIVSESVLKLLDGLITFYRNPKLPSSSFWTQAVGTLARLASDFNLSNHILKKCSKKLEEFEKTLLQAIIGNSSINRFQVQHYVSQSLVTLGSCSVLRKSIILLLLSEVNSFVDHLGAINQDQGSYDVTRYENIFSLFWILEQLLQQEIQGDPALHIDHSSPEIQTFLQKHDETIFRLSDAFPLFTFYLWRLGILLNSAEMETVEKESFP", "length": 391, "header": "tr|A0A8C2MBU8-1|A0A8C2MBU8_CRIGR Isoform 1 of Meiosis-specific protein MEI4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mei4 PE=3 SV=1 CANONICAL=A0A8C2MBU8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MBU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8/entry", "sequence": { "sequence": "MDVQTWYLKTSKLALALAIIHSKPADRSSREYTEHLATLVAQKEPKCQSKVEALEAEVLQLRQQLFLSRISSGLFKNGHDVFPAVLPDQEPTSSENTLALMDDSGCVLSNEQRSEPAELSQHWLESCSPPSLLPLPLENKPYPALDNPPSSHMQFLQHLLELKKLTESSSLKIYLAHFEKDSSIVSESVLKLLDGLITFYRNPKLPSSSFWTQAVGTLARLASDFNLSNHILKKCSKKLEEFEKTLLQAIIGNSSINRFQVQHYVSQSLVTLGSCSVLRKSIILLLLSEVNSFVDHLGAINQDQGSYDVTRYENIFSLFWILEQLLQQEIQGDPALHIDHSSPEIQTFLQKHDETIFRLSDAFPLFTFYLWRLGILLNSAEMETVEKESFP", "length": 391, "header": "tr|A0A8C2MBU8-1|A0A8C2MBU8_CRIGR Isoform 1 of Meiosis-specific protein MEI4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mei4 PE=3 SV=1 CANONICAL=A0A8C2MBU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYU3/entry", "sequence": { "sequence": "MDVQTWYLKTSKLALALAIIHSKPADRSSREYTEHLATLVAQKEPKCQSKVEALEAEVLQLRQQLFLSRISSGLFKNGEYVKSHIENQEPTSSENTLALMDDSGCVLSNEQRSEPAELSQHWLESCSPPSLLPLPLENKPYPALDNPPSSHMQFLQHLLELKKLTESSSLKIYLAHFEKDSSIVSESVLKLLDGLITFYRNPKLPSSSFWTQAVGTLARLASDFNLSNHILKKCSKKLEEFEKTLLQAIIGNSSINRFQVQHYVSQSLVTLGSCSVLRKSIILLLLSEVNSFVDHLGAINQDQGSYDVTRYENIFSLFWILEQLLQQEIQGDPALHIDHSSPEIQTFLQKHDETIFRLSDAFPLFTFYLWRLGILLNSAEMETVEKESFP", "length": 390, "header": "tr|A0A9J7GYU3-1|A0A9J7GYU3_CRIGR Computationally mapped isoform of Meiosis-specific protein MEI4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mei4 PE=3 SV=1 CANONICAL=A0A8C2MBU8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765662", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765662", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LSX7-1", "protein_name": "Meiotic double-stranded break formation protein 4", "gene_name": "MEI4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDNQAWYLRTSKLALALAIIRSKPADKSSREYTEHLARMVSGQESRWRSKVEALEAEVLQLRQKLLLSRIFSGSFKSGDPSSQLQAQEPKSSENTPTLLEDSGCYLSSEQQTPSETPQCFGESQIPTPFSSLPIGSRPCAPPEEPLTSHMQFLQHLLGLKNLTESEYMKTDLSHFENASSTISDSVFQLLDGLIAFYRAPKLPCSSFWIEAIDTLARLIGHCNLSDHILRKCSTKLEEFEKTLLQVILRNNHINRFQVQRYVSRSLVTLGSCSLLRRSIISLLLSEVNSFADDLGAIDQVQANYDVARYENMFSVLWVLEQLLQKENKEDNSSKTGHEDQEIKKFLQKHDETVFKLSDAFPLFTFYLWRLGILLNSVEIGTVENDSLP", "length": 388 }, "evidence": [ { "id": "A0A8C2MBU8", "url": "https://omabrowser.org/oma/group/A0A8C2MBU8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A8MW99-1", "protein_name": "Meiosis-specific protein MEI4", "gene_name": "MEI4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVQKWYLRTSKLALALAIIRSKPADKSSREYTEHLAMLLSEEQSKWRSKVEILEAEVMQLRQKLLVSRLCSGSFKSGYVSSQLEAQEPKSSESTLTSMEDSGCDLSNEQRTESSDLSQHFVESCTPTHFPPLPLVKRPCAILQNPLSSHMQFLQYLLELKNLTESGNLKRDLTHFEKDSSTVSDSVFQLLDGLITFYRNPKLPFSRFWTEAVGTLASLISDYNLSSHILKKCSKKLEEFEKTLLHAILGNNHINQFQVQHYVSQSLVTLGNCSLLRKSIISLLLSEVNGFADDLGAINQEQASYDVSRYENIFYLFWVLEQLLQKETEEGNTSSIGHDDQEIKKFLQKHDETIFQLSDAFPLFTFYLWRVGILLSSAQIETLRK", "length": 385 }, "evidence": [ { "id": "A0A8C2MBU8", "url": "https://omabrowser.org/oma/group/A0A8C2MBU8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZCK1-1", "protein_name": "Meiotic double-stranded break formation protein 4", "gene_name": "Mei4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVQTWYLKTSKLALALAIIHSKPADRSSRQYAEQLAALVTQQESKQKSKVEALEAEVLQLRQKLFLSRISSGLFKNGHDVLPTLSDQDPTSSENTLTLMDDSGCVLSNEQRSEPAELSQHFVESSNPPPLLLLPLEKKPCATLENSLSSHMQFFQHLLALKRWTEPGRLTVYLTHFERDSCTVSESASQLLDGLIMFYRNPKLPFSSFWTEAVGTLARLASDFRLSNHIFKRCSKKLEEFEKTLLQAILGNNSINRFQVQRYVSQSLVTLGSCSLLRKSIVSLLLSEVNSFVDDLGAIDQDQSNYDVTRYENIFSLFWILEQLLQQETQGDPIPHIDPSSPEIQKFLQKHDETILRLSDAFPLLTFYLWRLGVLLNSPEMETVKTESLP", "length": 390 }, "evidence": [ { "id": "A0A8C2MBU8", "url": "https://omabrowser.org/oma/group/A0A8C2MBU8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BRM6-1", "protein_name": "Meiosis-specific protein MEI4", "gene_name": "Mei4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDIQPWYLKTSKLALALAIIHSKPADRSSREYTEYLASLVTQKESTWKSKLEALEAEVLQLRQKLLLSRISSGLFKNGPDVLPTLSDQEPTSSENTLTLMDDSGCVLSNEQRNEPAELSQHFVESTDPPLLPLPLEKRPRTTLENPLSSHMQFFQHLLELKKWTESSSLKVYLTHFEKDSSTVSDSVSQLLDALITFYRNPKLPFSSFWTEAVGTLARLASDFNLSNHIFKRCSKKLEEFEKTLLQAILENNSINRFQVQRYVSQSLVTLGSCSLLRKSIISLLLSEVNSFVDDLGAIDQDQGIYDVTRYENIFSLFWILEQVLQQAPQGDRTAHMDHSIPEMQTFLQKHDEVIFRLSDAFPLFAFYLWRLGVLLNSAEMETVKNESLP", "length": 389 }, "evidence": [ { "id": "A0A8C2MBU8", "url": "https://omabrowser.org/oma/group/A0A8C2MBU8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "pmid": "" }, { "name": "oogenesis", "id": "GO:0048477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048477", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "pmid": "" }, { "name": "homologous chromosome pairing at meiosis", "id": "GO:0007129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007129", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "pmid": "" }, { "name": "meiotic DNA double-strand break formation", "id": "GO:0042138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042138", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lateral element", "id": "GO:0000800", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000800", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MBU8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBU8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 226, "end_pos": 228 }, { "start_pos": 253, "end_pos": 255 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MC30-1", "uniprot_ac": "A0A8C2MC30", "uniprot_id": "A0A8C2MC30_CRIGR", "mass": { "chemical_mass": 17238.0, "monoisotopic_mass": 17238.0 }, "refseq": { "ac": "XP_035294718", "name": "gametocyte-specific factor 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294718" }, "gene_names": [ { "name": "LOC100768452", "type": "recommended", "evidence": [ { "id": "A0A8C2MC30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MC30" } ] }, { "name": "LOC100768452", "type": "synonym", "evidence": [ { "id": "XP_035294718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294718" } ] } ], "protein_names": [ { "name": "Gametocyte-specific factor 1-like", "type": "synonym", "evidence": [ { "id": "A0A8C2MC30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MC30/entry#names_and_taxonomy" } ] }, { "name": "gametocyte-specific factor 1-like", "type": "synonym", "evidence": [ { "id": "XP_035294718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294718" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613875.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502090", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502090" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754595", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9", "locus": {} } ], "crossref": [ { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754595", "url": "https://www.ncbi.nlm.nih.gov/gene/100754595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754595", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754595", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QECESRY", "url": "https://omabrowser.org/oma/group/QECESRY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MCE9", "url": "https://www.orthodb.org/?gene=A0A8C2MCE9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502090", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502090", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPILILSIFLLASGAGAEEIIGGHEVNPHSRPYMAFIQSVNNGGKKSRCGGFLVQDNFVLTSAHCLGSSMKVTLGAHNIKAQEETQQTIPVVKAFPHPDYNPKDQSNNIMLLKLERTAKRTKAVRPLNLPRRGVQVKPGDVCYVAGWGKMAPEGEYPNTLQEVELTVQKDQECEARYPGYYNKATEICVGDPKIKRAAFQGDVGGPLVCKKAAAGIIAFGYDDGSTPEVFTRVSSFLSWIKKTMKRS", "length": 248, "header": "tr|A0A8C2MCE9-1|A0A8C2MCE9_CRIGR Isoform 1 of Granzyme C-like OS=Cricetulus griseus OX=10029 GN=LOC100754595 PE=4 SV=1 CANONICAL=A0A8C2MCE9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9/entry", "sequence": { "sequence": "MSPILILSIFLLASGAGAEEIIGGHEVNPHSRPYMAFIQSVNNGGKKSRCGGFLVQDNFVLTSAHCLGSSMKVTLGAHNIKAQEETQQTIPVVKAFPHPDYNPKDQSNNIMLLKLERTAKRTKAVRPLNLPRRGVQVKPGDVCYVAGWGKMAPEGEYPNTLQEVELTVQKDQECEARYPGYYNKATEICVGDPKIKRAAFQGDVGGPLVCKKAAAGIIAFGYDDGSTPEVFTRVSSFLSWIKKTMKRS", "length": 248, "header": "tr|A0A8C2MCE9-1|A0A8C2MCE9_CRIGR Isoform 1 of Granzyme C-like OS=Cricetulus griseus OX=10029 GN=LOC100754595 PE=4 SV=1 CANONICAL=A0A8C2MCE9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754595", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754595", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LTB8-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "LOC786126", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVLLLLLVALLSPTGEAGKIIGGHEAKPHSRPYMAFLQVKTSGKSHNCGGFLVREDFVLTAAHCLGSSINVTLGAHNIMERERKQQVIPMRRAIPHPCYNKKTWANDIMLLKLTRKADITDAVSPIDLPRRLAKVKPGMMCSVAGWGQLGVNMPSTDKLQEVDLEVQSEEECIARFKKYIPSKQICAGNPSKRKNSFSGDSGGPLVCDGVAQGIVSYGRKDGTTPDVYTRISSFLSWIHSTMRRYKRQGSV", "length": 251 }, "evidence": [ { "id": "A0A8C2MCE9", "url": "https://omabrowser.org/oma/group/A0A8C2MCE9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MCE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCE9" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 246, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MCP3-1", "uniprot_ac": "A0A8C2MCP3", "uniprot_id": "A0A8C2MCP3_CRIGR", "mass": { "chemical_mass": 38481.0, "monoisotopic_mass": 38481.0 }, "refseq": { "ac": "XP_035295962", "name": "coiled-coil domain-containing protein 68", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295962" }, "gene_names": [ { "name": "Ccdc68", "type": "recommended", "evidence": [ { "id": "A0A8C2MCP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ] }, { "name": "Ccdc68", "type": "synonym", "evidence": [ { "id": "XP_035295962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295962" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 68", "type": "synonym", "evidence": [ { "id": "A0A8C2MCP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 68", "type": "synonym", "evidence": [ { "id": "XP_035295962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295962" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295962" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc68", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3", "locus": {} } ], "crossref": [ { "id": "100761099", "url": "https://www.ncbi.nlm.nih.gov/gene/100761099", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761099", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761099", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETEYIKQ", "url": "https://omabrowser.org/oma/group/ETEYIKQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MCP3", "url": "https://www.orthodb.org/?gene=A0A8C2MCP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23171:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23171:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035295962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295962", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTVTVTTEVSPRGKTEGDSVLYGSSSAHIIEETEYVKKIRTTLEKVRNHMFKDEEEHGNENYLLDAEQSGNFQNGSDLTTDPNSLDFLMENMRRKDQQLLEMNRENEMLKIKLEASREAGAAALRNVAQRLFDNYQTHSEDMKKKQEDGRRLLQINSLEKEQTLKQRAENLSQLSEKLEEKHGQIIGLENRVQRMENEKKTLLERKLCLESKLLQLKSHDVHSKSCQDLQTEISILQEQICHLQFVIHSQHQSLHSLIEEMEGLKNTLKEQDKNIENLKEKVNILEAQNKDLKTKVAHWSETPKTSVSKAVSTSELKTEGASPYLMLIRLRK", "length": 333, "header": "tr|A0A8C2MCP3-1|A0A8C2MCP3_CRIGR Isoform 1 of Coiled-coil domain-containing protein 68 OS=Cricetulus griseus OX=10029 GN=Ccdc68 PE=4 SV=1 CANONICAL=A0A8C2MCP3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3/entry", "sequence": { "sequence": "MTTVTVTTEVSPRGKTEGDSVLYGSSSAHIIEETEYVKKIRTTLEKVRNHMFKDEEEHGNENYLLDAEQSGNFQNGSDLTTDPNSLDFLMENMRRKDQQLLEMNRENEMLKIKLEASREAGAAALRNVAQRLFDNYQTHSEDMKKKQEDGRRLLQINSLEKEQTLKQRAENLSQLSEKLEEKHGQIIGLENRVQRMENEKKTLLERKLCLESKLLQLKSHDVHSKSCQDLQTEISILQEQICHLQFVIHSQHQSLHSLIEEMEGLKNTLKEQDKNIENLKEKVNILEAQNKDLKTKVAHWSETPKTSVSKAVSTSELKTEGASPYLMLIRLRK", "length": 333, "header": "tr|A0A8C2MCP3-1|A0A8C2MCP3_CRIGR Isoform 1 of Coiled-coil domain-containing protein 68 OS=Cricetulus griseus OX=10029 GN=Ccdc68 PE=4 SV=1 CANONICAL=A0A8C2MCP3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761099", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761099", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5Y0E9-1", "protein_name": "Coiled-coil domain containing 68", "gene_name": "Ccdc68", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTVTVTMEVPSGGKTEDRSIFSGPSSAQIIEETEYVRKIRTTLEKIRNRMFKEEDGRGNARHKVDAEQSGNVQNGLDSTTDPTRLDLLLESMRRKDQQLLEMNKENEVLQIKLEASREAGAAALRNAAQRLFDNYQTQSEDLEKKHKDSKHVLQVNKLEKEQTLKQRAKNLSQLSEKLGEKHEQIVGLENRVQRMENEKKALLERKLCLESKLLQLKSNAANSKSCQHLQTEISILQEQICHLQFVIHSQHQNLRNIIQEMEGLKNTLKEQDKKIENLKEKVTVLEAQNEELKTKVAHWTESPRTSVSKAVSTSELKTEGASPYLMLIRLRK", "length": 333 }, "evidence": [ { "id": "A0A8C2MCP3", "url": "https://omabrowser.org/oma/group/A0A8C2MCP3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BJG8-1", "protein_name": "Coiled-coil domain containing 68", "gene_name": "CCDC68", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTTVTGTATVPQGGKTEDDSAMYESPSAHIIEETEYVRKIRTTLEKIRNQIFRDEVRHNSANHKLDAKRCGNIQNGSDSAADFSGGSLDPLMERIKGKDLQLSEMNKENEVLKIKLEASREAGAVALRNVAQRLLENYQTRSEEVRKKHEDRRHLLQVDKLEKEQKLKQHVENLDQIAEKLEEKHKQITELENLVQRMEKEKRTLLEKKLSLENKLLHLKSNATNAKSCQDLQKEISLLQEQISHLQFVIHSQHQNLRSVIQEMEALKNNLKEQDKRIEDLQEKVNILEAQNKELKAKVALWPETPGTKVSKAVSTSELKTEDTTPYLMLVRLRK", "length": 335 }, "evidence": [ { "id": "A0A8C2MCP3", "url": "https://omabrowser.org/oma/group/A0A8C2MCP3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1S1Z2-1", "protein_name": "Coiled-coil domain containing 68", "gene_name": "CCDC68", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": 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"MTTVTVTTEVPSSGKTEDGHVFCDSSSAHIIEETEYVRQMRTTLEKIRNHMFKEKEGCGNARHKLDAEGSGNIQNGSDSTTDPTCLDLLMENMRRKDQQLLEMNRENEVLQIKLEASREAGAAALRNVAQRLFDNYQTQAGDLEKKHEGRKHLLQVNNLEKEQALKGSAESLNLLSEKLEEKHGQIVGLENRVQRMENEKKTLLEKKLRLESKLFQLKSNAANPKSCQDLQTEISILQEQISHLQFVIHSQHQNLRSIIQEMEGLKNTLKEQDTKIENLKEKVTVLEAQNKELKTRVAHWTETPRTLVSKAVSTSELKTEGASPYLMLIRLRK", "length": 333 }, "evidence": [ { "id": "A0A8C2MCP3", "url": "https://omabrowser.org/oma/group/A0A8C2MCP3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2F9-1", "protein_name": "Coiled-coil domain-containing protein 68", "gene_name": "CCDC68", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTTVTVTTEIPPRDKMEDNSALYESTSAHIIEETEYVKKIRTTLQKIRTQMFKDEIRHDSTNHKLDAKHCGNLQQGSDSEMDPSCCSLDLLMKKIKGKDLQLLEMNKENEVLKIKLQASREAGAAALRNVAQRLFENYQTQSEEVRKKQEDSKQLLQVNKLEKEQKLKQHVENLNQVAEKLEEKHSQITELENLVQRMEKEKRTLLERKLSLENKLLQLKSSATYGKSCQDLQREISILQEQISHLQFVIHSQHQNLRSVIQEMEGLKNNLKEQDKRIENLREKVNILEAQNKELKTQVALSSETPRTKVSKAVSTSELKTEGVSPYLMLIRLRK", "length": 335 }, "evidence": [ { "id": "A0A8C2MCP3", "url": "https://omabrowser.org/oma/group/A0A8C2MCP3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "pmid": "" }, { "name": "microtubule anchoring at centrosome", "id": "GO:0034454", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034454", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "pmid": "" }, { "name": "centriolar subdistal appendage", "id": "GO:0120103", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120103", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"mass": { "chemical_mass": 20005.0, "monoisotopic_mass": 20005.0 }, "refseq": { "ac": "XP_007648832", "name": "transmembrane protein 240 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648832" }, "gene_names": [ { "name": "Tmem240", "type": "recommended", "evidence": [ { "id": "A0A8C2MCQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ] }, { "name": "Tmem240", "type": "synonym", "evidence": [ { "id": "XP_007648832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648832" } ] } ], "protein_names": [ { "name": "Transmembrane protein 240 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MCQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 240 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007648832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648832" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 198 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614798.1) and transcript sequence (IACG01055467.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007648832.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007648832", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648832" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem240", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4", "locus": {} } ], "crossref": [ { "id": "100765368", "url": "https://www.ncbi.nlm.nih.gov/gene/100765368", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765368", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765368", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MCQ4", "url": "https://www.orthodb.org/?gene=A0A8C2MCQ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28666", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28666", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28666:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28666:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15207", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15207", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007648832", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648832", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMSANTMIFMILGASIVMAIACLMDMNALLDRFHNYILPHLRGEDRVCHCNCGRHHIHYVIPYDGDQSVVDASENYFVTDNVTKQEIDLMLGLLLGFCISWFLVWMDGVLHCAVRAWRAGRRYDGSWTWLPKLCSLRELGRRPHRPFEEPTGNMVHVKQKLYHNGHPSPRHL", "length": 173, "header": "tr|A0A8C2MCQ4-1|A0A8C2MCQ4_CRIGR Isoform 1 of Transmembrane protein 240 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem240 PE=4 SV=1 CANONICAL=A0A8C2MCQ4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4/entry", "sequence": { "sequence": "MSMSANTMIFMILGASIVMAIACLMDMNALLDRFHNYILPHLRGEDRVCHCNCGRHHIHYVIPYDGDQSVVDASENYFVTDNVTKQEIDLMLGLLLGFCISWFLVWMDGVLHCAVRAWRAGRRYDGSWTWLPKLCSLRELGRRPHRPFEEPTGNMVHVKQKLYHNGHPSPRHL", "length": 173, "header": "tr|A0A8C2MCQ4-1|A0A8C2MCQ4_CRIGR Isoform 1 of Transmembrane protein 240 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem240 PE=4 SV=1 CANONICAL=A0A8C2MCQ4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765368", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765368", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ], "pmid": "" }, { "name": "parallel fiber to Purkinje cell synapse", "id": "GO:0098688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098688", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ], "pmid": "" }, { "name": "cerebellar climbing fiber to Purkinje cell synapse", "id": "GO:0150053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150053", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ], "pmid": "" }, { "name": "TMEM240-body", "id": "GO:0160045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160045", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCQ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": 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"Protein Classification" ] }, { "id": "PTHR10906", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10906", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10559", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10559", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496448", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 476, "header": "tr|A0A8C2MCS6-1|A0A8C2MCS6_CRIGR Isoform 1 of Protein transport protein Sec61 subunit alpha isoform X1 OS=Cricetulus griseus OX=10029 GN=Sec61a2 PE=3 SV=1 CANONICAL=A0A8C2MCS6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6/entry", "sequence": { "sequence": "MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 476, "header": "tr|A0A8C2MCS6-1|A0A8C2MCS6_CRIGR Isoform 1 of Protein transport protein Sec61 subunit alpha isoform X1 OS=Cricetulus griseus OX=10029 GN=Sec61a2 PE=3 SV=1 CANONICAL=A0A8C2MCS6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLY9/entry", "sequence": { "sequence": "MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRKIMRPSNEVPGGSALKAVEQISTMVTMRNR", "length": 445, "header": "tr|A0A9J7FLY9-1|A0A9J7FLY9_CRIGR Computationally mapped isoform of Protein transport protein Sec61 subunit alpha isoform X2 OS=Cricetulus griseus OX=10029 GN=Sec61a2 PE=3 SV=1 CANONICAL=A0A8C2MCS6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771837", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771837", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P61621-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 1", "gene_name": "Sec61a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF", "length": 476 }, "evidence": [ { "id": "A0A8C2MCS6", "url": "https://omabrowser.org/oma/group/A0A8C2MCS6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KHX4-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 476 }, "evidence": [ { "id": "A0A8C2MCS6", "url": "https://omabrowser.org/oma/group/A0A8C2MCS6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9H9S3-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 476 }, "evidence": [ { "id": "A0A8C2MCS6", "url": "https://omabrowser.org/oma/group/A0A8C2MCS6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JLR1-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "Sec61a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 476 }, "evidence": [ { "id": "A0A8C2MCS6", "url": "https://omabrowser.org/oma/group/A0A8C2MCS6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCS6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MCS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCS6" }, { "id": "PF10559", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10559" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Translocon Sec61/SecY plug", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 74, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MCU0-1", "uniprot_ac": "A0A8C2MCU0", "uniprot_id": "A0A8C2MCU0_CRIGR", "mass": { "chemical_mass": 20082.0, "monoisotopic_mass": 20082.0 }, "refseq": { "ac": "XP_027279401", "name": "MORN repeat-containing protein 5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279401" }, "gene_names": [ { "name": "Morn5", "type": "recommended", "evidence": [ { "id": "A0A8C2MCU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCU0" } ] }, { "name": "Morn5", "type": "synonym", "evidence": [ { "id": "XP_027279401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279401" } ] } ], "protein_names": [ { "name": "MORN repeat-containing protein 5", "type": "recommended", "evidence": [ { "id": "A0A8C2MCU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCU0/entry#names_and_taxonomy" } ] }, { "name": "MORN repeat-containing protein 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027279401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279401" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279401", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279401" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCU0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCU0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Morn5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCU0", "locus": {} } ], "crossref": [ { "id": "100771149", "url": "https://www.ncbi.nlm.nih.gov/gene/100771149", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771149", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771149", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MCU0", "url": "https://www.orthodb.org/?gene=A0A8C2MCU0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JMP5", "url": "https://www.orthodb.org/?gene=A0A9J7JMP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JWG4", "url": "https://www.orthodb.org/?gene=A0A9J7JWG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46437:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46437:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02493", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02493", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279401", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279401", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCU0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQYTGSKYVGSYVNRRMEGSAEYILPTDTRYVGNMKDGMFHGEGTLFFPSGSRFDATWEKGLAVKGKYTFADGLQYEDKHWHYCDSYDRRFYTEICYGLKPSGISRLTNMDPPRKIPPGCYDCGDGFYNPTTRVIKDYLNRFLRNADDDEHEWIVRTCRKGWEEKPAQKPKL", "length": 172, "header": "tr|A0A8C2MCU0-1|A0A8C2MCU0_CRIGR Isoform 1 of MORN repeat-containing protein 5 OS=Cricetulus griseus OX=10029 GN=Morn5 PE=4 SV=1 CANONICAL=A0A8C2MCU0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCU0/entry", "sequence": { "sequence": "MQYTGSKYVGSYVNRRMEGSAEYILPTDTRYVGNMKDGMFHGEGTLFFPSGSRFDATWEKGLAVKGKYTFADGLQYEDKHWHYCDSYDRRFYTEICYGLKPSGISRLTNMDPPRKIPPGCYDCGDGFYNPTTRVIKDYLNRFLRNADDDEHEWIVRTCRKGWEEKPAQKPKL", "length": 172, "header": "tr|A0A8C2MCU0-1|A0A8C2MCU0_CRIGR Isoform 1 of MORN repeat-containing protein 5 OS=Cricetulus griseus OX=10029 GN=Morn5 PE=4 SV=1 CANONICAL=A0A8C2MCU0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMP5/entry", "sequence": { "sequence": "MQYTGSKYVGSYVNRRMEGSAEYILPTDTRYVGNMKDGMFHGEGTLFFPSGSRFDATWEKGLAVKGKYTFADGLQYEDKHWHYCDSYDRRFYTEICYGLKPSGISRLTNMDPPRKIPPGCYDCGDGFYNPTTRVIKDYLNRFLRNAGLPGFFFFC", "length": 155, "header": "tr|A0A9J7JMP5-1|A0A9J7JMP5_CRIGR Computationally mapped isoform of MORN repeat-containing protein 5 OS=Cricetulus griseus OX=10029 GN=Morn5 PE=4 SV=1 CANONICAL=A0A8C2MCU0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWG4/entry", "sequence": { "sequence": "MQYTGSKYVGSYVNRRMEGSAEYILPTDTRYVGNMKDGMFHGEGTLFFPSGSRFDATWEKGLAVKASLGSPIWTHREKSPQAAMTVEMASITPPPGSSRII", "length": 101, "header": "tr|A0A9J7JWG4-1|A0A9J7JWG4_CRIGR Computationally mapped isoform of MORN repeat-containing protein 5 OS=Cricetulus griseus OX=10029 GN=Morn5 PE=4 SV=1 CANONICAL=A0A8C2MCU0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A8C2MCU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MCV4-1", "uniprot_ac": "A0A8C2MCV4", "uniprot_id": "A0A8C2MCV4_CRIGR", "mass": { "chemical_mass": 44754.0, "monoisotopic_mass": 44754.0 }, "refseq": { "ac": "XP_027286036", "name": "plasminogen activator inhibitor 1 RNA-binding protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286036" }, "gene_names": [ { "name": "Serbp1", "type": "recommended", "evidence": [ { "id": "A0A8C2MCV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4" } ] }, { "name": "Serbp1", "type": "synonym", "evidence": [ { "id": "XP_027286036", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286036" } ] } ], "protein_names": [ { "name": "Plasminogen activator inhibitor 1 RNA-binding protein isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MCV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4/entry#names_and_taxonomy" } ] }, { "name": "plasminogen activator inhibitor 1 RNA-binding protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286036", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286036" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286036", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286036" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Serbp1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4", "locus": {} } ], "crossref": [ { "id": "100758887", "url": "https://www.ncbi.nlm.nih.gov/gene/100758887", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032381", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032381", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039764", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039764", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758887", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758887", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MCV4", "url": "https://www.orthodb.org/?gene=A0A8C2MCV4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12299", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12299", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12299:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12299:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04774", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04774", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286036", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286036", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJG6", "url": 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"tr|A0A8C2MCV4-1|A0A8C2MCV4_CRIGR Isoform 1 of Plasminogen activator inhibitor 1 RNA-binding protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Serbp1 PE=3 SV=1 CANONICAL=A0A8C2MCV4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4/entry", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA", "length": 407, "header": "tr|A0A8C2MCV4-1|A0A8C2MCV4_CRIGR Isoform 1 of Plasminogen activator inhibitor 1 RNA-binding protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Serbp1 PE=3 SV=1 CANONICAL=A0A8C2MCV4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJE8/entry", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA", "length": 386, "header": "tr|A0A9J7GJE8-1|A0A9J7GJE8_CRIGR Computationally mapped isoform of Plasminogen activator inhibitor 1 RNA-binding protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Serbp1 PE=3 SV=1 CANONICAL=A0A8C2MCV4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJG6/entry", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA", "length": 392, "header": "tr|A0A9J7GJG6-1|A0A9J7GJG6_CRIGR Computationally mapped isoform of Plasminogen activator inhibitor 1 RNA-binding protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Serbp1 PE=3 SV=1 CANONICAL=A0A8C2MCV4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K120-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K120/entry", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA", "length": 401, "header": "tr|A0A9J7K120-1|A0A9J7K120_CRIGR Computationally mapped isoform of Plasminogen activator inhibitor 1 RNA-binding protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Serbp1 PE=3 SV=1 CANONICAL=A0A8C2MCV4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCV4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614552.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647362", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647362" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MD24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plekhg4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13242", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13242", "database": "CDD", 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"categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27632", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27632", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647362", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647362", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MD24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MD24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGPLEGADVSPDSQDPDADRRFAVCSFRNTHKEKKPAHQIQAMDPRPSTLAVGATQGDSLSKKPESLPEQRAANGAGDCQGSLLGGPPVQSEEPPFSEVESLLYPMSSHLSLTQSDNQGGGLIGDPGPGKARPAGVSPLSEMSSKLLEADPSGSSFQPADCLLAQDITWELLASGMASLPGTRDVEGRAVLLLCAHSPAWLHPKCNSYELLNLLFYLRGIPRSEVQALGLTILVDARICSPSSSLIWGLSQLQEAAPGSVQQLLLVGKMPEEMPTGLQFKQLSSHQSLLAHIPDVALPTSLGGCLPYSHQAWLDFRMRLETLQQNCQETCALIQGVIDSMKAMQQPMESGEVGQLLQQVQSLMQQVLDSPQLSWLQSQGSLELAWLKQGMPEVTLSPDNRSAVDKADELYGQVDGLLHQLTLQSNHRVQALELLQTLEAQEDGLRQIEVWLQEVGWPGLEEPEEPSLDLLLQAQGPFQELDQVAQEQIKQGEKLLQPLVGWEAAELGPLGKHFLTLRSQLTEFSRALAQRRQRLADAEKLFQFFKQATTWTEEGQRVLTELEQELPGVVLQRLQLHWTRHPDLPPAHFRKMWALATGLRSEGIRQECRWAWAQCQDTWLALDQKLEAALKPPTNSTATLCVRRAPATPTIPPLRKAYSFDRNLGQRLSDAAHHGHFAAAVTDSYRPETGGVRPRSSPSVPLSGSSDFRNPNRLQLVLAEMVATEHEYVRALDYTMQNYFPELDRPDVPQGLRGQRAHLFGNLEKLRDFHYHFFLRELEACTRHPPRVAYAFLRHRVQFGMYALYSKNKPRSDALMSSYGHTFFKEKQQALGDHLDLASYLLKPIQRMSKYALLLQELARACGGPAQELGALQAAQSLVHFQLRHGNDLLAMDAIQGCDVNLKEQGQLVRQDEFTVRTGRHKCCRRVFLFEELLLFSKPRRGPAGVDIFTYKRSFKMADLGLTECCGESKLRFEIWFRRRKARDLFVLQASNVATKQAWTADISRLLWRQAVHNKEVRMAEMASMGVGNKAFWDIAPSEQAINDRSINYVLKRRDVRSRASIAVAPFDYDNPYLGALGSLPGDRASCSVLGSLNLHLYRDPALMGVHWSLYPPNFPEEAALEAEAEMGSQSLTPEDSEVSSQCPSASGSSGSDSSCVSGQTLGRGLEDLSCV", "length": 1172, "header": "tr|A0A8C2MD24-1|A0A8C2MD24_CRIGR Isoform 1 of Puratrophin-1 OS=Cricetulus griseus OX=10029 GN=Plekhg4 PE=4 SV=1 CANONICAL=A0A8C2MD24-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MD24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24/entry", "sequence": { "sequence": 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"length": 1172, "header": "tr|A0A8C2MD24-1|A0A8C2MD24_CRIGR Isoform 1 of Puratrophin-1 OS=Cricetulus griseus OX=10029 GN=Plekhg4 PE=4 SV=1 CANONICAL=A0A8C2MD24-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MD24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MD24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766436", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766436", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LL84-1", "protein_name": "Pleckstrin homology and RhoGEF domain containing G4", "gene_name": "Plekhg4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEERKMRCKEKKVPGAPHNSFRNTGKEEEPAHQIQAMDPRLSRPAVGATQGIGLQGDFLSKKPQSLPDQSAADRSGGNQRSILGAPQAQSEEPAFSEMENCLCPGSSHLNLTQGENDHRGGGLIGDPEPGRALPAGFSPLLEMSSKLPEADPSGSSFPRPADCLLARDLTWELLASGMAALPGTRDIEGRAVLLLCAHSPAWLHPKCNSHELLSLLFYLRGIPRPEVQALGLTVLVDARICPPSSALTWGLSQLQEASPGSVQQLLLVGKMPEDMPVGLQAKQLASHQSLLTHIPNMELPTSLGGCLSYCHQAWLDFRMRLETLQQSCQVACALLQGVIDSMKAMRQPLESGEVGELLQQAQSLMQQVLESPQLSWLQSQGSLELAWLKQGMPQVALSPDYRSAVDKADELYGQVDELLHRLTLKSNQRIRALELLQALEAQEGVLCQIEVWLQEVGWPGLEEPGEPSLDMLLQAQGPFQELDLVAQEQVKQGEKLLQPLVGWEAAELGPTGKRFLALRSQLMEFSRALAQRRQRLADAEKLFQFFKQASTWTEEGQRVLTELEQETPEVVLQRLQLHWSKHPDLPPAHFRKMWALATGLGSEGIRQECRWAWAQCQDTWLALDQKREAALKPQSMNSTATLYVRRAPAIPTIPPLRKSYSFDQNLGKHLGDASNRGHCAATVTDCHRPEARGGIRPRSSPSVPLSGSSDFRSPNRLQLVLAEMVATEREYVRALDYTIQNYFPELDRSDVPQGLRGQRAHLFGNLEKLRDFHFHFFLRELEACTRHPPRVAHAFLRHRVQFGMYALYSKNKPRSDALMSNYGHTFFKEKQQALGDHLDLASYLLKPIQRMSKYALLLQELARACGGPAQELGALQAAQSLVHFQLRHGNDLLAMDAIQGCDVNLKEQGQLVRQDEFTVRAGHHKSCRRVFLFEELLLFSKPRRGPAGVDIFTYKRSFKMADLGLTECCGESKLRFEIWFRRRKARDLFVLQASDVATKQAWTADISRLLWRQAVHNKEVRMAEMASMGVGNKAFWDIAPSEEAINDRNINYVLKRRDVRSRASIAVAPFDYDNPYLGALASLPGDRASCSVLGSLNLHLYRDPALLGVHWSLLPPNFPEEASLDTEVDLGSQPSLTPEDSEVSSQCPSASGSSGSDSSCVSGQTMGRGLEDLSCV", "length": 1176 }, "evidence": [ { "id": "A0A8C2MD24", "url": "https://omabrowser.org/oma/group/A0A8C2MD24/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPS6-1", "protein_name": "Pleckstrin homology domain containing, family G (with RhoGef domain) member 4", "gene_name": "Plekhg4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGPLECGDVSPDSQGHVADGKRFAVCSFRNTRKEEEPAHEIQAMDPRPSRPAAGATQGVGLQGDFLAKEPQSLPEQRAEDGPRGYQRSIIGAPPTQSEEPAFSELENLLCSGSSHLNLTQGDNDYRGEGLIGDPGPGRTLPAGCSPLSETSPKLLEADPSGSSFPKPADCLLARDLAWELLASGMAALPGTRDVEGRAVLLLCAHSPAWLHPKSNSHELLSLLFYLRGIPRPEVQALGLTVLVDARVCSPSSSLTWGLSRLQEASPGSVQQVLLIGKMPEDVPVGLQWKQLRSHQSLLTHIPNVELPTSLGGSLSYCHQGWLDFRMRLEALQQSCQVACALLQGVIDSMKALRPPMESGEVAQLLQQTQSLMQQVLDSPQLSWLQSQGSQELAWLKQGTPRVTLSPDYRSAVDKADALYGQVDELLHQLALKSNQRIRALELLQALEAQEGVLRQIEVWLQEVGWPGVEEPGEPSLDTLLQAQGPFQELDLVAQEQVTQGEKLLQPLVGLEAAELGSPGKRFLALRSQLTEFSRALAQRRQRLADAEKLFQFFKQASTWTEEGRRLLTELEQERPEVVLQRLQLHWTRHPDLPPAHFRKMWALATGLGSEGIRQECRCAWAQCQDTWLALDQKREAALKPMPATNNTATLYVRRAPAVPTVPPLRKAYSFDRNLGRHLQDVSSRGHCAAIVTDCHRPEARGGVRPRSSPPVPLSGSSDFRSPNRLQLVLAEMVATEREYVRALDYTIQNYFPELDRPDVPQGLRGQRAHLFGNLEKLRDFHYNFFLRELEACTRHPPRVAHAFLRHRVQFGMYALYSKNKPRSDALMTNYGHTFFKEKQQALGDHLDLASYLLKPIQHMSKYALLLQELARACGGPAQELGALQAAQSLVHFQLRHGNDLLAMDAIQGCDVNLKEQGQLVRQDEFTVRAGRHKACRRVFLFEELLLFSKPRRGPAGVDIFTYKRSFKMADLGLTECCGESQLRFEIWFRRRKARDLFVLQASDVATKQAWTADISRLLWRQAVHNKEVRMAEMASMGVGSKAFWDIAPSEEAINDRNINYVLKRRDVRSRASIAVAPFDCDNPYLGALGSLPGDRASGSVLGSLNLHLYRDPALMGGHWSLYPPNFSEEASLDLGSQPSLTPEDSEVSSQCPSASGSSDSDSSCVSGQTMGRGLEDLSCV", "length": 1181 }, "evidence": [ { "id": "A0A8C2MD24", "url": "https://omabrowser.org/oma/group/A0A8C2MD24/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q58EX7-1", "protein_name": "Puratrophin-1", "gene_name": "PLEKHG4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERPLENGDESPDSQGHATDWRFAVCSFRDAWEEEEPASQMHVKDPGPPRPPAGATQDEELQGSPLSRKFQLPPAADESGDAQRGTVESSSVLSEGPGPSGVESLLCPMSSHLSLAQGESDTPGVGLVGDPGPSRAMPSGLSPGALDSDPVGLGDPLSEISKLLEAAPSGSGLPKPADCLLAQDLCWELLASGMATLPGTRDVQGRAVLLLCAHSPAWLQSECSSQELIRLLLYLRSIPRPEVQALGLTVLVDARICAPSSSLFSGLSQLQEAAPGAVYQVLLVGSTLLKEVPSGLQLEQLPSQSLLTHIPTAGLPTSLGGGLPYCHQAWLDFRRRLEALLQNCQAACALLQGAIESVKAVPQPMEPGEVGQLLQQTEVLMQQVLDSPWLAWLQCQGGRELTWLKQEVPEVTLSPDYRTAMDKADELYDRVDGLLHQLTLQSNQRIQALELVQTLEARESGLHQIEVWLQQVGWPALEEAGEPSLDMLLQAQGSFQELYQVAQEQVRQGEKFLQPLTGWEAAELDPPGARFLALRAQLTEFSRALAQRCQRLADAERLFQLFREALTWAEEGQRVLAELEQERPGVVLQQLQLHWTRHPDLPPAHFRKMWALATGLGSEAIRQECRWAWARCQDTWLALDQKLEASLKLPPVGSTASLCVSQVPAAPAHPPLRKAYSFDRNLGQSLSEPACHCHHAATIAACRRPEAGGGALPQASPTVPPPGSSDPRSLNRLQLVLAEMVATEREYVRALEYTMENYFPELDRPDVPQGLRGQRAHLFGNLEKLRDFHCHFFLRELEACTRHPPRVAYAFLRHRVQFGMYALYSKNKPRSDALMSSYGHTFFKDKQQALGDHLDLASYLLKPIQRMGKYALLLQELARACGGPTQELSALREAQSLVHFQLRHGNDLLAMDAIQGCDVNLKEQGQLVRQDEFVVRTGRHKSVRRIFLFEELLLFSKPRHGPTGVDTFAYKRSFKMADLGLTECCGNSNLRFEIWFRRRKARDTFVLQASSLAIKQAWTADISHLLWRQAVHNKEVRMAEMVSMGVGNKAFRDIAPSEEAINDRTVNYVLKCREVRSRASIAVAPFDHDSLYLGASNSLPGDPASCSVLGSLNLHLYRDPALLGLRCPLYPSFPEEAALEAEAELGGQPSLTAEDSEISSQCPSASGSSGSDSSCVSGQALGRGLEDLPCV", "length": 1191 }, "evidence": [ { "id": "A0A8C2MD24", "url": "https://omabrowser.org/oma/group/A0A8C2MD24/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MD24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 635, "end_pos": 637, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MD24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 713, "end_pos": 889, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MD24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MD24" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 901, "end_pos": 1008, "start_aa": "Asn", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 400, "end_pos": 402 }, { "start_pos": 635, "end_pos": 637 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MDN0-1", "uniprot_ac": "A0A8C2MDN0", "uniprot_id": "A0A8C2MDN0_CRIGR", "mass": { "chemical_mass": 65450.0, "monoisotopic_mass": 65450.0 }, "refseq": { "ac": "XP_027261225", "name": "poly(A) RNA polymerase, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261225" }, "gene_names": [ { "name": "LOC100759832", "type": "recommended", "evidence": [ { "id": "A0A8C2MDN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDN0" } ] }, { "name": "LOC100759832", "type": "synonym", "evidence": [ { "id": "XP_027261225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261225" } ] } ], "protein_names": [ { "name": "Poly(A) RNA polymerase, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MDN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDN0/entry#names_and_taxonomy" } ] }, { "name": "poly(A) RNA polymerase, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027261225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261225" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027261225", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261225" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDN0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDN0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759832", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDN0", "locus": {} } ], "crossref": [ { "id": "cd05402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759832", "url": "https://www.ncbi.nlm.nih.gov/gene/100759832", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759832", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759832", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MDN0", "url": "https://www.orthodb.org/?gene=A0A8C2MDN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12271:SF133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12271:SF133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03828", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03828", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17797", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17797", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027261225", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027261225", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MDN0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MDN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARGVGLLTRLPLHSQRRSRVQRSISRHLCCPGTVAANVGSEEQPLGGAETGSEDKIPKKRFSEVQEERREQAQRTVLIRCPNNVNEKKFLKYLSQHGPINNHFFYESFGLHAVVEFCQKDSVDSLQNGTHTPKQRTDPVIPFKSRFLNLKLKNSSNQIPQQSYAQTNKQLPPSSKKLFELLNYAENIDDQLNTLLKAFQLTEENVRLRHLTCSLIEDIAAAYFPGCVIWPFGSSVNTFGKLGCDLDMFLDLDEIGKLDVHKNAGDFLMEFQMKTVPSERIATQKILSVIGECIDNFGPSCVGVQKILNARCPLLRFSHQASGFQCDLTVNNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAHSLTSSIPGTWITNFSLTVMVIFFLQRRSPPILPTLDSLKSLADAEDRCILNGHNCTFVRDLYKIKPSGNTETLELLLKEFFEYFGNFAFNKNSINIRQGKEQNKPDSSPLYIQNPFETSLNISKNVSQSQLQKFVDLARDSAWILEQEDKSQPSLSSKQPWGLATLLLPPGAVSTPLSKKKKKPMNEKVKGLLASIKSSTTDSSKGTHGKRAISTQV", "length": 584, "header": "tr|A0A8C2MDN0-1|A0A8C2MDN0_CRIGR Isoform 1 of Poly(A) RNA polymerase, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100759832 PE=4 SV=1 CANONICAL=A0A8C2MDN0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MDN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDN0/entry", "sequence": { "sequence": "MAARGVGLLTRLPLHSQRRSRVQRSISRHLCCPGTVAANVGSEEQPLGGAETGSEDKIPKKRFSEVQEERREQAQRTVLIRCPNNVNEKKFLKYLSQHGPINNHFFYESFGLHAVVEFCQKDSVDSLQNGTHTPKQRTDPVIPFKSRFLNLKLKNSSNQIPQQSYAQTNKQLPPSSKKLFELLNYAENIDDQLNTLLKAFQLTEENVRLRHLTCSLIEDIAAAYFPGCVIWPFGSSVNTFGKLGCDLDMFLDLDEIGKLDVHKNAGDFLMEFQMKTVPSERIATQKILSVIGECIDNFGPSCVGVQKILNARCPLLRFSHQASGFQCDLTVNNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAHSLTSSIPGTWITNFSLTVMVIFFLQRRSPPILPTLDSLKSLADAEDRCILNGHNCTFVRDLYKIKPSGNTETLELLLKEFFEYFGNFAFNKNSINIRQGKEQNKPDSSPLYIQNPFETSLNISKNVSQSQLQKFVDLARDSAWILEQEDKSQPSLSSKQPWGLATLLLPPGAVSTPLSKKKKKPMNEKVKGLLASIKSSTTDSSKGTHGKRAISTQV", "length": 584, "header": "tr|A0A8C2MDN0-1|A0A8C2MDN0_CRIGR Isoform 1 of Poly(A) RNA polymerase, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100759832 PE=4 SV=1 CANONICAL=A0A8C2MDN0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJQ0/entry", "sequence": { "sequence": "MFLDLDEIGKLDVHKNAGDFLMEFQMKTVPSERIATQKILSVIGECIDNFGPSCVGVQKILNARCPLLRFSHQASGFQCDLTVNNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAHSLTSSIPGTWITNFSLTVMVIFFLQRRSPPILPTLDSLKSLADAEDRCILNGHNCTFVRDLYKIKPSGNTETLELLLKEFFEYFGNFAFNKNSINIRQGKEQNKPDSSPLYIQNPFETSLNISKNVSQSQLQKFVDLARDSAWILEQEDKSQPSLSSKQPWGLATLLLPPGAVSTPLSKKKKKPMNEKVKGLLASIKSSTTDSSKGTHGKRAISTQV", "length": 336, "header": "tr|A0A9J7FJQ0-1|A0A9J7FJQ0_CRIGR Computationally mapped isoform of Poly(A) RNA polymerase, mitochondrial isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100759832 PE=4 SV=1 CANONICAL=A0A8C2MDN0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GUH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUH3/entry", "sequence": { "sequence": 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8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260133", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260133" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem241", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDP3", "locus": {} } ], "crossref": [ { "id": "100756753", "url": "https://www.ncbi.nlm.nih.gov/gene/100756753", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR050186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756753", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756753", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MDP3", "url": "https://www.orthodb.org/?gene=A0A8C2MDP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11132", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11132", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027260133", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260133", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MDP3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MDP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNGRRSLLGLTFCTCYLASHLTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSLRSNVLAWLPASVLFVGIIYAGSRALSRLAVPVFFILHNVAEVLICGYQKCVRKEKTSPTKICSALFLVAAAGCLPFQDAQFDPDGYFWAVVHLFCVGAYKILRKSQKPSVLSDIDQQYLNYIFSVALLAFASHPTGDLFSVLDFPFLYFYRFHGSCCASGALGFFLMLSRVKLKSILAPGQCAAWIFFAKVMTAGLSLLLFDVILTRATVGCFLLGGLGEALLVFSERKSS", "length": 296, "header": "tr|A0A8C2MDP3-1|A0A8C2MDP3_CRIGR Isoform 1 of Transmembrane protein 241 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem241 PE=4 SV=1 CANONICAL=A0A8C2MDP3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MDP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDP3/entry", "sequence": { "sequence": "MNGRRSLLGLTFCTCYLASHLTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSLRSNVLAWLPASVLFVGIIYAGSRALSRLAVPVFFILHNVAEVLICGYQKCVRKEKTSPTKICSALFLVAAAGCLPFQDAQFDPDGYFWAVVHLFCVGAYKILRKSQKPSVLSDIDQQYLNYIFSVALLAFASHPTGDLFSVLDFPFLYFYRFHGSCCASGALGFFLMLSRVKLKSILAPGQCAAWIFFAKVMTAGLSLLLFDVILTRATVGCFLLGGLGEALLVFSERKSS", "length": 296, "header": "tr|A0A8C2MDP3-1|A0A8C2MDP3_CRIGR Isoform 1 of Transmembrane protein 241 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem241 PE=4 SV=1 CANONICAL=A0A8C2MDP3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259154" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDT5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDT5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ubap2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDT5", "locus": {} } ], "crossref": [ { "id": "cd14277", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14277", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769902", "url": "https://www.ncbi.nlm.nih.gov/gene/100769902", "database": "GeneID", "categories": [ "Genome 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"length": 1125, "header": "tr|A0A8C2MDT5-1|A0A8C2MDT5_CRIGR Isoform 1 of Ubiquitin-associated protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ubap2 PE=4 SV=1 CANONICAL=A0A8C2MDT5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FH92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH92/entry", "sequence": { "sequence": "MRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDESIVALHDCNGDVNKAINVLLEGDSDTTSWETVGGKKKNFGKESSENKENREKRTEREASRGRGSSNRKGRGGNRGREFKGEENGIDSNQGDKPSERGKRGRGRGFGRGRGRGAGRFSAQSMGTFNPADYSESASTDINGTKSGVWEAAQNGTDEGTEGMGKPHSISQELPNKRSYGLKGAWKNSVEEWTTEDWTEDLSETKVFTASSVPAENHITPGQSIDLVALLQKPVPPTQAAEANSFETSQQQGFGQALVFTNSQHSNQTAQGSGSSTSANSYSPQRLSSVLGSGFGELAPSKMVNISSSQILDKLKAPSLNSFAATSTAPQSSTSPPATTASWDLKPSASQSSVLNHFDFKSQPEPSPVLSQLSQRQQHQTPAVSVPPPGLESFASQAKHRESTPGDGPSVNRLLQLPNMAVENIVSAHQPQPKHMKLPKRRIPPASKVPASAVEMPGSADVTGLNVQFGALEFGSEPSLSDFGSTTSASEKNNQMPISLYPKSLSDPLNASLPMTSAVQNSTYTTSVITSSSLTSSSLSSTSPVTTSSSYDQSSVHTRIAYQSSANPPDSAPGSVANGHGGGRSQHTVDTTSSVPAPKTTDPPALPSVGSLPNTTSCTALLPSSSQHTATLPSLSQSGDLSSNALSQLSSSLSSHQNSLSSPHTARPTSTPHTHASVESTPSSATFSTAATSAPSAPSTGVVLPGSSLCLGGTTVSVPSNSTRATALVTSGKAPPNLPQGVPPLLHNQYLVGPGGLLPAYPIYGYDELQMLQSRLPMDYYGIPFAAPTALASRDGSLANNPYSGDITKFGRGDSASPAPPTTPAQAQQSQSQTHHTAQQPFLNPALPPGYSYTGLPYYTGVPSAFQYGPTMFVPPTSAKQHGVTLNTPPTPFQQASGYGQHTYSTGYDDLTQGTAAGDYTKGGYGGSSQAPNKSAGSGPGKGVSVSSGTTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSALGSTGPLAPGAAPGYAPAPFLHLMPAHQQPHAQLLHHHLPQDSPSGSAQRNQPSSLQPKTQASKPTYGNSPYWTN", "length": 1087, "header": "tr|A0A9J7FH92-1|A0A9J7FH92_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ubap2 PE=4 SV=1 CANONICAL=A0A8C2MDT5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 303, "start_aa": "Thr", "end_pos": 303, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr303", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 746, "start_aa": "Thr", "end_pos": 746, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr746", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDT5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDT5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDT5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDT5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769902", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769902", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDT5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDT5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDT5", "url": 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Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613673.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003498031", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498031" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDV1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDV1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdfy2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDV1", "locus": {} } ], "crossref": [ { "id": "cd15718", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15718", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758431", "url": "https://www.ncbi.nlm.nih.gov/gene/100758431", "database": "GeneID", "categories": [ "Genome 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"MAAEIQPQPLTRKPILLQRVEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYWPSIFHAMPSPCSCMSFNPETRRLSIGLDNGTISEFILSEDYNKMTPVKNYQAHQSRVTMVLFVLELEWVLSTGQDKLFAWHCSESGQRLGCYRTSAVASGLQFDVETRHVFIGDHSGQVTILKLEQENCTLLTSFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQGHNDKVRALSYAQHTRQLISCGGDGGIVVWNMDVERQEHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTATFHDSKHNIVHVHFDATRGWLLTSGTDKVIKLWDMTPIVS", "length": 366, "header": "tr|A0A9J7HA20-1|A0A9J7HA20_CRIGR Computationally mapped isoform of WD repeat and FYVE domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdfy2 PE=4 SV=1 CANONICAL=A0A8C2MDV1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDV1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDV1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MDV1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MDV1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758431", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758431", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A0J0-1", "protein_name": "WD repeat and FYVE domain containing 2", "gene_name": "Wdfy2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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] }, { "id": "IPR059250", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059250", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759923", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759923", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LMTMTHE", "url": "https://omabrowser.org/oma/group/LMTMTHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MDV2", "url": "https://www.orthodb.org/?gene=A0A8C2MDV2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20948", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20948", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20948:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20948:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14808", "url": 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164 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem164 PE=4 SV=1 CANONICAL=A0A8C2MDV2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D3/entry", "sequence": { "sequence": "MHMLNGALLALLFPVVNTRLLPFELEIYYIQHVMLYVVPIYLLWKGGAYTPEPLSSFRWALLSTGLMFFYHFSVLQILGLVTEVNLNNMLCPAISDPFYGPWYRIWASGHQTLMTMTHGKLVILFSYMAGPLCKYLLDLLRLPAKKID", "length": 148, "header": "tr|A0A9J7H6D3-1|A0A9J7H6D3_CRIGR Computationally mapped isoform of Transmembrane protein 164 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem164 PE=4 SV=1 CANONICAL=A0A8C2MDV2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, 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This record is derived from a genomic sequence (NW_003613697.1) and transcript sequence (IACG01086660.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007628432.1. 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This record is derived from a genomic sequence (NW_003614903.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510599" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MEL4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEL4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Magohb", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEL4", "locus": {} } ], "crossref": [ { "id": "cd11295", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11295", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772672", "url": "https://www.ncbi.nlm.nih.gov/gene/100772672", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772672", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772672", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NQTDEFY", "url": "https://omabrowser.org/oma/group/NQTDEFY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MEL4", "url": "https://www.orthodb.org/?gene=A0A8C2MEL4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JXE9", "url": "https://www.orthodb.org/?gene=A0A9J7JXE9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12638", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12638", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12638:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12638:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02792", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02792", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003510599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510599", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MEL4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MEL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI", "length": 148, "header": "tr|A0A8C2MEL4-1|A0A8C2MEL4_CRIGR Isoform 1 of Protein mago nashi homolog 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Magohb PE=3 SV=1 CANONICAL=A0A8C2MEL4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MEL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEL4/entry", "sequence": { "sequence": "MSMASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI", "length": 148, "header": "tr|A0A8C2MEL4-1|A0A8C2MEL4_CRIGR Isoform 1 of Protein mago nashi homolog 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Magohb PE=3 SV=1 CANONICAL=A0A8C2MEL4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXE9/entry", "sequence": { "sequence": "MIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI", "length": 102, "header": "tr|A0A9J7JXE9-1|A0A9J7JXE9_CRIGR Computationally mapped isoform of Protein mago nashi homolog 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Magohb PE=3 SV=1 CANONICAL=A0A8C2MEL4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MEQ7-1", "uniprot_ac": "A0A8C2MEQ7", "uniprot_id": "A0A8C2MEQ7_CRIGR", "mass": { "chemical_mass": 25355.0, "monoisotopic_mass": 25355.0 }, "refseq": { "ac": "XP_027282517", "name": "protein LIAT1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282517" }, "gene_names": [ { "name": "CUNH17orf97", "type": "recommended", "evidence": [ { "id": "A0A8C2MEQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEQ7" } ] }, { "name": "CUNH17orf97", "type": "synonym", "evidence": [ { "id": "XP_027282517", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282517" } ] } ], "protein_names": [ { "name": "Protein LIAT1", "type": "synonym", "evidence": [ { "id": "A0A8C2MEQ7", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027282517.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282517", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282517" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEQ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH17orf97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEQ7", "locus": {} } ], "crossref": [ { "id": "IPR038794", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038794", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763122", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763122", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MEQ7", "url": "https://www.orthodb.org/?gene=A0A8C2MEQ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36474", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36474", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36474:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36474:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27950", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27950", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282517", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282517", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MEQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGRGGTGAAEYGGEGEEEEEEEAAREGGAEGSPGSKLPPIVGTSSELAKRKVKKKKKKKKTKGSGKGDADKHHSRGRKSQPLSSSFHDILNPHKDHGSRVEPRDKEEGRHSLPYSCGMSQPYFAEIDESLSNQINESLRWDGILTDPEAEKERIRIYKLNRRKRYRLVALKGFHSDLCTEESVENLPYLSDKDCGPSSKQPISKGDHAHSYFEATKLLHPELVTSATE", "length": 229, "header": "tr|A0A8C2MEQ7-1|A0A8C2MEQ7_CRIGR Isoform 1 of Protein LIAT1 OS=Cricetulus griseus OX=10029 GN=CUNH17orf97 PE=4 SV=1 CANONICAL=A0A8C2MEQ7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MEQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEQ7/entry", "sequence": { "sequence": "MAGRGGTGAAEYGGEGEEEEEEEAAREGGAEGSPGSKLPPIVGTSSELAKRKVKKKKKKKKTKGSGKGDADKHHSRGRKSQPLSSSFHDILNPHKDHGSRVEPRDKEEGRHSLPYSCGMSQPYFAEIDESLSNQINESLRWDGILTDPEAEKERIRIYKLNRRKRYRLVALKGFHSDLCTEESVENLPYLSDKDCGPSSKQPISKGDHAHSYFEATKLLHPELVTSATE", "length": 229, "header": "tr|A0A8C2MEQ7-1|A0A8C2MEQ7_CRIGR Isoform 1 of Protein LIAT1 OS=Cricetulus griseus OX=10029 GN=CUNH17orf97 PE=4 SV=1 CANONICAL=A0A8C2MEQ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271107", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271107" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MEY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEY9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cmtm6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEY9", "locus": {} } ], "crossref": [ { "id": "100768322", "url": "https://www.ncbi.nlm.nih.gov/gene/100768322", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768322", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768322", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MEY9", "url": "https://www.orthodb.org/?gene=A0A8C2MEY9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271107", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271107", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MEY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MEY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNGAVYSPTTEAAPGAGRGARSGLAAYFFLGRLPWSRRVLKVSQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLLLIVYCTPVHDRVDPGKVKSSDFYITLGTGCVFLLASIIFVSTHAGTSAEIAAIVFGFIASLMFLLDFVVMLCEKRQESQLRKPENNARAEALTEPLNA", "length": 183, "header": "tr|A0A8C2MEY9-1|A0A8C2MEY9_CRIGR Isoform 1 of CKLF-like MARVEL transmembrane domain-containing protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cmtm6 PE=4 SV=1 CANONICAL=A0A8C2MEY9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MEY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEY9/entry", "sequence": { "sequence": "MDNGAVYSPTTEAAPGAGRGARSGLAAYFFLGRLPWSRRVLKVSQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLLLIVYCTPVHDRVDPGKVKSSDFYITLGTGCVFLLASIIFVSTHAGTSAEIAAIVFGFIASLMFLLDFVVMLCEKRQESQLRKPENNARAEALTEPLNA", "length": 183, "header": "tr|A0A8C2MEY9-1|A0A8C2MEY9_CRIGR Isoform 1 of CKLF-like MARVEL transmembrane domain-containing protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cmtm6 PE=4 SV=1 CANONICAL=A0A8C2MEY9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271907", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271907" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MF59", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF59" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771200", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF59", "locus": {} } ], "crossref": [ { "id": "100771200", "url": "https://www.ncbi.nlm.nih.gov/gene/100771200", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004212", "database": "InterPro", "categories": [ "Protein 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1 of General transcription factor II-I repeat domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=LOC100771200 PE=4 SV=1 CANONICAL=A0A8C2MF59-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 609, "start_aa": "Thr", "end_pos": 609, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr609", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282043", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282043" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFG2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gsg1l2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG2", "locus": {} } ], "crossref": [ { "id": "103159828", "url": "https://www.ncbi.nlm.nih.gov/gene/103159828", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103159828", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159828", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MFG2", "url": "https://www.orthodb.org/?gene=A0A8C2MFG2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07803", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07803", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282043", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282043", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MFG2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MFG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRARWQRVLTLVPICLALAFSLTAMGSSHWCEGIRRMTKPLCQDLLGGLNCIHFSRTNSSTGRRHDDSQAVQYIWETGDDKFILRRFHAGLWHSCEENLNSTGERCRCFLGIVPTEGQGVLWLSIGAEVLDIFLILTGAIFLGFSVCCYHSRCNWFKVDASVAILMVLAGLLGMVAHMMYTTSFQITVNLGPEDWRPRTWDYGWSYCLAWGSFALCMTVSVVTMSRYTANHEEKPRAQKGGPYPQHNIPQSEASQKVWQTGAAPRPVGQVFMNVPGHPPPGTGGKVSMC", "length": 290, "header": "tr|A0A8C2MFG2-1|A0A8C2MFG2_CRIGR Isoform 1 of Germ cell-specific gene 1-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gsg1l2 PE=3 SV=1 CANONICAL=A0A8C2MFG2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MFG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG2/entry", "sequence": { "sequence": "MDRARWQRVLTLVPICLALAFSLTAMGSSHWCEGIRRMTKPLCQDLLGGLNCIHFSRTNSSTGRRHDDSQAVQYIWETGDDKFILRRFHAGLWHSCEENLNSTGERCRCFLGIVPTEGQGVLWLSIGAEVLDIFLILTGAIFLGFSVCCYHSRCNWFKVDASVAILMVLAGLLGMVAHMMYTTSFQITVNLGPEDWRPRTWDYGWSYCLAWGSFALCMTVSVVTMSRYTANHEEKPRAQKGGPYPQHNIPQSEASQKVWQTGAAPRPVGQVFMNVPGHPPPGTGGKVSMC", "length": 290, "header": "tr|A0A8C2MFG2-1|A0A8C2MFG2_CRIGR Isoform 1 of Germ cell-specific gene 1-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gsg1l2 PE=3 SV=1 CANONICAL=A0A8C2MFG2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 116, "start_aa": "Thr", "end_pos": 116, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr116", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 116 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 59, "end_pos": 61 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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by automated computational analysis. This record is derived from a genomic sequence (NW_003616377.1) and transcript sequence (IACG01089361.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007652523.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652523", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652523" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdr2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG9", "locus": {} } ], "crossref": [ { "id": "100765677", "url": "https://www.ncbi.nlm.nih.gov/gene/100765677", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765677", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765677", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MFG9", "url": "https://www.orthodb.org/?gene=A0A8C2MFG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19232:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19232:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652523", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652523", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MFG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MFG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLADNLVEEFEIEDEPWYDHRDLQQDLQLAAELGKTLLDRNTELEDSLQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVAESKASQQKIISLTETIECLQTNIDHLQSQVEELKSSNQGRGRQKTCDREKPAPSFSCLKELYDLRQHFVYDHVFAEKITSLQSQQSPDEEENEHLKKTVTMLQAQLSLERKKRVSVEAEYKVVLKENCELEQQLGATDAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLFVPFKEPSQSLLEEMFLAAPEAHKKPLKRSSSETMLSSMLGGDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKYEELLKKCQQEQDSLSHKAVQTSKLPARDLTGLVTQSEAGASGWEPTPVTPEPISSPTTTPPEYKALFKEIFSCIKKTKQEIDEQRTKYPSLSPYS", "length": 454, "header": "tr|A0A8C2MFG9-1|A0A8C2MFG9_CRIGR Isoform 1 of Cerebellar degeneration-related protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdr2 PE=3 SV=1 CANONICAL=A0A8C2MFG9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MFG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG9/entry", "sequence": { "sequence": "MLADNLVEEFEIEDEPWYDHRDLQQDLQLAAELGKTLLDRNTELEDSLQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVAESKASQQKIISLTETIECLQTNIDHLQSQVEELKSSNQGRGRQKTCDREKPAPSFSCLKELYDLRQHFVYDHVFAEKITSLQSQQSPDEEENEHLKKTVTMLQAQLSLERKKRVSVEAEYKVVLKENCELEQQLGATDAYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLFVPFKEPSQSLLEEMFLAAPEAHKKPLKRSSSETMLSSMLGGDIVKGHEETCIRRAKAVKQRGISLLHEVDTQYSALKVKYEELLKKCQQEQDSLSHKAVQTSKLPARDLTGLVTQSEAGASGWEPTPVTPEPISSPTTTPPEYKALFKEIFSCIKKTKQEIDEQRTKYPSLSPYS", "length": 454, "header": "tr|A0A8C2MFG9-1|A0A8C2MFG9_CRIGR Isoform 1 of Cerebellar degeneration-related protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdr2 PE=3 SV=1 CANONICAL=A0A8C2MFG9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 405, "start_aa": "Thr", "end_pos": 405, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr405", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFG9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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[], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 405 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"uniprot_canonical_ac": "A0A8C2MFI3-1", "uniprot_ac": "A0A8C2MFI3", "uniprot_id": "A0A8C2MFI3_CRIGR", "mass": { "chemical_mass": 59341.0, "monoisotopic_mass": 59341.0 }, "refseq": { "ac": "XP_027257765", "name": "LOW QUALITY PROTEIN: headcase protein homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257765" }, "gene_names": [ { "name": "Heca", "type": "recommended", "evidence": [ { "id": "A0A8C2MFI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3" } ] }, { "name": "Heca", "type": "synonym", "evidence": [ { "id": "XP_027257765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257765" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: headcase protein homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027257765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257765" }, { "id": "A0A8C2MFI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257765", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257765" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Heca", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3", "locus": {} } ], "crossref": [ { "id": "100774249", "url": "https://www.ncbi.nlm.nih.gov/gene/100774249", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054537", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054537", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774249", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774249", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MFI3", "url": "https://www.orthodb.org/?gene=A0A8C2MFI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13425", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13425", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13425:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13425:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15353", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15353", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257765", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257765", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MFI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MFI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPNPKNSKGGRKNKRANSSGDEQENGAGALAAAGATGAAAGGALAAAAAGCGTLSPGAVGTGSAAGPGGAGTGAANATIAAGAAAAGDAKNEAPCATPLICSFGRPVDLEKDDYQKVVCNNEHCPCSTWMHLQCFYEWESSILVQFNCIGRARSWNEKQCRQNMWTKKGYDLAFRFCSCRCGQGHLKKDTDWYQVKRMQDEKKKKSGSEKNTARPPGDAGEEAKKCRPLNKPQKGLNHDLPRRHSMDRQNSQEKTVSAAAYGARSPCGSPGQSPPSGYSILSPAHFSGPRSSRYLGEFLKNAIHLEPHKKAMSGGHVFRNAHFDYSSAGLSVHRAGHFDTPVQFLRRLDLSELLAHIPRHKLNTFHVRMEDDAQVGQGEDLRKFILAALSASHRNVVNCALCHRALPVFEQFPLVDGTLFLSPSRHDEIEYDVPCHLQGRLMHLYAVCVDCLEGVHKIVCIKCKSRWDGSWHQLGTMYTYDILAASPCCQARLNCKHCGKPVIDVRIGMQYFSEYSNVQQCPHCGNLDYHFVKPFSSFKVLEAY", "length": 544, "header": "tr|A0A8C2MFI3-1|A0A8C2MFI3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: headcase protein homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Heca PE=4 SV=1 CANONICAL=A0A8C2MFI3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MFI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3/entry", "sequence": { "sequence": "MPNPKNSKGGRKNKRANSSGDEQENGAGALAAAGATGAAAGGALAAAAAGCGTLSPGAVGTGSAAGPGGAGTGAANATIAAGAAAAGDAKNEAPCATPLICSFGRPVDLEKDDYQKVVCNNEHCPCSTWMHLQCFYEWESSILVQFNCIGRARSWNEKQCRQNMWTKKGYDLAFRFCSCRCGQGHLKKDTDWYQVKRMQDEKKKKSGSEKNTARPPGDAGEEAKKCRPLNKPQKGLNHDLPRRHSMDRQNSQEKTVSAAAYGARSPCGSPGQSPPSGYSILSPAHFSGPRSSRYLGEFLKNAIHLEPHKKAMSGGHVFRNAHFDYSSAGLSVHRAGHFDTPVQFLRRLDLSELLAHIPRHKLNTFHVRMEDDAQVGQGEDLRKFILAALSASHRNVVNCALCHRALPVFEQFPLVDGTLFLSPSRHDEIEYDVPCHLQGRLMHLYAVCVDCLEGVHKIVCIKCKSRWDGSWHQLGTMYTYDILAASPCCQARLNCKHCGKPVIDVRIGMQYFSEYSNVQQCPHCGNLDYHFVKPFSSFKVLEAY", "length": 544, "header": "tr|A0A8C2MFI3-1|A0A8C2MFI3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: headcase protein homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Heca PE=4 SV=1 CANONICAL=A0A8C2MFI3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFI3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFT7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837809", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837809", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFT7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MFT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFT7" }, { "id": "PF15186", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Testis-expressed protein 13 A-D N-terminal", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 149, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MFU1-1", "uniprot_ac": "A0A8C2MFU1", "uniprot_id": "A0A8C2MFU1_CRIGR", "mass": { "chemical_mass": 57658.0, "monoisotopic_mass": 57658.0 }, "refseq": { "ac": "XP_027263700", "name": "tripartite motif-containing protein 30A isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263700" }, "gene_names": [ { "name": "LOC100752691", "type": "recommended", "evidence": [ { "id": "A0A8C2MFU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFU1" } ] }, { "name": "LOC100752691", "type": "synonym", "evidence": [ { "id": "XP_027263700", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263700" } ] } ], "protein_names": [ { "name": "Tripartite motif-containing protein 30A isoform X4", "type": "synonym", "evidence": [ { "id": "A0A8C2MFU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFU1/entry#names_and_taxonomy" } ] }, { "name": "tripartite motif-containing protein 30A isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027263700", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263700" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263700", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263700" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFU1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFU1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752691", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFU1", "locus": {} } ], "crossref": [ { "id": "cd16591", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16591", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19761", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19761", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752691", "url": "https://www.ncbi.nlm.nih.gov/gene/100752691", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752691", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752691", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MFU1", "url": "https://www.orthodb.org/?gene=A0A8C2MFU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263700", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263700", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MFU1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MFU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJL1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSVLEIIKEEVTCPICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQKVNVCVQHGEKLQLFCEKDMVAICWLCERSKDHRGHQTALIEEVAHKYKEKLQAAMEMQMANKKKCDEWECDLQKERTFWETQIQSDVENVQMEFKRLRGFLDSKEKNEVQKLMQEKEDVMNSLAESQNEVMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRSQTLILTQPKMVPRKQRRNFQASDLKDMLKVFHGIMYAQRYWVHVTLPQTYNKNVVINMGKRQIQYRKDYRRHLQDYETYDLGVLGYPAIYSGKHYWEVDVSGSDAWLLGLNDGRCAQPYLHAVNEMHGFHGFKIMYNSVVKHHVTYQPKHGYWVIGMVNTSLYHGFEKCSFTPNILSLTHLPSRVGVFLDREACTLSFYDVSNHGALMYKFCELSFPDAVYPYFNPMESSEPMTVCGPPS", "length": 498, "header": "tr|A0A8C2MFU1-1|A0A8C2MFU1_CRIGR Isoform 1 of Tripartite motif-containing protein 30A isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100752691 PE=4 SV=1 CANONICAL=A0A8C2MFU1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MFU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFU1/entry", "sequence": { "sequence": "MASSVLEIIKEEVTCPICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQKVNVCVQHGEKLQLFCEKDMVAICWLCERSKDHRGHQTALIEEVAHKYKEKLQAAMEMQMANKKKCDEWECDLQKERTFWETQIQSDVENVQMEFKRLRGFLDSKEKNEVQKLMQEKEDVMNSLAESQNEVMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRSQTLILTQPKMVPRKQRRNFQASDLKDMLKVFHGIMYAQRYWVHVTLPQTYNKNVVINMGKRQIQYRKDYRRHLQDYETYDLGVLGYPAIYSGKHYWEVDVSGSDAWLLGLNDGRCAQPYLHAVNEMHGFHGFKIMYNSVVKHHVTYQPKHGYWVIGMVNTSLYHGFEKCSFTPNILSLTHLPSRVGVFLDREACTLSFYDVSNHGALMYKFCELSFPDAVYPYFNPMESSEPMTVCGPPS", "length": 498, "header": "tr|A0A8C2MFU1-1|A0A8C2MFU1_CRIGR Isoform 1 of Tripartite motif-containing protein 30A isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100752691 PE=4 SV=1 CANONICAL=A0A8C2MFU1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FMH2-1", "url": 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"MASSVLEIIKEEVTCPICLDLMVEPVSTDCGHSFCRACITLNYESIKGKEEEGICPVCGVTYLFGHLRPNRHVANIVESLLGFKSNPEEEQKVNVCVQHGEKLQLFCEKDMVAICWLCERSKDHRGHQTALIEEVAHKYKEKLQAAMEMQMANKKKCDEWECDLQKERTFWETQIQSDVENVQMEFKRLRGFLDSKEKNEVQKLMQEKEDVMNSLAESQNEVMKQREAVRDLISDVEHQLDCSTMEMLQGVNSVLTRSQTLILTQPKMVPRKQRRNFQASDLKDMLKVFHVHVTLPQTYNKNVVINMGKRQIQYRKDYRRHLQDYETYDLGVLGYPAIYSGKHYWEVDVSGSDAWLLGLNDGRCAQPYLHAVNEMHGFHGFKIMYNSVVKHHVTYQPKHGYWVIGMVNTSLYHGFEKCSFTPNILSLTHLPSRVGVFLDREACTLSFYDVSNHGALMYKFCELSFPDAVYPYFNPMESSEPMTVCGPPS", "length": 489, "header": "tr|A0A9J7JDG5-1|A0A9J7JDG5_CRIGR Computationally mapped isoform of Tripartite motif-containing protein 30A isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100752691 PE=4 SV=1 CANONICAL=A0A8C2MFU1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJL1/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003613637.1) and transcript sequence (IACG01088977.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007652618.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652618" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFX1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Alyref", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1", "locus": {} } ], "crossref": [ { "id": "cd12680", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12680", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756310", "url": "https://www.ncbi.nlm.nih.gov/gene/100756310", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051229", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051229", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756310", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MFX1", "url": "https://www.orthodb.org/?gene=A0A8C2MFX1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19965", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19965", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19965:SF82", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19965:SF82", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13865", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13865", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MFX1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MFX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGAQGGRGGAVQAAARVNRGGGPLRNRPAISRGAAAGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRRPAQSINRGGMTRNRGSGTFGGGGTRRGTRGGSRGRGRGASRNSKQQLSAEELDAQLDAYNARMDTS", "length": 255, "header": "tr|A0A8C2MFX1-1|A0A8C2MFX1_CRIGR Isoform 1 of THO complex subunit 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Alyref PE=4 SV=1 CANONICAL=A0A8C2MFX1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MFX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1/entry", "sequence": { "sequence": "MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGAQGGRGGAVQAAARVNRGGGPLRNRPAISRGAAAGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRRPAQSINRGGMTRNRGSGTFGGGGTRRGTRGGSRGRGRGASRNSKQQLSAEELDAQLDAYNARMDTS", "length": 255, "header": "tr|A0A8C2MFX1-1|A0A8C2MFX1_CRIGR Isoform 1 of THO complex subunit 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Alyref PE=4 SV=1 CANONICAL=A0A8C2MFX1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 213, "start_aa": "Thr", "end_pos": 213, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr213", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFX1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA export from nucleus", "id": "GO:0006406", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006406", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFX1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MFX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFX1" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 105, "end_pos": 182, "start_aa": "Gly", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 213 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MFY0-1", "uniprot_ac": "A0A8C2MFY0", "uniprot_id": "A0A8C2MFY0_CRIGR", "mass": { "chemical_mass": 82167.0, "monoisotopic_mass": 82167.0 }, "refseq": { "ac": "XP_003511365", "name": "uncharacterized protein KIAA1841 homolog isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511365" }, "gene_names": [ { "name": "Kiaa1841", "type": "recommended", "evidence": [ { "id": "A0A8C2MFY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0" } ] }, { "name": "Kiaa1841", "type": "synonym", "evidence": [ { "id": "XP_003511365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511365" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA1841 homolog isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2MFY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA1841 homolog isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003511365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511365" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615077.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511365", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511365" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa1841", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0", "locus": {} } ], "crossref": [ { "id": "100755497", "url": "https://www.ncbi.nlm.nih.gov/gene/100755497", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CHQAFLC", "url": "https://omabrowser.org/oma/group/CHQAFLC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MFY0", "url": "https://www.orthodb.org/?gene=A0A8C2MFY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20946", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20946", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20946:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20946:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511365", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511365", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MFY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MFY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRGYPENNNFLNNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECAKRFDELKSSGSSPVDNQYNPLMAAGEGPVESLATYIKSSLLETQGDFQENPVDEDTVLKPGRHSIASTRNCSSESENCTTRNAGEKTEESEGPNMVIHVCDEAKNLKEDFICPRDLLVSEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKENKDCEIPTLEPGNVISILISSEFLKMDSLVEQCIQYCHRNMNAIVAAPCNMNCINANLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDAEYVNPDSRNNAATLYRCCLCKKLLTRETERRIPCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSEVVVYSTTISSLSTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVILHDQGENDDLLSCPATRILDDLHKHRDVIVTPFLKDAVSDSGLGSCDEKGLEYDILLEPNTPWGPKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEVTKKQRKKEKPKKFTKQPKKQLSSPCSQKKEKAPEKSTSRDMSPFVVSVQKNKWDASRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKSKESKEFAGGIYSRLEAQVKASAPGSARQNSSDKNPRSKSRFGQGRPA", "length": 718, "header": "tr|A0A8C2MFY0-1|A0A8C2MFY0_CRIGR Isoform 1 of Uncharacterized protein KIAA1841 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Kiaa1841 PE=4 SV=1 CANONICAL=A0A8C2MFY0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MFY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0/entry", "sequence": { "sequence": "MSRGYPENNNFLNNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECAKRFDELKSSGSSPVDNQYNPLMAAGEGPVESLATYIKSSLLETQGDFQENPVDEDTVLKPGRHSIASTRNCSSESENCTTRNAGEKTEESEGPNMVIHVCDEAKNLKEDFICPRDLLVSEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKENKDCEIPTLEPGNVISILISSEFLKMDSLVEQCIQYCHRNMNAIVAAPCNMNCINANLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDAEYVNPDSRNNAATLYRCCLCKKLLTRETERRIPCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSEVVVYSTTISSLSTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVILHDQGENDDLLSCPATRILDDLHKHRDVIVTPFLKDAVSDSGLGSCDEKGLEYDILLEPNTPWGPKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEVTKKQRKKEKPKKFTKQPKKQLSSPCSQKKEKAPEKSTSRDMSPFVVSVQKNKWDASRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKSKESKEFAGGIYSRLEAQVKASAPGSARQNSSDKNPRSKSRFGQGRPA", "length": 718, "header": "tr|A0A8C2MFY0-1|A0A8C2MFY0_CRIGR Isoform 1 of Uncharacterized protein KIAA1841 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Kiaa1841 PE=4 SV=1 CANONICAL=A0A8C2MFY0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MFY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFY0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A1A5R8-1", "protein_name": "SANT and BTB domain regulator of class switch recombination", "gene_name": "Sanbr", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRGCPENNNFLTNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECVKRFDELKSCGSSPVDNQYNPLMAAGEGPVETLATYIKSSLLDAQGDFQETPVDQDTVSKAGRHSIATTRNCSSESENCTARNAGEETGDSEGPNMVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSVDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKDSKDCELPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINVNLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYFNPDSRNNAATLYRCCLCKKLLTRETERRISCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSAVNSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVLLHDQGENDDSLSCPTAKILDDLHKHKDVIAVPFLKDPVSDPGVGSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEISKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDATRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVKASVPVTARQNSSDKNQSNIPQRHLFNYVHSNFIRNSQKLETSQMFIN", "length": 737 }, "evidence": [ { "id": "A0A8C2MFY0", "url": "https://omabrowser.org/oma/group/A0A8C2MFY0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7EXN1-1", "protein_name": "SANT and BTB domain regulator of class switch recombination isoform X1", "gene_name": "sanbr", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKEEHCFQRKPRIHLEQEMNRLCSVNNNFPYDNNLLVLDIVLSSLWASPQPINWENVAKLVPGFTPKECARRFEELKTTGSFPHVDEQCNPLTGAVSSPSESFSTYIKSNVLDITRDTGEPQSNQTTLSVSGLNVLPTGRGASIETEIADPAKNIEKTEENKSPNMVIHVCDEAKNLKQDFVCPRNLLVKEMRYFEEYLSVDPQRWDEVDISVHCDVQIFDWLMNYAKSHNTEQSHGKHTEKPKLEHSNVISILISSEFLKMETLVEECIQYCHKHMSAIIATPCNMNCINNNLAGRIADLFNHNEADDLKDKKDKFKSKLFQKKIERIFDHGYQNHDSPGNASTLYRCGLCLKLLTKETERKIPCVPNKINIDARGNIVFTHSRHKAWEVHEYVNCLYEELKSWVQVYWRIWGTINFLTCSRCKQAFLCTELGQCRYHPEAVVYPGIGADHRWHGLGVYPCCNQKVLRFDPSFMPKGCKIRDHIVSAADGGDCSDHNVNSTQTRILNDLLLHRDAVCVAESSEDLSVGSENVPGCDVMLEPGVLTAHRPKETTAFSLLKNWSLQLRQQSLLSEDEEYTTGSEVTEDEVGDEEDTSKKQAAKKARKSGKPLKRQVSSPNFHRKEKSGEKAPSRDTTPFTVSIQKNKWDSNRSMRYNQDAQREEDQRRMEEIIANLTKMRFGDQEQTKFKDTKEPAGGLYSRLEAQFKASSQSSARQSSSEKTLRAKTRSGPSRPT", "length": 735 }, "evidence": [ { "id": "A0A8C2MFY0", "url": "https://omabrowser.org/oma/group/A0A8C2MFY0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68FF0-1", "protein_name": "SANT and BTB domain regulator of class switch recombination", "gene_name": "Sanbr", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRGYPENNNFLNNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECVKRFDELKSCGSSPVDNQYNPLMATGEGPVETLATYIKSSLLDTQGDFQETPVDQDTVSKAGRHSIATTRNCSSESENCTARNAGEETGESEGPNMVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKESKDCEIPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINANLLTRIADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYSNPDSRNNAATLYRCCLCKKLLTRETERRIPCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTVNWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSTVNSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVVLHDQGENDDSPSCPPAKILDDLHKHKDVIAVPFLKDAVSDPGVGSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEIAKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDASRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVRASVPVTARQNSSDKNQRSKSRFGQGRPA", "length": 718 }, "evidence": [ { "id": "A0A8C2MFY0", "url": "https://omabrowser.org/oma/group/A0A8C2MFY0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NSI8-1", "protein_name": "SANT and BTB domain regulator of class switch recombination", "gene_name": "SANBR", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRGYSENNNFLNNNNQMVLDMILYPLIGIPQTINWETIARLVPGLTPKECAKRFDELKSSGSSPVDNQYNSLMAAGESPVETLATYIKSSLLDIHGEFQETPVGHDAVSKTGRHSIASTRNCSSESENCTTHNGGEMTEESEGPNMVIHVCDEAKNLKEDFTCPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYIKRNTKENKDCEMPTLEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVATPCNMNCINANLLTRIADLFSHNEVDDLKDKKDKFKSKLFCKKIERLFDPEYLNPDSRSNAATLYRCCLCKKLLTKETERRIPCIPGKINVDRRGNIVYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTINWLTCSRCYQAFLCIEFSHCQYHSETVVYPTAASSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVTLRDQGEGGDLPSCPTARMLDDLHKYRDVIVVPFSKDTVSDVGVGLCDEKGIECDVLLEPNTPWGPKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEVTEDEVGDEEEVSKKQRKKEKPKKFTRQPKKQVSSPCAQRKEKALEKSASRDVSPFVMSMQKNKWDATRSLRFNQDAQREDDQRRMTEITGHLIKMRLGDLDRVKSKEAKEFAGGIYSRLEAQIKASVPVSARQSSSEKNTRSKSRFGQGRPA", "length": 718 }, "evidence": [ { "id": "A0A8C2MFY0", "url": "https://omabrowser.org/oma/group/A0A8C2MFY0/", "database": "OMA" } ], "glygen_name": "Human", 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283072", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283072" } ] }, { "annotation": "Plays a role in mitochondrial morphogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03#function" }, { "database": "UniProtKB", "id": "ARBA00002812", "url": "https://www.uniprot.org/uniprotkb/ARBA00002812#function" }, { "database": "UniProtKB", "id": "A0A8C2QJZ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJZ4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem11", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03", "locus": {} } ], "crossref": [ { "id": "100773664", "url": "https://www.ncbi.nlm.nih.gov/gene/100773664", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773664", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773664", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MG03", "url": "https://www.orthodb.org/?gene=A0A8C2MG03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15099:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15099:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14972", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14972", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283072", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283072", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MG03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MG03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJZ4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAWGRRRLGPGGGGSRERVSLSATDCYIVHEIYSGENAQDQFEYELEQALEAQYKYIVIEPTRIGDETARWITVGNCLHKTAVLAGTACLFTPLALPLDYSHYISLPAGVLSLACCTLYGISWQFDPCCKYQVEYDAYKLSRLPLHTLTSSTPVVLVRKDDLHRKRLHNTIALAALVYCVKKVYELYAV", "length": 190, "header": "tr|A0A8C2MG03-1|A0A8C2MG03_CRIGR Isoform 1 of Transmembrane protein 11, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem11 PE=3 SV=1 CANONICAL=A0A8C2MG03-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MG03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03/entry", "sequence": { "sequence": "MAAWGRRRLGPGGGGSRERVSLSATDCYIVHEIYSGENAQDQFEYELEQALEAQYKYIVIEPTRIGDETARWITVGNCLHKTAVLAGTACLFTPLALPLDYSHYISLPAGVLSLACCTLYGISWQFDPCCKYQVEYDAYKLSRLPLHTLTSSTPVVLVRKDDLHRKRLHNTIALAALVYCVKKVYELYAV", "length": 190, "header": "tr|A0A8C2MG03-1|A0A8C2MG03_CRIGR Isoform 1 of Transmembrane protein 11, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem11 PE=3 SV=1 CANONICAL=A0A8C2MG03-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QJZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJZ4/entry", "sequence": { "sequence": "MIVGMVSLSATDCYIVHEIYSGENAQDQFEYELEQALEAQYKYIVIEPTRIGDETARWITVGNCLHKTAVLAGTACLFTPLALPLDYSHYISLPAGVLSLACCTLYGISWQFDPCCKYQVEYDAYKLSRLPLHTLTSSTPVVLVRKDDLHRKRLHNTIALAALVYCVKKVYELYAV", "length": 176, "header": "tr|A0A8C2QJZ4-1|A0A8C2QJZ4_CRIGR Computationally mapped isoform of Transmembrane protein 11, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem11 PE=3 SV=1 CANONICAL=A0A8C2MG03-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773664", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773664", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "inner mitochondrial membrane organization", "id": "GO:0007007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007007", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG03" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"https://www.ncbi.nlm.nih.gov/protein/XP_007648648" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 531 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614770.1) and transcript sequences (IACG01093837.1 and IACG01096243.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007648648.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007648648", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648648" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG35", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc102a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35", "locus": {} } ], "crossref": [ { "id": "100766334", "url": "https://www.ncbi.nlm.nih.gov/gene/100766334", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766334", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766334", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MG35", "url": "https://www.orthodb.org/?gene=A0A8C2MG35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46292:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46292:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007648648", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648648", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MG35", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MG35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHGPSPRLAESPQLSKSSLLTILGSPSPDRMGPADSLPPTPPSGTPSPGPPPTLPLPAPALLADGDWESREELRLRELEEARARAAQMEKTMRWWSDCTANWREKWSKVRAERNRAREEVRQLRQRLDTLTKELAGARRERQEAQGECEARGRELARLRGAHGTVDKTHDGPEPEREHEPVRDIGAERPPGSQELDLVESLLKSRPEETEGCWDACSMAAGGSRASSGRQDRNRLPWEDTASTEEDASKLTALRLRLDESQKVLLKEREDKLALSRSIEKLEGELSQWKIKYEELSKTKQEVLKQLSILKETHQDELGRMSEDLEDELGARSSMDRKMAELRGEMERLQAENAAEWGRRERLETEKLGLERENKKLRAQVGDLEEALARRRRQNASALDCDLRASQAALFEKNKELADLKHLHGKLKKQFQEKVAELAHANRRVEQHETEVKKLRLRVEELKKELAQAEDELDEAHNQARKLQRSLDEQTEQSENLQVQLEHLQSRLRRQQQNAPLFGKIRSTRFGTEEAGDGASDLDEDEDLQIQVA", "length": 549, "header": "tr|A0A8C2MG35-1|A0A8C2MG35_CRIGR Isoform 1 of Coiled-coil domain-containing protein 102A OS=Cricetulus griseus OX=10029 GN=Ccdc102a PE=4 SV=1 CANONICAL=A0A8C2MG35-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MG35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35/entry", "sequence": { "sequence": "MSHGPSPRLAESPQLSKSSLLTILGSPSPDRMGPADSLPPTPPSGTPSPGPPPTLPLPAPALLADGDWESREELRLRELEEARARAAQMEKTMRWWSDCTANWREKWSKVRAERNRAREEVRQLRQRLDTLTKELAGARRERQEAQGECEARGRELARLRGAHGTVDKTHDGPEPEREHEPVRDIGAERPPGSQELDLVESLLKSRPEETEGCWDACSMAAGGSRASSGRQDRNRLPWEDTASTEEDASKLTALRLRLDESQKVLLKEREDKLALSRSIEKLEGELSQWKIKYEELSKTKQEVLKQLSILKETHQDELGRMSEDLEDELGARSSMDRKMAELRGEMERLQAENAAEWGRRERLETEKLGLERENKKLRAQVGDLEEALARRRRQNASALDCDLRASQAALFEKNKELADLKHLHGKLKKQFQEKVAELAHANRRVEQHETEVKKLRLRVEELKKELAQAEDELDEAHNQARKLQRSLDEQTEQSENLQVQLEHLQSRLRRQQQNAPLFGKIRSTRFGTEEAGDGASDLDEDEDLQIQVA", "length": 549, "header": "tr|A0A8C2MG35-1|A0A8C2MG35_CRIGR Isoform 1 of Coiled-coil domain-containing protein 102A OS=Cricetulus griseus OX=10029 GN=Ccdc102a PE=4 SV=1 CANONICAL=A0A8C2MG35-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 41, "start_aa": "Thr", "end_pos": 41, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr41", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 46, "start_aa": "Thr", "end_pos": 46, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr46", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG35", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG35", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766334", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766334", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "myosin complex", "id": "GO:0016459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016459", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG35", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MG35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG35" }, { "id": "PF01576", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01576" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin tail", "eco_id": "ECO_0000259", "start_pos": 316, "end_pos": 508, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 41, 46 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 395, "end_pos": 397 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MG67-1", "uniprot_ac": "A0A8C2MG67", "uniprot_id": "A0A8C2MG67_CRIGR", "mass": { "chemical_mass": 71685.0, "monoisotopic_mass": 71685.0 }, "refseq": { "ac": "XP_003500267", "name": "kelch repeat and BTB domain-containing protein 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500267" }, "gene_names": [ { "name": "Kbtbd12", "type": "recommended", "evidence": [ { "id": "A0A8C2MG67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67" } ] }, { "name": "Kbtbd12", "type": "synonym", "evidence": [ { "id": "XP_003500267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500267" } ] } ], "protein_names": [ { "name": "Kelch repeat and BTB domain-containing protein 12", "type": "synonym", "evidence": [ { "id": "A0A8C2MG67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67/entry#names_and_taxonomy" } ] }, { "name": "kelch repeat and BTB domain-containing protein 12", "type": "synonym", "evidence": [ { "id": "XP_003500267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500267" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613782.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500267", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500267" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG67", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kbtbd12", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67", "locus": {} } ], "crossref": [ { "id": "cd18276", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18276", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18485", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18485", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766790", "url": "https://www.ncbi.nlm.nih.gov/gene/100766790", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766790", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DYWRDGP", "url": "https://omabrowser.org/oma/group/DYWRDGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MG67", "url": "https://www.orthodb.org/?gene=A0A8C2MG67", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF491", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF491", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500267", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500267", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MG67", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MG67-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MECQTGGKGKHQHSLTLLDKIKNMKELEEMIDVVLIAEEEKFPCHRLVLASFSPYFKAMFTCGLLECTQREVILYDITAESVSVILNYMYSAVLEINNANVQTVAMAAYFMQMEEVFEVCQKYMMDHMDASNCIGIYYFAKQIGAEDLADQSKKYLYQHFAEVSLHGEILDIEAHQLLALIKSDDLNITREESILDLVLRWVNHNQALRTEHLVELLRQVRLELINASFLRQALRRNTMLLCDGNCIDIIQNAFKAIKMPQQHAPHLRYGMETTSLLLCIGNNSSGIRSRHRNYGDASFCYDPVSRKTYFISSPKYGEGLGTVCTGVVMENNTVIVAGEATASRLSRQKSKNIEIYRYHERGNQFWEKLCTAEFRELYALGSIHNDLYVIGGQMKIKNQYLITNCVDKYSIDQDNWKRVSPLPLQLACHAVVTVNNKLYVIGGWTPQMDLPDEEPDRLSNKLWQYDPSQDQWKERAPMQYSKYRFSAVVVNSEIYVLGGIGCVGRDKGQVRKCLDVVEIYNPDGDFWREGPPMPSPLLSLRTNSTNAGAVDGKLYVCGGFHGADRHEVISKEILELDPWENQWNVVAINVLMHDSYDVCLVARMNPRDLIPPPSDLIEEGDNHRRQR", "length": 627, "header": "tr|A0A8C2MG67-1|A0A8C2MG67_CRIGR Isoform 1 of Kelch repeat and BTB domain-containing protein 12 OS=Cricetulus griseus OX=10029 GN=Kbtbd12 PE=4 SV=1 CANONICAL=A0A8C2MG67-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MG67-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67/entry", "sequence": { "sequence": "MECQTGGKGKHQHSLTLLDKIKNMKELEEMIDVVLIAEEEKFPCHRLVLASFSPYFKAMFTCGLLECTQREVILYDITAESVSVILNYMYSAVLEINNANVQTVAMAAYFMQMEEVFEVCQKYMMDHMDASNCIGIYYFAKQIGAEDLADQSKKYLYQHFAEVSLHGEILDIEAHQLLALIKSDDLNITREESILDLVLRWVNHNQALRTEHLVELLRQVRLELINASFLRQALRRNTMLLCDGNCIDIIQNAFKAIKMPQQHAPHLRYGMETTSLLLCIGNNSSGIRSRHRNYGDASFCYDPVSRKTYFISSPKYGEGLGTVCTGVVMENNTVIVAGEATASRLSRQKSKNIEIYRYHERGNQFWEKLCTAEFRELYALGSIHNDLYVIGGQMKIKNQYLITNCVDKYSIDQDNWKRVSPLPLQLACHAVVTVNNKLYVIGGWTPQMDLPDEEPDRLSNKLWQYDPSQDQWKERAPMQYSKYRFSAVVVNSEIYVLGGIGCVGRDKGQVRKCLDVVEIYNPDGDFWREGPPMPSPLLSLRTNSTNAGAVDGKLYVCGGFHGADRHEVISKEILELDPWENQWNVVAINVLMHDSYDVCLVARMNPRDLIPPPSDLIEEGDNHRRQR", "length": 627, "header": "tr|A0A8C2MG67-1|A0A8C2MG67_CRIGR Isoform 1 of Kelch repeat and BTB domain-containing protein 12 OS=Cricetulus griseus OX=10029 GN=Kbtbd12 PE=4 SV=1 CANONICAL=A0A8C2MG67-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG67", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG67", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766790", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766790", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZQ37-1", "protein_name": "Kelch repeat and BTB domain containing 12", "gene_name": "Kbtbd12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESKTEGKGKHQHSLNLLDKIKTMKELEEMVDVVLIAEEEKFPCHRLVLAAFSPYFKAMFTCGLLECTQKEVILYDITAESVSVILNYMYSAVLEINNANVQTVAMAAYFMQMEEVFSVCQNYMMDHMDASNCIGIYYFAKQIGAEDLSDQSKKYLYQHFAEVSLHGEILDIEAHQLLALIKSDDLNISREESILDLVLRWVNHNQALRTEHLVELLKQVRLELINASFLRQALRRNTMLLCDGSCIDMIQNAFKAIKTPQQHSSNLRYGMETTSLLLCIGNNSSGIRSRHRSYGDASFCYDPVSQKTYFISSPKYGEGLGTVCTGVVMENNTIIVAGEATATRLSRQKSKNIEIYRYHDRGNRFWEKLCTAEFRELYALGSIHNDLYVIGGQMKVKNQYLITNCVDKYSVDQDNWKRVSPLPLQLACHAVVSVNNKLYVIGGWTPQMDLPDEEPDRLSNKLLQYDPSQDQWRERAPMQYSKYRFSAAVVNSEIYVLGGIGCLGRDKGQVRKCLDVVEIYNPDGDFWREGPPMPSPLLSLRTNSTSAGAVDGKLYVCGGFHGADRHEVISKEILELDPWENQWNVVAVNVLMHDSYDVCLVARMNPRDLIPPPSDLTEEDGDRRQQR", "length": 627 }, "evidence": [ { "id": "A0A8C2MG67", "url": "https://omabrowser.org/oma/group/A0A8C2MG67/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MLX7-1", "protein_name": "Kelch repeat and BTB domain containing 12", "gene_name": "KBTBD12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEYKSEGKEKYQHSLNLLNKIKSMKDLAEMIDVVIIAEGEAFPCHRLVLAAFSPYFKAMFTCGLLECTQREVVLHDITAESVAVLLRYMYHAALEVSNANVQTVAMAAYFMQMEDVFQACQKHMMAHMDASNCVGIYYFAKQIGAEDLADQSRKYLYRHFAEVSLHEEILEVEVHQLLTLIQSDDLNVSREESILDLVLRWVNHRPDRRTEHLVELLKQVRLQLVSPSFLRQALRRNTVLLCDANCIDLIQNAFKAIKTPQPHALSLRYGMETTSLLLCIGTNASGIRSRHRNYGDASFCYDPVSRKTCFISSPKYGEGLGTVCTGVVMEDNSVIVAGEASASKLSRQKSKSVEIYRYHDRGNQFWEKLCTAEFRELYALGAVHNDLYVIGGQMKVKNQYLITNCVDKYSVERDTWKRVSPLPLQLACHAVATVNNKLYVIGGWTPQMDLPDEEPDRLSNKLLRYDPSQDQWTERAPMKYSKYRFSTAVVNSEIYVLGGIGCVGRDKGQVRKCLDAVEIYNPDGDFWREGPPMPVPLLALRSNSTSAGAVDGKLYVCGGFHGADRHEVICKEILELDPWENQWNVVAVDVLMHDSYDVCLVARMNPRDLIPPPSDLVEEGGGR", "length": 623 }, "evidence": [ { "id": "A0A8C2MG67", "url": "https://omabrowser.org/oma/group/A0A8C2MG67/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SPF5-1", "protein_name": "Kelch repeat and BTB domain containing 12", "gene_name": "KBTBD12", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MECKSEGKEKFQHGLYLLNKIKNMKELAEMIDVVLIAEEEKFPCHRLVLAAFSPYFKAMFTCGLLECTQREVILYDITAESVSVILNYMYSAALEISNANVQTVAMAAYFMQMEEVFQVCQKYMMDHMDASNCVGIYYFAKQIGAEDLADQSKKYLYQHFAEVSLHEEILEIEVHQFLMLIKSDDLNITREESILDLVLRWVNHNRALRTEHLVELLKQVRLQLISPSFLRQALRRNTMLLCDAGCIDIIQNAFKAIKTPQPHALNLRYGMETTSLLLCIGNNSSGIRSRHRNYGDASFCYDPASRKTYFISSPKYGEGLGTVCTGVVMENNTIIVAGEASASRLSRQKSKNVEIYRYHDRGNQFWEKLCTTEFRELYALGSVNNDLYVIGGQMKIKNQYLITNYVDKYSAERDSWKRVAPLPLQLACHAVVTVNNKLYVIGGWTPQMDLPDEEPDRLSNKLLKYDPSQDQWTERAPMQYAKYRFSTAVVNSEIYVLGGIGCIGRDKGQVRKCLDVVEIYNPDGDFWREGPPMPSPLLSLRTNSTSAGAVDGKLYVCGGFHGADRHEVISKEILELDPWENQWNVVAIDVLMHDSYDVCLVARMNPRDLIPPPSDLVEEGGGH", "length": 623 }, "evidence": [ { "id": "A0A8C2MG67", "url": "https://omabrowser.org/oma/group/A0A8C2MG67/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q3ZB90-1", "protein_name": "Kelch repeat and BTB domain-containing protein 12", "gene_name": "kbtbd12", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRAKHGLTLLEQLNRMRDAEQLTDVVLVAEGVSFPCHRAVLSAFSPYFRVMFTCGLRECSNRQVVLRDMPAPSLALLLEYMYSSNLPLTADNVQGISVAAFLLQMDDVFSRCQIYMIDNMDTTNCLGIYYYARDLGAEELADQAQRYLRQHFTEVCYGEEVLELEAHQLGALLSSDDLNVSREESILDVVMRWVKYCPGDVGSEEENRARHLPELLKKVRLPLVGVDYLKGTMKRNTALLVDAECLQIMEEAIEAASLDSDAPPRRLKLRYGMETTDLLLCIGNEGGGIRSRYGSYTERSFCYAPTTGRTLFITSPRYGEALGYVFAGVVTEKNEIVVSGELGARKMARHKDKNVEIFMYNKEAQGSWKHLSSAEYRDSYALSSLGENLYLIGGQMKLKNQYHITNSVERWSLQGGPWRSTAPLPMPLAYHSVVRMKGRLYVLGGRTPQSFRTDDEPDRMSNRLLEYDPETNKWNELGPMKFSKYRCSAVALNGEIYVLGGIGCEGVDRGQSRYCLNVVEIYNPDGDFWRDGPPLPWPLLTLRSNASNAGVVDGKLYVCGYYKGADRHDTITKDILQLDPWENVWTVVAKQALMHDSYDVCLVANLNPRGLMPPPADLVEE", "length": 623 }, "evidence": [ { "id": "A0A8C2MG67", "url": "https://omabrowser.org/oma/group/A0A8C2MG67/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3ZCT8-1", "protein_name": "Kelch repeat and BTB domain-containing protein 12", "gene_name": "KBTBD12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MECKIEGKEKYQHSLNLLNKIQNMKELAEMIDVVLTAEGEKFPCHRLVLAAFSPYFKAMFTCGLLECNQREVILYDITAESVSVLLNYMYNAALEINNANVQTVAMAAYFMQMEEVFSVCQKYMMDHMDASNCLGIYYFAKQIGAEDLSDRSKKYLYQHFAEVSLHEEILEIEVHQFLTLIKSDDLNISREESILDLVLRWVNHNKELRTVHLVELLKQVRLELVNPSFLRQALRRNTMLLCDADCVDIIQNAFKAIKTPQQHSLNLRYGMETTSLLLCIGNNSSGIRSRHRSYGDASFCYDPVSRKTYFISSPKYGEGLGTVCTGVVMENNTIIVAGEASASKLSRQKNKNVEIYRYHDRGNQFWEKLCTAEFRELYALGSIHNDLYVIGGQMKIKNQYLITNCVDKYSVERDNWKRVSPLPLQLACHAVVTVNNKLYVIGGWTPQMDLPDEEPDRLSNKLLQYDPSQDQWSVRAPMKYSKYRFSTAVVNSEIYVLGGIGCVGQDKGQVRKCLDVVEIYNPDGDFWREGPPMPSPLLSLRTNSTNAGAVDGKLYVCGGFHGADRHEVISKEILELDPWENQWNVVAINVLMHDSYDVCLVARMNPRDLIPPPSDLVEEGNEH", "length": 623 }, "evidence": [ { "id": "A0A8C2MG67", "url": "https://omabrowser.org/oma/group/A0A8C2MG67/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D618-1", "protein_name": "Kelch repeat and BTB domain-containing protein 12", "gene_name": "Kbtbd12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MECKTKGKHQHSLNLLDKIKNMKELEEMIDVVLIAEEEKFPCHRLVLAAFSPYFKAMFTCGLLECTQREVILYDITAESVSVILNYMYSAVLEINNANVQTVAMAAYFMQMEEVFSVCQNYMMDHMDASNCIGIYYFAKQIGAEDLSDQSKKYLYQHFAEVSLHGEILDIEAHQLLALIKSDDLNISREESILDLVLRWVNHNQALRTEHLVELLKQVRLELINASFLRQALRRNTMLLCDGSCIDIIQNAFKAIKTPQQHPSNLRYGMETTSLLLCIGNNSSGIRSRHRSYGDASFCYDPVSHKTYFISSPKYGEGLGTVCTGVVMENNTVIVAGEATATRLSRQKSKNIEIYRYHDRGNQFWEKLCTAEFRELYALGSIHNDLYVIGGQMKIKNQYLITNCVDKYSVDQDNWKRVSPLPLQLACHAVVTVNNKLYVIGGWTPQMDLPDEEPDRLSNKLLQYDPSQDQWRERAPMRYSKYRFSAAVVNSEIYVLGGIGCVGRDKGQVRKCLDVVEIYNPDGDFWREGPPMPSPLLSLRTNSTSAGAVDGKLYVCGGFHGADRHEVISKEILELDPWENQWNVVAINVLMHDSYDVCLVARMNPRDLIPPPSDLIEEDGDHRGQR", "length": 625 }, "evidence": [ { "id": "A0A8C2MG67", "url": "https://omabrowser.org/oma/group/A0A8C2MG67/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MG67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG67" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 98, "start_aa": "Ile", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 187, "end_pos": 189 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 282, "end_pos": 284 }, { "start_pos": 283, "end_pos": 285 }, { "start_pos": 331, "end_pos": 333 }, { "start_pos": 543, "end_pos": 545 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MPX5-1", "uniprot_ac": "A0A8C2MPX5", "uniprot_id": "A0A8C2MPX5_CRIGR", "mass": { "chemical_mass": 154740.0, "monoisotopic_mass": 154740.0 }, "refseq": { "ac": "XP_003500479", "name": "zinc finger MYM-type protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500479" }, "gene_names": [ { "name": "Zmym2", "type": "recommended", "evidence": [ { "id": "A0A8C2MPX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5" } ] }, { "name": "Zmym2", "type": "synonym", "evidence": [ { "id": "XP_003500479", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500479" } ] } ], "protein_names": [ { "name": "Zinc finger MYM-type protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MPX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger MYM-type protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003500479", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500479" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613790.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500479", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500479" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zmym2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5", "locus": {} } ], "crossref": [ { "id": "100762715", "url": "https://www.ncbi.nlm.nih.gov/gene/100762715", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051284", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051284", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762715", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762715", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEPTCHF", "url": "https://omabrowser.org/oma/group/KEPTCHF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MG69", "url": "https://www.orthodb.org/?gene=A0A8C2MG69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MPX5", "url": "https://www.orthodb.org/?gene=A0A8C2MPX5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45736:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45736:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12012", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12012", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500479", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500479", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MG69", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MG69-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METSSVGTLELTDQTPVLLGSTAMATSLTNVGNSFSGPSNPLVSRSSKFQNSSMEDDDDVVFIEPVQPPPSSAPLVADQRTITFTSSKNEELQGNDPKILPSSKELASQKGSVSETIVIDDEEDIETNQGQEKNSSNFIERRPSETKNRTNDVDFSPTFSRSKVNTGMGNSGITTEPDSEIQIANVTTLETGISSVNDGQIENTDGRDMNLMITHVTSLHNTNLGDVTNGLQSSNFGVNVQTYTPSLTSQTKSGVGPFNPGRMNVAGDVFQNGESAPHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPPTQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGTLNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQKRFCCQSCVSEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQNIPVPTTVPVPVPVPVFLPAPLDSSEKISTSVEDLKSKVSSDPLDTELLTMTDMMTEDGKTEASDVNSVIIETDIIGSDLTKNSDPDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLHEDLLVLDELKSPKSVKLKEDLLSHTTAELSCGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELSKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDNEDKIATGKRKHEDDEPVFEQIENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSADSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "length": 1375, "header": "tr|A0A8C2MPX5-1|A0A8C2MPX5_CRIGR Isoform 1 of Zinc finger MYM-type protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zmym2 PE=4 SV=1 CANONICAL=A0A8C2MPX5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MG69-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG69/entry", "sequence": { "sequence": "METSSVGTLELTDQTPVLLGSTAMATSLTNVGNSFSGPSNPLVSRSSKFQNSSMEDDDDVVFIEPVQPPPSSAPLVADQRTITFTSSKNEELQGNDPKILPSSKELASQKGSVSETIVIDDEEDIETNQGQEKNSSNFIERRPSETKNRTNDVDFSPTFSRSKTKSGVGPFNPGRMNVAGDVFQNGESAPHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPPTQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGTLNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQKRFCCQSCVSEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQNIPVPTTVPVPVPVPVFLPAPLDSSEKISTSVEDLKSKVSSDPLDTELLTMTDMMTEDGKTEASDVNSVIIETDIIGSDLTKNSDPDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLHEDLLVLDELKSPKSVKLKEDLLSHTTAELSCGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELSKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDNEDKIATGKRKHEDDEPVFEQIENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSADSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "length": 1288, "header": "tr|A0A8C2MG69-1|A0A8C2MPX5_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zmym2 PE=4 SV=1 CANONICAL=A0A8C2MPX5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MPX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5/entry", "sequence": { "sequence": "METSSVGTLELTDQTPVLLGSTAMATSLTNVGNSFSGPSNPLVSRSSKFQNSSMEDDDDVVFIEPVQPPPSSAPLVADQRTITFTSSKNEELQGNDPKILPSSKELASQKGSVSETIVIDDEEDIETNQGQEKNSSNFIERRPSETKNRTNDVDFSPTFSRSKVNTGMGNSGITTEPDSEIQIANVTTLETGISSVNDGQIENTDGRDMNLMITHVTSLHNTNLGDVTNGLQSSNFGVNVQTYTPSLTSQTKSGVGPFNPGRMNVAGDVFQNGESAPHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPPTQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGTLNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQKRFCCQSCVSEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQNIPVPTTVPVPVPVPVFLPAPLDSSEKISTSVEDLKSKVSSDPLDTELLTMTDMMTEDGKTEASDVNSVIIETDIIGSDLTKNSDPDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLHEDLLVLDELKSPKSVKLKEDLLSHTTAELSCGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELSKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDNEDKIATGKRKHEDDEPVFEQIENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSADSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "length": 1375, "header": "tr|A0A8C2MPX5-1|A0A8C2MPX5_CRIGR Isoform 1 of Zinc finger MYM-type protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zmym2 PE=4 SV=1 CANONICAL=A0A8C2MPX5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J1/entry", "sequence": { "sequence": "METSSVGTLELTDQTPVLLGSTAMATSLTNVGNSFSGPSNPLVSRSSKFQNSSMEDDDDVVFIEPVQPPPSSAPLVADQRTITFTSSKNEELQGNDPKILPSSKELASQKGSVSETIVIDDEEDIETNQGQEKNSSNFIERRPSETKNRTNDVDFSPTFSRSKVNTGMGNSGITTEPDSEIQIANVTTLETGISSVNDGQIENTDGRDMNLMITHVTSLHNTNLGDVTNGLQSSNFGVNVQTYTPSLTSQTKSGVGPFNPGRMNVAGDVFQNGESAPHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPPTQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGTLNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQKRFCCQSCVSEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQNIPVPTTVPVPVPVPVFLPAPLDSSEKISTSVEDLKSKVSSDPLDTELLTMTDMMTEDGKTEASDVNSVIIETDIIGSDLTKNSDPDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLHEDLLVLDELKSPKSVKLKEDLLSHTTAELSCGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELSKILRSWQPSILPDVLSI", "length": 1191, "header": "tr|A0A9J7F2J1-1|A0A9J7F2J1_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zmym2 PE=4 SV=1 CANONICAL=A0A8C2MPX5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 839, "start_aa": "Thr", "end_pos": 839, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr839", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG69", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG69" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG69", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG69" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762715", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762715", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M5N1-1", "protein_name": "Zinc finger MYM-type containing 2", "gene_name": "ZMYM2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDTGSAGGLEVTDQTPVLLGRTAMAASLTDVGNSFSGPPNPLVNRSNKFQSSSVEDDDDVVFIEPVQPPPPCAPVVADQRTITFTSSKNEELPGNDSKILPSSKELASQKGSVSETIVIDDEEDMETNQGQEKNSSSFIERRPSESKNRTNDVDFSPSSFSRSKVNAGMGNSGITTEPDSEIQIANVTTLETGVGSVSDGQLEHTDGRDMNLMITHVTSLQNASLGDVSNGLQSSNFGVNMQTYTPSLTSQTKTAVGPFNPGRMNVAGDAFQNGESAAHHNPDSWISQSASFPRNQKQPGVDSLSPVASLPKQIFQPSAQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQNPTKGALNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVVDGQQKRFCCQSCVSEYKQVGSHPGFLKEVRDHTPDSFLTQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATRELDGVVRDFCSEECCRRFQDWYYKAARCDCCKSQGALRERVQWRGEMKHFCDQHCLLRFYCQQSEPNMTTQRGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAVLCKPLTMTKATYCKPHMQSKSCQTDGDWRTEYVPVPIPVPVYIPVPMHMYSQSIPVPTTVPVPVPVPVFLPAPLDSGEKTAVPEELKSTGSSDALGTELLTMTDMTEDEGKAEGADLHNVIIETDIIGSDLLKSAEPETQSSMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYAYGVNAWRHWVRTRRFEEDLLVLDGLTPPKSVKLKEDLLSHTTAELDYGLAHFVNEIRRPNGESYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQTFEQELNKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDSEDKITTGKRKHEDDEPVFEQIENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSADSPVWYTSASLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "length": 1375 }, "evidence": [ { "id": "A0A8C2MPX5", "url": "https://omabrowser.org/oma/group/A0A8C2MPX5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6AEP0-1", "protein_name": "Zinc finger MYM-type containing 2", "gene_name": "Zmym2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTSSVGTLELTDQSPVLLGSTAMATSLTNVGNSFSGPPNPLVSRSSKFQNSSVEDDDDVVFIEPVQPPPSSAPLVADQRPITFTSSKNEELQGNDPKILPSSKELAPQKGSVSETIVIDDEEDMETNQGQEKNSSNFIERRPSETKNRTNDVDFSSSTFSRSKVNAGMSNSGITTEPDSEIQIANVTTLETGVSSVSDGQLESTDGRDMNLMITHVTSLHNTSLGDSSNGLQSSNFGVNIQTYTPSLTSQTKTGVGPFNPGRMNVAGDVFQNGESAPHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQNFQPSNQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGALNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQKRFCCQSCVSEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSRTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQSIPVPTTVPVPVPVPVFLPAPLENSEKIPASVEDLKSKVSSDPLDTELLTMTDMMTEEEGKTEASNINSVIIETDIIGSDLTKNSDSDIQSNMPDVPYEPDLDIEIDFPREELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLDEDLLELDELKSSKSVKLKEDLLSHTTAELNYGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELNKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDNEDKIATGKRKHEDDEPVFEQVENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSTDSPVWYTSASLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "length": 1374 }, "evidence": [ { "id": "A0A8C2MPX5", "url": "https://omabrowser.org/oma/group/A0A8C2MPX5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CU65-1", "protein_name": "Zinc finger MYM-type protein 2", "gene_name": "Zmym2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSSVGTLELTDQTPVLLGSTAMATSLTNVGNSFSGPPNPLVSRSSKFQNSSVEDDDDVVFIEPVQPPPSSAPLVADQRPITFTSSKNEELQGNDPKILPSSKELAPQKGSVSETIVIDDEEDMETNQGQEKSSSNFIERRPSETKNRTNDVDFSSSTFSRSKVNAGVSNSGITTEPDSEIQIANVTTLETGVSSVSDGQLESTDGRDMNLMITHVTSLHNTSLGDGSNGLQSSNFGVNIQTYTPSLTSQTKAGVGPFNPGRMNVAGDVFQNGESAPHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPSNQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGALNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVVDGQQKRFCCQSCVTEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQNIPVPTTVPVPVPVPVFLPAPLDSSEKIPATVEDLKSKVSSDPLDSELLTMTDMMTEEEGKAEASNINSVIIETDIIGSDLTKNSDPDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLDEDLLVLDELKSSKSVKLKEDLLSHTTAELNYGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELNKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDNEDKIATGKRKHEDDEPVFEQVENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSTDSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "length": 1376 }, "evidence": [ { "id": "A0A8C2MPX5", "url": "https://omabrowser.org/oma/group/A0A8C2MPX5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UBW7-1", "protein_name": "Zinc finger MYM-type protein 2", "gene_name": "ZMYM2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDTSSVGGLELTDQTPVLLGSTAMATSLTNVGNSFSGPANPLVSRSNKFQNSSVEDDDDVVFIEPVQPPPPSVPVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVIDDEEDMETNQGQEKNSSNFIERRPPETKNRTNDVDFSTSSFSRSKVNAGMGNSGITTEPDSEIQIANVTTLETGVSSVNDGQLENTDGRDMNLMITHVTSLQNTNLGDVSNGLQSSNFGVNIQTYTPSLTSQTKTGVGPFNPGRMNVAGDVFQNGESATHHNPDSWISQSASFPRNQKQPGVDSLSPVASLPKQIFQPSVQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQNPTKGALNKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQKRFCCQSCVSEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPYCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVAPSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKRPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQDWYYKAARCDCCKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTPNKEMKNKAVLCKPLTMTKATYCKPHMQTKSCQTDDTWRTEYVPVPIPVPVYIPVPMHMYSQNIPVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEELKSKVSSDALDTELLTMTDMMSEDEGKTETTNINSVIIETDIIGSDLLKNSDPETQSSMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGAKRKAVSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLDEDLLVLDELKSSKSVKLKEDLLSHTTAELNYGLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQTFEQELNKILRSWQPSILPDGSIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLRYQVSSLCGTDNEDKITTGKRKHEDDEPVFEQIENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPECSSSTDSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD", "length": 1377 }, "evidence": [ { "id": "A0A8C2MPX5", "url": "https://omabrowser.org/oma/group/A0A8C2MPX5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5" } ], "pmid": "" }, { "name": "ubiquitin conjugating enzyme binding", "id": "GO:0031624", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031624", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "PML body", "id": "GO:0016605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016605", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 694, "end_pos": 696, "annotation": "n_glycosylation_sequon" }, { "start_pos": 806, "end_pos": 808, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MPX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPX5" }, { "id": "SM00746", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRASH", "eco_id": "ECO_0000259", "start_pos": 330, "end_pos": 366, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 839 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 148, "end_pos": 150 }, { "start_pos": 185, "end_pos": 187 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 694, "end_pos": 696 }, { "start_pos": 806, "end_pos": 808 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MG84-1", "uniprot_ac": "A0A8C2MG84", "uniprot_id": "A0A8C2MG84_CRIGR", "mass": { "chemical_mass": 19061.0, "monoisotopic_mass": 19061.0 }, "refseq": { "ac": "XP_035295986", "name": "PRELI domain containing protein 3A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295986" }, "gene_names": [ { "name": "Prelid3a", "type": "recommended", "evidence": [ { "id": "A0A8C2MG84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG84" } ] }, { "name": "Prelid3a", "type": "synonym", "evidence": [ { "id": "XP_035295986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295986" } ] } ], "protein_names": [ { "name": "PRELI domain containing protein 3A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035295986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295986" }, { "id": "A0A8C2MG84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG84/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295986", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295986" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG84", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG84" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prelid3a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG84", "locus": {} } ], "crossref": [ { "id": "100763973", "url": "https://www.ncbi.nlm.nih.gov/gene/100763973", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763973", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763973", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MG84", "url": "https://www.orthodb.org/?gene=A0A8C2MG84", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295986", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295986", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MG84", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MG84-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIWSSEHVFGHPWDTVIKAAMRKYPNPMNPCVVGVDVLERSVDNHGRLHSLRLLSTEWGLPGLVRAILGANRTLTYIKESSVVDPAARKMELCSTNITLTNLVSVNERLVYTPHPENPEKTVLTQEAIITVKGISLGSYLESLMANTISSNAKKGWAAIEWIIEHSESAIS", "length": 172, "header": "tr|A0A8C2MG84-1|A0A8C2MG84_CRIGR Isoform 1 of PRELI domain containing protein 3A isoform X2 OS=Cricetulus griseus OX=10029 GN=Prelid3a PE=4 SV=1 CANONICAL=A0A8C2MG84-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MG84-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG84/entry", "sequence": { "sequence": "MKIWSSEHVFGHPWDTVIKAAMRKYPNPMNPCVVGVDVLERSVDNHGRLHSLRLLSTEWGLPGLVRAILGANRTLTYIKESSVVDPAARKMELCSTNITLTNLVSVNERLVYTPHPENPEKTVLTQEAIITVKGISLGSYLESLMANTISSNAKKGWAAIEWIIEHSESAIS", "length": 172, "header": "tr|A0A8C2MG84-1|A0A8C2MG84_CRIGR Isoform 1 of PRELI domain containing protein 3A isoform X2 OS=Cricetulus griseus OX=10029 GN=Prelid3a PE=4 SV=1 CANONICAL=A0A8C2MG84-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500051", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500051" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MH48", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH48" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH48", "locus": {} } ], "crossref": [ { "id": "100758262", "url": "https://www.ncbi.nlm.nih.gov/gene/100758262", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031659", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031659", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758262", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758262", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LSEPMFP", "url": "https://omabrowser.org/oma/group/LSEPMFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MH48", "url": "https://www.orthodb.org/?gene=A0A8C2MH48", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35669", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35669", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35669:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35669:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15824", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15824", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500051", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500051", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MH48", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MH48-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVRPIGWICGQVLKNFSGRLEGIQKAMMDLLDEFKDELPGILRLSKSKQKKDPVKKTSKIRMALAVAQINRGTLIQGLNSISSSSKSVAKLLQPQLACRLLELRHISHRLLREVNAPSQPLYSMQVRKGSLLDIISFPAKTALTSIIYASYAALIYLAVCVNAVLAKIKNIFQEEESIRQNRESENFRKAFSEPVLPEPMFSEGEIKAKPYRSLPEKPDNLSEHPKPPANKQSNKIQVLHSVFDQSAEVNQ", "length": 252, "header": "tr|A0A8C2MH48-1|A0A8C2MH48_CRIGR Isoform 1 of Spermatogenesis-associated protein 9 OS=Cricetulus griseus OX=10029 GN=Spata9 PE=4 SV=1 CANONICAL=A0A8C2MH48-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MH48-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH48/entry", "sequence": { "sequence": "MAVRPIGWICGQVLKNFSGRLEGIQKAMMDLLDEFKDELPGILRLSKSKQKKDPVKKTSKIRMALAVAQINRGTLIQGLNSISSSSKSVAKLLQPQLACRLLELRHISHRLLREVNAPSQPLYSMQVRKGSLLDIISFPAKTALTSIIYASYAALIYLAVCVNAVLAKIKNIFQEEESIRQNRESENFRKAFSEPVLPEPMFSEGEIKAKPYRSLPEKPDNLSEHPKPPANKQSNKIQVLHSVFDQSAEVNQ", "length": 252, "header": "tr|A0A8C2MH48-1|A0A8C2MH48_CRIGR Isoform 1 of Spermatogenesis-associated protein 9 OS=Cricetulus griseus OX=10029 GN=Spata9 PE=4 SV=1 CANONICAL=A0A8C2MH48-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MH48", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH48" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 221, "end_pos": 223 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 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ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613665.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007615782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615782" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MH71", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH71" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Chchd5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH71", "locus": {} } ], "crossref": [ { "id": "100754765", "url": "https://www.ncbi.nlm.nih.gov/gene/100754765", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031731", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754765", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754765", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QKIRRDC", "url": "https://omabrowser.org/oma/group/QKIRRDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MH71", "url": "https://www.orthodb.org/?gene=A0A8C2MH71", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47106:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47106:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06747", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06747", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16860", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16860", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007615782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MH71", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MH71-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQAALEVTARYCSRELEQYGQCVAAKPESWHRDCHHLKMSIARCTSSHPIIRQIRQACAEPFEAFEECLRLNEAAVGNCAEHMRRFLQCAEQVQPPSSPTTGEAQPQPLPAS", "length": 112, "header": "tr|A0A8C2MH71-1|A0A8C2MH71_CRIGR Isoform 1 of Coiled-coil-helix-coiled-coil-helix domain-containing protein 5 OS=Cricetulus griseus OX=10029 GN=Chchd5 PE=4 SV=1 CANONICAL=A0A8C2MH71-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MH71-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH71/entry", "sequence": { "sequence": "MQAALEVTARYCSRELEQYGQCVAAKPESWHRDCHHLKMSIARCTSSHPIIRQIRQACAEPFEAFEECLRLNEAAVGNCAEHMRRFLQCAEQVQPPSSPTTGEAQPQPLPAS", "length": 112, "header": "tr|A0A8C2MH71-1|A0A8C2MH71_CRIGR Isoform 1 of Coiled-coil-helix-coiled-coil-helix domain-containing protein 5 OS=Cricetulus griseus OX=10029 GN=Chchd5 PE=4 SV=1 CANONICAL=A0A8C2MH71-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274608", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274608" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2ML86", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML86" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cnih3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML86", "locus": {} } ], "crossref": [ { "id": "113836090", "url": "https://www.ncbi.nlm.nih.gov/gene/113836090", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836090", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836090", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VFYHFWR", "url": "https://omabrowser.org/oma/group/VFYHFWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2ML86", "url": "https://www.orthodb.org/?gene=A0A8C2ML86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12290", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12290", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03311", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03311", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274608", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274608", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2ML86", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2ML86-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4K7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4K7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4K7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 160, "header": "tr|A0A8C2ML86-1|A0A8C2ML86_CRIGR Isoform 1 of Protein cornichon homolog 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cnih3 PE=3 SV=1 CANONICAL=A0A8C2ML86-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHE9/entry", "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWSMIYTLVSS", "length": 112, "header": "tr|A0A8C2MHE9-1|A0A8C2ML86_CRIGR Computationally mapped isoform of Protein cornichon homolog 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cnih3 PE=3 SV=1 CANONICAL=A0A8C2ML86-1" }, "locus": {} }, { "isoform_ac": "A0A8C2ML86-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML86/entry", "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 160, "header": "tr|A0A8C2ML86-1|A0A8C2ML86_CRIGR Isoform 1 of Protein cornichon homolog 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cnih3 PE=3 SV=1 CANONICAL=A0A8C2ML86-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4K7/entry", "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHALVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 144, "header": "tr|A0A9J7G4K7-1|A0A9J7G4K7_CRIGR Computationally mapped isoform of Protein cornichon homolog 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cnih3 PE=3 SV=1 CANONICAL=A0A8C2ML86-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHE9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHE9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836090", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836090", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9S3Y6-1", "protein_name": "Cornichon family AMPA receptor auxiliary protein 3", "gene_name": "CNIH3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRATKHARSSFPNQGLNPSPLQQKHGVLTLDNQGSPGPELSLPEKFKICVCVLSPGIERKIIAFDELRTDFKSPIDQCNPLHALVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 177 }, "evidence": [ { "id": "A0A8C2ML86", "url": "https://omabrowser.org/oma/group/A0A8C2ML86/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AB32T7A5-1", "protein_name": "Protein cornichon homolog 3 isoform X1", "gene_name": "cnih3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFTFAAFCYMLSLVLCASLIFFAIWHITAFDELQADFKVPIDQGNPLHARERLRNIERICCLLRKQNWHSAVAKNCPVLPQLKLVLPEYSIHVLFCIMFLCAQEWLTVGLNIPLLFYNTWSRYFHSPTDTKELLYDPASVMNGDTLKFCQKEAWCKMSFFVLSFFYYLYCMIYTLVTS", "length": 178 }, "evidence": [ { "id": "A0A8C2ML86", "url": "https://omabrowser.org/oma/group/A0A8C2ML86/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D0Q0Y7-1", "protein_name": "Protein cornichon homolog 3", "gene_name": "Cnih3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCVMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 160 }, "evidence": [ { "id": "A0A8C2ML86", "url": "https://omabrowser.org/oma/group/A0A8C2ML86/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BT86-1", "protein_name": "Cornichon family AMPA receptor auxiliary protein 3", "gene_name": "CNIH3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPAHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFRCPADSSELAYDPPAVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 160 }, "evidence": [ { "id": "A0A8C2ML86", "url": "https://omabrowser.org/oma/group/A0A8C2ML86/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6ZWS4-1", "protein_name": "Protein cornichon homolog 3", "gene_name": "Cnih3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 160 }, "evidence": [ { "id": "A0A8C2ML86", "url": "https://omabrowser.org/oma/group/A0A8C2ML86/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TBE1-1", "protein_name": "Protein cornichon homolog 3", "gene_name": "CNIH3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS", "length": 160 }, "evidence": [ { "id": "A0A8C2ML86", "url": "https://omabrowser.org/oma/group/A0A8C2ML86/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2ML86", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML86" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2ML86", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { 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"protein_names": [ { "name": "Speedy protein E4A-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MHK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2/entry#names_and_taxonomy" } ] }, { "name": "speedy protein E4A-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027269576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269576" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269576", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269576" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHK2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757839", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2", "locus": {} } ], "crossref": [ { "id": "100757839", "url": "https://www.ncbi.nlm.nih.gov/gene/100757839", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757839", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757839", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YGKDHSQ", "url": "https://omabrowser.org/oma/group/YGKDHSQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MHK2", "url": "https://www.orthodb.org/?gene=A0A8C2MHK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31156", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31156", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11357", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11357", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269576", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269576", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHK2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGDPSLPPEEQCPQLSTTVSSPVIDEEIPGLPEPREEAGPPPPSARPKRKRDLSSDSEDDLAELLEPDPEPVWSVETLSGLRMKLKRRHLSTVRPEHHKVFTRLLEDPEVKKFLAWDKTLRVSDKYLLSMVIAYFSRAGLFSWQYRPIHFFLALYLANDMEEDNQAPKQDIFYFLYGKSYAQRPAFHKLRFQFIRSMGWKIWVSREECEEIQAYNPELWVWARDRTNLT", "length": 231, "header": "tr|A0A8C2MHK2-1|A0A8C2MHK2_CRIGR Isoform 1 of Speedy protein E4A-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100757839 PE=3 SV=1 CANONICAL=A0A8C2MHK2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2/entry", "sequence": { "sequence": "MAAGDPSLPPEEQCPQLSTTVSSPVIDEEIPGLPEPREEAGPPPPSARPKRKRDLSSDSEDDLAELLEPDPEPVWSVETLSGLRMKLKRRHLSTVRPEHHKVFTRLLEDPEVKKFLAWDKTLRVSDKYLLSMVIAYFSRAGLFSWQYRPIHFFLALYLANDMEEDNQAPKQDIFYFLYGKSYAQRPAFHKLRFQFIRSMGWKIWVSREECEEIQAYNPELWVWARDRTNLT", "length": 231, "header": "tr|A0A8C2MHK2-1|A0A8C2MHK2_CRIGR Isoform 1 of Speedy protein E4A-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100757839 PE=3 SV=1 CANONICAL=A0A8C2MHK2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FY99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY99/entry", "sequence": { "sequence": "MAAGDPSLPPEEQCPQLSTTVSSPVIDEEIPGLPEPREEAGPPPPSARPKRKRDLSSDSEDDLAELLEPDPEPVWSVETLSGLRMKLKRRHLSTVRPEHHKVFTRLLEDPEVKKFLAWDKTLRVSDKYLLSMVIAYFSRAGLFSWQYRPIHFFLALSRLTTQSCGCGHEIVPT", "length": 173, "header": "tr|A0A9J7FY99-1|A0A9J7FY99_CRIGR Computationally mapped isoform of Speedy protein E4A-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100757839 PE=3 SV=1 CANONICAL=A0A8C2MHK2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHK2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHK2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757839", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757839", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5IBH6-1", "protein_name": "Speedy protein E4A", "gene_name": "Spdye4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEGTPGVDSARVQEEGGRDQSLGFVEGRIQVGRIVTAGQLSLCSEEQSPQPGITRPSPGVVVDGESSGLAEPRVEATPQPPSSIQKRKRDESLDSEDDLAELFEPDPQPVWSVEMLCGLRMRLKRRRVSTVRPEHHKVFTKLLEDPVVKKFLTWDKMLRVSDKYLLSMVIAYFSRAGLFSWQYRPIHFFLALYLANDMEEDNQAPKQDIFYFLYGKSYAQRPMFHKLRFQFIRSMGWKIWVSREECEEIQAYNPDLWVWARDRTNLT", "length": 268 }, "evidence": [ { "id": "A0A8C2MHK2", "url": "https://omabrowser.org/oma/group/A0A8C2MHK2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHK2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 229, "end_pos": 231 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MHM0-1", "uniprot_ac": "A0A8C2MHM0", "uniprot_id": "A0A8C2MHM0_CRIGR", "mass": { "chemical_mass": 133399.0, "monoisotopic_mass": 133399.0 }, "refseq": { "ac": "XP_027287554", "name": "NHS-like protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287554" }, "gene_names": [ { "name": "Nhsl2", "type": "recommended", "evidence": [ { "id": "A0A8C2MHM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0" } ] }, { "name": "Nhsl2", "type": "synonym", "evidence": [ { "id": "XP_027287554", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287554" } ] } ], "protein_names": [ { "name": "NHS-like protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027287554", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287554" }, { "id": "A0A8C2MHM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287554", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287554" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHM0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nhsl2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0", "locus": {} } ], "crossref": [ { "id": "100758299", "url": "https://www.ncbi.nlm.nih.gov/gene/100758299", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758299", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758299", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MHM0", "url": "https://www.orthodb.org/?gene=A0A8C2MHM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15273", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15273", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287554", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287554", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHM0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7Y5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8X3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8X3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFYRRTVEPKRLCPRNPPQPLAELSDVSHLASLTLLRQLADLCGHSLALLEDLEEHLLALGRRTDNLYRRTMRLRRRLPCRLLGPEDDEELLAAANSGRENATATAHSRSSWRQPVNVFLSSGRPPSVEELLREAQLNLQSLLQEEYEEQYSEARLLGQTFRSSDEAPKPTPSPRPQSAKRLEFILMPAKRQLSEDEITTQGVRAPEPCLSLSTADKQTAWNDPFPLPILKEKRWLQPCSTQSDLVPINISGQQFDRHASFRHSLFNTETAVNPKSTLRRRRTIIGFSNFSQRDPGHSNSPAGSLACSATSDIRPGHSAPQVVQGRVAIGQEARFPSLTSPGLRHSSSKPTDPHQARSGPDPPGMESMAMMYNIPSSCNGPTESTFSASWKGDAFTYMTPSASSQGNQASEDGKNPSSGNSWVSLNTLPPLVSKEAATLFVTRENPAGYTGLPSYSEHPTQRRQIPERPPKIGLLAHGTPRLETGPGGNNRFRERSLSVPTDSGVTSVDYDEEQKAREACILPYASTSSEGSNSTDNIAALSTEQEVRHRRQRSKSISLKKAKKKPSPPMRSVSLLKDEPVLPPEGKLVLPKDQRPRSLCLSLEHQGHHSSHPDVQGHPPVPILKDPEGTQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREVTSPGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSTSVRVRPVVPERKSSLPPTSPMEKICKSRLSFDLPLSSSTTLDLSGMSISIRSKTKVSRHHSDTNFGAKLAQKTSPNQPIMPMVTQSDLRSVRLRSVSKSEPEDDIESPDYTEEPGAEEVFTLPERKVKPPIAEKPPLARRPPSLVHRPPSLPEEYPLTSPTKAMTPRSSVPHMKQLPQDSYTVLRKPKSPSFPSGRSPGESTAPSTLIFTPLASSSGAFFSGTQQPPQASVEDGGPKVRALPERISLQSQEEAEKKISKIPPPVPKKPSVLYLPLTSPVAQMDACMAEPRLPFSPIITLEKDAKCPSTGDDLKSPSKGVTSALHVDSEKEAISPGRSVEPSTEEKSLISDKTAEWISEEDDDVFVASRTTEDLFTVIHRSKRKLLGWKETGEGFTGSRASSHSPVKNTADSPTSESAAATGPSGSACLDAGRNDDFKALLQKKGSKATPRTRASAAELLKTTNPLARRIITQFSKDCEATDNTST", "length": 1224, "header": "tr|A0A8C2MHM0-1|A0A8C2MHM0_CRIGR Isoform 1 of NHS-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nhsl2 PE=4 SV=1 CANONICAL=A0A8C2MHM0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0/entry", "sequence": { "sequence": "MPFYRRTVEPKRLCPRNPPQPLAELSDVSHLASLTLLRQLADLCGHSLALLEDLEEHLLALGRRTDNLYRRTMRLRRRLPCRLLGPEDDEELLAAANSGRENATATAHSRSSWRQPVNVFLSSGRPPSVEELLREAQLNLQSLLQEEYEEQYSEARLLGQTFRSSDEAPKPTPSPRPQSAKRLEFILMPAKRQLSEDEITTQGVRAPEPCLSLSTADKQTAWNDPFPLPILKEKRWLQPCSTQSDLVPINISGQQFDRHASFRHSLFNTETAVNPKSTLRRRRTIIGFSNFSQRDPGHSNSPAGSLACSATSDIRPGHSAPQVVQGRVAIGQEARFPSLTSPGLRHSSSKPTDPHQARSGPDPPGMESMAMMYNIPSSCNGPTESTFSASWKGDAFTYMTPSASSQGNQASEDGKNPSSGNSWVSLNTLPPLVSKEAATLFVTRENPAGYTGLPSYSEHPTQRRQIPERPPKIGLLAHGTPRLETGPGGNNRFRERSLSVPTDSGVTSVDYDEEQKAREACILPYASTSSEGSNSTDNIAALSTEQEVRHRRQRSKSISLKKAKKKPSPPMRSVSLLKDEPVLPPEGKLVLPKDQRPRSLCLSLEHQGHHSSHPDVQGHPPVPILKDPEGTQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREVTSPGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSTSVRVRPVVPERKSSLPPTSPMEKICKSRLSFDLPLSSSTTLDLSGMSISIRSKTKVSRHHSDTNFGAKLAQKTSPNQPIMPMVTQSDLRSVRLRSVSKSEPEDDIESPDYTEEPGAEEVFTLPERKVKPPIAEKPPLARRPPSLVHRPPSLPEEYPLTSPTKAMTPRSSVPHMKQLPQDSYTVLRKPKSPSFPSGRSPGESTAPSTLIFTPLASSSGAFFSGTQQPPQASVEDGGPKVRALPERISLQSQEEAEKKISKIPPPVPKKPSVLYLPLTSPVAQMDACMAEPRLPFSPIITLEKDAKCPSTGDDLKSPSKGVTSALHVDSEKEAISPGRSVEPSTEEKSLISDKTAEWISEEDDDVFVASRTTEDLFTVIHRSKRKLLGWKETGEGFTGSRASSHSPVKNTADSPTSESAAATGPSGSACLDAGRNDDFKALLQKKGSKATPRTRASAAELLKTTNPLARRIITQFSKDCEATDNTST", "length": 1224, "header": "tr|A0A8C2MHM0-1|A0A8C2MHM0_CRIGR Isoform 1 of NHS-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nhsl2 PE=4 SV=1 CANONICAL=A0A8C2MHM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GL73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL73/entry", "sequence": { "sequence": "MPFYRRTVEPKRLCPRNPPQPLAELSDVSHLASLTLLRQLADLCGHSLALLEDLEEHLLALGRRTDNLYRRTMRLRRRLPCRLLGPEDDEELLGHSNSPAGSLACSATSDIRPGHSAPQVVQGRVAIGQEARFPSLTSPGLRHSSSKPTDPHQARSGPDPPGMESMAMMYNIPSSCNGPTESTFSASWKGDAFTYMTPSASSQGNQASEDGKNPSSGNSWVSLNTLPPLVSKEAATLFVTRENPAGYTGLPSYSEHPTQRRQIPERPPKIGLLAHGTPRLETGPGGNNRFRERSLSVPTDSGVTSVDYDEEQKAREACILPYASTSSEGSNSTDNIAALSTEQEVRHRRQRSKSISLKKAKKKPSPPMRSVSLLKDEPVLPPEGKLVLPKDQRPRSLCLSLEHQGHHSSHPDVQGHPPVPILKDPEGTQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREVTSPGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSTSVRVRPVVPERKSSLPPTSPMEKICKSRLSFDLPLSSSTTLDLSGMSISIRSKTKVSRHHSDTNFGAKLAQKTSPNQPIMPMVTQSDLRSVRLRSVSKSEPEDDIESPDYTEEPGAEEVFTLPERKVKPPIAEKPPLARRPPSLVHRPPSLPEEYPLTSPTKAMTPRSSVPHMKQLPQDSYTVLRKPKSPSFPSGRSPGESTAPSTLIFTPLASSSGAFFSGTQQPPQASVEDGGPKVRALPERISLQSQEEAEKKISKIPPPVPKKPSVLYLPLTSPVAQMDACMAEPRLPFSPIITLEKDAKCPSTGDDLKSPSKGVTSALHVDSEKEAISPGRSVEPSTEEKSLISDKTAEWISEEDDDVFVASRTTEDLFTVIHRSKRKLLGWKETGEGFTGSRASSHSPVKNTADSPTSESAAATGPSGSACLDAGRNDDFKALLQKKGSKATPRTRASAAELLKTTNPLARRIITQFSKDCEATDNTST", "length": 1021, "header": "tr|A0A9J7GL73-1|A0A9J7GL73_CRIGR Computationally mapped isoform of NHS-like protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Nhsl2 PE=4 SV=1 CANONICAL=A0A8C2MHM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Y5/entry", "sequence": { "sequence": "MPFYRRTVEPKRLCPRNPPQPLAELSDVSHLASLTLLRQLADLCGHSLALLEDLEEHLLALGRRTDNLYRRTMRLRRRLPCRLLGPEDDEELLDTCHWVNRIRSQRTRELVDAAKTGQQFDRHASFRHSLFNTETAVNPKSTLRRRRTIIGFSNFSQRDPGHSNSPAGSLACSATSDIRPGHSAPQVVQGRVAIGQEARFPSLTSPGLRHSSSKPTDPHQARSGPDPPGMESMAMMYNIPSSCNGPTESTFSASWKGDAFTYMTPSASSQGNQASEDGKNPSSGNSWVSLNTLPPLVSKEAATLFVTRENPAGYTGLPSYSEHPTQRRQIPERPPKIGLLAHGTPRLETGPGGNNRFRERSLSVPTDSGVTSVDYDEEQKAREACILPYASTSSEGSNSTDNIAALSTEQEVRHRRQRSKSISLKKAKKKPSPPMRSVSLLKDEPVLPPEGKLVLPKDQRPRSLCLSLEHQGHHSSHPDVQGHPPVPILKDPEGTQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREVTSPGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSTSVRVRPVVPERKSSLPPTSPMEKICKSRLSFDLPLSSSTTLDLSGMSISIRSKTKVSRHHSDTNFGAKLAQKTSPNQPIMPMVTQSDLRSVRLRSVSKSEPEDDIESPDYTEEPGAEEVFTLPERKVKPPIAEKPPLARRPPSLVHRPPSLPEEYPLTSPTKAMTPRSSVPHMKQLPQDSYTVLRKPKSPSFPSGRSPGESTAPSTLIFTPLASSSGAFFSGTQQPPQASVEDGGPKVRALPERISLQSQEEAEKKISKIPPPVPKKPSVLYLPLTSPVAQMDACMAEPRLPFSPIITLEKDAKCPSTGDDLKSPSKGVTSALHVDSEKEAISPGRSVEPSTEEKSLISDKTAEWISEEDDDVFVASRTTEDLFTVIHRSKRKLLGWKETGEGFTGSRASSHSPVKNTADSPTSESAAATGPSGSACLDAGRNDDFKALLQKKGSKATPRTRASAAELLKTTNPLARRIITQFSKDCEATDNTST", "length": 1088, "header": "tr|A0A9J7H7Y5-1|A0A9J7H7Y5_CRIGR Computationally mapped isoform of NHS-like protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nhsl2 PE=4 SV=1 CANONICAL=A0A8C2MHM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8X3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X3/entry", "sequence": { "sequence": "MPFYRRTVEPKRLCPRNPPQPLAELSDVSHLASLTLLRQLADLCGHSLALLEDLEEHLLALGRRTDNLYRRTMRLRRRLPCRLLGPEDDEELLDTCHWVNRIRSQRTRELVDAAKTGHSNSPAGSLACSATSDIRPGHSAPQVVQGRVAIGQEARFPSLTSPGLRHSSSKPTDPHQARSGPDPPGMESMAMMYNIPSSCNGPTESTFSASWKGDAFTYMTPSASSQGNQASEDGKNPSSGNSWVSLNTLPPLVSKEAATLFVTRENPAGYTGLPSYSEHPTQRRQIPERPPKIGLLAHGTPRLETGPGGNNRFRERSLSVPTDSGVTSVDYDEEQKAREACILPYASTSSEGSNSTDNIAALSTEQEVRHRRQRSKSISLKKAKKKPSPPMRSVSLLKDEPVLPPEGKLVLPKDQRPRSLCLSLEHQGHHSSHPDVQGHPPVPILKDPEGTQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREVTSPGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSTSVRVRPVVPERKSSLPPTSPMEKICKSRLSFDLPLSSSTTLDLSGMSISIRSKTKVSRHHSDTNFGAKLAQKTSPNQPIMPMVTQSDLRSVRLRSVSKSEPEDDIESPDYTEEPGAEEVFTLPERKVKPPIAEKPPLARRPPSLVHRPPSLPEEYPLTSPTKAMTPRSSVPHMKQLPQDSYTVLRKPKSPSFPSGRSPGESTAPSTLIFTPLASSSGAFFSGTQQPPQASVEDGGPKVRALPERISLQSQEEAEKKISKIPPPVPKKPSVLYLPLTSPVAQMDACMAEPRLPFSPIITLEKDAKCPSTGDDLKSPSKGVTSALHVDSEKEAISPGRSVEPSTEEKSLISDKTAEWISEEDDDVFVASRTTEDLFTVIHRSKRKLLGWKETGEGFTGSRASSHSPVKNTADSPTSESAAATGPSGSACLDAGRNDDFKALLQKKGSKATPRTRASAAELLKTTNPLARRIITQFSKDCEATDNTST", "length": 1044, "header": "tr|A0A9J7H8X3-1|A0A9J7H8X3_CRIGR Computationally mapped isoform of NHS-like protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Nhsl2 PE=4 SV=1 CANONICAL=A0A8C2MHM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KA80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA80/entry", "sequence": { "sequence": "MPFYRRTVEPKRLCPRNPPQPLAELSDVSHLASLTLLRQLADLCGHSLALLEDLEEHLLALGRRTDNLYRRTMRLRRRLPCRLLGPEDDEELLGQQFDRHASFRHSLFNTETAVNPKSTLRRRRTIIGFSNFSQRDPGHSNSPAGSLACSATSDIRPGHSAPQVVQGRVAIGQEARFPSLTSPGLRHSSSKPTDPHQARSGPDPPGMESMAMMYNIPSSCNGPTESTFSASWKGDAFTYMTPSASSQGNQASEDGKNPSSGNSWVSLNTLPPLVSKEAATLFVTRENPAGYTGLPSYSEHPTQRRQIPERPPKIGLLAHGTPRLETGPGGNNRFRERSLSVPTDSGVTSVDYDEEQKAREACILPYASTSSEGSNSTDNIAALSTEQEVRHRRQRSKSISLKKAKKKPSPPMRSVSLLKDEPVLPPEGKLVLPKDQRPRSLCLSLEHQGHHSSHPDVQGHPPVPILKDPEGTQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREVTSPGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSTSVRVRPVVPERKSSLPPTSPMEKICKSRLSFDLPLSSSTTLDLSGMSISIRSKTKVSRHHSDTNFGAKLAQKTSPNQPIMPMVTQSDLRSVRLRSVSKSEPEDDIESPDYTEEPGAEEVFTLPERKVKPPIAEKPPLARRPPSLVHRPPSLPEEYPLTSPTKAMTPRSSVPHMKQLPQDSYTVLRKPKSPSFPSGRSPGESTAPSTLIFTPLASSSGAFFSGTQQPPQASVEDGGPKVRALPERISLQSQEEAEKKISKIPPPVPKKPSVLYLPLTSPVAQMDACMAEPRLPFSPIITLEKDAKCPSTGDDLKSPSKGVTSALHVDSEKEAISPGRSVEPSTEEKSLISDKTAEWISEEDDDVFVASRTTEDLFTVIHRSKRKLLGWKETGEGFTGSRASSHSPVKNTADSPTSESAAATGPSGSACLDAGRNDDFKALLQKKGSKATPRTRASAAELLKTTNPLARRIITQFSKDCEATDNTST", "length": 1065, "header": "tr|A0A9J7KA80-1|A0A9J7KA80_CRIGR Computationally mapped isoform of NHS-like protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Nhsl2 PE=4 SV=1 CANONICAL=A0A8C2MHM0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 172, "start_aa": "Thr", "end_pos": 172, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr172", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 383, "start_aa": "Thr", "end_pos": 383, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr383", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 722, "start_aa": "Thr", "end_pos": 722, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr722", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 724, "start_aa": "Thr", "end_pos": 724, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr724", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHM0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHM0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758299", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758299", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHM0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1221, "end_pos": 1223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 172, 383, 722, 724 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 1221, "end_pos": 1223 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 290, "end_pos": 292 }, { "start_pos": 534, "end_pos": 536 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MHN7-1", "uniprot_ac": "A0A8C2MHN7", "uniprot_id": "A0A8C2MHN7_CRIGR", "mass": { "chemical_mass": 28319.0, "monoisotopic_mass": 28319.0 }, "refseq": { "ac": "XP_027283357", "name": "keratinocyte-associated transmembrane protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283357" }, "gene_names": [ { "name": "CUNH5orf15", "type": "recommended", "evidence": [ { "id": "A0A8C2MHN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7" } ] }, { "name": "CUNH5orf15", "type": "synonym", "evidence": [ { "id": "XP_027283357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283357" } ] } ], "protein_names": [ { "name": "Keratinocyte-associated transmembrane protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MHN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7/entry#names_and_taxonomy" } ] }, { "name": "keratinocyte-associated transmembrane protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027283357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283357" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283357" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHN7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH5orf15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7", "locus": {} } ], "crossref": [ { "id": "100765503", "url": "https://www.ncbi.nlm.nih.gov/gene/100765503", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765503", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765503", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MHN7", "url": "https://www.orthodb.org/?gene=A0A8C2MHN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16502", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16502", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16502:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16502:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283357", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHN7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAALGRMSGAAREKLLPGPGARGLGALARSLVLALLLAPVLCSDTPEHTSHNSTVSPLAALASGNNTEPSISQISTTVPSPASTEKNGGTSATPTPSVAPVSQDEADGNEDPSMEEEDLLALNSSPSTAKDTLDNGDYGEPDYDWTTNPRDEEPDDNINIEIDRENRRFRGFEDSVKVVKLQPPNREDSHFFFHLLIFAFCTAVVYVTYHNKRKIFLLVQSRKWRDGLCSKTVEYHRLDQNVNEAMPSLKITNDYIF", "length": 259, "header": "tr|A0A8C2MHN7-1|A0A8C2MHN7_CRIGR Isoform 1 of Keratinocyte-associated transmembrane protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH5orf15 PE=4 SV=1 CANONICAL=A0A8C2MHN7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7/entry", "sequence": { "sequence": "MAAAALGRMSGAAREKLLPGPGARGLGALARSLVLALLLAPVLCSDTPEHTSHNSTVSPLAALASGNNTEPSISQISTTVPSPASTEKNGGTSATPTPSVAPVSQDEADGNEDPSMEEEDLLALNSSPSTAKDTLDNGDYGEPDYDWTTNPRDEEPDDNINIEIDRENRRFRGFEDSVKVVKLQPPNREDSHFFFHLLIFAFCTAVVYVTYHNKRKIFLLVQSRKWRDGLCSKTVEYHRLDQNVNEAMPSLKITNDYIF", "length": 259, "header": "tr|A0A8C2MHN7-1|A0A8C2MHN7_CRIGR Isoform 1 of Keratinocyte-associated transmembrane protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH5orf15 PE=4 SV=1 CANONICAL=A0A8C2MHN7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 97, "start_aa": "Thr", "end_pos": 97, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr97", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHN7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHN7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHN7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765503", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765503", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 97 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 54, "end_pos": 56 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MHP4-1", "uniprot_ac": "A0A8C2MHP4", "uniprot_id": "A0A8C2MHP4_CRIGR", "mass": { "chemical_mass": 171409.0, "monoisotopic_mass": 171409.0 }, "refseq": { "ac": "XP_016827945", "name": "centrosomal protein of 170 kDa protein B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016827945" }, "gene_names": [ { "name": "Cep170b", "type": "recommended", "evidence": [ { "id": "A0A8C2MHP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4" } ] }, { "name": "Cep170b", "type": "synonym", "evidence": [ { "id": "XP_016827945", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016827945" } ] } ], "protein_names": [ { "name": "Centrosomal protein of 170 kDa protein B isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MHP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 170 kDa protein B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016827945", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016827945" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613702.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016827945", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016827945" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHP4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cep170b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4", "locus": {} } ], "crossref": [ { "id": "cd22725", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22725", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769745", "url": "https://www.ncbi.nlm.nih.gov/gene/100769745", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051176", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051176", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769745", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769745", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CAGRKPT", "url": "https://omabrowser.org/oma/group/CAGRKPT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MHP4", "url": "https://www.orthodb.org/?gene=A0A8C2MHP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FZX9", "url": "https://www.orthodb.org/?gene=A0A9J7FZX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15715", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15715", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15715:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15715:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00498", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00498", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15308", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15308", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016827945", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016827945", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHP4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G485", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G485", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G485-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G485-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVTSWFLVSSSGTRHRLPRELIFVGRDECELMLQSRSVDKQHAVINYDQDRDEHWVKDLGSLNGTFVNDVRIPDQKYVTLRLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKASAPKRSEALPEHTPYCESSQPRPEKGDRRHGAEAVAYRTPLYGQPSWWGEDDSVTPPEDRHQEEPYPERPKDPAHQDGELDGCRAPAEPPDYSFRREPSYFEIPTKEAPQPPLLPEVPTQEVPTKDQEASGGGTPPVVQSHASFTIEFDDCSPGKVKIKDHITKFSLRQRRPPSKEATPVEMVSAETKVADWLVQNDPSLLRRDGPGDDRQSTKSDLPIHTRTLKGHRHEDGTQSDSEDPLAKAASVSGAPTEASGEQVRLQRQIKRDPQELLHNQQAFVIEFFDEDTPRKKRSQSFTHTPPVDPKADKRRGTGTADRERPGVTVRAAGSSSGPQRASSLKREKTEERLGNTSPIPRASTRPFGSVGRRSRLAQDFMAQCMRDSSPATRPGPEKTPPVLPAPLTPRGASPVTPSTTPPPPTDPQLTKARRQEEDDSLSDAGTYTIETEAQDREVEEARKMIDQVFGVFESPELSRVSSATFRPVIRGDKDESSDGGMAQRMALLQEFASRAPGMAPQMEQQSLLVPGSPGGQKWVSRWASLADSYSDTGLAEDGPGRRTGEPEGALPVRTRRLLPQLPSDRADSPAGLEAARRSGPGPPELGNEQASHLIGQEDLDPDSLSDASGSDGGRGPEPGPERQEELAWAKGRRSPRAPGEPAPTSFFIGDQNGEATFPKKSFVAPGEVDGPGRVVQTSPSARDSLYVSANGRMMIQLRSGRSPEPDPAPPKEALAFARQESFTKEPASGPPAPGKLPHISNHPLLQDLAAARASRMDFHTQDTHLILKETETALAALEARLRSKSADEHEGGSTPRPPEDSLSGDSDVDTASTISLLSGKNGPSPTTPQTPGPQKEILLSPPAAPDPGGTTQGSARDRLSEKQHRPPGPADLGHGEPSRRLAMRRGHGSRGSLDWPEEERGSGPAHLPSSNHETPEATGIGRQGPRRKPVAPPPSPAAREEPSRSSSTAQKVQQALTRSNSLSTPRPTRASRLRRARLGDASDTEAVDGERGTAANPEPANRSAPEQAKKLTRLDILAMPRKRAGSFTGPSDSETAPARTGFSGRSAELYSTSRKPTIAEARAAARKTAAPAANTGPRQPFSRARPGSARYSSSTRRRQQGSDYTSTSEEEYGSHHSSPKHTRSHASTATQTPRASSSTRVRSQATGPRDTDDDEEEPDPYGFIVQTAEIAEIARLSQTLVKDVAILAREIHDVAGDGDTLGSPGPTRSPSLGNVPSTPASTISAREELVQRIPEASLNFQKVPPGSMNSHNLDQNMNDSCEDALANKTRPRNREEVIFDNLMLNPVSQLSHAIRENTEHLAEKMKILFQNTGRAWEDLEARINAENEVPILKTSNKEISSILKELRRVQKQLEVINAIVDPSVNLDLLMGNRTPAGSIQQGLGKARPAAQSSTSASVDTLLPALPLRSFPQRANCGPPGLPEPAFLPDAERFLI", "length": 1576, "header": "tr|A0A8C2MHP4-1|A0A8C2MHP4_CRIGR Isoform 1 of Centrosomal protein of 170 kDa protein B isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep170b PE=3 SV=1 CANONICAL=A0A8C2MHP4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4/entry", "sequence": { "sequence": "MSVTSWFLVSSSGTRHRLPRELIFVGRDECELMLQSRSVDKQHAVINYDQDRDEHWVKDLGSLNGTFVNDVRIPDQKYVTLRLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKASAPKRSEALPEHTPYCESSQPRPEKGDRRHGAEAVAYRTPLYGQPSWWGEDDSVTPPEDRHQEEPYPERPKDPAHQDGELDGCRAPAEPPDYSFRREPSYFEIPTKEAPQPPLLPEVPTQEVPTKDQEASGGGTPPVVQSHASFTIEFDDCSPGKVKIKDHITKFSLRQRRPPSKEATPVEMVSAETKVADWLVQNDPSLLRRDGPGDDRQSTKSDLPIHTRTLKGHRHEDGTQSDSEDPLAKAASVSGAPTEASGEQVRLQRQIKRDPQELLHNQQAFVIEFFDEDTPRKKRSQSFTHTPPVDPKADKRRGTGTADRERPGVTVRAAGSSSGPQRASSLKREKTEERLGNTSPIPRASTRPFGSVGRRSRLAQDFMAQCMRDSSPATRPGPEKTPPVLPAPLTPRGASPVTPSTTPPPPTDPQLTKARRQEEDDSLSDAGTYTIETEAQDREVEEARKMIDQVFGVFESPELSRVSSATFRPVIRGDKDESSDGGMAQRMALLQEFASRAPGMAPQMEQQSLLVPGSPGGQKWVSRWASLADSYSDTGLAEDGPGRRTGEPEGALPVRTRRLLPQLPSDRADSPAGLEAARRSGPGPPELGNEQASHLIGQEDLDPDSLSDASGSDGGRGPEPGPERQEELAWAKGRRSPRAPGEPAPTSFFIGDQNGEATFPKKSFVAPGEVDGPGRVVQTSPSARDSLYVSANGRMMIQLRSGRSPEPDPAPPKEALAFARQESFTKEPASGPPAPGKLPHISNHPLLQDLAAARASRMDFHTQDTHLILKETETALAALEARLRSKSADEHEGGSTPRPPEDSLSGDSDVDTASTISLLSGKNGPSPTTPQTPGPQKEILLSPPAAPDPGGTTQGSARDRLSEKQHRPPGPADLGHGEPSRRLAMRRGHGSRGSLDWPEEERGSGPAHLPSSNHETPEATGIGRQGPRRKPVAPPPSPAAREEPSRSSSTAQKVQQALTRSNSLSTPRPTRASRLRRARLGDASDTEAVDGERGTAANPEPANRSAPEQAKKLTRLDILAMPRKRAGSFTGPSDSETAPARTGFSGRSAELYSTSRKPTIAEARAAARKTAAPAANTGPRQPFSRARPGSARYSSSTRRRQQGSDYTSTSEEEYGSHHSSPKHTRSHASTATQTPRASSSTRVRSQATGPRDTDDDEEEPDPYGFIVQTAEIAEIARLSQTLVKDVAILAREIHDVAGDGDTLGSPGPTRSPSLGNVPSTPASTISAREELVQRIPEASLNFQKVPPGSMNSHNLDQNMNDSCEDALANKTRPRNREEVIFDNLMLNPVSQLSHAIRENTEHLAEKMKILFQNTGRAWEDLEARINAENEVPILKTSNKEISSILKELRRVQKQLEVINAIVDPSVNLDLLMGNRTPAGSIQQGLGKARPAAQSSTSASVDTLLPALPLRSFPQRANCGPPGLPEPAFLPDAERFLI", "length": 1576, "header": "tr|A0A8C2MHP4-1|A0A8C2MHP4_CRIGR Isoform 1 of Centrosomal protein of 170 kDa protein B isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep170b PE=3 SV=1 CANONICAL=A0A8C2MHP4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZX9/entry", "sequence": { "sequence": "MSVTSWFLVSSSGTRHRLPRELIFVGRDECELMLQSRSVDKQHAVINYDQDRDEHWVKDLGSLNGTFVNDVRIPDQKYVTLRLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKASAPKRSEALPEHTPYCESSQPRPEKGDRRHGAEAVAYRTPLYGQPSWWGEDDSVTPPEDRHQEEPYPERPKDPAHQDGELDGCRAPAEPPDYSFRREPSYFEIPTKEAPQPPLLPEVPTQEVPTKDQEASGGGTPPVVQSHASFTIEFDDCSPGKVKIKDHITKFSLRQRRPPSKEATPVEMVSAETKVADWLVQNDPSLLRRDGPGDDRQSTKSDLPIHTRTLKGHRHEDGTQSDSEDPLAKAASVSGAPTEASGEQVRLQRQIKRDPQELLHNQQAFVIEFFDEDTPRKKRSQSFTHTPPVDPKADKRRGTGTADRERPGVTVRAAGSSSGPQRASSLKREKTEERLGNTSPIPRASTRPFGSVGRRSRLAQDFMAQCMRDSSPATRPGPEKTPPVLPAPLTPRGASPVTPSTTPPPPTDPQLTKARRQEEDDSLSDAGTYTIETEAQDREVEEARKMIDQVFGVFESPELSRVSSATFRPVIRGDKDESSDGGMAQRMALLQEFASRAPGMAPQMEQQSLLVPGSPGGQKWVSRWASLADSYSDTGLAEDGPGRRTGEPEGALPVRTRRLLPQLPSDRADSPAGLEAARRSGPGPPELGNEQASHLIGQEDLDPDSLSDASGSDGGRGPEPGPERQEELAWAKGRRSPRAPGEPAPTSFFIGDQNGEATFPKKSFVAPGEVDGPGRVVQTSPSARDSLYVSANGRMMIQLRSGRSPEPDPAPPKEALAFARQESFTKEPASGPPAPGKLPHISNHPLLQDLAAARASRMDFHTQDTHLILKETETALAALEARLRSKSADEHEGGSTPRPPEDSLSGDSDVDTASTISLLSGKNGPSPTTPQTPGPQKEILLSPPAAPDPGGTTQGSARDRLSEKQHRPPGPADLGHGEPSRRLAMRRGHGSRGSLDWPEEERGSGPAHLPSSNHETPEATGIGRQGPRRKPVAPPPSPAAREEPSRSSSTAQKVQQALTRSNSLSTPRPTRASRLRRARLGDASDTEAVDGERGTAANPEPANRSAPEQAKKLTRLDILAMPRKRAGSFTGPSDSETAPARTGFSGRSAELYSTSRKPTIAEARAAARKTAAPAANTGPRQPFSRARPGSARYSSTTQTPRASSSTRVRSQATGPRDTDDDEEEPDPYGFIVQTAEIAEIARLSQTLVKDVAILAREIHDVAGDGDTLGSPGPTRSPSLGNVPSTPASTISAREELVQRIPEASLNFQKVPPGSMNSHNLDQNMNDSCEDALANKTRPRNREEVIFDNLMLNPVSQLSHAIRENTEHLAEKMKILFQNTGRAWEDLEARINAENEVPILKTSNKEISSILKELRRVQKQLEVINAIVDPSVNLDLLMGNRTPAGSIQQGLGKARPAAQSSTSASVDTLLPALPLRSFPQRANCGPPGLPEPAFLPDAERFLI", "length": 1541, "header": "tr|A0A9J7FZX9-1|A0A9J7FZX9_CRIGR Computationally mapped isoform of Centrosomal protein of 170 kDa protein B isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep170b PE=3 SV=1 CANONICAL=A0A8C2MHP4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G485-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G485/entry", "sequence": { "sequence": "MSVTSWFLVSSSGTRHRLPRELIFVGRDECELMLQHEKYTSQLQVSVKASAPKRSEALPEHTPYCESSQPRPEKGDRRHGAEAVAYRTPLYGQPSWWGEDDSVTPPEDRHQEEPYPERPKDPAHQDGELDGCRAPAEPPDYSFRREPSYFEIPTKEAPQPPLLPEVPTQEVPTKDQEASGGGTPPVVQSHASFTIEFDDCSPGKVKIKDHITKFSLRQRRPPSKEATPVEMVSAETKVADWLVQNDPSLLRRDGPGDDRQSTKSDLPIHTRTLKGHRHEDGTQSDSEDPLAKAASVSGAPTEASGEQVRLQRQIKRDPQELLHNQQAFVIEFFDEDTPRKKRSQSFTHTPPVDPKADKRRGTGTADRERPGVTVRAAGSSSGPQRASSLKREKTEERLGNTSPIPRASTRPFGSVGRRSRLAQDFMAQCMRDSSPATRPGPEKTPPVLPAPLTPRGASPVTPSTTPPPPTDPQLTKARRQEEDDSLSDAGTYTIETEAQDREVEEARKMIDQVFGVFESPELSRVSSATFRPVIRGDKDESSDGGMAQRMALLQEFASRAPGMAPQMEQQSLLVPGSPGGQKWVSRWASLADSYSDTGLAEDGPGRRTGEPEGALPVRTRRLLPQLPSDRADSPAGLEAARRSGPGPPELGNEQASHLIGQEDLDPDSLSDASGSDGGRGPEPGPERQEELAWAKGRRSPRAPGEPAPTSFFIGDQNGEATFPKKSFVAPGEVDGPGRVVQTSPSARDSLYVSANGRMMIQLRSGRSPEPDPAPPKEALAFARQESFTKEPASGPPAPGKLPHISNHPLLQDLAAARASRMDFHTQDTHLILKETETALAALEARLRSKSADEHEGGSTPRPPEDSLSGDSDVDTASTISLLSGKNGPSPTTPQTPGPQKEILLSPPAAPDPGGTTQGSARDRLSEKQHRPPGPADLGHGEPSRRLAMRRGHGSRGSLDWPEEERGSGPAHLPSSNHETPEATGIGRQGPRRKPVAPPPSPAAREEPSRSSSTAQKVQQALTRSNSLSTPRPTRASRLRRARLGDASDTEAVDGERGTAANPEPANRSAPEQAKKLTRLDILAMPRKRAGSFTGPSDSETAPARTGFSGRSAELYSTSRKPTIAEARAAARKTAAPAANTGPRQPFSRARPGSARYSSSTRRRQQGSDYTSTSEEEYGSHHSSPKHTRSHASTATQTPRASSSTRVRSQATGPRDTDDDEEEPDPYGFIVQTAEIAEIARLSQTLVKDVAILAREIHDVAGDGDTLGSPGPTRSPSLGNVPSTPASTISAREELVQRIPEASLNFQKVPPGSMNSHNLDQNMNDSCEDALANKTRPRNREEVIFDNLMLNPVSQLSHAIRENTEHLAEKMKILFQNTGRAWEDLEARINAENEVPILKTSNKEISSILKELRRVQKQLEVINAIVDPSVNLDLLMGNRTPAGSIQQGLGKARPAAQSSTSASVDTLLPALPLRSFPQRANCGPPGLPEPAFLPDAERFLI", "length": 1500, "header": "tr|A0A9J7G485-1|A0A9J7G485_CRIGR Computationally mapped isoform of Centrosomal protein of 170 kDa protein B isoform X3 OS=Cricetulus griseus OX=10029 GN=Cep170b PE=3 SV=1 CANONICAL=A0A8C2MHP4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1348, "start_aa": "Thr", "end_pos": 1348, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1348", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1359, "start_aa": "Thr", "end_pos": 1359, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1359", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 259, "start_aa": "Thr", "end_pos": 259, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 537, "start_aa": "Thr", "end_pos": 537, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr537", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 546, "start_aa": "Thr", "end_pos": 546, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr546", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 967, "start_aa": "Thr", "end_pos": 967, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr967", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHP4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHP4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769745", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2B758-1", "protein_name": "Centrosomal protein of 170 kDa protein B isoform X1", "gene_name": "cep170bb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVTSWFLVSSSGTRHRLPREMIFVGREDCELMLQSRSVDKQHAVINYNPATDEHLVKDLGSLNGTFVNDLRIPDQTYITLKLSDIVRFGYDSHVYILERSQHKVPEEALKHEKYTSQLQMGIKCEEGKQQNVQEEKSKLERSDRKSLTESPVPRPTPLYGQPSWWGEEDSGNMENSEVRRSSDNHSDITKEIHTAEDDFNLQEIHDGQAKSTYLYNREPSYFEIPTKEFHVQHKSPTTDLIDIPTKDTNVSLISTPPVVQSHASFTIEFDDCMPGKIKIKDHVTKFSSRQRSKQQQPGNTLAATPTEVLSAESKVADWLVQSDVSMMCRRTPCEDVYSTKSDLAMHIRTLKGHHHDDGTQSDSEDPVMKGKCSKSHHSMQSVQSYHSTQSKTSEPSESLLSQQSVIPQKSHNPQTLPQHKHHQVKLDESEDRPIQEGSSPPRTEVEPSHTEPHTQQAFIIEFFDDNPRKKRSQSFTHNSVHADSYSALKAKLERRKGLAHGERPASVHGLVPPTQQITVPLKGASHGGSQRSSSLKREKTEDTGSSSSLLGSSSRSSPTITIKPFGSMGKNSKLAQEFTEEFSKDTGKIFLPPKSAPPVMMSPSHTPSSSLAETSGHVSVSYPSSPCQHSALPQSLLSASSPVSAPSHIPGRSPVFSASPVCSSVPQVSPQVVSCVDTKASRVTRTEEEDSLSDAGTYTIETESQDKEVEEARSMIDQVFGVLDAPEYSGQTLGVYRPVIDDGDNEQLFFSQSHSNAADVMSTSSLGHGRDQVISLQAHPGVVGPKWVSRWASLADPYSDPGATQGSVPVPPQSAERDDRVTLIIGQCLDISESEGSQSSRTRRLLPQVPPGEKLENTTPSILIRHETNLDHEPPEKGSRMPQQQDNTQRLRVQDDVDPDSLSDTSRSDDSSILDRSGRSQGKRGTTRHLPSENVNHSRELREMPQPTPKPTSFYIGSEDGLSKSDVSKSPVLSQPEKDSAFKIPPTTVLIRHLSGHESRRPVKPNSSAPDLQTHNKDVVPTKDTSTSFVRQESFTKDRPSDNIQVKKLPHISSHPALRSLDTEETLQDTFTFLKEVEKSPEEKLSGCSQRSKKGSSPAQEDSFSGDSDVDTASTVSMVSSKNAPVSSLKKHTSANDTGKEKSSSGLPAKHKARQPTARERLSEKRKSHASADNTSKAELSRRLQLRRSAGNRGSLDLSDNQHGQQLWPEAGASDHESSSRPNNRKKLTAPLQKEDPNKVTKGSHQVLTRSNSLSAPRPTRASMLRRARLGEASDNESAETDRASPSSEHSKTESKKLSRLDILAMPRKRTRSFTVPSDNESTSSKHGISNRTTEASSSARKGASSEVRHANSKGTAAAGKHSSRTHSTQVKHSSTAGSHRRQRDSDYSSTSEEEFETKTNCKQKRSHASASTQTQTPQKTAQMRLKCGSLETEEDETQNEHFQNWSTHSAEIARLSQDLAKDLAILAREIHDVAGDGDSQASSGIGATTSPVSMPNTPASTISTREERPYASLQSFLLPQLVQHIPEASLNYQKVPPGSTSPIDQDSNMNDHDSSRRRPWNREEVILDNLMLNPVSQLSQAIRENTEQLAEKMKVLFHNKTEVWEEIEAKINAENEVPIIKTSNKEISSILQELRRVQRQLEVINTIVEPGGILKMPPKVTSGGKIKSAPKEFTSSSSTNANASAKQGPRGSGGGRYV", "length": 1700 }, "evidence": [ { "id": "A0A8C2MHP4", "url": "https://omabrowser.org/oma/group/A0A8C2MHP4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D4A1G8-1", "protein_name": "Centrosomal protein 170B", "gene_name": "Cep170b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVTSWFLVSSSGTRHRLPRELIFVGRDDCELMLQSRSVDKQHAVINYDQDRDEHWVKDLGSLNGTFVNDVRIPDQKYITLKLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKVSAPKRSDTLPDHTPYCESSQPRPEKGDRRHGAEAVAYRTPLYGQPSWWGEDDSGAPSEDRHQQEPYPERPKDLTQQDSELDSCRAPAEPPDYSFRREPSYFEIPTKEAPQPPRLPEVPTQEMPTKDQEACTGGTAPVVQSHASFTIEFDDCSPGKVKIKDHITKFSLRQRRPPSKETTPVEMVSAETKVADWLVQNDPSLLRRDGPGDDRHSTKSDLPVHTRTLKGHKHEDGTQSDSEDPLAKTASVSGAPTEASGEQVRLQRQIRRDPQELLHNQQAFVIEFFDEDTPRKKRSQSFTHTPPADPKADKRRVTGAADRERPGVTVRTTGSSSGPQRASSLKREKTEERLGNTSPVPRASTRPFGSVGRRSRLAQDFMAQCMRDSSPATRPGPEKTPPVLPAPLTPRGASPVTPSSTPPPPTDPQLTKARRQEEDDSLSDAGTYTIETEAQDQEVEEARKMIDQVFGVFESPELSRVSSATFRPVIKGDKDECSDGGMAQRMALLQEFASRTPGMAAQMEQQSLLVPGSPGGQKWVSRWASLADSYTDAGLAEDGPGRRTGEPEGPLPVRTRRLLPQLPSDRADSPAGLEAARRNGPGPPELSGDPANCLIGQEDLDPDSLSDASGSDGGRGPEPGTERQEDLAWVRGRRSPRAPGELAPTSFFIGDQNGEATFPKKSFVAPGEADGPGRVVQTSPSARDSLYISSNGRMVIQLRSGRSPEPDPAPPKETLTFARQESFTKEPTSGPPAPGKLPHISSHPLLQDLAAARASRMDFHTQDTHLILKETETALAALEARLRSKSADECEGGSTPRPPEDSLSGDSDVDTASTISLLSGKNGPSPTTPQTPGPQKESLLSPPAVPDPGVMTPGSARERLSERQHRPPPADLGHGDPSRRLAMRRGHGSRGSLDWPEEERGSGLAHLPNSNHETPEATVSGRQGPRRKPVAPPPSPAAREEQSRSSTTAQKVQQVLTRSNSLSTPRPTRASRLRRARLGDASDTEAVDGERGTTANPEPVNRAAPEQAKKLTRLDILAMPRKRAGSFTGPSDSETTPARTGFSGRSAELYSTSRKPTIAEARAAAKKAAATAANPGPRQPFSRARPGSARYSSSTRRRQQGSDYTSTSEEEYGSHHSSPKHTRSHASTATQTPRGSSSVRARSQGPRDTDDDEEEPDPYGFIVQTAEIAEIARLSQTLVKDVAILAREIHDVAGDGDSLGSPGPTRSPSLGNVPNTPASTISAREELVQRIPEASLNFQKVPPGSMNSHNNLDQNMNDSPEDALANKTRPRNREEVIFDNLMLNPVSQLSHAIRENTEHLAEKMKILFQNTGRAWEDLEARINAENEVPILKTSNKEISSILKELRRVQKQLEVINAIVDPSMNLDLLMGNRAPAGSVQPGLGKARPAAQSSASPASVDTLLPAMPLRSFPQRANCGPPGLPEPAFLPDAERFLI", "length": 1575 }, "evidence": [ { "id": "A0A8C2MHP4", "url": "https://omabrowser.org/oma/group/A0A8C2MHP4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80U49-1", "protein_name": "Centrosomal protein of 170 kDa protein B", "gene_name": "Cep170b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVTSWFLVSSSGTRHRLPRELIFVGRDECELMLQSRSVDKQHAVINYDQDRDEHWVKDLGSLNGTFVNDVRIPDQKYITLKLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKVSAPKRGDALPDHTPYCESSQPRPEKGDRRHGAEAVAYRTPLYGQPSWWGEDDSGAPSEDRHQEEPYSERPKDLAQQNGELDSCRAPAEPPDYSFRREPSYFEIPTKETPQPPRLPEVPTQEVPTKDQEAGVGGTAPVVQSHASFTIEFDDCSPGKVKIKDHITKFSLRQRRAPSKETTPVETVSAETKVADWLVQNDPSLLRRDGPGDDRHSTKSDLPVHTRTLKGHKHEDGTQSDSEDPLAKTASVSGASAEASGEQVRLQRQIKRDPQELLHNQQAFVIEFFDGDTPRKKRSQSFTHTPPADPKADKRRGPGTSDRDRPGVSVRATGSSSGPQRASSLKREKTEERLGNTSPVPRASTRSFGSVGRRSRLAQDFMAQCMRDSSPATRPAPEKTPPVLPAPLTPRGASPVTPSTTPPPPTDPQLTKARKQEEDDSLSDAGTYTIETEAQDQEVEEARRMIDQVFGVFESPELSRVSSATFRPVIRGDKDESSDGGMAQRMALLQEFASRAPGMAPQMEQQSLLVPGSPGGQKWVSRWASLADSYSDAGLPEDGPGRRTGEPEGPLPVRTRRLLPQLPSGRADSPAGLEAARRNGPGPPELGSEPANCLIGQEDLDPDSLSDASGSDGGRGPEPGTERQEDLAWVRGRRSPRAPGELVPTSFFIGDQNGEATFPKKSFVGPGEVDGPGRVVQTSPSARDGLYVSSNGRMVIQLRSGRSPEPDPAPPKETLTFARQESFTKEPTSGPPAPGKLPHISSHPLLQDLAAARASRLDFHAQDTHLILKETETALAALEARLRSKSADECDGGSTPRPPEDSLSGDSDVDTASTISLLSGKNGPSPTTPQTPGPQKESPLSPPTVPDPGGATPGSARERMSERQHRPTPADLGPGDTSRRAAMRRGHGSRGSLDWPEEERGSGLAHLPSSNHETPEATLAGRQGPRRKPAAPPPSPAAREEQSRSSATAQKVQQALTRSNSLSTPRPTRASRLRRARLGDASDTEAVDGERGTAANPEPANRAAPEQAKKLTRLDILAMPRKRAGSFTGPSDSETAPARTGFSGRSAELYSTSRKPTIAEARAAAKKAAATAANTGPRQPFSRARPGSARYSSNTRRRQQGSDYTSTSEEEYGSHHSSPKHTRSHASTATQTPRGSSSTRARSQGPRDTDDDEEEPDPYGFIVQTAEIAEIARLSQTLVKDVAILAREIHDVAGDGDSLGSPGPTRSPSLGNVPNTPASTISAREELVQRIPEASLNFQKVPPGSMNSHNLDQNMNDSRDDALTNKTRPRNREEVIFDNLMLNPVSQLSHAIRENTEHLAEKMKVLFQNTGRAWEDLEARINSENEVPILKTSNKEISSILKELRRVQKQLEVINAIVDPSLNLDLLMGNRAPSGSGQPGLGKARPAAQSSTSPASVDTLLPALPLRSFPQRANCGPPGLPEPAFLPDAERFLI", "length": 1574 }, "evidence": [ { "id": "A0A8C2MHP4", "url": "https://omabrowser.org/oma/group/A0A8C2MHP4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1142, "end_pos": 1144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1399, "end_pos": 1401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1408, "end_pos": 1410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1513, "end_pos": 1515, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MHP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP4" }, { "id": "PS50006", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50006" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FHA", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 73, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 259, 537, 546, 967, 1348, 1359 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1142, "end_pos": 1144 }, { "start_pos": 1399, "end_pos": 1401 }, { "start_pos": 1408, "end_pos": 1410 }, { "start_pos": 1513, "end_pos": 1515 }, { "start_pos": 476, "end_pos": 478 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MHP5-1", "uniprot_ac": "A0A8C2MHP5", "uniprot_id": "A0A8C2MHP5_CRIGR", "mass": { "chemical_mass": 38527.0, "monoisotopic_mass": 38527.0 }, "refseq": { "ac": "XP_003497893", "name": "PI-PLC X domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497893" }, "gene_names": [ { "name": "Plcxd2", "type": "recommended", "evidence": [ { "id": "A0A8C2MHP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5" } ] }, { "name": "Plcxd2", "type": "synonym", "evidence": [ { "id": "XP_003497893", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497893" } ] } ], "protein_names": [ { "name": "PI-PLC X domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003497893", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497893" }, { "id": "A0A8C2MHP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613667.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497893", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497893" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHP5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plcxd2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5", "locus": {} } ], "crossref": [ { "id": "cd08616", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08616", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763459", "url": "https://www.ncbi.nlm.nih.gov/gene/100763459", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763459", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763459", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NHFYAME", "url": "https://omabrowser.org/oma/group/NHFYAME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MHP5", "url": "https://www.orthodb.org/?gene=A0A8C2MHP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JG93", "url": "https://www.orthodb.org/?gene=A0A9J7JG93", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JNM1", "url": "https://www.orthodb.org/?gene=A0A9J7JNM1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003497893", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497893", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHP5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG93-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKAASEVCNADWMASLPPHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLSQHPQEIIFLDFNHFYAMDEAHHKCLVLRIQEAFGNKLCPACSVESMTLQSLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVNKLIPFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLVDFATTVIELNDLLEDRALTKC", "length": 340, "header": "tr|A0A8C2MHP5-1|A0A8C2MHP5_CRIGR Isoform 1 of PI-PLC X domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plcxd2 PE=4 SV=1 CANONICAL=A0A8C2MHP5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5/entry", "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKAASEVCNADWMASLPPHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLSQHPQEIIFLDFNHFYAMDEAHHKCLVLRIQEAFGNKLCPACSVESMTLQSLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVNKLIPFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLVDFATTVIELNDLLEDRALTKC", "length": 340, "header": "tr|A0A8C2MHP5-1|A0A8C2MHP5_CRIGR Isoform 1 of PI-PLC X domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plcxd2 PE=4 SV=1 CANONICAL=A0A8C2MHP5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JG93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG93/entry", "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKAASEVCNADWMASLPPHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLSQHPQEIIFLDFNHFYAMDEAHHKCLVLRIQEAFGNKLCPACSVESMTLQSLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVNKLIPFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRACAKTILRTMNPCDPRISALKKQKQLDA", "length": 317, "header": "tr|A0A9J7JG93-1|A0A9J7JG93_CRIGR Computationally mapped isoform of PI-PLC X domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Plcxd2 PE=4 SV=1 CANONICAL=A0A8C2MHP5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM1/entry", "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKAASEVCNADWMASLPPHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLSQHPQEIIFLDFNHFYAMDEAHHKCLVLRIQEAFGNKLCPACSVESMTLQSLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVNKLIPFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRWP", "length": 291, "header": "tr|A0A9J7JNM1-1|A0A9J7JNM1_CRIGR Computationally mapped isoform of PI-PLC X domain-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Plcxd2 PE=4 SV=1 CANONICAL=A0A8C2MHP5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHP5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHP5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHP5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763459", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763459", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BSJ3-1", "protein_name": "Phosphatidylinositol specific phospholipase C X domain containing 2", "gene_name": "PLCXD2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLAVRKVRRKLRMGTICSPNPSGTKTSLEVCNADWMASLPPHLHNVPLSHLAIPGSHDSFSYWVDEKSPVGPDQTPAIKRLARISLVKKLMKKWSVTQNLTFREQLDAGIRYFDLRVSSKPGDADQEIYFIHGLFGIRVWDGLMEIDSFLTQHPQEIVFLDFNHFYAMDEAHHQRLILRIQEAFGNKLCSACSVESMTLQTLWEKRCQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVHKLILFLETTLSERAPRGSFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLVDFATTVIELNDLLQEDRALAKC", "length": 341 }, "evidence": [ { "id": "A0A8C2MHP5", "url": "https://omabrowser.org/oma/group/A0A8C2MHP5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "B2RXA1-1", "protein_name": "PI-PLC X domain-containing protein 2", "gene_name": "Plcxd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKTASEVCNADWMASLPAHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVIRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLTQHPQEIIFLDFNHFYAMDESHHKCLVLRIQEAFGNKLCPACSVESMTLRSLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVQKLILFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLIDFATTVIELNDLLEDRALTKC", "length": 340 }, "evidence": [ { "id": "A0A8C2MHP5", "url": "https://omabrowser.org/oma/group/A0A8C2MHP5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4A4P6-1", "protein_name": "Phosphatidylinositol-specific phospholipase C, X domain containing 2", "gene_name": "Plcxd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKTASEVCNADWMASLPPHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLTQHPQEIIFLDFNHFYAMDEAHHKCLVLRIQEAFGNKLCPACSVESMTLRTLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVQKLILFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLIDFATTVIELNDLLEDRALTKC", "length": 340 }, "evidence": [ { "id": "A0A8C2MHP5", "url": "https://omabrowser.org/oma/group/A0A8C2MHP5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1C7W9-1", "protein_name": "Phosphatidylinositol specific phospholipase C X domain containing 2", "gene_name": "PLCXD2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278152" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHR4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHR4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836417", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHR4", "locus": {} } ], "crossref": [ { "id": "113836417", "url": "https://www.ncbi.nlm.nih.gov/gene/113836417", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836417", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836417", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MHR4", "url": "https://www.orthodb.org/?gene=A0A8C2MHR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36288:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36288:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17669", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17669", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278152", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHR4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKGRRGSQNPKMSQRPAPPLYFPSLYDRGISSSPLSDFNIWKKLFVPLKAGGAPAGGVAGIAGVRPLPLAPPATVPPPPPGLGPPSERPCPPPWPSGLAPIPYEPLRFFYSPPPGPEMATSALVPGSTTPWLASASHPEELCELEIRIKELELLTITGDGFDSQRYKFLKALKDEKLQGLKTTRQPGKSASVS", "length": 194, "header": "tr|A0A8C2MHR4-1|A0A8C2MHR4_CRIGR Isoform 1 of Uncharacterized protein C11orf91 homolog OS=Cricetulus griseus OX=10029 GN=LOC113836417 PE=4 SV=1 CANONICAL=A0A8C2MHR4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHR4/entry", "sequence": { "sequence": "MPKGRRGSQNPKMSQRPAPPLYFPSLYDRGISSSPLSDFNIWKKLFVPLKAGGAPAGGVAGIAGVRPLPLAPPATVPPPPPGLGPPSERPCPPPWPSGLAPIPYEPLRFFYSPPPGPEMATSALVPGSTTPWLASASHPEELCELEIRIKELELLTITGDGFDSQRYKFLKALKDEKLQGLKTTRQPGKSASVS", "length": 194, "header": "tr|A0A8C2MHR4-1|A0A8C2MHR4_CRIGR Isoform 1 of Uncharacterized protein C11orf91 homolog OS=Cricetulus griseus OX=10029 GN=LOC113836417 PE=4 SV=1 CANONICAL=A0A8C2MHR4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A8C2MHT8/entry#names_and_taxonomy" } ] }, { "name": "protein SLFN14", "type": "synonym", "evidence": [ { "id": "XP_035304025", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304025" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304025", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304025" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slfn14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8", "locus": {} } ], "crossref": [ { "id": "100752549", "url": "https://www.ncbi.nlm.nih.gov/gene/100752549", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752549", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752549", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LHHGVLW", "url": "https://omabrowser.org/oma/group/LHHGVLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MHT8", "url": "https://www.orthodb.org/?gene=A0A8C2MHT8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12155:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12155:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304025", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304025", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPYAEITIHLGKVTLGEKNRKKMTNGCLKRHENSSIIQAVCALLNSGGGVVKAEIVDENYSYQCHGLGQDLETSFQKLLPSGSQKYLDCMQQNHDLLIFVKSWSPDASSLPLKICSLRSNLYQRDVTSAINLSARSALELLKEKESRAQRGVPRVHSQECLLRRSIQEEEDIKVCASEFFKKDKLNYKEKLNFTESTHVEFKRFTTKKIVPRIKETLAHYISAFANTQGGYIIIGVDDESKEVFGCKKEKVNPESLKTEIRNCIEKLPTYHFCREKPKVDFTTKIMKVYQKEALYGYVCVVQVEPFCCLVFADDPDSWIMKDSNVKRLVAQQWVDMMLDIQPDPSSLPTTDYSAHPISPALPAPRRPAYLTKVLGYKGTLQRRLFPVTQASLQFQPESLCKKLFSDHNGLEGLLKAQIHPCSHGIVIVSRSWAGDIGLTKEQKVLCDALLVAVNSPLILYTILPDQSWNGGSNYTHNTALQLKQQLQTLGGYSGKVCVIPRQIYLTRRGPRPEQSLVCYPRSYTLSSKTEVEGVLQALVGVSVCSRSVLSDQLGCEFFKLRVEEQCNSLSQSLQETRELFIHCFPGTRKTALAIKITEKIKDVFHCKPKEILYVCGNDSLRDFVIQQVTCQIVTQRTFMREEFPKIKHIVMDETEDFCRRYDDWYMKAKSITHPKVKGAASENLHHGILWLFLDPFQTHHADVSGLPALSAQFPRKVITNEIHCAVEIANVMKEEMKRIQESPPPNISPDILAMFQEAPYEEAMCAQALPGVCEIKANLTLEQIANYVAEKCHSLFHEGYLPKDIAILYRREDRRQYKDVLLRTMVQRTTEVAFSSAADVCSDGIVLDSVQQFSGMVRNIVFGLSPECMQSEGAHKLCFASRAIKHLYLLYSRKTAS", "length": 897, "header": "tr|A0A8C2MHT8-1|A0A8C2MHT8_CRIGR Isoform 1 of Protein SLFN14 OS=Cricetulus griseus OX=10029 GN=Slfn14 PE=4 SV=1 CANONICAL=A0A8C2MHT8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8/entry", "sequence": { "sequence": "MPYAEITIHLGKVTLGEKNRKKMTNGCLKRHENSSIIQAVCALLNSGGGVVKAEIVDENYSYQCHGLGQDLETSFQKLLPSGSQKYLDCMQQNHDLLIFVKSWSPDASSLPLKICSLRSNLYQRDVTSAINLSARSALELLKEKESRAQRGVPRVHSQECLLRRSIQEEEDIKVCASEFFKKDKLNYKEKLNFTESTHVEFKRFTTKKIVPRIKETLAHYISAFANTQGGYIIIGVDDESKEVFGCKKEKVNPESLKTEIRNCIEKLPTYHFCREKPKVDFTTKIMKVYQKEALYGYVCVVQVEPFCCLVFADDPDSWIMKDSNVKRLVAQQWVDMMLDIQPDPSSLPTTDYSAHPISPALPAPRRPAYLTKVLGYKGTLQRRLFPVTQASLQFQPESLCKKLFSDHNGLEGLLKAQIHPCSHGIVIVSRSWAGDIGLTKEQKVLCDALLVAVNSPLILYTILPDQSWNGGSNYTHNTALQLKQQLQTLGGYSGKVCVIPRQIYLTRRGPRPEQSLVCYPRSYTLSSKTEVEGVLQALVGVSVCSRSVLSDQLGCEFFKLRVEEQCNSLSQSLQETRELFIHCFPGTRKTALAIKITEKIKDVFHCKPKEILYVCGNDSLRDFVIQQVTCQIVTQRTFMREEFPKIKHIVMDETEDFCRRYDDWYMKAKSITHPKVKGAASENLHHGILWLFLDPFQTHHADVSGLPALSAQFPRKVITNEIHCAVEIANVMKEEMKRIQESPPPNISPDILAMFQEAPYEEAMCAQALPGVCEIKANLTLEQIANYVAEKCHSLFHEGYLPKDIAILYRREDRRQYKDVLLRTMVQRTTEVAFSSAADVCSDGIVLDSVQQFSGMVRNIVFGLSPECMQSEGAHKLCFASRAIKHLYLLYSRKTAS", "length": 897, "header": "tr|A0A8C2MHT8-1|A0A8C2MHT8_CRIGR Isoform 1 of Protein SLFN14 OS=Cricetulus griseus OX=10029 GN=Slfn14 PE=4 SV=1 CANONICAL=A0A8C2MHT8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752549", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752549", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A096MK07-1", "protein_name": "Uncharacterized protein", "gene_name": "AC118772.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLAKDLLHPSPEEGKRKPKKKRLVQSPNSYFLDVKCTGCYKITTDFSHAQTVVLQISQGSRARNRGQTSHPEPDEELKHPEGTRAPVNSRDVFLLSLSVQKMPYAEITVNLGKVTLGEENRKEMTNSCLKRHENSSIVQAVCALLNSGGGVIKAKIDDKGYSYRCHGLGQDLETSFQKLLPSGSQKHLDYMQQDHDFLIFVKSWSPDASSLPLKICSLRSNIYQRDVTSAINLCASSALELLREKESRAQRGIPKLHSQDHILNRTIQEEEDIKMCALEFFKKDKLNYKEKLSFTESTHVEFKRFTTKKIVPRIKETLAHYVSAFANTQGGYIIIGVDDKSKEVFGCMKEKVNPDSLKTEIKNCIEKLPTYHFCREKPRVNFTTKILKVYQREALYGFVCVVQVEPFCCVVFAEDPDSWIMENNIVTRLKAQQWVEMMLAIQSDPSGFPTTADSAHPMSPALSAPGRPAYLTKVLEHKETLQRRFFPEKLFSDHEGLEDLLKTQTHPCSHGIVIFSRSWAGDIGLTREEKVLCDALLVAVGSPLVLYTVLTDPSWLGGSDYTQNTALQLKRRLQTLGGYRGKVCVIPRVICLPGRGSRPDPSPVYPRAYKLSSSAEVEDLLQSLVLVSLCSRSVLSDQLGCEFFKLCIEEEARALSRNLRETRELFIHCLPGTRKTALAIKMVEKIKDMFHCKPKEILYVCENDSLRDFVMQQVTCRAVTRRAFMREEFPKVKHIVLDETENFCSRHGDWYEKAKSTTHPKASGERLHHGILWLFLDPFQTRHPGASGLPAPSAQFPRKMITSEIHCAVEIAKVMKDEMKRIQENPPSNGSPDTLAMFQEVPYEEAMCAQALPGVCEIKANLTPGQIASYVAEKCHSLFHEGYRPQDIAILYRRWEDRGQYKEALLRAMARGTMEVSFNSAADICADGVIFDSVEQFSGMVRNIVFGLSTESVHSEGVHKLCFASRAVKHLYLLEAEIVLSPHQRGVVDGLSQRSTTVQNTGNKELEVPPPPDTAAIQPLNRRLHGKGVGQETLLWNTSRRPSNSGLCCRIIITVLLDKQTEDLGASRKQTTRLDLRTSCLPCRLPEISTQASPASCNPKRTQPLPVNRRMGENCSVLNRTVEGDKGTKGSRSEVWAVYDEETLALCRLSALKAWDKVAESEKKLEPFTQVIQGPKETFPDFLQRLTSAVERSVSDTAARKATVESLAFENVNTECREGIRPLRARSASVDEWIRQTADIGSSRLI", "length": 1247 }, "evidence": [ { "id": "A0A8C2MHT8", "url": "https://omabrowser.org/oma/group/A0A8C2MHT8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3MZA6-1", "protein_name": "Schlafen family member 14", "gene_name": "SLFN14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSLKMETEMLYPEITVDVGRVTFGEENRKRMTNSYLKRTENSRIIQATCALLNSGGGVIKAEIEDKTYSYRCHGLGHDLETSFQKLFPSGSQKYLDYMQQGHNLMIFVKSWCPDIFSLRICSLRSNLYQRAVTSTINLSAHSALELLREKQSRTQRGRSTMQELHSQKALDRYMQEEEDMRMSASEFVKKDKLMYKEKLNFTESTHVEFKRFTTKKIIPRTKEMLPHYVSAFANTHGGYLIIGVDDKSKEVFGCQGEKVNPDLLKREIENCIEKLPTFHFCCEKPKVNFTTKILNVYQRDVLYGHVCVVHVEPFCCVVFTEAPDSWIIRDNSVTRLSAEQWVTMMLDIQSVPSNLEADHSLHLISSASSPLRSLSYPIKVLEFKEALQQHLFPVTPEKIQFKPESLCKKLFSDHKGLEELMKTQIYPCSQGFVIVSRSWASDVGLRKEQYVLCDALLIAVNSSPVLYTILTDSTWTGGLVYAQNTARQLKQKLGTVGGYTGKVCVIPRLVHLPGAQRKPSEITLRYPQPYRLADEDEMEKLLQALITVSLCSRSLLSDQLGCEFSNLLVAEQCELLSQSLQETRELFVHCFPGTRKTALAIKIMEKIKDLFHCKSKEILYVCESDALKDFVTQQTTCRAVTRKTFMGGEFPKVKHIVMDETEHFCSKYGDWYMKAKSITHPKVRGAGSGNPHHGILWLFLDPFQVHHGGGNGLPPPSAQFPRKTITNGIHCALEIAMLMKEEMKRLKENPHPSVSPDTLAAFREASYEEAMRAQALPGVCEIETNLTTEEIARHVAERCHHLFQCGYLPRDIAILCRRAEDRGRYELALLRAMELFETCGATKVVFSQASGVLDGHIVLDSIQQFSGLERNIVFGLSPEYALSEEVHKLCFASKAIKHLYLLYEKKATF", "length": 910 }, "evidence": [ { "id": "A0A8C2MHT8", "url": "https://omabrowser.org/oma/group/A0A8C2MHT8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C7P3-1", "protein_name": "Protein SLFN14", "gene_name": "SLFN14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESLKTDTEMPYPEVIVDVGRVIFGEENRKKMTNSCLKRSENSRIIRAICALLNSGGGVIKAEIDDKTYSYQCHGLGQDLETSFQKLLPSGSQKYLDYMQQGHNLLIFVKSWSPDVFSLPLRICSLRSNLYRRDVTSAINLSASSALELLREKGFRAQRGRPRVKKLHPQQVLNRCIQEEEDMRILASEFFKKDKLMYKEKLNFTESTHVEFKRFTTKKVIPRIKEMLPHYVSAFANTQGGYVLIGVDDKSKEVVGCKWEKVNPDLLKKEIENCIEKLPTFHFCCEKPKVNFTTKILNVYQKDVLDGYVCVIQVEPFCCVVFAEAPDSWIMKDNSVTRLTAEQWVVMMLDTQSAPPSLVTDYNSCLISSASSARKSPGYPIKVHKFKEALQRHLFPVTQEEVQFKPESLCKKLFSDHKELEGLMKTLIHPCSQGIVIFSRSWAGDVGFRKEQNVLCDALLIAVNSPVVLYTILIDPNWPGGLEYARNTAHQLKQKLQTVGGYTGKVCIIPRLIHLSSTQSRPGEIPLRYPRSYRLADEEEMEDLLQALVVVSLSSRSLLSDQMGCEFFNLLIMEQSQLLSESLQKTRELFIYCFPGVRKTALAIKIMEKIKDLFHCKPKEILYVCESDSLKDFVTQQTTCQAVTRKTFMQGEFLKIKHIVMDETENFCSKYGNWYMKAKNITHPKAKGTGSENLHHGILWLFLDPFQIHHADVNGLPPPSAQFPRKTITSGIHCALEIAKVMKEEMKRIKENPPSNMSPDTLALFSETAYEEATCAQALPGVCETKTNLTTEQIANYVARKCHSLFQCGYLPKDIAILCRRGEDRGRYRLALLKAMELIETHRPSEVVFSPATGVWGSHIVLDSIQQFSGLERTVVFGLSPECDQSEEFHKLCFASRAIKHLYLLYEKRAAY", "length": 912 }, "evidence": [ { "id": "A0A8C2MHT8", "url": "https://omabrowser.org/oma/group/A0A8C2MHT8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "V9GXG1-1", "protein_name": "Protein SLFN14", "gene_name": "Slfn14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPYAEITVNLGKVTLGEENRKKMTNSCLKRHENSSLVQAVCALLNSGGGVIKAEINDKSYSYRCHGLGQDLETSFQKLLPSGSQKHLDYMQQNHDLLIFVKSWSPDASSLPLRICSLRSNLYQRDVTSAINLCANGALELLREKESRAQRGTPRLHSQDHILNRTIQEEEDIKMCALEFLKKDKLNFKEKLSFTESTHVEFKRFTTKKIVPRIKETLAHYVSAFANTQGGYIIIGVDDKSKEVFGCKKEKVNPDSLKTEIKNCIEKLPTYHFCREKPKVNFTTKILKVYQKEALYGFVCVVQVEPFCCVVFAEDPDSWIMENNIVTRLKVQQWVEMMLDIQSDPSSGFPTINDSAHLMTPALSAPRRPAYLTKVLEHKETLQRHFFSVTQENLQFQPESLCKKLFSDHEGLEDLLKAQTHPCSHGIVIFSRSWAGDIGLMREEKVLCDALLVAVGSPLVLYTILTDPSSTGRADYTQNTALQLKRQLQTLGGYPGKICVIPRVIYLASRGSRPDQPPVYYPRPYTLSSKAEVEDLLQGLVLVSLCSRSVLSDQLGCEFFKQCLEEQANTLSRNLQESRELFIHCLPGTRKTALAIKMVEKIKDVFHCKPKEILFVCENDSLRDFVMQQVTCRAVTRRTFMREEFPKIKHIVMDETENFCSRHGDWYVKAKSTTHPKANGAANEHPHHGILWLFLDPFQVRHADGSGLPVPSAQFPRKMITSEIHCAVEIAKVMKDEMKRMQENPPSMGLPDTLATFQEAPYEEAMRAGALPGVCEIKANLTPEQIANYVAEKCHSLFHEGYLPQDIAILYRRREDRGQYKDVLLKAMARGTTEVAFNSAADVCADGIILDSVEQFSGMVRNIVFGLCPESVHSEGVHKLCFASKAIKHLYLLYGGRTAF", "length": 899 }, "evidence": [ { "id": "A0A8C2MHT8", "url": "https://omabrowser.org/oma/group/A0A8C2MHT8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "pmid": "" }, { "name": "RNA endonuclease activity", "id": "GO:0004521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004521", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mRNA catabolic process", "id": "GO:0006402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006402", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "pmid": "" }, { "name": "rRNA catabolic process", "id": "GO:0016075", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016075", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "pmid": "" }, { "name": "platelet maturation", "id": "GO:0036345", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036345", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHT8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHT8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 617, "end_pos": 619, "annotation": "n_glycosylation_sequon" }, { "start_pos": 746, "end_pos": 748, "annotation": "n_glycosylation_sequon" }, { "start_pos": 778, "end_pos": 780, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MHT8", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_003617245.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007653236", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653236" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHX8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHX8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH8orf33", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHX8", "locus": {} } ], "crossref": [ { "id": "100750934", "url": "https://www.ncbi.nlm.nih.gov/gene/100750934", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750934", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750934", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CLCAGQP", "url": "https://omabrowser.org/oma/group/CLCAGQP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MHX8", "url": "https://www.orthodb.org/?gene=A0A8C2MHX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FHT6", "url": "https://www.orthodb.org/?gene=A0A9J7FHT6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13602", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13602", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13602:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13602:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15393", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15393", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007653236", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653236", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHX8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHT6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALGRPAREAPAASSRRTQRAARRPRLPRPACGAADPPLVSLVQPACDSATRAHPTGNTVSMKQKKKKIPNRVSGTNGDGKISEKPVLDEAPPSAEAQAEQLARELAWCVEQLELGLKTQKPTPKQKEQAVGAIRTLRSEKTPLPRKRQLMRSLFGDYRAQMDAEWQEALRALRTATHSARVQLVGETARKKSGRVCRPRPTGRTKATVDFPDEEFRFNFF", "length": 222, "header": "tr|A0A8C2MHX8-1|A0A8C2MHX8_CRIGR Isoform 1 of UPF0488 protein C8orf33 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf33 PE=3 SV=1 CANONICAL=A0A8C2MHX8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHX8/entry", "sequence": { "sequence": "MAALGRPAREAPAASSRRTQRAARRPRLPRPACGAADPPLVSLVQPACDSATRAHPTGNTVSMKQKKKKIPNRVSGTNGDGKISEKPVLDEAPPSAEAQAEQLARELAWCVEQLELGLKTQKPTPKQKEQAVGAIRTLRSEKTPLPRKRQLMRSLFGDYRAQMDAEWQEALRALRTATHSARVQLVGETARKKSGRVCRPRPTGRTKATVDFPDEEFRFNFF", "length": 222, "header": "tr|A0A8C2MHX8-1|A0A8C2MHX8_CRIGR Isoform 1 of UPF0488 protein C8orf33 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf33 PE=3 SV=1 CANONICAL=A0A8C2MHX8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHT6/entry", "sequence": { "sequence": "MAALGRPAREAPAASSRRTQRAARRPRLPRPACGAADPPLVSLVQPACDSATRAHPTGNTVSMKQKKKKIPNRVSGTNGDGKISEKPVLDEAPPSAEAQAEQLARELAWCVEQLELGLKTQKPTPKQKEQAVGAIRTLRSEKTPLPRKRQLMRSLFGDYRAQMDAEWQEALRALRTGEEPGSD", "length": 183, "header": "tr|A0A9J7FHT6-1|A0A9J7FHT6_CRIGR Computationally mapped isoform of UPF0488 protein C8orf33 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH8orf33 PE=3 SV=1 CANONICAL=A0A8C2MHX8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHX8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHX8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MHX8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHX8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750934", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750934", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZDG0-1", "protein_name": "Similar to human chromosome 8 open reading frame 33", "gene_name": "C7h8orf33", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYTGNQLNHLALCVPRPEPPCMSTLPHLWAFPSTPRVPFSPGIVLFFGGALCWVFRGLKLSSCALCQPKLQAQPGALRPAEPGHPAREAPAASSRRTNRAPRRPQLSRPASGASDPPLRNSVQPTCDSANRTHPVGNTVSMKQKKKKTPNRVSGTNGKEKPSENPTPDEAPPSAEAQAEQLARELAWCVEQLELGLRTQRPTPKQKEQAVGAIRTLRSEKTPLPRKRQLMRSLFGDYRAQMDAEWREALRALKAATRSAQVQLVGEAARKKSGRVCRPRPAGRAGTMSDLTNEEFRFNFF", "length": 300 }, "evidence": [ { "id": "A0A8C2MHX8", "url": "https://omabrowser.org/oma/group/A0A8C2MHX8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KID8-1", "protein_name": "UPF0488 protein C8orf33 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAPGRPARETAAAPGPGRPTCRDAASRTKKQKKKTRDGASVANGSGKTPEKQDPKEAPLSAEAQAEQLARELAWCVEKLELGLKMQRPTPKQKEQALGAIRTLRSQRTPLPRKRQLMRSLFGDYRAQIEAEWREALQALRTAAHSAQVQPVGEAARKKSRRVCRPRPEGRSKGTSDTRDEEFRFNFF", "length": 188 }, "evidence": [ { "id": "A0A8C2MHX8", "url": "https://omabrowser.org/oma/group/A0A8C2MHX8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9H7E9-1", "protein_name": "UPF0488 protein C8orf33", "gene_name": "C8orf33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALGHLAGEAAAAPGPGTPCASRGARLPGPVSSARNPSTVCLCPEQPTCSNADSRAHPLGDEGGTASKKQKNKKKTRNRASVANGGEKASEKLAPEEVPLSAEAQAQQLAQELAWCVEQLELGLKRQKPTPKQKEQAIGAIRTLRSKRTPLPRKRQLMHSLFGDYRAQMEAEWREALRALRAAAYSAQVQPVDGATRKKSQRVCRPRSIWRAKATLDMPDEEFRFNFF", "length": 229 }, "evidence": [ { "id": "A0A8C2MHX8", "url": "https://omabrowser.org/oma/group/A0A8C2MHX8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MI00-1", "uniprot_ac": "A0A8C2MI00", "uniprot_id": "A0A8C2MI00_CRIGR", "mass": { "chemical_mass": 24317.0, "monoisotopic_mass": 24317.0 }, "refseq": { "ac": "XP_027256380", "name": "UPF0711 protein C18orf21 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256380" }, "gene_names": [ { "name": "C2H18orf21", "type": "recommended", "evidence": [ { "id": "A0A8C2MI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00" } ] }, { "name": "C2H18orf21", "type": "synonym", "evidence": [ { "id": "XP_027256380", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256380" } ] } ], "protein_names": [ { "name": "UPF0711 protein C18orf21 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027256380", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256380" }, { "id": "A0A8C2MI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256380" } ] }, { "annotation": "Specific component of the MRP ribonucleoprotein endoribonuclease, Rnase/Mrp complex, a ribonucleoprotein complex involved in pre-rRNA processing.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00#function" }, { "database": "UniProtKB", "id": "ARBA00094137", "url": "https://www.uniprot.org/uniprotkb/ARBA00094137#function" }, { "database": "UniProtKB", "id": "A0A9J7FFT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFT9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C2H18orf21", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00", "locus": {} } ], "crossref": [ { "id": "100767460", "url": "https://www.ncbi.nlm.nih.gov/gene/100767460", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767460", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MI00", "url": "https://www.orthodb.org/?gene=A0A8C2MI00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31402", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31402", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31402:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31402:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15719", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15719", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256380", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MI00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MI00-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRQKYYLEAAARGLVESCPGQARYLLWAYSSTHEEHSTFQETCPNCFQLLVLDNSRVRLKPKAKLTPKIQKLLNREARNHTLSFKEAKLLRKYKDSASVLLVTCRTCNRTMKHHGKSRSFLSALKSNTATATNKANLKTPQRKTPGSTNPSHNVSSSKGKSPSLTIRTPASGQSTPICSSRNGSKRKKHFSQLKALLSQNASEKSPKLDFRHFLSSL", "length": 217, "header": "tr|A0A8C2MI00-1|A0A8C2MI00_CRIGR Isoform 1 of UPF0711 protein C18orf21 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=C2H18orf21 PE=3 SV=1 CANONICAL=A0A8C2MI00-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MI00-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI00/entry", "sequence": { "sequence": "MRQKYYLEAAARGLVESCPGQARYLLWAYSSTHEEHSTFQETCPNCFQLLVLDNSRVRLKPKAKLTPKIQKLLNREARNHTLSFKEAKLLRKYKDSASVLLVTCRTCNRTMKHHGKSRSFLSALKSNTATATNKANLKTPQRKTPGSTNPSHNVSSSKGKSPSLTIRTPASGQSTPICSSRNGSKRKKHFSQLKALLSQNASEKSPKLDFRHFLSSL", "length": 217, "header": "tr|A0A8C2MI00-1|A0A8C2MI00_CRIGR Isoform 1 of UPF0711 protein C18orf21 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=C2H18orf21 PE=3 SV=1 CANONICAL=A0A8C2MI00-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFT9/entry", "sequence": { "sequence": "MRQKYYLEAAARGLVESCPGQARYLLWAYSSTHEEHSTFQETCPNCFQLLVLDNSRVRLKPKAKLTPKIQKLLNREARNHTLSFKEAKLLRKYKDSASVLNTCIWTVNTHLLLKEREQKKKTLLSTKSAA", "length": 130, "header": "tr|A0A9J7FFT9-1|A0A9J7FFT9_CRIGR Computationally mapped isoform of UPF0711 protein C18orf21 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=C2H18orf21 PE=3 SV=1 CANONICAL=A0A8C2MI00-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613797.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500555", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500555" } ] }, { "annotation": "Component of a complex that binds and activates STK11/LKB1. In the complex, required to stabilize the interaction between CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta) and STK11/LKB1.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44#function" }, { "database": "UniProtKB", "id": "ARBA00025206", "url": "https://www.uniprot.org/uniprotkb/ARBA00025206#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cab39l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44", "locus": {} } ], "crossref": [ { "id": "100764345", "url": "https://www.ncbi.nlm.nih.gov/gene/100764345", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764345", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764345", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYNEFTR", "url": "https://omabrowser.org/oma/group/HYNEFTR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MI44", "url": "https://www.orthodb.org/?gene=A0A8C2MI44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500555", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500555", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MI44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MI44-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQSMKEILCGTNDKEPPTEPVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGARSPTVEYISSHPHILSMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337, "header": "tr|A0A8C2MI44-1|A0A8C2MI44_CRIGR Isoform 1 of Calcium-binding protein 39-like OS=Cricetulus griseus OX=10029 GN=Cab39l PE=3 SV=1 CANONICAL=A0A8C2MI44-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MI44-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44/entry", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQSMKEILCGTNDKEPPTEPVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGARSPTVEYISSHPHILSMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337, "header": "tr|A0A8C2MI44-1|A0A8C2MI44_CRIGR Isoform 1 of Calcium-binding protein 39-like OS=Cricetulus griseus OX=10029 GN=Cab39l PE=3 SV=1 CANONICAL=A0A8C2MI44-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764345", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764345", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LKH8-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLFSKSHKNPAEIVKILRDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTSDKEPPVEAVAQLSQELYNTGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRIPTVEYISAHPHILFMLLKGYEVPQIALRCGIMLRECIRHEPLAKIILFSNQFQDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLTMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSNFQKERTDDEQFTDEKNYLIKQIRDLKKVAP", "length": 334 }, "evidence": [ { "id": "A0A8C2MI44", "url": "https://omabrowser.org/oma/group/A0A8C2MI44/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A4X1SLB8-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSTFQKERTDDEQFTDEKNYLIKQIRDLKKTTP", "length": 337 }, "evidence": [ { "id": "A0A8C2MI44", "url": "https://omabrowser.org/oma/group/A0A8C2MI44/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1NV80-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPLFSKSHKNPAEIVKILKENMAILEKQEKKTDKASEEVSKSLQAMKEILCGTTDKEPPTEVVAQLAQELYNSGLLVTLIANLQLIDFEGKKDVSQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYESPNIALRCGIMLRECIRHEPLAKIILFSEQFRDFFKYVEMSTFDIASDAFATFKDLLTRHKLLVADFMEQNYDTIFEDYEKLLHSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPNKTQPIVEILLKNQPKLIEFLSNFQKERTDDEQFTDEKNYLIKQIRDLKKPTA", "length": 334 }, "evidence": [ { "id": "A0A8C2MI44", "url": "https://omabrowser.org/oma/group/A0A8C2MI44/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5XIJ7-1", "protein_name": "Calcium binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKELLCGAQDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYICSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKVILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "A0A8C2MI44", "url": "https://omabrowser.org/oma/group/A0A8C2MI44/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DB16-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "A0A8C2MI44", "url": "https://omabrowser.org/oma/group/A0A8C2MI44/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FGK3-1", "protein_name": "Putative MO25-like protein At5g47540", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNILVANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRDLA", "length": 343 }, "evidence": [ { "id": "A0A8C2MI44", "url": "https://omabrowser.org/oma/group/A0A8C2MI44/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9H9S4-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "CAB39L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP", "length": 337 }, "evidence": [ { "id": "A0A8C2MI44", "url": "https://omabrowser.org/oma/group/A0A8C2MI44/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MI50-1", "uniprot_ac": "A0A8C2MI50", "uniprot_id": 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"function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613641.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497167", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497167" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI50", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mroh8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50", "locus": {} } ], "crossref": [ { "id": "100764023", "url": "https://www.ncbi.nlm.nih.gov/gene/100764023", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045206", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055406", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055406", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764023", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764023", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IARLKDW", "url": "https://omabrowser.org/oma/group/IARLKDW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MI50", "url": "https://www.orthodb.org/?gene=A0A8C2MI50", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G5Y1", "url": "https://www.orthodb.org/?gene=A0A9J7G5Y1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23120:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497167", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497167", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MI50", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MI50-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5Y1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLPRRGGEQRLVGARVIRTSLPRATPRSPRRIGRGAPLLSHAQRLTRRRHSSEQVPAEPEQADFRCGKWVQERAGGDARDPHTSSARMGSRQRVGGTEEVVIPCASDSDSGSVDLQLSNLEDIQKEATNVEFADLDIAEIPEFIQESLPDNLRPLTPQAPLNEASIERLVQSIQEVIYGELKSEHEKLMFLRSLSSLSQTLPYDEVTESFIHRHTAEIVHVLSVLVQEEPLHSLTSLVRQELFVTITDLSYRDVHLLFGSEDREDLLGLITESMFSLPAISTPTQLLSTVSNHTSHPECLYRQTFQAFSVMLQSLVVKDPHLENFDSIFKHMDPWLQSYKDHERERATAVMAQVLKCLSSYLNLQLPLQFQRLGHLVAVMALLCGDPLKEVAEEAAEGTHYLLHITLKLKYITQNRDNGKSLRETLKRCRELLEHYSVKQFYRCPFKIVQVFEVFLDSQELGQFIMTTLDSLKSLPNPCTQQTAGELLITLVRSAEARFEKVPEIIGVICARLSIITLPTVRQQIINTVSLFISRPKYTDIVLSHLLCHPVPYDRHLAELWRTLEVELSNTTWVLWRLLRKLQKCHGVPTQEKMAYVAVAATDALYEVLMGNKLRAATFRLFPQLLMTLLIQIHHSIGLTMSDVIIPSGLYAEQEIPMEVTPLCFAIQATKTLLLRTLCWQEFSIMEKNDGWTLLKGEYHLQGVSLLANALLERSHLFAYKTMYLLVPLINRGNEKHKLTSAGFFVELLKSPVARRLPKLYSTVRLKDWLYDENKLFRILALRGLYNLVRHQEMREDIKSTIPCIVDSLQEKDERIVLLAIQTLLQLVKTLDFTTLAAIMKILCSLFGDMRRGVHHFSMTLFGASIKAVKHTDKKCVESHVLESLVPLLLFSQDDNDDIAKESRRVLTLCAQFLKWKLPREVYCKDPFYIKPNEVRRVCKFFGEKSKGKINILDQTLMYSKDPKLPIRRTAVLFIGILSKYVDPNELKKKGTDWIENELRELLQDPEPSLRIVASQALFRIQRVRNESESQIRVSWLRKLFGCLDT", "length": 1047, "header": "tr|A0A8C2MI50-1|A0A8C2MI50_CRIGR Isoform 1 of Protein MROH8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mroh8 PE=4 SV=1 CANONICAL=A0A8C2MI50-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MI50-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50/entry", "sequence": { "sequence": "MPLPRRGGEQRLVGARVIRTSLPRATPRSPRRIGRGAPLLSHAQRLTRRRHSSEQVPAEPEQADFRCGKWVQERAGGDARDPHTSSARMGSRQRVGGTEEVVIPCASDSDSGSVDLQLSNLEDIQKEATNVEFADLDIAEIPEFIQESLPDNLRPLTPQAPLNEASIERLVQSIQEVIYGELKSEHEKLMFLRSLSSLSQTLPYDEVTESFIHRHTAEIVHVLSVLVQEEPLHSLTSLVRQELFVTITDLSYRDVHLLFGSEDREDLLGLITESMFSLPAISTPTQLLSTVSNHTSHPECLYRQTFQAFSVMLQSLVVKDPHLENFDSIFKHMDPWLQSYKDHERERATAVMAQVLKCLSSYLNLQLPLQFQRLGHLVAVMALLCGDPLKEVAEEAAEGTHYLLHITLKLKYITQNRDNGKSLRETLKRCRELLEHYSVKQFYRCPFKIVQVFEVFLDSQELGQFIMTTLDSLKSLPNPCTQQTAGELLITLVRSAEARFEKVPEIIGVICARLSIITLPTVRQQIINTVSLFISRPKYTDIVLSHLLCHPVPYDRHLAELWRTLEVELSNTTWVLWRLLRKLQKCHGVPTQEKMAYVAVAATDALYEVLMGNKLRAATFRLFPQLLMTLLIQIHHSIGLTMSDVIIPSGLYAEQEIPMEVTPLCFAIQATKTLLLRTLCWQEFSIMEKNDGWTLLKGEYHLQGVSLLANALLERSHLFAYKTMYLLVPLINRGNEKHKLTSAGFFVELLKSPVARRLPKLYSTVRLKDWLYDENKLFRILALRGLYNLVRHQEMREDIKSTIPCIVDSLQEKDERIVLLAIQTLLQLVKTLDFTTLAAIMKILCSLFGDMRRGVHHFSMTLFGASIKAVKHTDKKCVESHVLESLVPLLLFSQDDNDDIAKESRRVLTLCAQFLKWKLPREVYCKDPFYIKPNEVRRVCKFFGEKSKGKINILDQTLMYSKDPKLPIRRTAVLFIGILSKYVDPNELKKKGTDWIENELRELLQDPEPSLRIVASQALFRIQRVRNESESQIRVSWLRKLFGCLDT", "length": 1047, "header": "tr|A0A8C2MI50-1|A0A8C2MI50_CRIGR Isoform 1 of Protein MROH8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mroh8 PE=4 SV=1 CANONICAL=A0A8C2MI50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G5Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5Y1/entry", "sequence": { "sequence": "MLNLQSEHEKLMFLRSLSSLSQTLPYDEVTESFIHRHTAEIVHVLSVLVQEEPLHSLTSLVRQELFVTITDLSYRDVHLLFGSEDREDLLGLITESMFSLPAISTPTQLLSTVSNHTSHPECLYRQTFQAFSVMLQSLVVKDPHLENFDSIFKHMDPWLQSYKDHERERATAVMAQVLKCLSSYLNLQLPLQFQRLGHLVAVMALLCGDPLKEVAEEAAEGTHYLLHITLKLKYITQNRDNGKSLRETLKRCRELLEHYSVKQFYRCPFKIVQVFEVFLDSQELGQFIMTTLDSLKSLPNPCTQQTAGELLITLVRSAEARFEKVPEIIGVICARLSIITLPTVRQQIINTVSLFISRPKYTDIVLSHLLCHPVPYDRHLAELWRTLEVELSNTTWVLWRLLRKLQKCHGVPTQEKMAYVAVAATDALYEVLMGNKLRAATFRLFPQLLMTLLIQIHHSIGLTMSDVIIPSGLYAEQEIPMEVTPLCFAIQATKTLLLRTLCWQEFSIMEKNDGWTLLKGEYHLQGVSLLANALLERSHLFAYKTMYLLVPLINRGNEKHKLTSAGFFVELLKSPVARRLPKLYSTVRLKDWLYDENKLFRILALRGLYNLVRHQEMREDIKSTIPCIVDSLQEKDERIVLLAIQTLLQLVKTLDFTTLAAIMKILCSLFGDMRRGVHHFSMTLFGASIKAVKHTDKKCVESHVLESLVPLLLFSQDDNDDIAKESRRVLTLCAQFLKWKLPREVYCKDPFYIKPNEVRRVCKFFGEKSKGKINILDQTLMYSKDPKLPIRRTAVLFIGILSKYVDPNELKKKGTDWIENELRELLQDPEPSLRIVASQALFRIQRVRNESESQIRVSWLRKLFGCLDT", "length": 869, "header": "tr|A0A9J7G5Y1-1|A0A9J7G5Y1_CRIGR Computationally mapped isoform of Protein MROH8 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mroh8 PE=4 SV=1 CANONICAL=A0A8C2MI50-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI50", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI50", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764023", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764023", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZA82-1", "protein_name": "Maestro heat-like repeat family member 8", "gene_name": "Mroh8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLPRRGGEPRLAGARVVRTSLPRATPRSPKRVGRGAPLLSHAQRLTRRRHSSEQVPPEPEHADFRSGKWLQERAGGDARDLRHTPLARMGSRQRVSGTEEVVIPCASDSDSGSVDLQLSNLDDIHKGGPSVEFADSDISDIPILPQESLPDNLRSPTLQEPLSEASVERLVQSIQEVLHGDLKGELQKLKFLRSLSSLSQTIPYDESTESFIHRHTAEIVHILTVLVQEEPLHSLNSLVRQEVFVTITDLSYRDVHLLFGSEDREDLLGLITKSMMSLPAICTPIQLPRIVSNQAIQQECLYRGTFETFSVMLQSLVVKDPHLEIFDSIFKHIDPWLQSDRDHERERATFVMAKVLKCLSSYLSPKLPLQFHRLGHLVAVMALLCGDPHKEVAEEAAEGTHYLLHITLRLKYITQDRDSGKNLRETVKKCRELLEQYNLKGFYCCPFKIVQVFEVFLDSKELGQFIMTVLDSLKSLPHPYIQQTAGELLITLVKSAEARFEKVPEIIGVICARLSIITLASVRQQIINTVSLFVSRPKYTDIVLSHLLCHPVPYDRHLAELWRTLEVELSSTTWVLWRLLRKLQKCHDGPTQEKMAYVAVAVTDALYEVLMGNKLRAAAFRLFPQLLMTLLIQIHHSIGLTMSDVSIPSGLYAEQEIPTEVTPLCFAIQATKTLLLRTLCWQEFSIMEKNGGWTLLKGEGHLQGVFLLANALMERSHLFAYKIMYLLVPLINRGNDKHKITSAGFFVELLRSPMARRLPRVYSTIRLKTWLNEESKLFRILALRGLRNLVGHREMREDIKSLLPCILNSLYETDERIILLAIQILLQLVRTLDSSTLATMMKTLLSLFGDVRQDVHRFSMTLFGASIKAVKHTEKKSVEDQVLESLVPLLLFSQDENDAIAKESRRVLTLCARFLNWKLPREVYCKDPLYIKPNEVRRVCKFFGERSKGKIDILDQTLTYSKDPKLPIRRTAVLFVGLLSNYVDASELKRKGTDWIENDLRELLQDPEPSLRIIASQALFRIQRVGNIPETEISVSWMRKLLGCLHT", "length": 1048 }, "evidence": [ { "id": "A0A8C2MI50", "url": "https://omabrowser.org/oma/group/A0A8C2MI50/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9PYI4-1", "protein_name": "Maestro heat-like repeat family member 8", "gene_name": "Mroh8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLPRRGGEPRLAGARVVRTSLPRATPRSPKRVGRGAPLLSHAQRLTRRRHSSEQVPPEPEQADFRSGKWLQERAGGDARDPRHTPLARMGSRQRASGTEEVVIPCASDSDSGSVDLQLSNLDDVQKGGASVEFTDSDIADIPTLPQESLPDNLRLLTLQEPLSETSIERLVQSIQEVLHGELKGETQKLKFLRSLSSLSQTIPYDENTESFIHRHTAEIVHVLSVLVQEEPLHSLTSMVRQEIFVTITDLSFQNVYLLFGSEDREDLLGLITKSIISLPATSTPIQLLKIVSNQAIEQECLYRETFEAFSVMLQSLVIKDPHLEFFDSIFKHIDPWLQSDRDHERERATTVMAQVLKCLSSYLSLKLPLQFQRLGNLVAVMALLCGDPQKEVAEEAAEGTHYLLHITLRLKYIMQDRDNNSKNLRETLKKCRLLLEQYSLKRFYCCPYKIVQVFEVFLDSRELGQFIMTILDSLKNLPHPCIQQTAGELLITLVKSAEARFERVPEIVGVICARLSIITLTSVRQQIINTVSLFVSRPKYTDVVLSHLLCHPVPYDRHLAELWRSLEVELSNTTWVLWRLLRKLQKCHEGPSQEKMAYVAVAVTDALYEVLMGNKLRAAAFRLFPQLLMTLLIQIHHSIGLTMSDVSIPSGLYAEQEVPMEVTPLCFAIQATKTLLLRTLCWQEFSIMEKSGGWTLLKGEGHLQGVFLLANALMERSHLFAYKILYLLVPLINRGNDKHKLTSAGFFVELLKSPMARRLPKVYSTIRLKAWLNEESKLFRILALRGLRNLVRHQEMREDIKSLLPCILSSLHETDERIILLAIQILLQLVRMLDSTTLATMMKTLLSLFGDVRQDVHCFSMTLFGASIKAVKHTEKKSVEDQVLESLVPLLLFSQDENDEIAKESRRVLTLCARFLNWKLPREVYCKDPLYIKPNEVRRVCKFFGEKSKGKIDILDQTLPYSKDPKLPIRRTAVLFVGLLSHYVDTSELKRKGTDWIEKDLRELLQDPEPSLRILASQALFRIQRVGSTSEAETSVSWLRKLLCCLHT", "length": 1049 }, "evidence": [ { "id": "A0A8C2MI50", "url": "https://omabrowser.org/oma/group/A0A8C2MI50/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI50", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1027, "end_pos": 1029, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MI50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50" }, { "id": "PF23210", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23210" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MROH2B-like HEAT-repeats", "eco_id": "ECO_0000259", "start_pos": 178, "end_pos": 318, "start_aa": "Ile", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MI50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50" }, { "id": "PF21047", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21047" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Maestro-like HEAT-repeats", "eco_id": "ECO_0000259", "start_pos": 343, "end_pos": 576, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MI50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI50" }, { "id": "PF23227", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23227" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Maestro/Maestro-like HEAT-repeats", "eco_id": "ECO_0000259", "start_pos": 766, "end_pos": 1020, "start_aa": "Arg", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1027, "end_pos": 1029 }, { "start_pos": 293, "end_pos": 295 }, { "start_pos": 571, "end_pos": 573 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 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This record is derived from a genomic sequence (NW_003614957.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016835319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835319" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI65", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam13a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65", "locus": {} } ], "crossref": [ { "id": "100753068", "url": "https://www.ncbi.nlm.nih.gov/gene/100753068", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753068", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753068", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MI65", "url": "https://www.orthodb.org/?gene=A0A8C2MI65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15904", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15904", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15904:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15904:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26116", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26116", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016835319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835319", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MI65", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MI65-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACEIMPLRSSQEDERPLSPFYLSAHVSQVSNVSTTGELLERTIRSAVEEHLFDANSSGDQSSEDSETGPSSASSTPTRHRGHQFKKQEDVWHGRDKELINKENIPYGFSNSDECVLNSQEAERFPDDTCDYVGERSKPKRQKPSSRLTELSENHDGLLTMESLSCMPSLERPGPEAVELRSNGSKEDERGGGDTQHYESPTMKIQEHPSISDTKQQRNQDADDQQESFVPEMPQLDLTALCDEKNWEEPIPSWHQENVDSDEARLSPQAGRLIHQLLDEDSDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDEQEDLTPVQLTRRIQTLKKKIRKFEDRFEEERKYKPSHSDKAANPEVLKWTNDLAKFRKQLKESKLKISEEDLAPKTRQRSNTLPKSFGSQLEKEDEKKQELVDKAIRPSVEATLECIQRKLQEKRVESSRPEDIKDMTKDQIANEKVALQKALLYYESIHGRPVTKTERQIMKPLYDRYRLVKQILSRASTVPIIGSPSSKRRSPLLQPIIEGETASFFKEIKEQEEGSEDDSSTKPDFTVTLKTDCSAQCFLDQLEDDADGFISPMDDKMPSKCSQDSGLSNLHSASIPELLEYLQEMREEKKMIRKKLHDFEDNFFRQNGRNVQKEDRTPMAEEYNEYKHIKAKLRLLEVLISKRDTDSKSM", "length": 693, "header": "tr|A0A8C2MI65-1|A0A8C2MI65_CRIGR Isoform 1 of Protein FAM13A OS=Cricetulus griseus OX=10029 GN=Fam13a PE=3 SV=1 CANONICAL=A0A8C2MI65-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MI65-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65/entry", "sequence": { "sequence": "MACEIMPLRSSQEDERPLSPFYLSAHVSQVSNVSTTGELLERTIRSAVEEHLFDANSSGDQSSEDSETGPSSASSTPTRHRGHQFKKQEDVWHGRDKELINKENIPYGFSNSDECVLNSQEAERFPDDTCDYVGERSKPKRQKPSSRLTELSENHDGLLTMESLSCMPSLERPGPEAVELRSNGSKEDERGGGDTQHYESPTMKIQEHPSISDTKQQRNQDADDQQESFVPEMPQLDLTALCDEKNWEEPIPSWHQENVDSDEARLSPQAGRLIHQLLDEDSDPMLSPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDEQEDLTPVQLTRRIQTLKKKIRKFEDRFEEERKYKPSHSDKAANPEVLKWTNDLAKFRKQLKESKLKISEEDLAPKTRQRSNTLPKSFGSQLEKEDEKKQELVDKAIRPSVEATLECIQRKLQEKRVESSRPEDIKDMTKDQIANEKVALQKALLYYESIHGRPVTKTERQIMKPLYDRYRLVKQILSRASTVPIIGSPSSKRRSPLLQPIIEGETASFFKEIKEQEEGSEDDSSTKPDFTVTLKTDCSAQCFLDQLEDDADGFISPMDDKMPSKCSQDSGLSNLHSASIPELLEYLQEMREEKKMIRKKLHDFEDNFFRQNGRNVQKEDRTPMAEEYNEYKHIKAKLRLLEVLISKRDTDSKSM", "length": 693, "header": "tr|A0A8C2MI65-1|A0A8C2MI65_CRIGR Isoform 1 of Protein FAM13A OS=Cricetulus griseus OX=10029 GN=Fam13a PE=3 SV=1 CANONICAL=A0A8C2MI65-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI65", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI65", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753068", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753068", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MI65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI65" }, { "id": "PF26116", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26116" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM13A-like", "eco_id": "ECO_0000259", "start_pos": 617, "end_pos": 686, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 183, "end_pos": 185 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"XP_027280199", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280199" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280199", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280199" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI77", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI77" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773601", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI77", "locus": {} } ], "crossref": [ { "id": "100773601", "url": "https://www.ncbi.nlm.nih.gov/gene/100773601", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773601", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773601", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WVSARYT", "url": "https://omabrowser.org/oma/group/WVSARYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MI77", "url": "https://www.orthodb.org/?gene=A0A8C2MI77", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G9Q2", "url": "https://www.orthodb.org/?gene=A0A9J7G9Q2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11785", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11785", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11785:SF340", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11785:SF340", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027280199", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280199", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MI77", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MI77-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9Q2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G9Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERSEERDGSDRPAGQEQGCGAPRLTLKREIGLWSAVSMTAGSMIGSGIFMSPQGVLVYMGSPGASLIVWATCGILAMLGALCYAELGSLIPESGGDYTYILRTFGSLPAFLVIYTFVLVARPAAITAVSLSFAEYALAPFYPGCSSLPQIMVKIVASSCILLLLLINFWSSRLSTVVMNVCTAAKVFSLLVIVVGGTVVLAQGRSRTEFLLFAFHNTTQQAGRIGMAFYQGLWSFDGWNNINIVVEELRNPKQNLVWAVMIAIPLVTILYVLVNISYLLVMSPSEILSSDAMAVIWGNQVLGSWAWLVPLAVALSTFGTVNGAFFSGSRLCYAAAREGHMPQLMSMIHVHRLTPAPAMVFTTAAALVLVIPGNFSTFVTLLSFFSWLTSGTTFGCLLYLRIKTKNLPHTYKVPIFIPAIMLLVSLYLVLALIIHHPQMESLYIFFFLLSGFLVYFLLFRFQCQSKCMEAATTHLQLLLEVAPTTKGH", "length": 488, "header": "tr|A0A8C2MI77-1|A0A8C2MI77_CRIGR Isoform 1 of B(0,+)-type amino acid transporter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100773601 PE=4 SV=1 CANONICAL=A0A8C2MI77-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MI77-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI77/entry", "sequence": { "sequence": "MERSEERDGSDRPAGQEQGCGAPRLTLKREIGLWSAVSMTAGSMIGSGIFMSPQGVLVYMGSPGASLIVWATCGILAMLGALCYAELGSLIPESGGDYTYILRTFGSLPAFLVIYTFVLVARPAAITAVSLSFAEYALAPFYPGCSSLPQIMVKIVASSCILLLLLINFWSSRLSTVVMNVCTAAKVFSLLVIVVGGTVVLAQGRSRTEFLLFAFHNTTQQAGRIGMAFYQGLWSFDGWNNINIVVEELRNPKQNLVWAVMIAIPLVTILYVLVNISYLLVMSPSEILSSDAMAVIWGNQVLGSWAWLVPLAVALSTFGTVNGAFFSGSRLCYAAAREGHMPQLMSMIHVHRLTPAPAMVFTTAAALVLVIPGNFSTFVTLLSFFSWLTSGTTFGCLLYLRIKTKNLPHTYKVPIFIPAIMLLVSLYLVLALIIHHPQMESLYIFFFLLSGFLVYFLLFRFQCQSKCMEAATTHLQLLLEVAPTTKGH", "length": 488, "header": "tr|A0A8C2MI77-1|A0A8C2MI77_CRIGR Isoform 1 of B(0,+)-type amino acid transporter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100773601 PE=4 SV=1 CANONICAL=A0A8C2MI77-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9Q2/entry", "sequence": { "sequence": "MERSEERDGSDRPAGQEQGCGAPRLTLKREIGLWSAVSMTAGSMIGSGIFMSPQGVLVYMGSPGASLIVWATCGILAMLGALCYAELGSLIPESGGDYTYILRTFGSLPAFLVIYTFVLVARPAAITAVSLSFAEYALAPFYPGCSSLPQIMVKIVASSCILLLLLINFWSSRLSTVVMNVCTAAKVFSLLVIVVGGTVVLAQGRSRTEFLLFAFHNTTQQAGRIGMAFYQGLWSFDGWNNINIVVEELRNPKGKTEVSKRGIILNSYCQHSY", "length": 273, "header": "tr|A0A9J7G9Q2-1|A0A9J7G9Q2_CRIGR Computationally mapped isoform of L-type amino acid transporter 1-like protein MLAS isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773601 PE=4 SV=1 CANONICAL=A0A8C2MI77-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614834.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510193", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510193" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI98", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI98" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH11orf86", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI98", "locus": {} } ], "crossref": [ { "id": "100759935", "url": "https://www.ncbi.nlm.nih.gov/gene/100759935", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759935", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759935", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WLKQYQQ", "url": "https://omabrowser.org/oma/group/WLKQYQQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MI98", "url": "https://www.orthodb.org/?gene=A0A8C2MI98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31831", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31831", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31831:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31831:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003510193", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510193", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MI98", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MI98-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTSHRSRSFREPRSCYGKLHESQESRLHRALSLRQGREKSRSQGLDGMEGLEVSAQERLPGTLGDTEQLIQSQREGRQRWLRQYQQQVRRRWKSFVASFPSVTLNRPASPETSLNTNS", "length": 119, "header": "tr|A0A8C2MI98-1|A0A8C2MI98_CRIGR Isoform 1 of Uncharacterized protein C11orf86 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH11orf86 PE=4 SV=1 CANONICAL=A0A8C2MI98-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MI98-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI98/entry", "sequence": { "sequence": "MGTSHRSRSFREPRSCYGKLHESQESRLHRALSLRQGREKSRSQGLDGMEGLEVSAQERLPGTLGDTEQLIQSQREGRQRWLRQYQQQVRRRWKSFVASFPSVTLNRPASPETSLNTNS", "length": 119, "header": "tr|A0A8C2MI98-1|A0A8C2MI98_CRIGR Isoform 1 of Uncharacterized protein C11orf86 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH11orf86 PE=4 SV=1 CANONICAL=A0A8C2MI98-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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automated computational analysis. This record is derived from a genomic sequence (NW_003613932.1) and transcript sequence (IACG01048207.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641821", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641821" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MII6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam122b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6", "locus": {} } ], "crossref": [ { "id": "100767852", "url": "https://www.ncbi.nlm.nih.gov/gene/100767852", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767852", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767852", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MDVDCPI", "url": "https://omabrowser.org/oma/group/MDVDCPI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MII6", "url": "https://www.orthodb.org/?gene=A0A8C2MII6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22227:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22227:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27638", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27638", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641821", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641821", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MII6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MII6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCYSPSLQMFVSSSGMPSSPVSNPRHFSSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSCSDILDGSSISSGLSSDSLATGSAPAESPVACSNSCSSFILMDDLSPK", "length": 256, "header": "tr|A0A8C2MII6-1|A0A8C2MII6_CRIGR Isoform 1 of Protein FAM122B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A8C2MII6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MII6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCYSPSLQMFVSSSGMPSSPVSNPRHFSSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSCSDILDGSSISSGLSSDSLATGSAPAESPVACSNSCSSFILMDDLSPK", "length": 256, "header": "tr|A0A8C2MII6-1|A0A8C2MII6_CRIGR Isoform 1 of Protein FAM122B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A8C2MII6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 121, "start_aa": "Thr", "end_pos": 121, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr121", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MII6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MII6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767852", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767852", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M803-1", "protein_name": "PABIR family member 2", "gene_name": "PABIR2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAQEKMELDFEPDTSDGGTLRRSNSAPLIHGLSDLSQVFQPYTFRARRNSTTVMSRHNLEEGMDIMNRETAHEREVQTAMQISQSWDESLSLSDSDFDKQEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSTRRSQSPIKCIRPSVLAPLKRKGEMETESQPKRLFQGTTNMLSPEAAQLSDLSSCSDILDGSNSGSGLSSESLAKGSTTADAPVACSNSCSPFILMEDLSPK", "length": 248 }, "evidence": [ { "id": "A0A8C2MII6", "url": "https://omabrowser.org/oma/group/A0A8C2MII6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1C1H5-1", "protein_name": "PABIR family member 2", "gene_name": "PABIR2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAQEKMELDLELPPGSAAAPSDGGGLRRSNSAPLIHGLSDSSQVFQPYVLRTRRNSTTVTSRHSMLLSSSPIRIPSSRLHQIRREEGVDLMNRETAHEREVQTAMQISQSWEESLSLSDNDLDKSEKSSSPKRIDFIPVSPAPSPTRGIGKQCFSPSLQMFVSSNGLPPSPIPSPTRRFSNRRSQSPINCIRPSVLGPIKRKGEMETESQPKRLFQGTTNMLSPDVTHLTDLSSCLSSDILDGSSSSVGSSSDSLTKGSITTESPVTCSNSCSSFILMDDLSPK", "length": 284 }, "evidence": [ { "id": "A0A8C2MII6", "url": "https://omabrowser.org/oma/group/A0A8C2MII6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6NZE7-1", "protein_name": "PABIR family member 2", "gene_name": "Pabir2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQEKMDLDFEADTSEGATLRRSNSAPLIHVLSDLSQVFEPYPLRTGRTSTAIMSHHSLEEGLDMMNRETTNEREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCLSPSLQMFVSSSGMPPSPVLNPRHFSRRSQSPVKCIRPSVLGPLKRKGEMEMESQPKRPFQGTTSMLSTNPAQLSDFSSCSDILDGSSISSGLSSDSLATGSAPAESPVACSNSCSPFILMDDLSPK", "length": 255 }, "evidence": [ { "id": "A0A8C2MII6", "url": "https://omabrowser.org/oma/group/A0A8C2MII6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine phosphatase inhibitor activity", "id": "GO:0004865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004865", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MII6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MII6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 121 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MIK0-1", "uniprot_ac": "A0A8C2MIK0", "uniprot_id": "A0A8C2MIK0_CRIGR", "mass": { "chemical_mass": 51488.0, "monoisotopic_mass": 51488.0 }, "refseq": { "ac": "XP_027242880", "name": "protein phosphatase 2, regulatory subunit B, gamma isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242880" }, "gene_names": [ { "name": "Ppp2r2c", "type": "recommended", "evidence": [ { "id": "A0A8C2MIK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIK0" } ] }, { "name": "Ppp2r2c", "type": "synonym", "evidence": [ { "id": "XP_027242880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242880" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B", "type": "recommended", "evidence": [ { "id": "A0A8C2MIK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIK0/entry#names_and_taxonomy" } ] }, { "name": "protein phosphatase 2, regulatory subunit B, gamma isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027242880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242880" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242880", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242880" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIK0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp2r2c", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIK0", "locus": {} } ], "crossref": [ { "id": "100750924", "url": "https://www.ncbi.nlm.nih.gov/gene/100750924", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750924", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750924", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MIK0", "url": "https://www.orthodb.org/?gene=A0A8C2MIK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027242880", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242880", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MIK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MIK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEDTDTRKINHSFLRDHSYVTEADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNAPHSQGEYDVYSTFQSHEPEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMVEVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYESDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIFQDKVNSDMH", "length": 447, "header": "tr|A0A8C2MIK0-1|A0A8C2MIK0_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Cricetulus griseus OX=10029 GN=Ppp2r2c PE=3 SV=1 CANONICAL=A0A8C2MIK0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MIK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIK0/entry", "sequence": { "sequence": "MGEDTDTRKINHSFLRDHSYVTEADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNAPHSQGEYDVYSTFQSHEPEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMVEVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYESDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIFQDKVNSDMH", "length": 447, "header": "tr|A0A8C2MIK0-1|A0A8C2MIK0_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Cricetulus griseus OX=10029 GN=Ppp2r2c PE=3 SV=1 CANONICAL=A0A8C2MIK0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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] }, { "id": "IPR004170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753157", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753157", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WQNENIV", "url": "https://omabrowser.org/oma/group/WQNENIV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MIY7", "url": "https://www.orthodb.org/?gene=A0A8C2MIY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FHF2", "url": "https://www.orthodb.org/?gene=A0A9J7FHF2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23509", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23509", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23509:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23509:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003512132", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512132", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MIY7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MIY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHF2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADRKTNGGGTSAPSSGTNLLFSSSATEFSFNVPFIPVTQAAASPASLLLPGEDSTDVGEEDSFLGQTSAHTSTPQTFSYFSQVSSNSDPFGNIGQSPSTTTSISAGQSAFSKPPATLPFTTGSQDVSNAFPPSVSKAHYGAAPSSQMGINTYLPSQPSSLPPNFGSPPQGIPQQGHNPYRHTPVSSRANPYLTPPQLQQCQTPGHPSCPPPTGPPVQTYQMPPGQMPPLPPSVQSPAPQQVPARPAGAPVQGPSPFVLQNHYEPVQPHWFYCKEVEQKQLWMPFSVLDSLNLEEIYNSVQPDPESVVLGTDGGRYDVYLYDRMRKSVYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNLDEIPDGEMPQVDHLVFMVHGIGPVCDLRFRSIIECVDDFRVVSLKLLQTHFKKSIDDGKVSRVEFLPVHWHSALGGHATGVDRNIKKITLQSIGRFRHFTNETLLDILFYNSPTYCQSIVEKVGVEINRLYSLFLSRNPNFKGKVSVAGHSLGSLILFDILSNQKDVSVSKSPGSKAVSNGIIKQPNFQEKQIPEESKLMSDESCDLDVENEEPLTLHGTLEALSLFDYISTFEKEKMDMESLLMCTVDDLKEMGIPLGPRKKIANFVKLKAAKLEQKKASEKKVVMAAVTKGQDESALKTKEMASPSESSESRRKLSLGAYVSSARVDYESFEVGTGQVSVTYTSLDFEPEIFFALGSPVGMFLTIRGVDRIDENYRLPTCKGFFNIYHPLDPVAYRLEPMVAPDLNLKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVVNQFKEEEENRVVEAEKIESPELSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTALLLLKEIYRTMDISPEQPQH", "length": 996, "header": "tr|A0A8C2MIY7-1|A0A8C2MIY7_CRIGR Isoform 1 of SEC23-interacting protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Sec23ip PE=3 SV=1 CANONICAL=A0A8C2MIY7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MIY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7/entry", "sequence": { "sequence": "MADRKTNGGGTSAPSSGTNLLFSSSATEFSFNVPFIPVTQAAASPASLLLPGEDSTDVGEEDSFLGQTSAHTSTPQTFSYFSQVSSNSDPFGNIGQSPSTTTSISAGQSAFSKPPATLPFTTGSQDVSNAFPPSVSKAHYGAAPSSQMGINTYLPSQPSSLPPNFGSPPQGIPQQGHNPYRHTPVSSRANPYLTPPQLQQCQTPGHPSCPPPTGPPVQTYQMPPGQMPPLPPSVQSPAPQQVPARPAGAPVQGPSPFVLQNHYEPVQPHWFYCKEVEQKQLWMPFSVLDSLNLEEIYNSVQPDPESVVLGTDGGRYDVYLYDRMRKSVYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNLDEIPDGEMPQVDHLVFMVHGIGPVCDLRFRSIIECVDDFRVVSLKLLQTHFKKSIDDGKVSRVEFLPVHWHSALGGHATGVDRNIKKITLQSIGRFRHFTNETLLDILFYNSPTYCQSIVEKVGVEINRLYSLFLSRNPNFKGKVSVAGHSLGSLILFDILSNQKDVSVSKSPGSKAVSNGIIKQPNFQEKQIPEESKLMSDESCDLDVENEEPLTLHGTLEALSLFDYISTFEKEKMDMESLLMCTVDDLKEMGIPLGPRKKIANFVKLKAAKLEQKKASEKKVVMAAVTKGQDESALKTKEMASPSESSESRRKLSLGAYVSSARVDYESFEVGTGQVSVTYTSLDFEPEIFFALGSPVGMFLTIRGVDRIDENYRLPTCKGFFNIYHPLDPVAYRLEPMVAPDLNLKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVVNQFKEEEENRVVEAEKIESPELSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTALLLLKEIYRTMDISPEQPQH", "length": 996, "header": "tr|A0A8C2MIY7-1|A0A8C2MIY7_CRIGR Isoform 1 of SEC23-interacting protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Sec23ip PE=3 SV=1 CANONICAL=A0A8C2MIY7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHF2/entry", "sequence": { "sequence": "MADRKTNGGGTSAPSSGTNLLFSSSATEFSFNVPFIPVTQAAASPASLLLPGEDSTDVGEEDSFLGQTSAHTSTPQTFSYFSQVSSNSDPFGNIGQSPSTTTSISAGQSAFSKPPATLPFTTGSQDVSNAFPPSVSKAHYGAAPSSQMGINTYLPSQPSSLPPNFGSPPQGIPQQGHNPYRHTPVSSRANPYLTPPQLQQCQTPGHPSCPPPTGPPVQTYQMPPGQMPPLPPSVQSPAPQQVPARPAGAPVQGPSPFVLQNHYEPVQPHWFYCKEVEQKQLWMPFSVLDSLNLEEIYNSVQPDPESVVLGTDGGRYDVYLYDRMRKSVYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNLDEIPDGEMPQVDHLVFMVHGIGPVCDLRFRSIIECVDDFRVVSLKLLQTHFKKSIDDGKVSRVEFLPVHWHSALGGHATGVDRNIKKITLQSIGRFRHFTNETLLDILFYNSPTYCQSIVEKVGVEINRLYSLFLSRNPNFKGKVSVAGHSLGSLILFDILSNQKDVSVSKSPGSKAVSNGIIKQPNFQEKQIPEESKLMSDESCDLDVENEEPLTLHGTLEALSLFDYISTFEKEKMDMESLLMCTVDDLKEMGIPLGPRKKIANFVKLKAAKLEQKKASEKKVVMAAVTKGQDESALKTKEMASPSESSESRRKLSLGAYVSSARVDYESFEVGTGQVSVTYTSLDFEPEIFFALGSPVGMFLTIRGVDRIDENYRLPTCKGFFNIYHPLDPVAYRLEPMVAPDLNLKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVVNQFKEEEENRVVEEKIESPELSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTALLLLKEIYRTMDISPEQPQH", "length": 995, "header": "tr|A0A9J7FHF2-1|A0A9J7FHF2_CRIGR Computationally mapped isoform of SEC23-interacting protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Sec23ip PE=3 SV=1 CANONICAL=A0A8C2MIY7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753157", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753157", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XG70-1", "protein_name": "SEC23-interacting protein", "gene_name": "SEC23IP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPCTMLKGLLSQSATHGMVGAKRARAAAAATAASPAPCSRQLPLTSPERGPRTSALRLLLLLFLSERPQQWRRDPDPPFPSAPPFSSSRRARPRSRHLKGGRDEGGRGRAAAGKGRGRGAAMAAAKPGTGTNLLFASSATEFNFTVPFIPVSQAPAAPPGPALLTADDSADVGEEDSFLGQTSASPNPPQTFNYFSQVPSSSDPFGSIGQPPLTSSAPPVGAAAFSRPPTSLPLVTGSQDGQNAFSPQLPKSQSSSGPPPTSQVGITGYQTPQQSCPPPANASALPSQQGYNPYRHTTLSSRANPYLTPPQLQQGHAPTPPVHPPSSVPPVQMYQTPPGPLTQFPQSQSQLRAPRPAGPLVQAPPVLPQNQYEPVQPHWFYCKEVEDKQIWMPFSILDSAKLEEVYNSVQPDPESVVLSTDGGRYDVYLYDRMRKAVYWEEEPSEVRRCMWFYKGEKDSRFIPYTEDFSDKLEAEYKRAVTTNQWHRRLEFPNGETIVMHNPKVIVQFQPSATSDEWGTSQDGQARPRVVKRGIDDDHDEIPDGEMSQVDHLVFMVHGIGPVCDLRFRSIVECVDDFRTVSLKLLQTHFRKSLEEGKVSRVEFLPVHWHSSLHGDAAGVDRNIKKITLPSIGRLRHFTNETLLDILFYNSPTYCQTIVDKVGMEMNRLYALFMSRNPDFKGGVSVAGHSLGSLILFDILSNQKDLASSVNTEPFSGVNGTEKDMSAQDKQMTEDTSSLGSSITTSGDDLCEPEVDDDVPTLQKTLEMLSLSEYANTFEKERIDMESLLMCTIDDLKEMGIPLGPRKKIANFVKDRAAKQEQKKAAAEKKAALAAMLQTQEVSQKAKETVTSVSPSESGQQHSKRKLPVGASVSSVNVDYEYFEVGTGQVSVVYSALDFEPDTFFALGSPIGVLLTVRGLEKIDENYRLPTCKGFFNIYHPLDPVAYRIEPMIIEDLSLKPVLIPHHKGRKRLHLELKDSLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQAELEKVANQIKEEEEKQVVEAEKITESPDLPKDEDFTVKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTALLFLKEIYRMMNINPEQPQH", "length": 1117 }, "evidence": [ { "id": "A0A8C2MIY7", "url": "https://omabrowser.org/oma/group/A0A8C2MIY7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3V8Q8-1", "protein_name": "SEC23-interacting protein", "gene_name": "Sec23ip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADRKANGGGASASSSGTNLLFSSSATEFSFNVPFIPVTQAAASPASLLLPGEDSTDVGEEDSFLGQTSTHTSTPQTFSYFSQVSSSSDPFGNIGQSPLATTAMSAGQSALPKPPATLPFTTGSQDMLNAFPPSVSKAPYGAAPSSQMGASTYLPSQPSSLPPNFGSPPQGIPQQGHNPYRHTPVSSRANPYITPPQLQQCQTPGHPSYPPPSAPPVQTYQMPPGPLPPLPTAVQSPAQQQVPARPAGPLVQGPSPFVLQNQYEPVQPHWFYCKEVEYKQLWMPFSVLDSLNLEEIYNSVQPDPENVVLGTDGGRYDVYLYDRMRKSVYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNLDEIPDGEMPQVDHLVFMVHGIGPVCDLRFRSIIECVDDFRVVSLKLLQTHFKKSVDEGKVSRVEFLPVHWHSALGGHATGVDRNIKKITLPSIGRFRHFTNETLLDVLFYNSPTYCQSIVEKVGVEINRLHSLFMSRNPNFKGKVSVAGHSLGSLILFDILSNQKDMSISKSPGSVAVSNGVTKHSNFQEKQVSEESKLMSDESCDLDVEDEEPLTLHGTLEALSLFDYISTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVKLKAAKLEQKKAASEKKAALAALTKGQGESAPKTKEMASPSSESNESKRKLSVGAYVSSVRVDYESFEVGTGQVSVAYSSLDFEPEIFFALGSPIGMFLTIRGVDRIDESYRLPTCKGFFNIYHPLDPVAYRLEPMIAPDLDLKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVANQIKEEEEKQVVEAEKIVESPEFSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTALLLLKEIYRTMNISPEQPQH", "length": 999 }, "evidence": [ { "id": "A0A8C2MIY7", "url": "https://omabrowser.org/oma/group/A0A8C2MIY7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NZC7-1", "protein_name": "SEC23-interacting protein", "gene_name": "Sec23ip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADRKANGGGASASSSGTNLLFSSSATEFSFNVPFIPVTQAAASPASLLLPGEDSTDVGEEDSFLGQTSTHTSTPQTFSYFSQVSSSSDPFGNIGQSPLTTSAMSAGQSALPKPPATLAFTTGSQDALSAFPPSVSKAPGATPPSQMGTSTYSPSQPSSLPPNFGSPPQGIPQQGHNPYRHTPVSSRANPYITPPQLQQCQMPGHSSYPPPSGPPVQTYQMPPGPLPPLPTAMQSPAQQQVPARPAGPLVQGPSPFVLQNQYEPVQPHWFYCKEVEYKQLWMPFSVLDSLNLEEIYNSVQPDPESVVLGTDGGRYDVYLYDRMRKSVYWEEEPTEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVSTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDSLDEIPDGEMPQVDHLVFMVHGIGPVCDLRFRSIIECVDDFRVVSLKLLQTHFKKSVDEGKVSRVEFLPVHWHSALGGHATGVDRNIKKITLPSIGRFRHFTNETLLDVLFYNSPTYCQAIVEKVEVEINRLHSLFMSRNPNFKGKVSVAGHSLGSLILFDILSNQRDMCVSKSPGSVAVSNGVIKHSQFQEKLISEESKLMSDESCDLDVEDEEPLTLHGTLEALSLFDYISTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVKLKAAKLEQKKAAAEKKAALAALTKGQDESAPKTKEMASPSSESNESKRKLSVGAYVSSVRVDYESFEVGTGQVSVAYSSLDFEPEIFFALGSPIGMLLTIRGVARIDEKYRLPTCKGFFNIYHPLDPVAYRLEPMIAPDLDLKAVLVPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSTTQLQEELEKVANQIKEEEEKQVVEAKKKKESPELSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWGSEDTALLLLKEIYRTMNISPEQPQH", "length": 998 }, "evidence": [ { "id": "A0A8C2MIY7", "url": "https://omabrowser.org/oma/group/A0A8C2MIY7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8W5R2-1", "protein_name": "Phospholipase SGR2", "gene_name": "SGR2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEDRETHLGTREVNETSPDLLKNTPSNIARLEDVIEQCHGRQKYLAQTRSPSDGSDVRWYFCKVPLAENELAASVPRTDVVGKSEYFRFGMRDSLAIEASFLQREDELLSLWWKEYAECSEGPKLQVNSKKKSIETPSEASVSSSLYEVEEERVGVPVKGGLYEVDLVRRHCFPVYWNGDNRRVLRGHWFARKGGLDWLPIPETVSEQLEVAYRNKVWRRRSFQPSGLFAARIDLQGSSLGLHALFTGEDDTWEAWLNVDPSGFSGIVGYTGNGIKLRRGYAGSYSPKPTQEELRQQKEEEMDDYCSQVPVRHLVFMVHGIGQKGEKSNLVDDVGNFRQITAALAERHLTSHQLSTQRVLFIPCQWRKGLKLSGEAAVDKCTLDGVRRFREMLSATVHDVLYYMSPIYCQAIIDSVSKQLNRLYLKFLKRNPDYVGKISIYGHSLGSVLSYDILCHQHNLSSPFPMDSVYKKFFPDEESPPTPAKADKPCSSHPSSNFEPEKSDQLNNPEKITGQDNNTMAKEPTVLEHHDVIQEDPSLISDSVVANVGLERRGGQEDDHHDSSGAISSQDVPDGADCRTPDSPSCSQEQSWDKESVNSNNEERIKLLQDEVNSLRSKVAQLLSENARILSDEKAKTSVAPKELNNEKVQTEDADAPTSFTPFIKYQKLEFKVDTFFAVGSPLGVFLALRNIRLGIGKGKDYWEEENAIEEMPACRRMFNIFHPYDPVAYRVEPLVCKEYLPERPVIIPYHRGGKRLHIGLQDFREDFAARSQRIMNHFDSVRTRVLTICQSKSADNLDEMEETDDEKDDRSYGSLMIERLTGTRDGRIDHMLQEKTFEHPYLQAIGAHTNYWRDQDTALFIIKHLYRELPDGPNSPTESTEGDDSPKDSSRPHSWIDRREADYDDEELPLTFSDKQITRSFSAEAKKYLKKP", "length": 933 }, "evidence": [ { "id": "A0A8C2MIY7", "url": "https://omabrowser.org/oma/group/A0A8C2MIY7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9Y6Y8-1", "protein_name": "SEC23-interacting protein", "gene_name": "SEC23IP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAERKPNGGSGGASTSSSGTNLLFSSSATEFSFNVPFIPVTQASASPASLLLPGEDSTDVGEEDSFLGQTSIHTSAPQTFSYFSQVSSSSDPFGNIGQSPLTTAATSVGQSGFPKPLTALPFTTGSQDVSNAFSPSISKAQPGAPPSSLMGINSYLPSQPSSLPPSYFGNQPQGIPQPGYNPYRHTPGSSRANPYIAPPQLQQCQTPGPPAHPPPSGPPVQMYQMPPGSLPPVPSSVQSPAQQQVPARPGAPSVQVPSPFLLQNQYEPVQPHWFYCKEVEYKQLWMPFSVFDSLNLEEIYNSVQPDPESVVLGTDGGRYDVYLYDRIRKAAYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHNPKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNLDEIPDGEMPQVDHLVFVVHGIGPVCDLRFRSIIECVDDFRVVSLKLLRTHFKKSLDDGKVSRVEFLPVHWHSSLGGDATGVDRNIKKITLPSIGRFRHFTNETLLDILFYNSPTYCQTIVEKVGMEINHLHALFMSRNPDFKGGVSVAGHSLGSLILFDILSNQKDLNLSKCPGPLAVANGVVKQLHFQEKQMPEEPKLTLDESYDLVVENKEVLTLQETLEALSLSEYFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVEHKAAKLKKAASEKKAVAATSTKGQEQSAQKTKDMASLPSESNEPKRKLPVGACVSSVCVNYESFEVGAGQVSVAYNSLDFEPEIFFALGSPIAMFLTIRGVDRIDENYSLPTCKGFFNIYHPLDPVAYRLEPMIVPDLDLKAVLIPHHKGRKRLHLELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVANQIKEEEEKQVVEAEKVVESPDFSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTALLLLKEIYRTMNISPEQPQH", "length": 1000 }, "evidence": [ { "id": "A0A8C2MIY7", "url": "https://omabrowser.org/oma/group/A0A8C2MIY7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "COPII-coated ER to Golgi transport vesicle", "id": "GO:0030134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030134", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7" } ], "pmid": "" }, { "name": "phospholipase activity", "id": "GO:0004620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004620", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MIY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY7" }, { "id": "PS51043", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51043" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DDHD", "eco_id": "ECO_0000259", "start_pos": 776, "end_pos": 985, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 530, "end_pos": 532 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MIY9-1", "uniprot_ac": "A0A8C2MIY9", "uniprot_id": "A0A8C2MIY9_CRIGR", "mass": { "chemical_mass": 128337.0, "monoisotopic_mass": 128337.0 }, "refseq": { "ac": "XP_003500460", "name": "RNA-binding protein 6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500460" }, "gene_names": [ { "name": "Rbm6", "type": "recommended", "evidence": [ { "id": "A0A8C2MIY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9" } ] }, { "name": "Rbm6", "type": "synonym", "evidence": [ { "id": "XP_003500460", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500460" } ] } ], "protein_names": [ { "name": "RNA-binding protein 6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003500460", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500460" }, { "id": "A0A8C2MIY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613788.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500460", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500460" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rbm6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9", "locus": {} } ], "crossref": [ { "id": "cd12314", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12314", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12563", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12563", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755843", "url": "https://www.ncbi.nlm.nih.gov/gene/100755843", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755843", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755843", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RNIPHAD", "url": "https://omabrowser.org/oma/group/RNIPHAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MIY9", "url": "https://www.orthodb.org/?gene=A0A8C2MIY9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GXQ5", "url": "https://www.orthodb.org/?gene=A0A9J7GXQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13948", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13948", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13948:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13948:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500460", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500460", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MIY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MIY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWGDSRSANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHSGNFPGRDSLPFDFQGHSGPPFANVEEHSFSYGARDGPHGDYQGGEGPGHDFRGGDFSSSDFQSRDSAQLDFRNRDMHSGDFRDREGPPMDYRGGDGTPMDYRGRETPHMNYRDRDSHPIDFRSRDVPPSDFRGRGTYDLDFRGRDGSHADFRGRDLSDLDFRSRDQSRSDFRNRDVSDLDLRDKEGTQVDFRGRGSATTDLDFRSRDAAHSDFRGRHRSRTYQDFRGREVGPCMEFKDREMPPVDPKILDYIQPSTQEREHSGVNVNKREEPTHDHAMEMAAFGVQKGEFEHSETREGETQSGTFEHESPSDFQNSQSPVQDQDKPKLPGGEQQSSDAGLFKEEGDLDFLGRQDTDYRNIEYCDVDHRLPGSQIFGYGQNKSFPQGKMSRDAQQELQDQDYRTGPSEEKPNRLIRLSGVPKNATKEEILNAFRTSDGIPVKELQLKEYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSSCSFCKGPKEEVKQELVSYPQPQKTSIPVPSEKQPNQPRPADKEHEFRKREEGQESRSGHQKRDSERYFPHSRREGLTFRRDREKESWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPESPEEEESKEKKSTSQGKSSSKKETSKRDSKEKKDRGVTKFQESTSEGKSPPEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGGDSDYEEEEEEEQAPPVQLRTAQPQQREELTKKENEEDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKERGNDRREKLQSFDSPERKRIKYSRETDSDRNPVDKEDTDTNSKGGCAQQAAGWRKGTGLGYSHPGLGSSEETEGRMRGPGGAPGRTSKRQSNETYRDAVRRVMFARYKELD", "length": 1119, "header": "tr|A0A8C2MIY9-1|A0A8C2MIY9_CRIGR Isoform 1 of RNA-binding protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbm6 PE=4 SV=1 CANONICAL=A0A8C2MIY9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MIY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9/entry", "sequence": { "sequence": "MWGDSRSANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHSGNFPGRDSLPFDFQGHSGPPFANVEEHSFSYGARDGPHGDYQGGEGPGHDFRGGDFSSSDFQSRDSAQLDFRNRDMHSGDFRDREGPPMDYRGGDGTPMDYRGRETPHMNYRDRDSHPIDFRSRDVPPSDFRGRGTYDLDFRGRDGSHADFRGRDLSDLDFRSRDQSRSDFRNRDVSDLDLRDKEGTQVDFRGRGSATTDLDFRSRDAAHSDFRGRHRSRTYQDFRGREVGPCMEFKDREMPPVDPKILDYIQPSTQEREHSGVNVNKREEPTHDHAMEMAAFGVQKGEFEHSETREGETQSGTFEHESPSDFQNSQSPVQDQDKPKLPGGEQQSSDAGLFKEEGDLDFLGRQDTDYRNIEYCDVDHRLPGSQIFGYGQNKSFPQGKMSRDAQQELQDQDYRTGPSEEKPNRLIRLSGVPKNATKEEILNAFRTSDGIPVKELQLKEYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSSCSFCKGPKEEVKQELVSYPQPQKTSIPVPSEKQPNQPRPADKEHEFRKREEGQESRSGHQKRDSERYFPHSRREGLTFRRDREKESWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPESPEEEESKEKKSTSQGKSSSKKETSKRDSKEKKDRGVTKFQESTSEGKSPPEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGGDSDYEEEEEEEQAPPVQLRTAQPQQREELTKKENEEDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKERGNDRREKLQSFDSPERKRIKYSRETDSDRNPVDKEDTDTNSKGGCAQQAAGWRKGTGLGYSHPGLGSSEETEGRMRGPGGAPGRTSKRQSNETYRDAVRRVMFARYKELD", "length": 1119, "header": "tr|A0A8C2MIY9-1|A0A8C2MIY9_CRIGR Isoform 1 of RNA-binding protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbm6 PE=4 SV=1 CANONICAL=A0A8C2MIY9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXQ5/entry", "sequence": { "sequence": "MIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSSCSFCKGPKEEVKQELVSYPQPQKTSIPVPSEKQPNQPRPADKEHEFRKREEGQESRSGHQKRDSERYFPHSRREGLTFRRDREKESWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPESPEEEESKEKKSTSQGKSSSKKETSKRDSKEKKDRGVTKFQESTSEGKSPPEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGGDSDYEEEEEEEQAPPVQLRTAQPQQREELTKKENEEDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKERGNDRREKLQSFDSPERKRIKYSRETDSDRNPVDKEDTDTNSKGGCAQQAAGWRKGTGLGYSHPGLGSSEETEGRMRGPGGAPGRTSKRQSNETYRDAVRRVMFARYKELD", "length": 597, "header": "tr|A0A9J7GXQ5-1|A0A9J7GXQ5_CRIGR Computationally mapped isoform of RNA-binding protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rbm6 PE=4 SV=1 CANONICAL=A0A8C2MIY9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MIY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIY9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755843", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755843", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PAD2-1", "protein_name": "RNA binding motif protein 6", "gene_name": "RBM6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWGDHRQGNRTGSFRGSQEERFAPGWNRDYPPSLDSLAQERHSGNFSGRESLPFDIQALAGLLNPQFANREEPSFSFGARDGPRSDFRGGEGHHDFRGRDFPPSDFQSRDESQLDFRGREPPPSEYRGRDMYSGDFREREGPPMDFRGGDIPPVDYRNRETFRMNYRDREAHSMDYRGRDEPPSDFRGRGSFDLDFRGRDGSHSDFRARDVPELDYRGRDHSYSDFRNRDVPDLDFRGVGTSDLDFRNRNAPSSDFRNRHRSRSDQDFRSRDMPPPMDFSDREMPPVDQSLVDFRRNQSTIPLAEREGSGLNTGKREEPALGLERTPFGSQKGEFQHSEAPAREEESLGLGLKDNASHNFQNSRGPLPALQDQEEQPQTFANKQQQQQQLSGGEQQRSDSDLGLKGEDDLDFLGRQDTDYRNIEYRDVDHRLPACQLFDYEHGKSFSEGKPSKDSRPYKSLQDQDYRTCPEFVKPSKLIRLGGVPETATKDDILNAFRGPDGMPVKNLRLKDYSSGYDYRYVCVEFSLLEEAIGCMEANQGTLTIGGEEVTLEYTLCPEFWRCKRCKVCNVGYRSSCSYCKLPRDGNRAGSESKGGPEGEDASSEQEFTAETKLEKPEQELPVQPGSPKQPLQASDPAPQQECQPQEQEPRKRDEGRERRPSQEKRRDTDRHQELPSQREGEEATPQEGGGSRTIMLKRITRFTPPEVIVGLLAPYVRISTSNVRIMKNKAGRMGQTYGFIELDSHAEALRLLKILQNLDPPICIDGRTLEVNLATGRRRNDYGEHGDNSYYNQGRRGMRDRRGGESQRRTRAQSPSDVSTYIYDPETGNYYDPIAGTYYDPRTQREVTIDREPCSSPPENRRRRHESQERTSERKEPHSRDNRDKKEKGKNTPAKNEPGEERFFTEDVFKKPLPPSVKKDETAGLNDCGEEKFFAEDVFKKPLPPSVKKDESAARPKVVNPLIGLLGEYGGDSDNEEEEEEEEQAQWLPSPHPPAQREEQPRRAKAGDDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSNLHKQNLEIHMKIKRSEQELAYLEKREREGRYKDKGNDRREKFQQMDSPERKRFRYDRGPESDYDPRIDSNNKGNRMLQSTGWKKGFGHNQQGTTSPMEAENRKRGPGLGAQGRPNRRQSNETYRDAVRRVMFARYKELE", "length": 1180 }, "evidence": [ { "id": "A0A8C2MIY9", "url": "https://omabrowser.org/oma/group/A0A8C2MIY9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BC65-1", "protein_name": "RNA binding motif protein 6", "gene_name": "RBM6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MJ22-1", "uniprot_ac": "A0A8C2MJ22", "uniprot_id": "A0A8C2MJ22_CRIGR", "mass": { "chemical_mass": 19883.0, "monoisotopic_mass": 19883.0 }, "refseq": { "ac": "XP_016829429", "name": "kxDL motif-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829429" }, "gene_names": [ { "name": "LOC100757863", "type": "recommended", "evidence": [ { "id": "A0A8C2MJ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22" } ] }, { "name": "LOC100757863", "type": "synonym", "evidence": [ { "id": "XP_016829429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829429" } ] } ], "protein_names": [ { "name": "KxDL motif-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A8C2MJ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22/entry#names_and_taxonomy" } ] }, { "name": "kxDL motif-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_016829429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829429" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613716.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016829429", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829429" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ22", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757863", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22", "locus": {} } ], "crossref": [ { "id": "100757863", "url": "https://www.ncbi.nlm.nih.gov/gene/100757863", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019371", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019371", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MJ22", "url": "https://www.orthodb.org/?gene=A0A8C2MJ22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13511", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13511", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13511:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13511:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016829429", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829429", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJ22", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPPDSASRVFCGRFLSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFMHHTRTLVDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGTFLEDEDEDPIPPSITTTIATSEQSTGSCDTSPDTVSPSLSPGFEDLSHIRPGSPAINGHSHTDDEEETHGE", "length": 177, "header": "tr|A0A8C2MJ22-1|A0A8C2MJ22_CRIGR Isoform 1 of KxDL motif-containing protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100757863 PE=3 SV=1 CANONICAL=A0A8C2MJ22-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22/entry", "sequence": { "sequence": "MDPPDSASRVFCGRFLSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFMHHTRTLVDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGTFLEDEDEDPIPPSITTTIATSEQSTGSCDTSPDTVSPSLSPGFEDLSHIRPGSPAINGHSHTDDEEETHGE", "length": 177, "header": "tr|A0A8C2MJ22-1|A0A8C2MJ22_CRIGR Isoform 1 of KxDL motif-containing protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100757863 PE=3 SV=1 CANONICAL=A0A8C2MJ22-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ22", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MJ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ22" }, { "id": "PF10241", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10241" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KxDL", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 99, "start_aa": "Arg", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 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"XP_003509362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509362" } ] }, { "name": "T-complex protein 11-like protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2MJ24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 965 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614685.1) and transcript sequence (IACG01058426.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003509362.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509362", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509362" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766824", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24", "locus": {} } ], "crossref": [ { "id": "100766824", "url": "https://www.ncbi.nlm.nih.gov/gene/100766824", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766824", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766824", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MJ24", "url": "https://www.orthodb.org/?gene=A0A8C2MJ24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12832", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12832", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12832:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12832:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05794", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05794", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509362", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509362", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJ24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJ24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLNGEKQCVNEDQQSDSESSRFSQSMASPSDYECSRQSFTSDFSSKSSSPASTSPPRDVMFDVMAAAKNLSDMTLAHEIAVNENFQLKQTALPENSLAGQVKRVVHQAFWDVLEADLSAEPPQYEYAFRLFEEIREILLSFLTGGNRLHNQICEVLDIDLIRQQAEHSAVDIQGLANYVINIMGKMCAPVRDEDIRELKATTNIVEMLRQIFRVLDLMRMDMTNFVIRNIRPHIQHHLVEYERNKFQEILEETPNAFSQTTEWLKESIDEELLSETAVSPGTEQSPTPSLSPLLVLNNCYLKLLQWDYQTKVLPETLLTDGTRLQELTEKLNQLKMIACLSLITNNMVGAITEGLPELANRLKRISAVLLEGMNKETFNLKEALNSIGVQTCAEVNKALKERGSPTLNAEAQANLIGQFSSLGEKDNPVCTLMDKRIRLYMKSLLCLPSTQKSMPPMPGGLGVIHQELEVLGCQYANIVNLNKQVYGPFYANIFRKLLFQDEAVGKTDASLPTN", "length": 515, "header": "tr|A0A8C2MJ24-1|A0A8C2MJ24_CRIGR Isoform 1 of T-complex protein 11-like protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100766824 PE=3 SV=1 CANONICAL=A0A8C2MJ24-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJ24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24/entry", "sequence": { "sequence": "MPLNGEKQCVNEDQQSDSESSRFSQSMASPSDYECSRQSFTSDFSSKSSSPASTSPPRDVMFDVMAAAKNLSDMTLAHEIAVNENFQLKQTALPENSLAGQVKRVVHQAFWDVLEADLSAEPPQYEYAFRLFEEIREILLSFLTGGNRLHNQICEVLDIDLIRQQAEHSAVDIQGLANYVINIMGKMCAPVRDEDIRELKATTNIVEMLRQIFRVLDLMRMDMTNFVIRNIRPHIQHHLVEYERNKFQEILEETPNAFSQTTEWLKESIDEELLSETAVSPGTEQSPTPSLSPLLVLNNCYLKLLQWDYQTKVLPETLLTDGTRLQELTEKLNQLKMIACLSLITNNMVGAITEGLPELANRLKRISAVLLEGMNKETFNLKEALNSIGVQTCAEVNKALKERGSPTLNAEAQANLIGQFSSLGEKDNPVCTLMDKRIRLYMKSLLCLPSTQKSMPPMPGGLGVIHQELEVLGCQYANIVNLNKQVYGPFYANIFRKLLFQDEAVGKTDASLPTN", "length": 515, "header": "tr|A0A8C2MJ24-1|A0A8C2MJ24_CRIGR Isoform 1 of T-complex protein 11-like protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100766824 PE=3 SV=1 CANONICAL=A0A8C2MJ24-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 288, "start_aa": "Thr", "end_pos": 288, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr288", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766824", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766824", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ24" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 288 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { 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##RefSeq-Attributes-START## assembly gap :: added 94 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613801.1) and transcript sequence (IACG01006013.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003500704.2. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ41" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ41" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MJ97-1", "uniprot_ac": "A0A8C2MJ97", "uniprot_id": "A0A8C2MJ97_CRIGR", "mass": { "chemical_mass": 25059.0, "monoisotopic_mass": 25059.0 }, "refseq": { "ac": "XP_027252970", "name": "melanoregulin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252970" }, "gene_names": [ { "name": "Mreg", "type": "recommended", "evidence": [ { "id": "A0A8C2MJ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ] }, { "name": "Mreg", "type": "synonym", "evidence": [ { "id": "XP_027252970", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252970" } ] } ], "protein_names": [ { "name": "Melanoregulin isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MJ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97/entry#names_and_taxonomy" } ] }, { "name": "melanoregulin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027252970", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252970" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252970", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252970" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mreg", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97", "locus": {} } ], "crossref": [ { "id": "100756624", "url": "https://www.ncbi.nlm.nih.gov/gene/100756624", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756624", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756624", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MJ97", "url": "https://www.orthodb.org/?gene=A0A8C2MJ97", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34340", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34340", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34340:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34340:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15812", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15812", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252970", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252970", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJ97-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLRRWLRSACCCCPCRCLEEPARPEKEPLVSDSNLYSSFGATLERDDEKNLWSMPHDVSHTEADDDRILYNLIVIRNQQTKDSEEWQRLNYDIYSLRQIRREVRNRWRRILEDLGFQREADSLLSVTKLSTMSDSKNTRKAREMLLKLAEETTIFPASWELSERYLLVVDRLIALDAAEEFFKIASRTYPKKPGVPCLGDGQKKLHYLPFPSP", "length": 214, "header": "tr|A0A8C2MJ97-1|A0A8C2MJ97_CRIGR Isoform 1 of Melanoregulin isoform X2 OS=Cricetulus griseus OX=10029 GN=Mreg PE=4 SV=1 CANONICAL=A0A8C2MJ97-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJ97-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97/entry", "sequence": { "sequence": "MGLRRWLRSACCCCPCRCLEEPARPEKEPLVSDSNLYSSFGATLERDDEKNLWSMPHDVSHTEADDDRILYNLIVIRNQQTKDSEEWQRLNYDIYSLRQIRREVRNRWRRILEDLGFQREADSLLSVTKLSTMSDSKNTRKAREMLLKLAEETTIFPASWELSERYLLVVDRLIALDAAEEFFKIASRTYPKKPGVPCLGDGQKKLHYLPFPSP", "length": 214, "header": "tr|A0A8C2MJ97-1|A0A8C2MJ97_CRIGR Isoform 1 of Melanoregulin isoform X2 OS=Cricetulus griseus OX=10029 GN=Mreg PE=4 SV=1 CANONICAL=A0A8C2MJ97-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756624", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756624", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "phagosome maturation", "id": "GO:0090382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090382", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "pmid": "" }, { "name": "melanosome transport", "id": "GO:0032402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032402", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "pmid": "" }, { "name": "melanocyte differentiation", "id": "GO:0030318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030318", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "pmid": "" }, { "name": "minus-end-directed organelle transport along microtubule", "id": "GO:0072385", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072385", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJ97", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ97" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": 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This record is derived from a genomic sequence (NW_003614019.1) and transcript sequence (IACG01052602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007642728.1. 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"MAQHFSLAACDVVGFDLDHTLCRYNLPESARLIYNSFAQFLVKEKGYDKELLTLTPEDWDFCCKGLALDLEDGTFIKLAADGTVLRASHGTRMMTPEELVETYGKKDWRHCTTDRHCAANVDIPCCSGKCYFYDNYFDLPGALLCARVVDSLTKNRGQKTFDFWKDVVAGIQHNFKMSAFKENCGFFFPEIKRNLGKYVHRCPESVKRWLRQLKDAGKITMLITSSHSDYCKLLGTYILGKDFADLFDIVITNALKPGFFSHFPSQRPFHTLENDEEQEELPSLDKPGWYSQGNAAHLYELLKKMTNKPEPKVVYFGDSMHSDIFPAHHYSNWETVLILEELRGQEVKAEEAEPLEKRGKYEPPKVKPLNSLSNKWGSYFIDSVSRRGNAEDSLVYTWSSRRISTYSTIAIPSLEAIAELPLDYKFTRFSTNSSKTAGYYPLVHYTLYSQDTDSKIVFTEK", "length": 461, "header": "tr|A0A9J7FHS5-1|A0A9J7FHS5_CRIGR Computationally mapped isoform of 5'-nucleotidase domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Nt5dc1 PE=3 SV=1 CANONICAL=A0A8C2MJB2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A8C2MJB2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 433, "end_pos": 435 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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}, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MJD6-1", "uniprot_ac": "A0A8C2MJD6", "uniprot_id": 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274745", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274745" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJD6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJD6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slamf9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJD6", "locus": {} } ], "crossref": [ { "id": "cd16842", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16842", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103162812", "url": "https://www.ncbi.nlm.nih.gov/gene/103162812", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103162812", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103162812", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CRANNPI", "url": "https://omabrowser.org/oma/group/CRANNPI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MJD6", "url": "https://www.orthodb.org/?gene=A0A8C2MJD6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274745", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274745", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJD6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGALLWSLLLLLQEAKGFSGDDEDPEEVVAALQESISLSLEIPSNEEVKDIIWFSQKNLVTVVPGKEGTPAVIIVMDPRYQGRVGISESSYSLHISNLTWEDSGLYQAKVSLNTSQLSITKSYDLRVYRRLSKPHITVNFRISEEGACNISLMCSVERAGMDVTYTWLSPQDSANMSHEDAIISTSWRPGDRALSYICRASNPVSNSSSHLIPVGSFCADPGSPEKPSMSCLLAKGLILLFLLVILAVVLCVFQARKNYEMSRVRKLKRNRIKLRKKGKLGPSLD", "length": 285, "header": "tr|A0A8C2MJD6-1|A0A8C2MJD6_CRIGR Isoform 1 of SLAM family member 9 OS=Cricetulus griseus OX=10029 GN=Slamf9 PE=4 SV=1 CANONICAL=A0A8C2MJD6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJD6/entry", "sequence": { "sequence": "MGALLWSLLLLLQEAKGFSGDDEDPEEVVAALQESISLSLEIPSNEEVKDIIWFSQKNLVTVVPGKEGTPAVIIVMDPRYQGRVGISESSYSLHISNLTWEDSGLYQAKVSLNTSQLSITKSYDLRVYRRLSKPHITVNFRISEEGACNISLMCSVERAGMDVTYTWLSPQDSANMSHEDAIISTSWRPGDRALSYICRASNPVSNSSSHLIPVGSFCADPGSPEKPSMSCLLAKGLILLFLLVILAVVLCVFQARKNYEMSRVRKLKRNRIKLRKKGKLGPSLD", "length": 285, "header": "tr|A0A8C2MJD6-1|A0A8C2MJD6_CRIGR Isoform 1 of SLAM family member 9 OS=Cricetulus griseus OX=10029 GN=Slamf9 PE=4 SV=1 CANONICAL=A0A8C2MJD6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJD6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJD6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613904.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502601" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJH8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJH8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tpgs1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJH8", "locus": {} } ], "crossref": [ { "id": "cd22960", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22960", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762133", "url": "https://www.ncbi.nlm.nih.gov/gene/100762133", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762133", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762133", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FSDYIRQ", "url": "https://omabrowser.org/oma/group/FSDYIRQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MJH8", "url": "https://www.orthodb.org/?gene=A0A8C2MJH8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31932", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31932", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31932:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31932:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24480", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24480", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502601", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJH8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALPVPLPSAKMAAVEKRRLAVTPAASFADSGRTTVSQAAAAAESEEDFLRQVGVTEMLRAALLKVLETRPEEPIAFLAHYFENMGLRSPANGGAGEPPGQLLLQQQRLGRALWHLRLAHHSQRTAFNNNVSVAYECLSASGRKKKPGLDGRTYSELLKRVCRDGGAPEEVVAPLLRKIQCRDHEAVPLGIFRAGMLSCFVLLEFVARASALFQLLEDPGLAVADRRVGQAVLDTLEGALGAGDLAAAPTHYLEAGSRLGPDSLARALDRAATGRRPSAPMAREEFLEKAAALFIAKVKPVG", "length": 303, "header": "tr|A0A8C2MJH8-1|A0A8C2MJH8_CRIGR Isoform 1 of Tubulin polyglutamylase complex subunit 1 OS=Cricetulus griseus OX=10029 GN=Tpgs1 PE=4 SV=1 CANONICAL=A0A8C2MJH8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJH8/entry", "sequence": { "sequence": "MAALPVPLPSAKMAAVEKRRLAVTPAASFADSGRTTVSQAAAAAESEEDFLRQVGVTEMLRAALLKVLETRPEEPIAFLAHYFENMGLRSPANGGAGEPPGQLLLQQQRLGRALWHLRLAHHSQRTAFNNNVSVAYECLSASGRKKKPGLDGRTYSELLKRVCRDGGAPEEVVAPLLRKIQCRDHEAVPLGIFRAGMLSCFVLLEFVARASALFQLLEDPGLAVADRRVGQAVLDTLEGALGAGDLAAAPTHYLEAGSRLGPDSLARALDRAATGRRPSAPMAREEFLEKAAALFIAKVKPVG", "length": 303, "header": "tr|A0A8C2MJH8-1|A0A8C2MJH8_CRIGR Isoform 1 of Tubulin polyglutamylase complex subunit 1 OS=Cricetulus griseus OX=10029 GN=Tpgs1 PE=4 SV=1 CANONICAL=A0A8C2MJH8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 24, "start_aa": "Thr", "end_pos": 24, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr24", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJH8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJH8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762133", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762133", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1S0C9-1", "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATYEKRRAAVTPTAAAGSGLGDEAEFLLQADVTAMVREALLKVLEARPEEPVSFLADYFERLVLSSSGAAGEAAAELSGPMQRLSRALWYVRLAHHSHRTAFNNNISTAYEVLGAGGRRRRLGVDGRLYSELLRRICQHGDAPQEVAAELLRRVQCRDHEAVPFDVFRYGVLTCFVLLEFVTKARMLYDVLDSGAGVADKSVCQAVLCTLEEALGASGLSVPVRYLEAGSRLGPDCLALAMDRALQERKLSTTMSREEFLKKATALFVAKVKPVE", "length": 276 }, "evidence": [ { 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MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035299183", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299183" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJK3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hhatl", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK3", "locus": {} } ], "crossref": [ { "id": "100771282", "url": "https://www.ncbi.nlm.nih.gov/gene/100771282", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771282", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771282", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MJK3", "url": "https://www.orthodb.org/?gene=A0A8C2MJK3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13285", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13285", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13285:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13285:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03062", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03062", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035299183", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299183", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJK3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGIKTALPAAELGLYSLVLSGSLAYAGRGLLEASQGGAHRKAFRESVRPGWEYLGRKMDVADFEWVMWFTSFRNMIVFALSGHVLFAKLCTMVAPQLRSWMYAVYGVLAVVGTMGPWYLLLLLGHCVSLYVASLLGQPWLCLALGLASLASFKMDPLISWQSGFVTGNFDLQDILFHGGSGFTVLRCTSFALESCAHPDRRYSLADLVKYNFYLPFFFFGPIMTFDRFHAQVSQEPVRQEGELWRIRAQAGLSAAAIVAVDIFFHFFYILTIPSDLKFASRLPDSALAGLAYSNLVYDWVKAAVLFGVVNTVARLDHLDPPQPPKCITALYVFGETHFDRGINDWLCKYVYDHIGGDHSAVIPELAASVATFVVTTLWLGPCDIVYLWSVLNCFGLNFELWVQKLAEHGPLAQFEARLSEQMSRRVRALCGAVNFWAIIMYNLVSLNSLEFTELVARRLILTGFPQTTLAILFVTYCGVQLVKERERTLALEEEQRKDKEKPE", "length": 503, "header": "tr|A0A8C2MJK3-1|A0A8C2MJK3_CRIGR Isoform 1 of Protein-cysteine N-palmitoyltransferase HHAT-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Hhatl PE=3 SV=1 CANONICAL=A0A8C2MJK3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK3/entry", "sequence": { "sequence": "MGIKTALPAAELGLYSLVLSGSLAYAGRGLLEASQGGAHRKAFRESVRPGWEYLGRKMDVADFEWVMWFTSFRNMIVFALSGHVLFAKLCTMVAPQLRSWMYAVYGVLAVVGTMGPWYLLLLLGHCVSLYVASLLGQPWLCLALGLASLASFKMDPLISWQSGFVTGNFDLQDILFHGGSGFTVLRCTSFALESCAHPDRRYSLADLVKYNFYLPFFFFGPIMTFDRFHAQVSQEPVRQEGELWRIRAQAGLSAAAIVAVDIFFHFFYILTIPSDLKFASRLPDSALAGLAYSNLVYDWVKAAVLFGVVNTVARLDHLDPPQPPKCITALYVFGETHFDRGINDWLCKYVYDHIGGDHSAVIPELAASVATFVVTTLWLGPCDIVYLWSVLNCFGLNFELWVQKLAEHGPLAQFEARLSEQMSRRVRALCGAVNFWAIIMYNLVSLNSLEFTELVARRLILTGFPQTTLAILFVTYCGVQLVKERERTLALEEEQRKDKEKPE", "length": 503, "header": "tr|A0A8C2MJK3-1|A0A8C2MJK3_CRIGR Isoform 1 of Protein-cysteine N-palmitoyltransferase HHAT-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Hhatl PE=3 SV=1 CANONICAL=A0A8C2MJK3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A8C2MJK3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acyltransferase activity", "id": "GO:0016746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016746", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJK3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": 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This record is derived from a genomic sequence (NW_003613629.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649832", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649832" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJK4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sh3tc1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK4", "locus": {} } ], "crossref": [ { "id": "cd11885", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11885", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767341", "url": "https://www.ncbi.nlm.nih.gov/gene/100767341", "database": "GeneID", "categories": [ "Genome 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"A0A8C2MJK4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSSREEEATSEELSTMGQDLEEPPGGCSHGDQIHSVSVSLPIGQERAGPEEAVRSDVASPPSMAELAAETPSGRKAVFPTDLTLQLLAVRRKSGLRSPSLQQALRSRLRLLENDSREVARVLGELSARLLSIHSDQDRIVVTFKTFEEIWKFSTYHALGFTHHCLENLLVDQTFWLLSPSEEEETAILMYVSKEALKQTHKKLLTQEGPFFVRCPEHRVRMMMGPQGAGKGPQALRRASGVPLGVAILETNSSSPMPSTSSNVEAAEADPEPLTPFHQWTLRVPWDPIDESMDGPGTPDAQLMGLGLASAVGDFQGSGPEEMSFCVGDVIEIIGAQVPGLPWCVGRHVASGQVGFVRTGLVSMQGPASDLESAIFLSEEERSFFRSEGHFSDEDARRLLSRTSCTDVCTTCSLDWLEEAEGEQLEQQELSLPHLNPEPHETLHMVKDILERCKACPDHPEDPVSWSLGEVSNRVSSPDLEEPPFCLDPEVDWTDPEPLDSLLQVLNAPGYEAHFRGLYDISLPWLSTALCGFDDEEELAGCLAQARGVAKKVNLGMALARLCLLLGRLCARKLKLSQARVYFEEALGALEGSFGDLSLVAAVYTSLATVYLKQKNGEKCVQVAPKAAALLLGTPGHAYSTDTELLKYALRRAICGLSPQAEARACFLLARHYTHLKQPEEALPYLERLLRLNRDVGTPQASWPKDCYLLLADIYGRKCLPHLALSCLRVSSLWTRCSLASSLRSVDLVLRNAPGPNSQRRANHRLPTQIAYYLRKALASLTPGTGQALCGPLYASLAQLYSHHQQHNQAIAFMSQAAEADTAAGIYPVVDRLVALAWLHMLCGKNLVAMDILKSILDAAVANKDQECVMTNMVAMALKRTGRTRQAAEGYFRALHMAYSQGHLKSQAVVLANFGALCLQAGARSLAQHYLREAVGLFSQLPSSVCGRDFTQVLLWLGQLCTRRALHQQAKCYYEWAFLVAVEMDHLESQLQAVQKLCHFYSKVMPNEVRCVIYHEFQLALARRTADKVLEGQLLEAISQLYLSLGTERAYKSALDYTKRSLGIFIDLQQKEKEARAWLQAGKIYYILRQNELVDLYIQVAQNAALYTGDPKLGLELFEAAGDIFFNGTWEREKAVSFYRDRALPLAVTIGNQEAELRLCNKLVALLSALEAPQEGLEFAHEALALSITLGDRLNERVAYHRLATLHHQLGHGELAEHFFLKALSLCNSPLEFDEETLYYVKVYLVLGDIIFYDLKDPFDAAGYYQLALAAAVDLGHKKAQLKIYTRLATIYHHFLMDREMSLFFYQKARTFASELNLRRTNLVPQRFCGRTPWLAPGYPS", "length": 1341, "header": "tr|A0A8C2MJK4-1|A0A8C2MJK4_CRIGR Isoform 1 of SH3 domain and tetratricopeptide repeat-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Sh3tc1 PE=4 SV=1 CANONICAL=A0A8C2MJK4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK4/entry", "sequence": { "sequence": "MRSSREEEATSEELSTMGQDLEEPPGGCSHGDQIHSVSVSLPIGQERAGPEEAVRSDVASPPSMAELAAETPSGRKAVFPTDLTLQLLAVRRKSGLRSPSLQQALRSRLRLLENDSREVARVLGELSARLLSIHSDQDRIVVTFKTFEEIWKFSTYHALGFTHHCLENLLVDQTFWLLSPSEEEETAILMYVSKEALKQTHKKLLTQEGPFFVRCPEHRVRMMMGPQGAGKGPQALRRASGVPLGVAILETNSSSPMPSTSSNVEAAEADPEPLTPFHQWTLRVPWDPIDESMDGPGTPDAQLMGLGLASAVGDFQGSGPEEMSFCVGDVIEIIGAQVPGLPWCVGRHVASGQVGFVRTGLVSMQGPASDLESAIFLSEEERSFFRSEGHFSDEDARRLLSRTSCTDVCTTCSLDWLEEAEGEQLEQQELSLPHLNPEPHETLHMVKDILERCKACPDHPEDPVSWSLGEVSNRVSSPDLEEPPFCLDPEVDWTDPEPLDSLLQVLNAPGYEAHFRGLYDISLPWLSTALCGFDDEEELAGCLAQARGVAKKVNLGMALARLCLLLGRLCARKLKLSQARVYFEEALGALEGSFGDLSLVAAVYTSLATVYLKQKNGEKCVQVAPKAAALLLGTPGHAYSTDTELLKYALRRAICGLSPQAEARACFLLARHYTHLKQPEEALPYLERLLRLNRDVGTPQASWPKDCYLLLADIYGRKCLPHLALSCLRVSSLWTRCSLASSLRSVDLVLRNAPGPNSQRRANHRLPTQIAYYLRKALASLTPGTGQALCGPLYASLAQLYSHHQQHNQAIAFMSQAAEADTAAGIYPVVDRLVALAWLHMLCGKNLVAMDILKSILDAAVANKDQECVMTNMVAMALKRTGRTRQAAEGYFRALHMAYSQGHLKSQAVVLANFGALCLQAGARSLAQHYLREAVGLFSQLPSSVCGRDFTQVLLWLGQLCTRRALHQQAKCYYEWAFLVAVEMDHLESQLQAVQKLCHFYSKVMPNEVRCVIYHEFQLALARRTADKVLEGQLLEAISQLYLSLGTERAYKSALDYTKRSLGIFIDLQQKEKEARAWLQAGKIYYILRQNELVDLYIQVAQNAALYTGDPKLGLELFEAAGDIFFNGTWEREKAVSFYRDRALPLAVTIGNQEAELRLCNKLVALLSALEAPQEGLEFAHEALALSITLGDRLNERVAYHRLATLHHQLGHGELAEHFFLKALSLCNSPLEFDEETLYYVKVYLVLGDIIFYDLKDPFDAAGYYQLALAAAVDLGHKKAQLKIYTRLATIYHHFLMDREMSLFFYQKARTFASELNLRRTNLVPQRFCGRTPWLAPGYPS", "length": 1341, "header": "tr|A0A8C2MJK4-1|A0A8C2MJK4_CRIGR Isoform 1 of SH3 domain and tetratricopeptide repeat-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Sh3tc1 PE=4 SV=1 CANONICAL=A0A8C2MJK4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJK4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJK4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJK4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767341", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767341", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZLQ9-1", "protein_name": "SH3 domain and tetratricopeptide repeats 1", "gene_name": "Sh3tc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSFREEEATSEDLSTMGQGPEEPPGGCSLEDKIQSISMGLPTSQERTGPEEAEATTVRGDVAPPCGMVGQAAEPPSNQMAVYPTDLTLQLLAVRRKSGLRSPSLQQTLRSRLRLLENDSREVARVLGELSARLLSIHSDQDRIVVTFKTFEEIWKFSTYHALGFTHHCLENLLVDQTFWLLSPSEEEETAILIYVNKDALKQTHKSLLAQEGSFFVLCPDHCVRRTKEPQGAGKGPQTLRRASGVTLGVPVVETVSSSPTPSMSSKAEAVEAEPEPLTPFHQWTLRVPWDPIDESMSGPGTPDAQFMRFGLASAIADFQGSGPEEMSFSVGDVIEIVGAQVPGLPWCLGQHMASGQVGFVRTGLVRMQGPASDLESSIFLSEEERSFFRSEAHFSDEDARRLLCRTSGTDVCTTCSLDWLEEAEGEQLEQQEMSLPHLNPEPHESLHMVKNVLEKCKACPDHPEDPVSWSLGAVSSRVSSPDLEEPPFCLDPDDDWTDPEPPDSLLQVLSAPGYRAQFRSLYDISLPCLSTALYSFDDEEELAERLAQARGVAKKVDLGMALARLCLLLGRLCARKLKLSQARVYFEEALGALEGSFGDLSLVAAVYSSLATVYLKQKNGEKCVQLAPKAAALLLGTPGHSCSTDAELLKYALRRVVCGLSPQAEARACFLLARHYTHLKQPEEALPYLERLLRLNRDVGTPQASWPEDCYLLLADIYGRKCLPHLALSCLKVSSLWTRCSLAGSLRSVDLVLQNAPGPNSQRSTGHSLPSQIAHYLRQALASLPPGTGQTLRGPLYASLAQLYSYHQQYGQAIAFMSQAAEADTAAGVHPVVDRLVALAWLHLLCGKSLVAMDILKCVSDAAVANKDQECVMMNMVAMALKRMGRTRQAAEGYFRALHMAYSQGHLQSQAVVLANFGALCLQAGARSLAQHYLREAVGLFSQLPSGVCGRDFTQVLLWLGQLCTRRTLPQQAKCYYEWAFLVAVETDHLESQLQAVQKLCHFYSKVMPNEVRCVIYHEFQLALARKTADKVLEGQLLEAISQLYLSLGTERAYKSALDYTKRSLGIFIDLQQKEKEARAWLQAGKIYYILRQNELVDLYIQVAQNAALYTGDPKLGLELFEAAGDIFFNGTWEREKAMKVPCTHDRALPLAVTVGDQEVELRLCNKLVALLSALEAPQEGLEFAHEALALSITLGDRLNERVAYHRLATLHHRLGHGELAEHFFLKALSLCTSPLEFDEETLYYVKVYLVLGDIIFYELKDPFDAAGYYQLALAAAVDLGHKKAQLKIYTRLATIYHNFLMDREMSLFFYQKARTFASELNLRRTNLVPQHFCSRAPWLAPGYPS", "length": 1347 }, "evidence": [ { "id": "A0A8C2MJK4", "url": "https://omabrowser.org/oma/group/A0A8C2MJK4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NC54-1", "protein_name": "SH3 domain and tetratricopeptide repeats 1", "gene_name": "SH3TC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSLAAGGSSVSVLSSKVTTELGIPAPSLEGKQDSNLERKETEQGRCVPGWICETAVATVSAARGGDKTDTLQEQMDYPQNEKCMNVSSRTLLSQAENFPTDISLKLTMVRRKSGRPDPRLQRQLRGQLRLLENDSREVTAVFSELSARLLSIHSDQDLIVVTFKTFEEIWKFLTYHSLGFVNHCMENLFLDQSFWLYSQEEEETGIEVCINEKSLNLMYRSLLVQEGAFFVLCPDNLVRKITATDCEINTYFEAGAFTADVAGGSVDGDMTMPSNVPLEPLIPFHQWFLKVYSDPIDVAYKTESKSIRQVATGSCLAVMNYDSAVPEEISFQEGDEIEILGYLIECMEWFVGRHLFTGHVGFVKTSHVKLDLPGNKAADLDFLKAEELSFFPQEKNVEEVVHLLKQTSITDVCSVYRIDQLEEQEFQKTRECEIPCPHSNMATTSKKNGKIEEFVEKFKKLEVTQAEGPATERKESASSSHTEIFPSPEGPCFYIYQDDGQESDVFESLLLFLNNKEYESDFKNLYDFSYTFINSMFYGFSEEDELLSFFSVARELAKKAGMSWALARLCFLLGRLSVKKVKFSQARVYFEEALGAVTGGFTDLYFVIALYTNLTVIYLTQKNKEKCSHVFDKATSLLMGIPNHICSADLESDILKHALKRTILSQNKHAEARACFLLAKHYTARKQHEEALPFLERLQLLFNDLGLQNNLSKNCYFNLAESYNEKCLPHIVLSCIKVSSSQNSSTLMDSLKRIDLVIKNAPKLYGLRKLRQILPSQIAPYLTQALSSAFTNEQQGLCSTIYLSLAKLYSHHKQYGKAIIYMMKALDSDTSAKPEETINYLVSLAWLYILYRQYDVAATILNAVVDSSGSNPQQLGVAYNMLAIALKRTNNTKKAVESCYKALRLSEEANMTHNQAISLANFGMLCLHAAAGKLAEHYYIKAVKLFAKLPSMDCGQEFIQTLLQLGRYYVNRTQREKGRFYYEWAFLVAMEISHLESQLQAIKLLCQFYSTVVPNEAQCVIYNEYQLSLARKMSNKVLEGQILETISQLYLSLGTERAYRSALEYTKRSLGIFIDLQKKEREAYAWLRAGKIYYILRQNELVDLYIQVAQDAALCTGDPNLAMELFEAAGDIFFNGKWEKEKAVPFYRDRALPLAVESGNKNTELRLCNKLVELLVNLKVYEESMEYAKASLILSVNLGNQLNERIAYHRLAAIHHHLGHCELAEHFYLKALSLCSSPLEFEEETLYYVKVYLNLGDIIFYDLKDPFDAAGYYQLALAAAMDLGNKKAQLKIYTRLAIIYHNFLVDREMSLFFYQKARTFATELNVRRINLAPDQCYKSL", "length": 1341 }, "evidence": [ { "id": "A0A8C2MJK4", "url": "https://omabrowser.org/oma/group/A0A8C2MJK4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1QHY2-1", "protein_name": "SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1", "gene_name": "sh3tc1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSAAARRNSSKTGNGVEPDPDRVRTLRRELSNEYTRNELDNIMESSSRDYRISRGSFKGTPGASDDNVPTVLAMQLTMVEGPDRLPADENTQEVLCRKLCVLEADLSGVVTLISELSAHFVSIYSEERTIFITFKTIDDIWRFSTYYRMGFLGQCMENLLMDQEFWLTSLDHHSGIEISIKEETLNLMYKGFLMQEGSFFGCCTANQMFDSSTSGKDLYLEKGDIALFEPPFLGSGWTVLSLAEGSRGTKAKPALEPVTPFHEWFLKSCPETVLVGGGKDTIDLPFQIAVGVCETIEDYDADGPDELSFQTGERIIIQGLLVACFEWFMGQSEKTGDTGLVKTRLVKATGSFCESSDMFLKDEDRQIVTLDHEQIKEETLSLLKKTCQCDVGTNYKLDVAKEISGSVQSKSHQTEVSNLKQKVSHVLSEAQETQRNEVSALIINHQKEKQRNDTEVSQDTPRFSVCSDKEGSSPDEHHALLSFLSSREHQPEFTLLYRAYPEFLMTHFEGHSDEEDIVTYLGIARELARKKRVSWAQSRICFLLGQLCAGRSKFSQARVYYEEALNVPRDSFSDMLLLSALYSNLALIYLTQKNHEKFFALSERFSALLMAVPDCLFGCEDPEVLKYVLKKAVLAKSQLAEARACFLLAKLHLKIKDAVSVVPFIERLLILADELPEVCDEAMCHVSLVLARLYSEQGLPRLAESCARRASLQVGVTVSHCLCGVSLLLENAPELHGVSIPTQVAPFLTRAAALAPLHNDPTLVHIHALCLSWLFHRHNMPERAVRYMCAILEHSSMSSIGKSDATTAFIWLAWLYICNQQPGTALEVLDAVLASLPEHCTTHLEGVVYNMRAISYRHSADIRQAAESYQAAIEICEEFEDRHNWAVALANFGFMCLQVKAKRLAEENLCQSMELFSGLEDEGHELSFILVLLQLGRHFISQGNSESGKIYYEWALLIATYIDNIESQLHTTRHLCELYEDVCPDEAQCIIYNEHQLNLLQRIGDKSSEAEILEKISQLYLNLATEKANRAALDYTKRSLAIFIDLGKKRKEAHAWLRAGKIYHILQQTELVDLYVQVAQDMALNTGDTLFTLEMLEAAGDVFFNSSQDRDKAICFYRDRALPIAVKTSSVGSQLRLCNKLSELLLQLGQSSEALEFAQTALDISVSLADRLNERVAFHRLATLYHCLGQFEMAEHHFLKALSLCPSPLQYDEEALYYVRVYQTLGDIIFYDVKDPFDAAGYYHLALAAAMDLGNKRSQLQLCTRLATIYHNFLMDRELSLFFYQRARVFANDLHIRRINLAPDYSFRSTSQYKHTITGAAR", "length": 1322 }, "evidence": [ { "id": "A0A8C2MJK4", "url": "https://omabrowser.org/oma/group/A0A8C2MJK4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3MZW4-1", "protein_name": "SH3 domain and tetratricopeptide repeats 1", "gene_name": "SH3TC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCAFLPGQASRGRDHREGPEQEQRQRSAWHAEPLAVRPPSAMEGPEEPAPRGNGPAGPWGGSGDHGVREVAKSTSVSWERPRPEEAKATVRGDLTLQLLAVRRKSGLPDPNLQQALRGQLRLLENESCEVARTLGELSARLLSIHSDQDRLVVTFKTFEEIWKFSTYHALGFTHHCLENLLMDQAFWLLEPDEDQETAVRVQVDAEALRLAYESLLVQEGPFFVLCPDHHVRVRNGPQPFRRPPRGPQADAATAVDSPAPSPGTSSEAEGAAAAAPEPLIPFHQWALRVPKDSVNDPLGGPVAPDVQLMAMGPALAVADCQGSGPEEMTFRSGDRIEILGAQVPGLPWCLGRHTASGQVGFVRTSLINVQGQASDLENVIFLSEEERSFFSREGHFSEEEARQLLRRTSSTNVCTMYRLDTSEEAETQQQQEEQEMSPPCLNPEPQEILQTVKNVLKQCKSCRGCPEEPGSPGVHRASSGASLPDTEEPFFCLDTGDDWADPEALGSQLLFLDSPGFQAGFQGLYDLSPPTLSSVFGGFTDEEELVRRLAEARGVAKKAGLPMALARLCFLLGRLCVRQLKLSQARVYFEEALGVLGGRFGDLVLVAAVYTSLASVHLRQKNKEKCAQVVPKALALLLGTPGHVGSSEADSSLLTLALRRAISSRSPQAEARACFLLAKHHARLKQPEEAMPFLERLLLLLPEAAGTPGTSWPMDCYLLLASIYSQRCLPHLALSCIRVASLRAQGSLGSALRSAALVLQNSPRLPLLPAQLAHYLRRALATLASGSGQALHGPVYASLAQLYSQHGWQGRAIAFMAQAVETDARLGGCTVVDRLVALAWLHVLHRQSPAALGILESLLEAAVATPDQEGLITNMMAIALKRTGRTRRAAESYYRALRVARRLSRPQNEAVVLANFGALCLQAGAGGLAQHYLLEAVKLFSRLPSREGSPDFTRVLLRLGDLCTRRALARQAKCYYEWAFLVAVEMDHWESQLLAVQRLCHFYSAVVPNEARCVVYHEFQLSLARRVNDKVLEGQLLETISQLYLSLGTERAYRSALEYTKRSLGVFIDLLKKDKEAHAWLQAGKIYYVLRQSELVDLYIQAAQNAALYTGDPGLGLQLFEEAGDIFFNGTWDREKAVSFYRDRALPLAVSTGSREAELRLCNKLSALLAETEAPQEGLEFAHTALALSLTLGDQLNQRVACHRLAALHHRLGHGELAEHFYLKALSLCTSPLEFDEETLYYVKVYLALGNIIFYDLKDPLDAAGYYQLALAAAMGLGSKRAQMKLCARLASIYHHSLLDRETSLFFYQKARTFATELSVRRGRLAPGPPS", "length": 1331 }, "evidence": [ { "id": "A0A8C2MJK4", "url": "https://omabrowser.org/oma/group/A0A8C2MJK4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9F6-1", "protein_name": "SH3 domain and tetratricopeptide repeats 1", "gene_name": "Sh3tc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRSFREEEEEATSEELFTMGRGPEEPRGSCSPEDQIQSVSMGLPTGQERTGSAEAEATVRGDVAPPRIVVGLAAEPPPSQMTVYPTDLTLQLLAVRRKSGLRSPSLQQALRSRLRLLENDSREVARVLGELSARLLSIHSDQDRIVVTFKTFEEIWKFSTYHALGFTHHCLENLLVDQTFWLLSPSEEEETAILMYVNKDALKQTHKNLLTQEGSIFVLCPDHRVRRTIGPKGAGKGPQTLRRASGVPLGVAILETDSSSPTPNMSSNVEAAEAEPEPLTPFHQWTLRVPWDPIDESMSGPGTPDAQLMRFGLASAIADFQGSGPEEMSFSVGDVIEILGAQVPGLPWCVGRHMASGQVGFVRTGLVSMQGPASDLESAIFLSEEERSFFRSEGHFSDEDARRLLSRTSGTDVCTTCSLDWLEEAEGEQLEQREMSLPHLNPEPHGTLQMVKNILEKCKACPDHPEAPVSWSLGGVSRRASSLDLEEPRFCLDPEDDWTDPEPLDSLLQVLNAPGYGAHFRSLYDISLPWLSTALYGFDDEEELAERLAQARGVAKKVDLSMALARLCLLLGRLCARKLKLSQARVYFEEALGALEGSFGDLSLVAAVYSSLTTVYLKQKNAEKCVQVAPKAAALLLGTPGHSCNADAELLKYALRRVICGLSPQAEARACFLLARHYTHLKQPEEALPYLERLLRLNRDAGSPQASWPEDCYLLLADIYGRKCLPHLALSCLRVSSLWTRCSLPGSLRSVDLVLQNVPGPNSQRRAGHSLPSQIAYYLRQALASLAPGTGQALRGPLYASLAQLYSHHQQYSQAIAFMSQAAEADTAAGVHPVVDRLVALAWLHMLCGNSLVAMDILKCISDAAVANKDQECVMMNMVAMALKRMGRTRQAAEGYFRALHMAYAQGHLQSQAVVLANFGALCLQAGARSLAQHYLREAVGLFSQVPSGVCGRDFTQVLLWLGQLCTRRALPQQAKCYYEWAFLVAVETDHLESQLQAVQKLCLFYSKVMPNEVRCVIYHEFQLALARKTANKVLEGQLLEAISQLYLSLGTERAYKSALDYTKRSLGIFIDLQQKEKEARAWLQAGKIYYILRQNELVDLYIQVAQNAALYTGDPKLGLELFEAAGDIFFNGTWEREKAVSFYRDRALPLAVTVGDQEVELRLCNKLVALLSALEAPQEGLEFAHEALALSITLGDRLNERVAYHRLATLHHRLGHGELAEHFFLKALSLCSSPLEFDEETLYYVKVYLVLGDIIFYDLKDPFDAAGYYQLALAAAVDLGHKKAQLKIYTRLATIYHHFLVDREMSLFFYQKARTFASELNLRRTNLVPQRFCGRAPWLAPGHPS", "length": 1346 }, "evidence": [ { "id": "A0A8C2MJK4", "url": "https://omabrowser.org/oma/group/A0A8C2MJK4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TE82-1", "protein_name": "SH3 domain and tetratricopeptide repeat-containing protein 1", "gene_name": "SH3TC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MENLPAVTTEEPTPMGRGPVGPSGGGSTRDQVRTVVMRPSVSWEKAGPEEAKAPVRGDEAPPARVAGPAAGTPPCQMGVYPTDLTLQLLAVRRKSRLRDPGLQQTLRGQLRLLENDSREMARVLGELSARLLSIHSDQDRIVVTFKTFEEIWKFSTYHALGFTHHCLANLLMDQAFWLLLPSEEEETAIQVHVDENALRLTHESLLIQEGPFFVLCPDHHVRVMTGPRDAGNGPQALRQASGAPQGEAAPETDSSPPSPSVSSEEVAVAAAPEPLIPFHQWALRIPQDPIDDAMGGPVMPGNPLMAVGLASALADFQGSGPEEMTFRGGDLIEILGAQVPSLPWCVGRHAASGRVGFVRSSLISMQGPVSELESAIFLNEEEKSFFSEGCFSEEDARQLLRRMSGTDVCSVYSLDSVEEAETEQPQEKEIPPPCLSLEPQETLQKVKNVLEQCKTCPGCPQEPASWGLCAASSDVSLQDPEEPSFCLEAEDDWEDPEALSSLLLFLNAPGYKASFRGLYDVALPWLSSVFRSFSDEEELTGRLAQARGAAKKAGLLMALARLCFLLGRLCSRRLKLSQARVYFEEALGALEGSFGDLFLVVAVYANLASIYRKQKNREKCAQVVPKAMALLLGTPDHICSTEAEGELLQLALRRAVGGQSLQAEARACFLLARHHVHLKQPEEALPFLERLLLLHRDSGAPEAAWLSDCYLLLADIYSRKCLPHLVLSCVKVASLRTRGSLAGSLRSVNLVLQNAPQPHSLPAQTSHYLRQALASLTPGTGQALRGPLYTSLAQLYSHHGCHGPAITFMTQAVEASAIAGVRAIVDHLVALAWLHVLHGQSPVALDILQSVRDAVVASEDQEGVIANMVAVALKRTGRTRQAAESYYRALRVARDLGQQRNQAVGLANFGALCLHAGASRLAQHYLLEAVRLFSRLPLGECGRDFTHVLLQLGHLCTRQGPAQQGKGYYEWALLVAVEMGHVESQLRAVQRLCHFYSAVMPSEAQCVIYHELQLSLACKVADKVLEGQLLETISQLYLSLGTERAYKSALDYTKRSLGIFIDLQKKEKEAHAWLQAGKIYYILRQSELVDLYIQVAQNVALYTGDPNLGLELFEAAGDIFFDGAWEREKAVSFYRDRALPLAVTTGNRKAELRLCNKLVALLATLEEPQEGLEFAHMALALSITLGDRLNERVAYHRLAALQHRLGHGELAEHFYLKALSLCNSPLEFDEETLYYVKVYLVLGDIIFYDLKDPFDAAGYYQLALAAAVDLGNKKAQLKIYTRLATIYHNFLLDREKSLFFYQKARTFATELNVRRVNLPPLPLCGWAPWLAPSHPR", 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266743", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266743" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJP4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJP4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dipk2a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJP4", "locus": {} } ], "crossref": [ { "id": "100767713", "url": "https://www.ncbi.nlm.nih.gov/gene/100767713", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767713", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767713", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MJP4", "url": "https://www.orthodb.org/?gene=A0A8C2MJP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32073:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32073:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12260", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12260", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266743", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266743", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MJP4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRLVPLKLGRLSRALKLAALGSLLVLMLLHSPSLLASWQRNELADRRFLQLNKCPACFGTSWCRRFLNGQVGFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLVRRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARVTVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELRGYLAQLSHNVR", "length": 430, "header": "tr|A0A8C2MJP4-1|A0A8C2MJP4_CRIGR Isoform 1 of Divergent protein kinase domain 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Dipk2a PE=3 SV=1 CANONICAL=A0A8C2MJP4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJP4/entry", "sequence": { "sequence": "MWRLVPLKLGRLSRALKLAALGSLLVLMLLHSPSLLASWQRNELADRRFLQLNKCPACFGTSWCRRFLNGQVGFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLVRRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARVTVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELRGYLAQLSHNVR", "length": 430, "header": "tr|A0A8C2MJP4-1|A0A8C2MJP4_CRIGR Isoform 1 of Divergent protein kinase domain 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Dipk2a PE=3 SV=1 CANONICAL=A0A8C2MJP4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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} ], "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEVCLKSFGFSSTLGIYHQTHSGENFYDYKECGKASVYHSSLYTHGGTHTVRKCYECNQCGKVLSSSSSLQRHERIHTGERPYKCNQCGKALSSSTSLQRHERIHTGERPYKCNQCGKAFRCHSALQLHERIHTGEKPYECQQCGKAFTCHSYLRLHERTHTGEKPYECKQCGKAFRCQTSYHRHKIIHGGETFYECKQCSRLFIYPSLLQMHERTHTSERPYKCKQCGKSFLYPSLLQMHERTHTGEKPYECKECGTAFRHHSSLRLHERTHTGEKPYECQQCGKAFTRHTSLRLHEITHTGEKPYKCKECGKAFRHHSSLRLHGRIHSGEKPYECKQCDKAFIRYSYLRLHERTHTGEKPYECKQCGKAFSRHSSFQRHKSIHAVESPFECQQYLIPLSLFPPNTSDNAYW", "length": 520, "header": "tr|A0A8C2MJY0-1|A0A8C2MJY0_CRIGR Isoform 1 of Zinc finger protein 709 isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=3 SV=1 CANONICAL=A0A8C2MJY0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEVCLKSFGFSSTLGIYHQTHSGENFYDYKECGKASVYHSSLYTHGGTHTVRKCYECNQCGKVLSSSSSLQRHERIHTGERPYKCNQCGKALSSSTSLQRHERIHTGERPYKCNQCGKAFRCHSALQLHERIHTGEKPYECQQCGKAFTCHSYLRLHERTHTGEKPYECKQCGKAFRCQTSYHRHKIIHGGETFYECKQCSRLFIYPSLLQMHERTHTSERPYKCKQCGKSFLYPSLLQMHERTHTGEKPYECKECGTAFRHHSSLRLHERTHTGEKPYECQQCGKAFTRHTSLRLHEITHTGEKPYKCKECGKAFRHHSSLRLHGRIHSGEKPYECKQCDKAFIRYSYLRLHERTHTGEKPYECKQCGKAFSRHSSFQRHKSIHAVESPFECQQYLIPLSLFPPNTSDNAYW", "length": 520, "header": "tr|A0A8C2MJY0-1|A0A8C2MJY0_CRIGR Isoform 1 of Zinc finger protein 709 isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=3 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4N9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N9/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEERMLVCNLFVQPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAGFLCVALAVLDLTV", "length": 170, "header": "tr|A0A9J7F4N9-1|A0A9J7F4N9_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X17 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H829-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H829/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEASVSFEDVAVHFTQEEWALLDPSQKSLYRDVMLETCRNLAAIGNKWEKENVADCYRIPGRNLRTSVLETPHESTEDGQDEETMMWIANLHSSVAVFPGLTSCEPKVCGEASTCPSLSSRHTTSYPPYKLHEHEECGAKQYDLSSLTSFQRCMGAHTGNGPCECEVCLKASCFPNSLGINQETHVGKTPHQYKECGKASYTYRETHTMGKLYECNICGKTLSSSTKLQRHEIIHTERLYECTYCGKAFRNSKYLRLHERIHTGEKPYECKQCGKAFRFPGSLPLHERIHTGEKPYECKQCGKAFRFPGSLTLHEKIHTGEKPYECKQCGKAFGRHYHLQLHENIHTGEKPYGCKQCGKAFRRHSHLQRHERIHAGEKPYECK", "length": 490, "header": "tr|A0A9J7H829-1|A0A9J7H829_CRIGR Computationally mapped isoform of Zinc finger protein 709 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=3 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8U6/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAAPESSWHLFGMVACGSSVILMRPLCKKVSALT", "length": 177, "header": "tr|A0A9J7H8U6-1|A0A9J7H8U6_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X16 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9Y0/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAGFLCVALAVLDLTV", "length": 159, "header": "tr|A0A9J7H9Y0-1|A0A9J7H9Y0_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X19 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC71/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAGLCITFVPGAWGGQKRVLDLLELELWIVVSCHMYSRNQTQSSELP", "length": 190, "header": "tr|A0A9J7HC71-1|A0A9J7HC71_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X14 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAR9/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEERMLVCNLFVQPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAAPESSWHLFGMVACGSSVILMRPLCKKVSALT", "length": 188, "header": "tr|A0A9J7JAR9-1|A0A9J7JAR9_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X15 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAS3/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEERMLVCNLFVQPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAGLCITFVPGAWGGQKRVLDLLELELWIVVSCHMYSRNQTQSSELP", "length": 201, "header": "tr|A0A9J7JAS3-1|A0A9J7JAS3_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X13 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2V8/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAGLSEL", "length": 150, "header": "tr|A0A9J7K2V8-1|A0A9J7K2V8_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X20 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAM5/entry", "sequence": { "sequence": "MDLVSFEDVAVHFTQEEWTLLDPSQKSLYRDVMLETCRNLAAIGYIWEEQNIEDDCKNFGRYQRHLTSHSEYMPYEHEEYGNTPYDSSSLTSIQGYMAAHTVNGPCECEERMLVCNLFVQPRDLSAARDVRPLKRQQCATAWAQRLSDQGVRGDTAGLSEL", "length": 161, "header": "tr|A0A9J7KAM5-1|A0A9J7KAM5_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X18 OS=Cricetulus griseus OX=10029 GN=LOC100762310 PE=4 SV=1 CANONICAL=A0A8C2MJY0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MJY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJY0" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027283675.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283675", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283675" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MK99", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Efcab3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99", "locus": {} } ], "crossref": [ { "id": "100751732", "url": "https://www.ncbi.nlm.nih.gov/gene/100751732", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751732", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751732", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AYMNRNT", "url": "https://omabrowser.org/oma/group/AYMNRNT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MK99", "url": "https://www.orthodb.org/?gene=A0A8C2MK99", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22656", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22656", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22656:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22656:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283675", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283675", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MK99", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MK99-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVSGIKTTLKLKPLRAPIFHRRDIDFRGSLLGQVYHKESKLNPSQLEAFRNAYSFFIRDKTGCIDSHGLMATLAKLGMNLTTYDIYNELKCADIDRDGKINFSDFIEVLTDKKLFLKAVVPERKLCLDLANNPGILLFEILSKLVETSSLNRRDIIELVSYFRKKFRESYTEILSSPYSKRGFKADVCTPPRSSTAAFANSARVSIMKEKDLYKFLEALKRCDLPSGSPYSKIPIFPLFPDLDSTVMGRPFKDIQKLETLKRKEPLSFFEDYFFHKRDWKAQAATVKPIKSASGYSDDILAIDQLFKKKQHWTVADAVAIKQHVKRATDTYNLGIALEHRKEMLNLWKKIRGDLIGIETNNESFYNTFSTYTWSWNVCQELLSAKDLRLHDAYMNRSSSGNSRLSTPSDLSECDPETGRKRRWKGFRGFRQ", "length": 432, "header": "tr|A0A8C2MK99-1|A0A8C2MK99_CRIGR Isoform 1 of EF-hand calcium-binding domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Efcab3 PE=4 SV=1 CANONICAL=A0A8C2MK99-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MK99-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99/entry", "sequence": { "sequence": "MAVSGIKTTLKLKPLRAPIFHRRDIDFRGSLLGQVYHKESKLNPSQLEAFRNAYSFFIRDKTGCIDSHGLMATLAKLGMNLTTYDIYNELKCADIDRDGKINFSDFIEVLTDKKLFLKAVVPERKLCLDLANNPGILLFEILSKLVETSSLNRRDIIELVSYFRKKFRESYTEILSSPYSKRGFKADVCTPPRSSTAAFANSARVSIMKEKDLYKFLEALKRCDLPSGSPYSKIPIFPLFPDLDSTVMGRPFKDIQKLETLKRKEPLSFFEDYFFHKRDWKAQAATVKPIKSASGYSDDILAIDQLFKKKQHWTVADAVAIKQHVKRATDTYNLGIALEHRKEMLNLWKKIRGDLIGIETNNESFYNTFSTYTWSWNVCQELLSAKDLRLHDAYMNRSSSGNSRLSTPSDLSECDPETGRKRRWKGFRGFRQ", "length": 432, "header": "tr|A0A8C2MK99-1|A0A8C2MK99_CRIGR Isoform 1 of EF-hand calcium-binding domain-containing protein 3 OS=Cricetulus griseus OX=10029 GN=Efcab3 PE=4 SV=1 CANONICAL=A0A8C2MK99-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MK99", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MK99", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751732", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751732", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TVW9-1", "protein_name": "EF-hand calcium binding domain 3", "gene_name": "EFCAB3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNNLPVDKGKVYQKRLLNGIKFLKGGKIDSSKVYTILENMDMNLTEKELKDLIQNLPVDVNGKVDLEKVMNEVKPFSGDRVDTSKLENVLGNLGIKLTSNERLNLLETLPVNADGKVYQKRLMKGIKSLKRGNIDVNKLDTFLESMGIKITEEEFMDLIEKLPYDDEEDIKVDTVMKELSTVLGKQINVSDLKNALKDMKVEVTDKEYLNLVKTLPVDGGKIDMTNLVTFLENMGIELSHKELEDFSQNLPVDVDGKVDLKNVTLSMKDFTGEKINASDLKNVLGDMGIEVNDKECLELLKLLPIDGDKKVFQNRLLAALKSFKGGKVDVNNLNPVLGSMRIKLRNKELKSVVEKQPIDADGNVPLKKVMSDIKAVTGEKINVEDLKNILEGFGIEFTPKEYSELVKNLPVDDDGNIYENRLLDGVKSFNGGKVDVSNLENVLGNMKIKFPDNKLKDLAQNLPVDVFGKTDLHKLLKEIKKITGEKVEAKDIQKTLRNLGIELTNREIWELLKILPFADDKKVEKNDLLNHIKAFPGGKCHVSKLETILENLGYDLENEEVEDLRNHLPVDDEKVKPNTLMENVESFKGAKINADEVDGVLKNIGIELTPKERWKLLKTLPLTYDRKYYQKRLLQGLKTFQGGYVLENKLGTTLTNLNYELENKELNDLRNYLEIDNNGKVPLNSLMNTASLFSGNKINAKDTQFYLENIGIELTKSESEELLDALPLDENQMVYKNRLMDGVKKYRGGKVNIDKIDDALKNLGFPLDEEDIEELCSHLPIDVERRVKLDRLLDEVQELLGEVLDHNDLGNLLKDIGLRDQLKENSVLRKSLPLDAAGKLYKHKLLDSIKSLKGVDLNVNKLDSFMENMGFKIEEEEHKDLLNNLPMDDEGKVDVSVVMDEGNFFTGEKVDNSNLENFLENMGIELTEDKGMELLNNLPVDAKRRVYMNRLMKELRSLEGTKVSSDKVDICLKNMGIELTEEEIQELKDHLPVDDNEKIDLNVLTDKVKNITGEKIHTEDLKNVLKNMGIEITKKEHKKLIKTLPVSADKKVFKKELLRGVKSFKGGKVTVSDLSNVLQNTGFKLEAKEIQDLQTHLPITEDEEVGLDVLMDAANTFTGDKVEASNFKTVLGNMGLQLTEKEQFLLSKTLPISRDGKVYKKRLLNSVKPLKGKKISVNKLDTLMKNMGIQPEKEDYEDFLTHLPVDETQMVDLDVAMDDAKAFIGEKVTVSDLDNVMRRMGLALTTEEQKELLKTLPVHADGKVFKNRLLKSVKALKAPRVKIKKLESFVENMGVKLKDEELEELMTQLSADGNSTVGLNDLMDAISYIKGEVIDIPDLDNFLMSKGIELNEEEMKKLMPHLIFNEHGKVKVHSIMDGLKKIKRMGSLQKLMKITDDTKDRVTGPMAVSEIKAKFKLNPLTKVPNFHSRRDKDLPGLLPCQLQHKERKLSPSQMRAFQDAYNFFNKDKTGCIDLHGMMCTLAKLGMNLTKHDVHNELRCADIDQDGKVNFSDFLKVLTDKNRFLKAVVPEKGTCLDLAGNPGILLFEILSKLIETSALPKKAISEIVSYFRRKFQETTSGMVWSPDTTGYGKRRFKPDICTPPSSSTAAFANAARIAIMKEKDLFKFLDELKKCNPPSDSPYSKIPIFPLFPNVDGVVMGKPFKDIQKLEMLKRKEPLNFFENYFFHKKDWKTQAANIKPVDPTSGYSTDILTIDQMLKRKQNWTVADAAAIKPHVKRATETYNLGIALEHRKQMLNLWRKIRGDLIGIESKNESFYDTFSTYTWSWNVCQELLSPKDLKLYDAHVNRNALHNSVFSSSSDISECDTDTGRKRKRKGFKGFRQ", "length": 1843 }, "evidence": [ { "id": "A0A8C2MK99", "url": "https://omabrowser.org/oma/group/A0A8C2MK99/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66HC0-1", "protein_name": "EF-hand calcium-binding domain-containing protein 3", "gene_name": "Efcab3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAISGFKGTLKLKPLKTPVFYKRDKDFRGYFSGHLQHKETKLSPAQLEAFRNAYNFFTKDRTGCIDSHGLMSTVAKLGMNLNAYDIYNELKCADRDRDGKINFSDFIDVLTDKKLFLKAVVPEKRICLDLANNPGILLFEILSKFVEISALHRKDIIELVSYFRKKFQESNSEILWSPYGRRAFKTDICSPPRSSTAAFANSARISIMKERDLYKFLEALKRCNLRTDSPYSKIPVFPLFPDVDGVVLGKPFKDTQKLEMLRKREPLSFFEDYFFNKRDWKTQAMNVKPLKSASGYSDDILAIDQLFKKKQHWTVSDAVALKQHVKRATDTYHLGIALDHRKEMLNLWKKIRGDLVGLESNNESFYNTFSTYTWSWNVCQELLSAKDLRLHDANVNKTSPSNSGLSSPSDLSESDPETGRKRKRKSSRGFRQ", "length": 432 }, "evidence": [ { "id": "A0A8C2MK99", "url": "https://omabrowser.org/oma/group/A0A8C2MK99/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80X60-1", "protein_name": "EF-hand calcium-binding domain-containing protein 3", "gene_name": "Efcab3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVSEIKATMKLKPLKAPVFHKRDKDLRGSFSDHLKHKESKLSPAQLEAFRNAYNFFTKDRTGCIDSHGLISTIAKLGMNLNTYDIYNELKCADLDRDGKINFSDFINVLTDKKLFLKAVVPEKKICLDLANNPGILLFEILSKFVETSSLHRKDIIELVSYFRKRFQESHSEIMWSSYGRRGLKSEICSPPRSSTAAFANSARISIMKERDLYKFLEALKRCNLRTDSPYSKIPVFPLFPDVDGTVMGKPFKDTQKIEMLRRKEPLTFFEDYFFNKRDWKTQAMNVKPLKSASGYSDDILAIDHLFKKKQHWTVTDAAAIKQHVKKATESYNLGIALDHRKEMLNLWKKIRGDLVGIESNNESFYNTFSTYTWSWNVCQELLSAKDLRLHDASMNKSSPSNSGLSSPSDFSESDPETGRKRKRKSSRGFRQ", "length": 432 }, "evidence": [ { "id": "A0A8C2MK99", "url": "https://omabrowser.org/oma/group/A0A8C2MK99/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N7B9-1", "protein_name": "EF-hand calcium-binding domain-containing protein 3", "gene_name": "EFCAB3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVSEIKPKLKLNPLTKVPISHNKRDRDLPGSLQCQLQHKEKKLSASQMAAFQDAYNFFYKDKTGCIDFHGLMCTVAKLGMNLTKHDVYNELKCADIDRDGKVNFSDFIKVLTDKNLFLKAVVPEKETCLDLAGNPGILLFEILSRLLETSALPRKSIIEIVSYFQRKFQHTGPGMLWSPYTMGYGKRTLKPDICTPPSSSMAAFANAARIAIMKEKDLFKFLEELKRCNSGSDSPYSKIPIFPLFPNVDGVVMGKPFKDMQKLEMLRIKEPLHFFEDYFFHKRDWKTQAANIKSMDPASGYSNNIFTIDQMLKKKQTCTVADATAIKQHVKRATDTYNLGIALEHRKEMLNLWQKIRGDLIGMDSRNESFYDTFSTYTWSWNVCQELLSPKDLRLYDAYVNRNSSHNSRSSSSSDTSECYTDSGRKRKRKGLKGFQQ", "length": 438 }, "evidence": [ { "id": "A0A8C2MK99", "url": "https://omabrowser.org/oma/group/A0A8C2MK99/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MK99", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MK99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MK99" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 91, "end_pos": 116, "start_aa": "Lys", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 396, "end_pos": 398 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MKA0-1", "uniprot_ac": "A0A8C2MKA0", "uniprot_id": "A0A8C2MKA0_CRIGR", "mass": { "chemical_mass": 35186.0, "monoisotopic_mass": 35186.0 }, "refseq": { "ac": "XP_003511419", "name": "lathosterol oxidase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511419" }, "gene_names": [ { "name": "Sc5d", "type": "recommended", "evidence": [ { "id": "A0A8C2MKA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ] }, { "name": "Sc5d", "type": "synonym", "evidence": [ { "id": "XP_003511419", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511419" } ] } ], "protein_names": [ { "name": "Lathosterol oxidase", "type": "synonym", "evidence": [ { "id": "A0A8C2MKA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0/entry#names_and_taxonomy" } ] }, { "name": "lathosterol oxidase", "type": "synonym", "evidence": [ { "id": "XP_003511419", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511419" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615094.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511419", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511419" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sc5d", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0", "locus": {} } ], "crossref": [ { "id": "100752960", "url": "https://www.ncbi.nlm.nih.gov/gene/100752960", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752960", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FVFICPM", "url": "https://omabrowser.org/oma/group/FVFICPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MKA0", "url": "https://www.orthodb.org/?gene=A0A8C2MKA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11863", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11863", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04116", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04116", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511419", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511419", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MKA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLVLNVADHYFFTPYVYPATWPEDNIVRQTISLLIVTNLGAYILYFFCATLSYYFVYDHSLMKHPQFLKNQVSREIMFTVKSLPWISIPTISLFLLELRGYSKLYDDIGDFPSGWIHLIVSVVSFLFFTDMLIYWIHRGLHHRLFYKRIHKPHHIWKIPTPFASHAFHPVDGFLQSLPYHIYPFVFPLHKVVYLGLYVLVNVWTISIHDGDFRVPQMLRPYINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKNPSSFEGKGPLSYVRKMAEGEFNSLAENGCKNEKLCNGEFTKTK", "length": 299, "header": "tr|A0A8C2MKA0-1|A0A8C2MKA0_CRIGR Isoform 1 of Lathosterol oxidase OS=Cricetulus griseus OX=10029 GN=Sc5d PE=4 SV=1 CANONICAL=A0A8C2MKA0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MKA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0/entry", "sequence": { "sequence": "MDLVLNVADHYFFTPYVYPATWPEDNIVRQTISLLIVTNLGAYILYFFCATLSYYFVYDHSLMKHPQFLKNQVSREIMFTVKSLPWISIPTISLFLLELRGYSKLYDDIGDFPSGWIHLIVSVVSFLFFTDMLIYWIHRGLHHRLFYKRIHKPHHIWKIPTPFASHAFHPVDGFLQSLPYHIYPFVFPLHKVVYLGLYVLVNVWTISIHDGDFRVPQMLRPYINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKNPSSFEGKGPLSYVRKMAEGEFNSLAENGCKNEKLCNGEFTKTK", "length": 299, "header": "tr|A0A8C2MKA0-1|A0A8C2MKA0_CRIGR Isoform 1 of Lathosterol oxidase OS=Cricetulus griseus OX=10029 GN=Sc5d PE=4 SV=1 CANONICAL=A0A8C2MKA0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752960", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLVLRVADYYFFTPYVYPATWPEDDIFRQAISLLIVTNVGAYILYFFCATLSYYFVFDHALMKHPQFLKNQVRREIKFTVQALPWISILTVALFLLEIRGYSKLHDDLGEFPYGLFELVVSIISFLFFTDMFIYWIHRGLHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPYHIYPFIFPLHKVVYLSLYILVNIWTISIHDGDFRVPQILQPFINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGKRSSHSGNGCKNEKLFNGEFTKTE", "length": 299 }, "evidence": [ { "id": "A0A8C2MKA0", "url": "https://omabrowser.org/oma/group/A0A8C2MKA0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O88822-1", "protein_name": "Lathosterol oxidase", "gene_name": "Sc5d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLVLSAADYYFFTPYVYPATWPEDNIIRQTISLLIVTNLGAYILYFFCATLSYYFVYDHSLMKHPQFLKNQVSREIVFTVKSLPWISIPTVSLFLLELRGYSKLYDDIGDFPNGWIHLMVSVVSFLFFTDMLIYWIHRGLHHRLVYKRIHKPHHIWKIPTPFASHAFHPVDGFLQSLPYHIYPFVFPLHKVVYLGLYVLVNVWTISIHDGDFRVPQILRPFINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKHPSSFEGKGPHSYVKNMTEKESNSFAENGCKGKKVGNGEFTKNK", "length": 299 }, "evidence": [ { "id": "A0A8C2MKA0", "url": "https://omabrowser.org/oma/group/A0A8C2MKA0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q39208-1", "protein_name": "Delta(7)-sterol-C5(6)-desaturase 1", "gene_name": "STE1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAADNAYLMQFVDETSFYNRIVLSHLLPANLWEPLPHFLQTWLRNYLAGTLLYFISGFLWCFYIYYLKINVYLPKDAIPTIKAMRLQMFVAMKAMPWYTLLPTVSESMIERGWTKCFASIGEFGWILYFVYIAIYLVFVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPVDGILQAVPHVIALFIVPIHFTTHIGLLFMEAIWTANIHDCIHGNIWPVMGAGYHTIHHTTYKHNYGHYTIWMDWMFGSLRDPLLEEDDNKDSFKKAE", "length": 281 }, "evidence": [ { "id": "A0A8C2MKA0", "url": "https://omabrowser.org/oma/group/A0A8C2MKA0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9EQS5-1", "protein_name": "Lathosterol oxidase", "gene_name": "Sc5d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLVLSAADYYFFTPYVYPATWPEDNIIRQTVSLLVVTNLGAYILYFFCATLSYYFVYDHSLMKHPQFLKNQVSREIMFTVKSLPWISIPTVSLFLLELRGYSKLYDDIGDFPNGWIHLIMSVISFLFFTDMLIYWIHRGLHHRLLYKHIHKPHHIWKIPTPFASHAFHPVDGFLQSLPYHIYPFVFPLHKVVYLGLYVLVNVWTISIHDGDFRVPQIFRPFINGSAHHTDHHMLFDYNYGQYFTLWDRIGGSFKHPSSFEGKGPHSYVKNMTEKESNSLAENGCKSKKLCNGEFTKNE", "length": 299 }, "evidence": [ { "id": "A0A8C2MKA0", "url": "https://omabrowser.org/oma/group/A0A8C2MKA0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "pmid": "" }, { "name": "delta7-sterol 5(6)-desaturase activity", "id": "GO:0050046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050046", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cholesterol biosynthetic process via desmosterol", "id": "GO:0033489", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033489", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "pmid": "" }, { "name": "cholesterol biosynthetic process via lathosterol", "id": "GO:0033490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033490", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "pmid": "" }, { "name": "negative regulation of ferroptosis", "id": "GO:0110076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0110076", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MKA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA0" }, { "id": "PF04116", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04116" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fatty acid hydroxylase", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 252, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 224, "end_pos": 226 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MKA4-1", "uniprot_ac": "A0A8C2MKA4", "uniprot_id": "A0A8C2MKA4_CRIGR", "mass": { "chemical_mass": 77968.0, "monoisotopic_mass": 77968.0 }, "refseq": { "ac": "XP_003511299", "name": "F-box only protein 42", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511299" }, "gene_names": [ { "name": "Fbxo42", "type": "recommended", "evidence": [ { "id": "A0A8C2MKA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4" } ] }, { "name": "Fbxo42", "type": "synonym", "evidence": [ { "id": "XP_003511299", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511299" } ] } ], "protein_names": [ { "name": "F-box only protein 42", "type": "synonym", "evidence": [ { "id": "XP_003511299", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511299" }, { "id": "A0A8C2MKA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 210 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615067.1) and transcript sequence (IACG01061769.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003511299.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511299", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511299" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fbxo42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4", "locus": {} } ], "crossref": [ { "id": "cd22110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751392", "url": "https://www.ncbi.nlm.nih.gov/gene/100751392", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751392", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751392", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AWLLHIH", "url": "https://omabrowser.org/oma/group/AWLLHIH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MKA4", "url": "https://www.orthodb.org/?gene=A0A8C2MKA4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46432", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46432", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46432:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46432:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13415", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13415", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511299", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511299", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MKA4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MKA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSDSEDDSFMAVDQEETVLEGTMEQEEESHPVLEVEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIGDKMIVFGGSLGSRQMSNEVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHPGPWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGTLSPGTAAVGGASLDSPVQVVSPSTPSASEGYDLKMGLSLAPRRGSLPDQKDLRLSSIDLNWDLKSASNSSHVDGTDNRTVAGSVRHPPEQTNGVHTPPHVASALAGAVSPSALRRSLEAIKAMSSKGPSASATLSPPLGSSPSSPGNQNLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFTSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR", "length": 717, "header": "tr|A0A8C2MKA4-1|A0A8C2MKA4_CRIGR Isoform 1 of F-box only protein 42 OS=Cricetulus griseus OX=10029 GN=Fbxo42 PE=4 SV=1 CANONICAL=A0A8C2MKA4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MKA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4/entry", "sequence": { "sequence": "MASSSDSEDDSFMAVDQEETVLEGTMEQEEESHPVLEVEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIGDKMIVFGGSLGSRQMSNEVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHPGPWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGTLSPGTAAVGGASLDSPVQVVSPSTPSASEGYDLKMGLSLAPRRGSLPDQKDLRLSSIDLNWDLKSASNSSHVDGTDNRTVAGSVRHPPEQTNGVHTPPHVASALAGAVSPSALRRSLEAIKAMSSKGPSASATLSPPLGSSPSSPGNQNLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFTSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR", "length": 717, "header": "tr|A0A8C2MKA4-1|A0A8C2MKA4_CRIGR Isoform 1 of F-box only protein 42 OS=Cricetulus griseus OX=10029 GN=Fbxo42 PE=4 SV=1 CANONICAL=A0A8C2MKA4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 378, "start_aa": "Thr", "end_pos": 378, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr378", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 467, "start_aa": "Thr", "end_pos": 467, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr467", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751392", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751392", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AE47-1", "protein_name": "F-box protein 42", "gene_name": "Fbxo42", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVSWPWTKKKLHWKGQWSKMRTHTQYWRLRKQDIIGPCLSCQKRFWSISCPSSHHIRNTKPQLWSASSGIGLSKVQVFQRGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIGDKMIVFGGSLGSRQMSNEVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHPGPWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGNLSPGTAAVGGASLDSPVQVVSPSTPSASDGYDLKVGLSLVPRRGSLPDQKDLRLSSIDVNWDLKSASTSSRVDSTDSRTVAGSVRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPSSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFTSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR", "length": 715 }, "evidence": [ { "id": "A0A8C2MKA4", "url": "https://omabrowser.org/oma/group/A0A8C2MKA4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BIU5-1", "protein_name": "F-box protein 42", "gene_name": "FBXO42", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASSSDSEDDSFMAVDQEETVLEGTMEQDEEPRAALEVVEMQHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFIKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSSDVWVLDLEQWAWSKPSISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPVLNGGSLSPGSAAVSGSSLDSPVQAVSPSTPSTTEGYDLKMGLSLAPRRGSLPDQKDLRLGSIDLNWDLKAASSGNHVDGVGSRTAGGSLRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMSSKGPPASAALSPPLGSSPGSPGSQNLGSGEAVPVPRPGPAQGDGHALPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVVRGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR", "length": 717 }, "evidence": [ { "id": "A0A8C2MKA4", "url": "https://omabrowser.org/oma/group/A0A8C2MKA4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SUS5-1", "protein_name": "F-box protein 42", "gene_name": "FBXO42", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASSSDSEDDSFMAVDQEETVLEGTMEQDEEPHPVLEAEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFIKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRNMDEAPCVNGRWGTLRPRAQRQTPSSSREGSLSPARGDGSPILNGGSLSPGSAAVGGSSLDSPVQAISPSTPSTTEGYDLKMGLSLAPRRGSLPDQKDLRLGSIDLNWDLKPASTSNHMDGVDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPSALRRSLEAIKAMSSKGPPASAALSPPLGSSPGSPGSQNLSSGETVPVPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR", "length": 717 }, "evidence": [ { "id": "A0A8C2MKA4", "url": "https://omabrowser.org/oma/group/A0A8C2MKA4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6P3S6-1", "protein_name": "F-box only protein 42", "gene_name": "FBXO42", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR", "length": 717 }, "evidence": [ { "id": "A0A8C2MKA4", "url": "https://omabrowser.org/oma/group/A0A8C2MKA4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PDJ6-1", "protein_name": "F-box only protein 42", "gene_name": "Fbxo42", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSSDSEDDSVMAVDQEETALEGTMEQDEDPHPVLEVEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIGDKMIVFGGSLGSRQMSNEVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDTTLLILGGCGGPNALFKDAWLLHMHPGPWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGNLSPGTVAVGGASLDSPVQVVSPSTPSASDGYDLKVGLSLAPRRGSLPDQKDLRLSSIDLNWDLKSASSSSHVDSIDNRTVAGSVRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPSSPGSQSLSSGETVPNSRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFTSSSVVGPPETSLHTVVQGRGELIVFGGLMDKKQNVKYYPKTNALYFVRAKR", "length": 717 }, "evidence": [ { "id": "A0A8C2MKA4", "url": "https://omabrowser.org/oma/group/A0A8C2MKA4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKA4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 592, "end_pos": 594, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MKA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKA4" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 93, "start_aa": "Asn", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 378, 467 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 511, "end_pos": 513 }, { "start_pos": 520, "end_pos": 522 }, { "start_pos": 592, "end_pos": 594 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MKK0-1", "uniprot_ac": "A0A8C2MKK0", "uniprot_id": "A0A8C2MKK0_CRIGR", "mass": { "chemical_mass": 42341.0, "monoisotopic_mass": 42341.0 }, "refseq": { "ac": "XP_027287867", "name": "testis-expressed protein 13A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287867" }, "gene_names": [ { "name": "LOC100751190", "type": "recommended", "evidence": [ { "id": "A0A8C2MKK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0" } ] }, { "name": "LOC100751190", "type": "synonym", "evidence": [ { "id": "XP_027287867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287867" } ] } ], "protein_names": [ { "name": "Testis-expressed protein 13A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MKK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0/entry#names_and_taxonomy" } ] }, { "name": "testis-expressed protein 13A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027287867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287867" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287867" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751190", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0", "locus": {} } ], "crossref": [ { "id": "100751190", "url": "https://www.ncbi.nlm.nih.gov/gene/100751190", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028193", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028193", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049534", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049534", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751190", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MKK0", "url": "https://www.orthodb.org/?gene=A0A8C2MKK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23111:SF106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23111:SF106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15186", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15186", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20864", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20864", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287867", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MKK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MKK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALNPEDLGSGFRHSKVSMYINEQMAKHDKGPDFYLENLSLTWEEVEDKLKVILEDSEVPSDAREACAWGTLALGVRFAHRQGCLQGHGVQWLQDLSRMHKVATISLSSDLKPLTHQQEIERREVTLQLQLAKAKLEEVQRERDLLRLKILQAELKALPAAVRPAVTIPSSVVRRGGTGTQWSAAKEDLAELMAAATGRREDRAEIAAAALAGTITGPEEASEESNGSFMHLLGVMKWKNYPLKRQRAGDLRPKEASMFPLSQSLNLRSISSSEPITVQLPASFTYSYESPFPAIPTTSQLPTTDRPPEMHSYPVSSDMNQLSDMGIHRGDHQELQKDKRSSAFRRPGDWDCPWCKAVNFSRRENCFHCGKGIWLQNP", "length": 378, "header": "tr|A0A8C2MKK0-1|A0A8C2MKK0_CRIGR Isoform 1 of Testis-expressed protein 13A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751190 PE=3 SV=1 CANONICAL=A0A8C2MKK0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MKK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0/entry", "sequence": { "sequence": "MALNPEDLGSGFRHSKVSMYINEQMAKHDKGPDFYLENLSLTWEEVEDKLKVILEDSEVPSDAREACAWGTLALGVRFAHRQGCLQGHGVQWLQDLSRMHKVATISLSSDLKPLTHQQEIERREVTLQLQLAKAKLEEVQRERDLLRLKILQAELKALPAAVRPAVTIPSSVVRRGGTGTQWSAAKEDLAELMAAATGRREDRAEIAAAALAGTITGPEEASEESNGSFMHLLGVMKWKNYPLKRQRAGDLRPKEASMFPLSQSLNLRSISSSEPITVQLPASFTYSYESPFPAIPTTSQLPTTDRPPEMHSYPVSSDMNQLSDMGIHRGDHQELQKDKRSSAFRRPGDWDCPWCKAVNFSRRENCFHCGKGIWLQNP", "length": 378, "header": "tr|A0A8C2MKK0-1|A0A8C2MKK0_CRIGR Isoform 1 of Testis-expressed protein 13A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751190 PE=3 SV=1 CANONICAL=A0A8C2MKK0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKK0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MKK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKK0" }, { "id": "PS50199", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50199" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RanBP2-type", "eco_id": "ECO_0000259", "start_pos": 346, "end_pos": 370, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 226, "end_pos": 228 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 38, "end_pos": 40 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MKQ1-1", "uniprot_ac": "A0A8C2MKQ1", "uniprot_id": "A0A8C2MKQ1_CRIGR", "mass": { "chemical_mass": 239942.0, "monoisotopic_mass": 239942.0 }, "refseq": { "ac": "XP_003496592", "name": "brefeldin A-inhibited guanine nucleotide-exchange protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496592" }, "gene_names": [ { "name": "Arfgef3", "type": "recommended", "evidence": [ { "id": "A0A8C2MKQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" } ] }, { "name": "Arfgef3", "type": "synonym", "evidence": [ { "id": "XP_003496592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496592" } ] } ], "protein_names": [ { "name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 3", "type": "synonym", "evidence": [ { "id": "A0A8C2MKQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1/entry#names_and_taxonomy" } ] }, { "name": "brefeldin A-inhibited guanine nucleotide-exchange protein 3", "type": "synonym", "evidence": [ { "id": "XP_003496592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496592" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613627.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496592" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arfgef3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1", "locus": {} } ], "crossref": [ { "id": "100771638", "url": "https://www.ncbi.nlm.nih.gov/gene/100771638", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771638", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771638", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CRNNPFD", "url": "https://omabrowser.org/oma/group/CRNNPFD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MKQ1", "url": "https://www.orthodb.org/?gene=A0A8C2MKQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663:SF344", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663:SF344", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20252", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20252", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496592", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MKQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MKQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEILRKLQRDASGSKYKAIKESCTWALETLSGLDTIVKIPPHLLREKCLLPLQLALESKNVKLAQHALAGMQKLLSEERFVSMETDSDEKQLLNQILNAVKVTPSLNEDLQVEVMKVLLCITYSPTFDMNGSAVLKIAEVCIETYTCSCHQRSINTAVRATLSQMLGDLTLQLRQRQENTIIENPDAPQEFGSQGSTVEALCDDVVSVLAVLCEKLQASINDSQQLQLLYLECILSVLSSSSSSMYLHRGFTDLIWKSLCPALIVILGNPIHDKTITSAHSSSSTNMESDSASPGVSDHGRGSGCSCTAPTLSGPVARTIYYLAAELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKEILGSPQHLYDLAGPSSTETEPRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVSCVCTLLGALDELSQGKGLSESQVQLLLLRLEELRDGAESSRDSMEINEADFRWQRRVLSSEHTPWESGNERSPDISISVTTDTGQTTLEGELGQTTPEDHKNGLKSPAIQEGKETVCKVSEPEAIDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDYMGHRSLRTAALSLKLLKNQEADQHSARLFVQSLEGLLPRLLALSSVEEVDTALQNFASTFCSGMMHSPGFDGGSSLSFQMLMNADSLYSAAHCALLLNLKLSHGDYYRKRPTLPPGMMKEFMKQVQTSGVLMVFSQAWIEELYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASASMESPFTQSRRIDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEEREAQEPSDAIAQVKLKVEQKLEQMGKVQGVWLHTAHVLCMDAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHTHFSDGASQPPLTIRQPQKTSGSSGLLGDLECEGSSQEQSLEQGPSLSTAPVVQPRSIQELVRECSRGRTSDFRGGSLSGNSAAKVVLSLSTQADRLFDDATDKLNLMALGGFLYQLKKASQSQLFHSVTDTVDYSLTMPGEVKSTQDRKSALHLFRLGDAMLRIVRSKARPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWSEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSTQIQSGWRPLFSALETVHSGNKSEVKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCVPGVGATSTDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLASLPRRLQEQSASSEDGIESVLSDFDDETGLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSVWLRRSHKDHSYWDVASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFELLVACVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHSGTEGFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQGSPKTPNNFDHAQSCQLIIELPPDEKPNGHAKKSVSFREIVVSLLSHQVLLQNLYDVLLEEFVKGPSPGEEKTTVQVPDTKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFDEEERSSDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARLPSLSVQPVSNADWVWLVKRLHKLCMELCNHYIQMHLDLESSLEEPPTFKSDPFFILPSFQSESSTPSTGGFSGKNTPSEDDRREHLSEPLSLRVGGGDMLMLPPSPKTEKKDPGRKKEWWESAGNKICTMAADKTISKLITEYKKRRQPHNLPAFPKEVKVDKKGEPLGPRGPDSPLLQRPQHLMDQGQMRHSFSAGPELLRQEKRPRSGSTGSSLSVSVRDAEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGRVGRVYDIII", "length": 2170, "header": "tr|A0A8C2MKQ1-1|A0A8C2MKQ1_CRIGR Isoform 1 of Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Cricetulus griseus OX=10029 GN=Arfgef3 PE=4 SV=1 CANONICAL=A0A8C2MKQ1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MKQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1/entry", "sequence": { "sequence": "MEEILRKLQRDASGSKYKAIKESCTWALETLSGLDTIVKIPPHLLREKCLLPLQLALESKNVKLAQHALAGMQKLLSEERFVSMETDSDEKQLLNQILNAVKVTPSLNEDLQVEVMKVLLCITYSPTFDMNGSAVLKIAEVCIETYTCSCHQRSINTAVRATLSQMLGDLTLQLRQRQENTIIENPDAPQEFGSQGSTVEALCDDVVSVLAVLCEKLQASINDSQQLQLLYLECILSVLSSSSSSMYLHRGFTDLIWKSLCPALIVILGNPIHDKTITSAHSSSSTNMESDSASPGVSDHGRGSGCSCTAPTLSGPVARTIYYLAAELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKEILGSPQHLYDLAGPSSTETEPRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVSCVCTLLGALDELSQGKGLSESQVQLLLLRLEELRDGAESSRDSMEINEADFRWQRRVLSSEHTPWESGNERSPDISISVTTDTGQTTLEGELGQTTPEDHKNGLKSPAIQEGKETVCKVSEPEAIDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDYMGHRSLRTAALSLKLLKNQEADQHSARLFVQSLEGLLPRLLALSSVEEVDTALQNFASTFCSGMMHSPGFDGGSSLSFQMLMNADSLYSAAHCALLLNLKLSHGDYYRKRPTLPPGMMKEFMKQVQTSGVLMVFSQAWIEELYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASASMESPFTQSRRIDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEEREAQEPSDAIAQVKLKVEQKLEQMGKVQGVWLHTAHVLCMDAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHTHFSDGASQPPLTIRQPQKTSGSSGLLGDLECEGSSQEQSLEQGPSLSTAPVVQPRSIQELVRECSRGRTSDFRGGSLSGNSAAKVVLSLSTQADRLFDDATDKLNLMALGGFLYQLKKASQSQLFHSVTDTVDYSLTMPGEVKSTQDRKSALHLFRLGDAMLRIVRSKARPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWSEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSTQIQSGWRPLFSALETVHSGNKSEVKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCVPGVGATSTDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLASLPRRLQEQSASSEDGIESVLSDFDDETGLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSVWLRRSHKDHSYWDVASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFELLVACVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHSGTEGFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQGSPKTPNNFDHAQSCQLIIELPPDEKPNGHAKKSVSFREIVVSLLSHQVLLQNLYDVLLEEFVKGPSPGEEKTTVQVPDTKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFDEEERSSDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARLPSLSVQPVSNADWVWLVKRLHKLCMELCNHYIQMHLDLESSLEEPPTFKSDPFFILPSFQSESSTPSTGGFSGKNTPSEDDRREHLSEPLSLRVGGGDMLMLPPSPKTEKKDPGRKKEWWESAGNKICTMAADKTISKLITEYKKRRQPHNLPAFPKEVKVDKKGEPLGPRGPDSPLLQRPQHLMDQGQMRHSFSAGPELLRQEKRPRSGSTGSSLSVSVRDAEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGRVGRVYDIII", "length": 2170, "header": "tr|A0A8C2MKQ1-1|A0A8C2MKQ1_CRIGR Isoform 1 of Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Cricetulus griseus OX=10029 GN=Arfgef3 PE=4 SV=1 CANONICAL=A0A8C2MKQ1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1944, "start_aa": "Thr", "end_pos": 1944, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1944", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771638", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771638", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BAG5-1", "protein_name": "ARFGEF family member 3", "gene_name": "ARFGEF3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEEILRKLQKEASGSKYKAIKESCTWALETLDGVDTIVKIPPHLLREKCLLPLQLALESKNVKLAQHALAGIQKLLAEERFVSMETDSDEKQLLNQILNAVKVTPSLHEDLQVEVMKVLLCITYTPTFDLNGSAVLKIAEVCIETYICSCHQRSINTAVRATLSQMLSDLTLQLRQRQENTIIENPDIPQEFRSQGSTVESLCDDLVSVLTVLCEKLQASINDSQQLQLLYLECVLSVLSSSSAAMQLHRGFTDLIWKNLCPALIVILGNPIHDKTITSAHSSGTSTSVESDSASPGISDHGRGSGCSSTAPALSGPVARTIYYIAAELVRLVGSVDSMKPVLQSLYHRVLLYPPAQHRVEAIKVMKELLGSPQRLCDLAGPSSTEPESRKRSISKRKSHLDLLKLIMDGMTEACIRGGIEACYAAVSCVCTLLGALDELSQGRGLSEGQVQLLLLRLEELKDGAESSRDSMEINEADFRWQRRVLSSEHTPWESGNERSPDISISVTTDTGQTTLEGELGQTTPEDHSENHKNGLKSPAIQESKETLSKVSEPEAVDQPDVVQRSHTVAYPDITNFLSVDCRMRSYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDCLGHRSLRTAALSLKLLKNQEADQHSARLFVQSLEGLLPRLLALPSVEEVDSALQNFASTFCSGMMHSPAFDGNSSLGLQMLMNADSLYSAAHYALLLNLKLSHGDYYRKRPALAPGTMKEFMKQVQTSGVLMVFSQTWIEELYNQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASASTESPFTQSRRIDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEEKEIQEPGDAIAQVKLKVEQKLEQIGKLQGVWLHTAHVLCMDAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHTHFSDGTSQPPLAISQPQKTPRGGLIRDPESEGSPPEQSLEPESSLSAAPIIQPLSIQELVREGSRGRASDFRGGGLMTGSSAAKVVLTLSTQADRLFEDATDKLNLTALGGFLYQLKKASQSQLFRSVTETVDYSLAMPGEVKSTQDRKSALHLFRLGDAMLRIVRSKSRPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWNEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSIQIQSGWRPLFSALETVHSGNKSEVKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCVPGPGATSPDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLASLPRRLQEQSASSEDGMESVLSDFDDDTGLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSLWLRRSHKDHSYWDVASANFKHAIGLSCELVVEHIQSFIHSDIRYEGMINTMLKELFELLVACVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHSGTESFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQCSPKTPNNFDHAQSCQLIIELPPDEKPNGHTKKSVSFREIVVSLLSHQVLLQNLYDILLEEFVKGPSPGEEKMQVPEPKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLSNQETITAEQVKKVLFEDDERSTDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARLPSLSVQPISNADWVWLVKRLHKLCMELCNNYIQMHLDLENSMEEAPIFKSDPFFILPSFQSESSTPSTGGFSGKDTPSEDDRSQNRDHAGEPLSLRGPSGEMLLLPPSPKVEKKDHSRKKEWWENAGNKIYTMAADKTISKLMTEYKKRKQQHNLSAFPKEVKVEKKGEPLGPRGQGSPLLQRPQHLMDQGQMRHSFSAGPELLRQEKRPRSGSTGSSRSVSARDAEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGRVGRVYDIIV", "length": 2176 }, "evidence": [ { "id": "A0A8C2MKQ1", "url": "https://omabrowser.org/oma/group/A0A8C2MKQ1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5ZMK5-1", "protein_name": "ARFGEF family member 3", "gene_name": "Arfgef3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEILRKLQRDASGSKYKAIKESCTWALETLGGLDTVAKIPPHLLREKCLLPLQLALESKNVKLAQHALAGMQKLLSEERFVSMETDSDDKQLLNQILNAVKVTPSLNEDLQVEVMKVLLCITYTPTFDMNGSAVLKIAEVCIETYTCSCHQRSINTAVRATLSQMLGDLTLQLRQRQENTIIENPDAPQGFRSQGLTVEALCDDVVSVLAVLCEKLQASINDSQQLQLLYLECILSILSSSSSSMYLHRGFTDLIWKSLCPALVVILGNPIHDKTITSAHSTSTGTSMESDSASLGVSDHGRGSGCSCTAPTLSGPVARTIYYLATELVRLVGSVDSLKPVLQSLYHRVLLYPPPQHRVEAIKIMREILGSPQRLYDLAGPSSLESEPRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVSCVCTLLGALDELSQGKGLNDNQVQQLLLRLEELRDGAESSRDSMEINEADFRWQRKVLSSEHTPWETGNERSPDISISVTTDTGQTTLEGELGQTTPEDHKNGLKSPAIQEGRETMSKVSEPETIDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDYMGHRSLRTAALSLKLLKNQEADQHSARLFIQSLEGLLPRLLALSSVEEVDSALQNFASTFCSGMMHSPGFDGGSSLSIQMLMNADSLYTAAHCALLLNLKLSHGDYYRKRPNVAPGMMKEFMKQVQTSGVLMVFSQAWIEELFHQVLDRNMLGEAGYWGSPEDNNLPLITMLTDIDGLESSAIGGQLMASASMESPFTQSRKLDDSTVAGIAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEERESQEPSDALAQGMKLKVEQKLEQMGKAQGVWLHTAHVLCMDAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHTHFSDGLSQPPLTIHQPQKTSGSSGLLGELEFKSSSQEQSLEQGPSLNAAPVVQPHTIQELVRECSRGRTSDFRGGSLSGNSAAKVVLSLSTQADRLFDDATDKLNLTALGGFLYQLKKASQSQLFHSVTDTVDYSLTMPGEVKSTQDQKSALHLYRLGDAMLRIVRSKARPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWSEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSAQIQSGWRPLFSALETVHSGNKSEVKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCVPGAGATSTDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLASLPRRLQEQSASSEDGIESVLSDFDDDTGLIDVWIILLEQLTAAVSICPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSLWLRRSHKDHSYWDVASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFELLVVCVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHSGTEGFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQSSPKTPNNFDHAQSCQLIIELPPDERPNGHAKKSVSFREIVVSLLSHQVLLQNLYDILLEEFVKGPSPGEEKTVQAPDTKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFEEEERSSDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARLPSLSVQPVSNADWVWLVKRLHKLCMELCNHYIQMHLDLESSLEEPLAFKSDPFFILPSFQSESSTPSTGGFSGKNTPSEDDRREHLSEPLSLRVGSGDILMLPPSPKTEKKDPGRKKEWWESAGNKIYTMAADKTISKLMTEYKKRRQPHNLPPFPKEVKVDKKGEPLGPRGPDSPLLQRPQHLIDQGQMRHSFSAGPELLRQEKRPRSGSTGSSLSISVRDAEAQIQAWTNMVLTVLNQIQILPDPTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGRVGRVYDIIV", "length": 2171 }, "evidence": [ { "id": "A0A8C2MKQ1", "url": "https://omabrowser.org/oma/group/A0A8C2MKQ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UGY8-1", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 3", "gene_name": "Arfgef3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEILRKLQRDASGSKYKAIKESCTWALETLGGLDTVVKIPPHLLREKCLLPLQLALESKNVKLAQHALAGMQKLLSEERFVSMETDSDEKQLLNQILNAVKVTPSLNEDLQVEVMKVLLCITYTPTFDMNGSAVLKIAEVCIETYTCSCHQRSINTAVRATLSQMLGDLTLQLRQRQENTIIENPDAPQEFRSQGLTVEALCDDVISVLAVLCEKLQASINDSQQLQLLYLECILSVLSSSSSSMHLHRGFTDLIWKSLCPALVVILGNPIHDKTITSAHSTSTSTSMESDSASLGVSDHGRGSGCSCTAPTLSGPVARTIYYLAAELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKEILGSPQRLYDLAGPSSIESEPRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVSCVCTLLGALDELSQGKGLNDTQVQQLLLRLEELRDGAESSRDSMEINEADFRWQRRVLSSEHTPWESGNERSPDISISVTTDTGQTTLEGELGQTTPEDHKNGLKSPAIQEGKGTMGKVSEPEAIDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDYIGHRSLRTAALSLKLLKNQEADQHSARLFIQSLEGLLPRLLALSSVEEVDSALQNFASTFCSGMMHSPGFDGGSSLSFQMLMNADSLYTAAHCALLLNLKLSHGDYYRKRPTVAPGMMKEFMKQVQTSGVLMVFSQAWLEELYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASASVESPFTQSRRLDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEERQSQEPSDALAQVKLKVEQKLEQMGKVQGVWLHTAHVLCMDAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHTHFSDGISQPPLTIHQPQKTSGSSGLLGEIEFKSSSQEQSLEQGPSLNTAPVVQPHSIQELVRECSRGRTSDFRGGSLSGNSAAKVVLSLSTQADRLFDDATDKLNLTALGGFLYQLKKASQSQLFHSVTDTVDYSLTMPGEVKSTQDQKSALHLFRLGDAMLRIVRSKARPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWSEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSAQIQSGWRPLFSALETVRSGNKSEVKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCVPGAGATSTDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLASLPRRLQEQSASSEDGIESVLSDFDDDTGLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSLWLLRSHKDHSYWDVASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFELLVVCVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHGGTEGFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQCSPKTPNNFDHAQSCQLIIELPHDEKPNGHAKKSVSFREIVVSLLSHQVLLQNLYDILLEEFVKGPSPGEEKTVQVPDTKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFEEEERSSDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARLPSLSVQPVSNADWVWLVKRLHKLCMELCNHYIQMHLDLESSLEEPLTFKSDPFFILPSFQSESSTPSTGGFSGKNTPSEDDRREHLSEPQSLRVGSGDMLMLPPSPKTEKKDPGRKKEWWESAGNKICTMAADKTISKLMTEYKKRRQPHNLPPFPKEVKVDKKGEPLGPRGPDSPLLQRPQHLIDQGQMRHSFSAGPELLRQEKRPRSGSTGSSLSVSVRDAEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGRVGRVYDIIT", "length": 2170 }, "evidence": [ { "id": "A0A8C2MKQ1", "url": "https://omabrowser.org/oma/group/A0A8C2MKQ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TH69-1", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 3", "gene_name": "ARFGEF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEILRKLQKEASGSKYKAIKESCTWALETLGGLDTIVKIPPHVLREKCLLPLQLALESKNVKLAQHALAGMQKLLSEERFVSMETDSDEKQLLNQILNAVKVTPSLNEDLQVEVMKVLLCITYTPTFDLNGSAVLKIAEVCIETYISSCHQRSINTAVRATLSQMLSDLTLQLRQRQENTIIENPDVPQDFGNQGSTVESLCDDVVSVLTVLCEKLQAAINDSQQLQLLYLECILSVLSSSSSSMHLHRRFTDLIWKNLCPALIVILGNPIHDKTITSAHTSSTSTSLESDSASPGVSDHGRGSGCSCTAPALSGPVARTIYYIAAELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKEILGSPQRLCDLAGPSSTESESRKRSISKRKSHLDLLKLIMDGMTEACIKGGIEACYAAVSCVCTLLGALDELSQGKGLSEGQVQLLLLRLEELKDGAEWSRDSMEINEADFRWQRRVLSSEHTPWESGNERSLDISISVTTDTGQTTLEGELGQTTPEDHSGNHKNSLKSPAIPEGKETLSKVLETEAVDQPDVVQRSHTVPYPDITNFLSVDCRTRSYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDCLGHRSLRTAALSLKLLKNQEADQHSARLFIQSLEGLLPRLLSLSNVEEVDTALQNFASTFCSGMMHSPGFDGNSSLSFQMLMNADSLYTAAHCALLLNLKLSHGDYYRKRPTLAPGVMKDFMKQVQTSGVLMVFSQAWIEELYHQVLDRNMLGEAGYWGSPEDNSLPLITMLTDIDGLESSAIGGQLMASAATESPFAQSRRIDDSTVAGVAFARYILVGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGIKEQNQKERDAICMSLDGLRKAARLSCALGVAANCASALAQMAAASCVQEEKEEREAQEPSDAITQVKLKVEQKLEQIGKVQGVWLHTAHVLCMEAILSVGLEMGSHNPDCWPHVFRVCEYVGTLEHNHFSDGASQPPLTISQPQKATGSAGLLGDPECEGSPPEHSPEQGRSLSTAPVVQPLSIQDLVREGSRGRASDFRGGSLMSGSSAAKVVLTLSTQADRLFEDATDKLNLMALGGFLYQLKKASQSQLFHSVTDTVDYSLAMPGEVKSTQDRKSALHLFRLGNAMLRIVRSKARPLLHVMRCWSLVAPHLVEAACHKERHVSQKAVSFIHDILTEVLTDWNEPPHFHFNEALFRPFERIMQLELCDEDVQDQVVTSIGELVEVCSTQIQSGWRPLFSALETVHGGNKSEMKEYLVGDYSMGKGQAPVFDVFEAFLNTDNIQVFANAATSYIMCLMKFVKGLGEVDCKEIGDCAPAPGAPSTDLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLAGLPRRLQEQSASSEDGIESVLSDFDDDTGLIEVWIILLEQLTAAVSNCPRQHQPPTLDLLFELLRDVTKTPGPGFGIYAVVHLLLPVMSVWLRRSHKDHSYWDMASANFKHAIGLSCELVVEHIQSFLHSDIRYESMINTMLKDLFELLVACVAKPTETISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLKPVKDLLGCFHSGTESFSGEGCQVRVAAPSSSPSAEAEYWRIRAMAQQVFMLDTQCSPKTPNNFDHAQSCQLIIELPPDEKPNGHTKKSVSFREIVVSLLSHQVLLQNLYDILLEEFVKGPSPGEEKTIQVPEAKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTSPGLKCLLKKVSGIGGAANLYRQSAMSFNIYFHALVCAVLTNQETITAEQVKKVLFEDDERSTDSSQQCSSEDEDIFEETAQVSPPRGKEKRQWRARMPLLSVQPVSNADWVWLVKRLHKLCMELCNNYIQMHLDLENCMEEPPIFKGDPFFILPSFQSESSTPSTGGFSGKETPSEDDRSQSREHMGESLSLKAGGGDLLLPPSPKVEKKDPSRKKEWWENAGNKIYTMAADKTISKLMTEYKKRKQQHNLSAFPKEVKVEKKGEPLGPRGQDSPLLQRPQHLMDQGQMRHSFSAGPELLRQDKRPRSGSTGSSLSVSVRDAEAQIQAWTNMVLTVLNQIQILPDQTFTALQPAVFPCISQLTCHVTDIRVRQAVREWLGRVGRVYDIIV", "length": 2177 }, "evidence": [ { "id": "A0A8C2MKQ1", "url": "https://omabrowser.org/oma/group/A0A8C2MKQ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W444-1", "protein_name": "SEC7 domain-containing protein", "gene_name": "Dmel\\CG5937", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEDLFLLIIKESTGTKHNALRQTAQIAYDKLYRQHGIHRDPSHELRSVCFTALQMALDTKRPKFITMGLNGLHRVIKDERFYIGLEPEDDSVWLPSQLLRATNGILPTTSSEDTVVNVLRLFLAMACSPACTLNGRLLIEILSRCGECWEMGSRATKAASLAAASQCLRTFCAFLIEEAEEVKKTAPAGLMTQTQASAVYNEVIPVMQWLCSRLVEPNVNASPNKKCENHSSLYLTECILTLSSALPRNVHANPHFTSFLWQKFCPTLAAALGSPGRINLDKKFTYKDALHMIENEARGFFTGPGLDGPQARCVYLTAIQLLRIAGAHGSLRPMLEALFHRMLLLPAPQNRTEPLRCVREIFKSPERLIDLAVILYVDKNTAQGCSDEMALFRLLVDAMEECAYGASGGGSATEASLQASVECMVALLDSLQVLCSGELTESMISDQIVQVVNGRHDLLKDADYSGPLTYQSMARLPAPYRDAIVEFRQTVFETSSGSESEGEPQHEQDAASNGSGDTEGPEDDDPSSSSDETSRVENRWPYSHLEAPVMPIRTDSDNDRQHARDFARALRQDLVPKLLRLRSCVELDEAMQEFASAVCQENSMNFSDFDYNLTAINADGIYLAIYSSLLLSLQLMRAGFYEQVAQGMSHKDILVPMSEQQFVTSVQNTGVLVYLSSPWLCELYQSVTVCNVLEAMPRQQLEGMGPRCALVDMLCDAGGLGATQMLSEWQRLQTANVKHKEEEQLHDKRREAAKKLCRRLLTCCWDSMVIVLSSGLGDLQTSSASNKLVALSKRTLRVKAKANKSNGEALYAMCLDGLHSAATLSNSLNLQHLAGKILNLLASNVCQTSGPRISASQAMSMDVVLTGGLNLGSYSADCWPSIFAVCRHVSQLEHEIFSMQNPAISASPGSSRRDLETGEKLSNGNAQDKLNLSSIPIDDDETCVDVYSFLQAPMQSPNTNITSILKVYSGTNETVLLSQSDTSKVLCALSHQAENLFGDAAERLSLPSLCQFLKHLCRASRDQLYKSQVARKGSRIWWPSKGWKKLDSLPMSLLLHRIGDVTLKVFRSSRPLLHVLKVWAITGPHLMDAACHRDRMISKRAIEYIHDIITALLVEQSELPYFHFNEALLKPFENLLSMDTDVDVQDQIVACLYEVVEAHRTEIRSGWRPLFGTLRNARSRMLNMSNIIDIFRVFLDSDNTLVFANAGLDCILCLLSYLEISGGGNNNACSGGSGSAAGGTASNGGQQEEDNTFRPTDFLHETLRFLERCSSILGFMHSMPKCPNFHSTYKIKGISYTHIIDANIPSSMENFTYFGNDYLQTRNEQYMISYRSLHIDKDTIVKIDEMDKPSGVLKVWFLLLDGLTNSLIVCPYSHQAPILQTIFKLFKNLLASPGIDFGFYCINHLLVPMIQDWLRYINKTGSSWQLVEKNFKHCCCMTTDLVVEFIEKSVPEQRRLGAGTKTRLAQIVHPADNLLYSKLKFVTERIEREQQQQQSPSVQDHGCGYTQQYDSSSSSASEEQQKNGGGVGGGGSNLIESPTKISGSATLALKQLLLVLIECAAQSQEAIARISVSCLKHVILSTGMLFNESQWMIACSAIHRACTVTIAPLRQLSFAFHEKSNSFYGDCANVKVAARRDSSLEELARIYALAQQVFLSDNQREPGQNQAPTPSASQCKLSDDRSYSFLLYPLNNGFNSNLDNFVIRIPFKNLVVGLLANQMLLQLVAKLLLSRLKCVPQAVSTCIFDNYAASAASPSHDYDLDFRSKEILLRCVKQYLMSALEFDSRPGLKFLMQKVSNIEYAANLYKQMTSSWMIYYIALVDSHLNDIVVYNLGPEDLNFILESCSRLNTTTVKKKENFVRYLFCLQDAWNLVCELYLSNSALHEIESGSGKLRQKPPQLLHHPQTKPMCISLNGNGDAEMTDTGSGSGSGSSTSPSKCVQLQEEENVTMTTLISEFQPKCRSNPFDTNRQAKSSEAESISPEIEQQRASSILKDSNYKRAALAQLVVASMELLRSLPGEAEENLKLLMTPTIREAFRLVQLQGNELKVNQF", "length": 2051 }, "evidence": [ { "id": "A0A8C2MKQ1", "url": "https://omabrowser.org/oma/group/A0A8C2MKQ1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of ARF protein signal transduction", "id": "GO:0032012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032012", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1304, "end_pos": 1306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MKQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ1" }, { "id": "SM00222", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SEC7", "eco_id": "ECO_0000259", "start_pos": 581, "end_pos": 793, "start_aa": "Ser", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1944 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1304, "end_pos": 1306 }, { "start_pos": 131, "end_pos": 133 }, { "start_pos": 222, "end_pos": 224 }, { "start_pos": 590, "end_pos": 592 }, { "start_pos": 629, "end_pos": 631 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MKQ5-1", "uniprot_ac": "A0A8C2MKQ5", "uniprot_id": "A0A8C2MKQ5_CRIGR", "mass": { "chemical_mass": 46686.0, "monoisotopic_mass": 46686.0 }, "refseq": { "ac": "XP_027274272", "name": "putative acyl-coenzyme A thioesterase 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274272" }, "gene_names": [ { "name": "Acot6", "type": "recommended", "evidence": [ { "id": "A0A8C2MKQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5" } ] }, { "name": "Acot6", "type": "synonym", "evidence": [ { "id": "XP_027274272", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274272" } ] } ], "protein_names": [ { "name": "Acyl-coenzyme A thioesterase 6", "type": "synonym", "evidence": [ { "id": "A0A8C2MKQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5/entry#names_and_taxonomy" } ] }, { "name": "putative acyl-coenzyme A thioesterase 6", "type": "synonym", "evidence": [ { "id": "XP_027274272", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274272" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274272", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274272" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Acot6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5", "locus": {} } ], "crossref": [ { "id": "100774016", "url": "https://www.ncbi.nlm.nih.gov/gene/100774016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042490", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042490", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774016", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MKQ5", "url": "https://www.orthodb.org/?gene=A0A8C2MKQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10824", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10824", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10824:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10824:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08840", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08840", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274272", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274272", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVTLSLDPAGRSCWDEPLGISVHGLAPEQPVTLRAALRDEKGALFRAHARYRADDHGGLDLARAPALGGSFAGIEPMGLLWALEPERPLWRLIKRDVQTPFVVELEVLDGHEPDGGRLLARAVHERHFMAPGVRRVPVREGRVRATLFLPPGKGRFPGIMDLFGSGGGLCEYRASLLAGHGFAVLALAYFRFEDLPEYLSDVHLEYFEEALTFMLQHPKVKGPNVGLLGFSKGGDLCLSMAAFLRNITATVLINACVANTIAPLYYKDLFIPDLGCDPTKQKTMESGLWDLVDIWNNPLEEPNHKSLIPLEKAQGPFLFIVGMDDHNWKSEFYAHIACGRLQAHGKDRPQIIYYPETGHCIDPPYFPPSRASVHAVLGEAVFYGGEPRAQARAQVDAWQQIQTFFQKYLNGEKPVKCSKI", "length": 421, "header": "tr|A0A8C2MKQ5-1|A0A8C2MKQ5_CRIGR Isoform 1 of Acyl-coenzyme A thioesterase 6 OS=Cricetulus griseus OX=10029 GN=Acot6 PE=3 SV=1 CANONICAL=A0A8C2MKQ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5/entry", "sequence": { "sequence": "MAVTLSLDPAGRSCWDEPLGISVHGLAPEQPVTLRAALRDEKGALFRAHARYRADDHGGLDLARAPALGGSFAGIEPMGLLWALEPERPLWRLIKRDVQTPFVVELEVLDGHEPDGGRLLARAVHERHFMAPGVRRVPVREGRVRATLFLPPGKGRFPGIMDLFGSGGGLCEYRASLLAGHGFAVLALAYFRFEDLPEYLSDVHLEYFEEALTFMLQHPKVKGPNVGLLGFSKGGDLCLSMAAFLRNITATVLINACVANTIAPLYYKDLFIPDLGCDPTKQKTMESGLWDLVDIWNNPLEEPNHKSLIPLEKAQGPFLFIVGMDDHNWKSEFYAHIACGRLQAHGKDRPQIIYYPETGHCIDPPYFPPSRASVHAVLGEAVFYGGEPRAQARAQVDAWQQIQTFFQKYLNGEKPVKCSKI", "length": 421, "header": "tr|A0A8C2MKQ5-1|A0A8C2MKQ5_CRIGR Isoform 1 of Acyl-coenzyme A thioesterase 6 OS=Cricetulus griseus OX=10029 GN=Acot6 PE=3 SV=1 CANONICAL=A0A8C2MKQ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"domain_list": [ { "evidence": [ { "id": "A0A8C2MKQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5" }, { "id": "PF04775", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04775" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 141, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MKQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKQ5" }, { "id": "PF08840", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAAT/Acyl-CoA thioester hydrolase C-terminal", "eco_id": "ECO_0000259", "start_pos": 203, "end_pos": 411, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], 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analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303061", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303061" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKR5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKR5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752058", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKR5", "locus": {} } ], "crossref": [ { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752058", "url": "https://www.ncbi.nlm.nih.gov/gene/100752058", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752058", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752058", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TKCHVSG", "url": "https://omabrowser.org/oma/group/TKCHVSG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MKR5", "url": "https://www.orthodb.org/?gene=A0A8C2MKR5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF63", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF63", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303061", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303061", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MKR5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MKR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPSTLLLLCVVGLSQADREKIFNGVECVKNSQPWQVGLFRGKYLRCGGVLVDRQWILTAAHCSGKYVVRLGEHSLTKLDWTEQLRLTTFSMTHPSYQGAHQNHEHDLRLLRLSRPVHLTHAVRPLALPAFCAPMGTKCHISGWGITNKPWDPFPDRLQCLDLSIVSNNTCQAVFPGRVTENMVCAGGEAGKDACQGDSGGPLVCGGVLQGLVSWGSVGPCGQKGIPGVYTKICKYVPWIRTVIRNN", "length": 247, "header": "tr|A0A8C2MKR5-1|A0A8C2MKR5_CRIGR Isoform 1 of Kallikrein-12 OS=Cricetulus griseus OX=10029 GN=LOC100752058 PE=4 SV=1 CANONICAL=A0A8C2MKR5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MKR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKR5/entry", "sequence": { "sequence": "MRPSTLLLLCVVGLSQADREKIFNGVECVKNSQPWQVGLFRGKYLRCGGVLVDRQWILTAAHCSGKYVVRLGEHSLTKLDWTEQLRLTTFSMTHPSYQGAHQNHEHDLRLLRLSRPVHLTHAVRPLALPAFCAPMGTKCHISGWGITNKPWDPFPDRLQCLDLSIVSNNTCQAVFPGRVTENMVCAGGEAGKDACQGDSGGPLVCGGVLQGLVSWGSVGPCGQKGIPGVYTKICKYVPWIRTVIRNN", "length": 247, "header": "tr|A0A8C2MKR5-1|A0A8C2MKR5_CRIGR Isoform 1 of Kallikrein-12 OS=Cricetulus griseus OX=10029 GN=LOC100752058 PE=4 SV=1 CANONICAL=A0A8C2MKR5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255710", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255710" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKW2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKW2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgef19", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKW2", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01221", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01221", "database": "CDD", 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKW2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKW2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003615962.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_016818649.1. 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] } ], "protein_names": [ { "name": "Mpv17-like protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MLI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3/entry#names_and_taxonomy" } ] }, { "name": "mpv17-like protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007636026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007636026" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 237 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613716.1) and transcript sequence (IACG01001453.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007636026.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007636026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007636026" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mpv17l2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3", "locus": {} } ], "crossref": [ { "id": "100770899", "url": "https://www.ncbi.nlm.nih.gov/gene/100770899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770899", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770899", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MLI3", "url": "https://www.orthodb.org/?gene=A0A8C2MLI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04117", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04117", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007636026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007636026", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MLI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MLI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGGWRWARKALAAGRPLFRGRALLVTNTLGCGTLMAAGDGARQAWEVRARPGQSFSARRSACMFAVGCSMGPFLHFWYLWLDRLLPASGLRSLPSVIKKVLVDQMVASPILGVWYFLGLGSLEGQTLEESCQELRAKFWDFYKADWCVWPAAQLVNFLFIPSHFRVTYINGLTLGWDTYLSYLKYWAPEPLPTPGCVD", "length": 200, "header": "tr|A0A8C2MLI3-1|A0A8C2MLI3_CRIGR Isoform 1 of Mpv17-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mpv17l2 PE=3 SV=1 CANONICAL=A0A8C2MLI3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MLI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3/entry", "sequence": { "sequence": "MASGGWRWARKALAAGRPLFRGRALLVTNTLGCGTLMAAGDGARQAWEVRARPGQSFSARRSACMFAVGCSMGPFLHFWYLWLDRLLPASGLRSLPSVIKKVLVDQMVASPILGVWYFLGLGSLEGQTLEESCQELRAKFWDFYKADWCVWPAAQLVNFLFIPSHFRVTYINGLTLGWDTYLSYLKYWAPEPLPTPGCVD", "length": 200, "header": "tr|A0A8C2MLI3-1|A0A8C2MLI3_CRIGR Isoform 1 of Mpv17-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mpv17l2 PE=3 SV=1 CANONICAL=A0A8C2MLI3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 195, "start_aa": "Thr", "end_pos": 195, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr195", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770899", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770899", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of mitochondrial translation", "id": "GO:0070131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070131", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3" } ], "pmid": "" }, { "name": "mitochondrial ribosome assembly", "id": "GO:0061668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061668", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mitochondrial large ribosomal subunit binding", "id": "GO:0140978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140978", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLI3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 195 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", 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CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273448" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mfsd4a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0", "locus": {} } ], "crossref": [ { "id": "cd17453", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17453", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760775", "url": "https://www.ncbi.nlm.nih.gov/gene/100760775", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760775", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760775", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MLL0", "url": "https://www.orthodb.org/?gene=A0A8C2MLL0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23121", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23121:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23121:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273448", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MLL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MLL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCDGRVSGLLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSALGGVFKRTLAQSLWALFTSTLAISLVFAVIPFCHDVKVLASVIALAGLAMGCIDTVANMQLVRIYQKDSAFFLQVLHFFVGFGALLSPLIADPFLSEANCFPANSTANASRSHLFHASRVLGQHHAATQPWSNQTMPRPSPKDSTENHVSYAFWIMALINLPVPLAVLFLLSKERLLTCAQRKPLLLSADELALETRPAEKEDGSSLAPKFQPHPGQEDLFSCCQRKNFQGAPCSFFAIHITAALVLFMTDGMMGAYSAFVYSYAVEKPLSVGHKMAGYLPSLFWGFITLGRLISIPVSSRMRPATMVFINVVGVVVTFLLLLIFSYNVIFLFVGTASLGLFLSSTFPSMLAYTEDILQYKGCATTVLVTGAGIGEMVLQMLVGLIFQAQGSYSFLVCGVIFGCLAFIFYILLLFFHRIHPELSSVLIQDKPLGVENSESYQR", "length": 512, "header": "tr|A0A8C2MLL0-1|A0A8C2MLL0_CRIGR Isoform 1 of Solute carrier family 60 member 1 OS=Cricetulus griseus OX=10029 GN=Mfsd4a PE=3 SV=1 CANONICAL=A0A8C2MLL0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MLL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0/entry", "sequence": { "sequence": "MGCDGRVSGLLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSALGGVFKRTLAQSLWALFTSTLAISLVFAVIPFCHDVKVLASVIALAGLAMGCIDTVANMQLVRIYQKDSAFFLQVLHFFVGFGALLSPLIADPFLSEANCFPANSTANASRSHLFHASRVLGQHHAATQPWSNQTMPRPSPKDSTENHVSYAFWIMALINLPVPLAVLFLLSKERLLTCAQRKPLLLSADELALETRPAEKEDGSSLAPKFQPHPGQEDLFSCCQRKNFQGAPCSFFAIHITAALVLFMTDGMMGAYSAFVYSYAVEKPLSVGHKMAGYLPSLFWGFITLGRLISIPVSSRMRPATMVFINVVGVVVTFLLLLIFSYNVIFLFVGTASLGLFLSSTFPSMLAYTEDILQYKGCATTVLVTGAGIGEMVLQMLVGLIFQAQGSYSFLVCGVIFGCLAFIFYILLLFFHRIHPELSSVLIQDKPLGVENSESYQR", "length": 512, "header": "tr|A0A8C2MLL0-1|A0A8C2MLL0_CRIGR Isoform 1 of Solute carrier family 60 member 1 OS=Cricetulus griseus OX=10029 GN=Mfsd4a PE=3 SV=1 CANONICAL=A0A8C2MLL0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760775", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760775", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 177, "end_pos": 179 }, { "start_pos": 202, "end_pos": 204 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MQD4-1", "uniprot_ac": "A0A8C2MQD4", "uniprot_id": "A0A8C2MQD4_CRIGR", "mass": { "chemical_mass": 51567.0, "monoisotopic_mass": 51567.0 }, "refseq": { "ac": "XP_027254643", "name": "uncharacterized protein C8orf34 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254643" }, "gene_names": [ { "name": "CUNH8orf34", "type": "recommended", "evidence": [ { "id": "A0A8C2MQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD4" } ] }, { "name": "CUNH8orf34", "type": "synonym", "evidence": [ { "id": "XP_027254643", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254643" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C8orf34 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C8orf34 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027254643", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254643" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254643", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254643" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQD4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH8orf34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD4", "locus": {} } ], "crossref": [ { "id": "cd22980", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22980", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766125", "url": "https://www.ncbi.nlm.nih.gov/gene/100766125", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040687", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040687", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766125", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766125", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MQD4", "url": "https://www.orthodb.org/?gene=A0A8C2MQD4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32000", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32000", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32000:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32000:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17824", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17824", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254643", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254643", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MLR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MLR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQD4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3C2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESETSEPKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWSWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETMAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDPWESEESCSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSAIEDDIDNEDDAMELLEDLDDLRMEGVTTLVPSGSKFNQGRPTHPAEPQAKVTLNICSRCARLQGDNLMERAEDTLQPFHSPEERIPDSLDSLPGTEETLMEEGEDLEKTSKLTEHGEDSSGGHSLKSYIEEDESLKQLQVVHQPWLLPSDTESEGVEAEQEKRTADLLCVPCSSCPTLIYSGLSVKQAKDISSGP", "length": 462, "header": "tr|A0A8C2MQD4-1|A0A8C2MQD4_CRIGR Isoform 1 of Uncharacterized protein C8orf34 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf34 PE=4 SV=1 CANONICAL=A0A8C2MQD4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MLR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLR1/entry", "sequence": { "sequence": "MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESETSEPKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWSWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETMAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDPWESEESCSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSAIEDDIDNEDDAMELLEDLDDLRMEGVTTLVPSGSKFNQGRPTHPAEPQAKVTLNICSRCARLQGDNLMERAEDTLQPFHSPEERIPDSLDSLPGTEETLMEEGEDLEKTSKLTEHDESLKQLQVVHQPWLLPSDTESEGVEAEQEKRTADLLCVPCSSCPTLIYSGLSVKQAKDISSGP", "length": 446, "header": "tr|A0A8C2MLR1-1|A0A8C2MQD4_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf34 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf34 PE=4 SV=1 CANONICAL=A0A8C2MQD4-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MQD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD4/entry", "sequence": { "sequence": "MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESETSEPKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWSWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETMAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDPWESEESCSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSAIEDDIDNEDDAMELLEDLDDLRMEGVTTLVPSGSKFNQGRPTHPAEPQAKVTLNICSRCARLQGDNLMERAEDTLQPFHSPEERIPDSLDSLPGTEETLMEEGEDLEKTSKLTEHGEDSSGGHSLKSYIEEDESLKQLQVVHQPWLLPSDTESEGVEAEQEKRTADLLCVPCSSCPTLIYSGLSVKQAKDISSGP", "length": 462, "header": "tr|A0A8C2MQD4-1|A0A8C2MQD4_CRIGR Isoform 1 of Uncharacterized protein C8orf34 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf34 PE=4 SV=1 CANONICAL=A0A8C2MQD4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GNZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNZ6/entry", "sequence": { "sequence": "MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESETSEPKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWSWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETMAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDPWESEESCSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSAIEDDIDNEDDAMELLEDLDDLRMEGVTTLVPSGSKFNQGRPTHPAEPQAKVTLNICSRLQGDNLMERAEDTLQPFHSPEERIPDSLDSLPGTEETLMEEGEDLEKTSKLTEHDESLKQLQVVHQPWLLPSDTESEGVEAEQEKRTADLLCVPCSSCPTLIYSGLSVKQAKDISSGP", "length": 443, "header": "tr|A0A9J7GNZ6-1|A0A9J7GNZ6_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf34 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=CUNH8orf34 PE=4 SV=1 CANONICAL=A0A8C2MQD4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3C2/entry", "sequence": { "sequence": "MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESETSEPKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWSWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETMAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDPWESEESCSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSAIEDDIDNEDDAMELLEDLDDLRMEGVTTLVPSGSKFNQGRPTHPAEPQAKVTLNICSRLQGDNLMERAEDTLQPFHSPEERIPDSLDSLPGTEETLMEEGEDLEKTSKLTEHGEDSSGGHSLKSYIEEDESLKQLQVVHQPWLLPSDTESEGVEAEQEKRTADLLCVPCSSCPTLIYSGLSVKQAKDISSGP", "length": 459, "header": "tr|A0A9J7K3C2-1|A0A9J7K3C2_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf34 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH8orf34 PE=4 SV=1 CANONICAL=A0A8C2MQD4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613854.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003501668", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501668" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLV4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tpm3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLV4", "locus": {} } ], "crossref": [ { "id": "100763482", "url": "https://www.ncbi.nlm.nih.gov/gene/100763482", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000533", "database": "InterPro", "categories": [ "Protein Classification" ] 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Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614102.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007643592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643592" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLY3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mfsd4b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3", "locus": {} } ], "crossref": [ { "id": "100771202", "url": "https://www.ncbi.nlm.nih.gov/gene/100771202", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771202", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771202", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IPWCKKA", "url": "https://omabrowser.org/oma/group/IPWCKKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MLY3", "url": "https://www.orthodb.org/?gene=A0A8C2MLY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23121", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23121:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23121:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007643592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643592", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MLY3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MLY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGGVLFGCINHFLLLGVSLSATTVGLYLTPFCKTAVLLVIMMSVFGISMGLLDTGGNVLILDLWGDEGAPHMQALHFSFALGAFLAPLLAKLAWGTSASTQNHTEPDFDLLMLNGSSEATSDSLFAVPEDMNLLWAYASIGTYVLVVSVFLFGLFCKKSSRQEKATVSAQEARRAKYHWALLCLLFIFFFFYVGAEVTYGSYVFSFATTHVGMKESEAAGLNSIFWGTFAACRGLAIFFATFLKPGTMIVLCNIGSLTSSLFLVLFDKSPLCLWIATSVYGASMAATFPSGISWIEQYTSISGKSAAFFVIGAALGEMAIPAIIGILQGHYPDLPVVLYTGLGSATFTAVLFPVMYKLATLPLGHQPKGRKSEDQRALLSSSELNDCEEESEEEDAEKWNEMDFEVVEMSDPMQESARDTTGEVLREPTPEASDHFLSKAYFSVSSSDPLVNHQDKRD", "length": 459, "header": "tr|A0A8C2MLY3-1|A0A8C2MLY3_CRIGR Isoform 1 of Sodium-dependent glucose transporter 1 OS=Cricetulus griseus OX=10029 GN=Mfsd4b PE=4 SV=1 CANONICAL=A0A8C2MLY3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MLY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3/entry", "sequence": { "sequence": "MIGGVLFGCINHFLLLGVSLSATTVGLYLTPFCKTAVLLVIMMSVFGISMGLLDTGGNVLILDLWGDEGAPHMQALHFSFALGAFLAPLLAKLAWGTSASTQNHTEPDFDLLMLNGSSEATSDSLFAVPEDMNLLWAYASIGTYVLVVSVFLFGLFCKKSSRQEKATVSAQEARRAKYHWALLCLLFIFFFFYVGAEVTYGSYVFSFATTHVGMKESEAAGLNSIFWGTFAACRGLAIFFATFLKPGTMIVLCNIGSLTSSLFLVLFDKSPLCLWIATSVYGASMAATFPSGISWIEQYTSISGKSAAFFVIGAALGEMAIPAIIGILQGHYPDLPVVLYTGLGSATFTAVLFPVMYKLATLPLGHQPKGRKSEDQRALLSSSELNDCEEESEEEDAEKWNEMDFEVVEMSDPMQESARDTTGEVLREPTPEASDHFLSKAYFSVSSSDPLVNHQDKRD", "length": 459, "header": "tr|A0A8C2MLY3-1|A0A8C2MLY3_CRIGR Isoform 1 of Sodium-dependent glucose transporter 1 OS=Cricetulus griseus OX=10029 GN=Mfsd4b PE=4 SV=1 CANONICAL=A0A8C2MLY3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLY3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLY3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771202", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771202", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YKY3-1", "protein_name": "Major facilitator superfamily domain containing 4B", "gene_name": "MFSD4B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGAERKKHVRFAGSAQVAAGPGPGPGPGPGPRLPAAPHAEVAVVGGRRCGEGAALRWCVSAALCAAFLGLGTSIAVLGPTFQNLADNVHKNVTDIYYIFVGRSLGYLGGSVLGGILFDHVNAHLLLAFSMLGTTAGLFAIPWCKRSLLLTALMSLIGAAMGVLDTGGNVLALNTWGTEAGPHLQALHFSFAMGAFVAPILAKMAMGNSEPRDLQAGENASQSVLSPVPTASATLALKHHLGVDFLWSYIVIGTYLLFVSFFFFILYSKSSSVRDKSKASAQKCKVAKYHHVLIILLFLFFLCYVGAEVTYGSYIFTYAKVFAEMKESEAAALNSVFWGAFAVCRAVSVFCAACLYPGTMIVLSLIGSAVSSSSLAFFAHYPISLWAGTAVYGASMATIFPSGISWIEQYTVIQGKSASLFVVGAALGEMCIPAVVGYLQGRFHHVPVVMYTALGTSAMTAVLFPVMYKLATASGESSREMSESEDRKALLSSSGLNEDEEDEEDAGEWNEADFEVIEMNDTLRNSVVETSLKAAGDSSSEASLQPHPADAGGDFPVAAGSSPGRKSMNVDREKND", "length": 576 }, "evidence": [ { "id": "A0A8C2MLY3", "url": "https://omabrowser.org/oma/group/A0A8C2MLY3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TA10-1", "protein_name": "Major facilitator superfamily domain containing 4B", "gene_name": "MFSD4B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLNKILFLNLLHAGGMSVAILGPTFQDLATNVNRNISRLSLIFVGRAFGYLGGSVIGGVLFDSMNHFLLLGVSMFATTVGLYLVPFCKTAVLLIVMMSTFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFLAPLLAKLALGTTVSAENRTEADFNQSAFNQSSEADSESLFGIPDDMNLLWAYAVIGTYIFVVALFFFALFLKKSSKQEKARVSAQRFRRAKYHNALLCLLFLFFFFYVGAEVTYGSYVFSFATTHAGMKEREAAGLNSIFWGTFAACRGMAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFNKSPVCLWIATSVYGASMATTFPSGVSWIEQYTTIHGKAAAFFVVGAALGEMAIPAVIGILQGKYPDLPVVLYTSLGSSIATAILFPVLYKLATLPLDRQRKEHRKSEDQKALLSSSGLNDYEEENEEDDAEKWNEMDFEVIEMNDTMRNSVIETSRNILMEPTAEVPNHSYSNVLMFESSPVNTGNSSVNYLARNQDKRD", "length": 523 }, "evidence": [ { "id": "A0A8C2MLY3", "url": "https://omabrowser.org/oma/group/A0A8C2MLY3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LTM4-1", "protein_name": "Major facilitator superfamily domain containing 4B1", "gene_name": "Mfsd4b4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPGARSSAGGAATLELELEFGGAGGQRLLQAGPGAENESEAVASVRSGSAQSVLRWFTTVVLCAAFLGLGLSVAILGPTFPDLARNVNRNISSLSLIFVGRASGYLCGSMIGGVLFDCINHFLLLGMSLSATTVGLYLMPFCKIAALLIVLMSVFGVSMGILDTGGNVLILDLWGDKGAPHMQALHFSFALGAFLAPLLAKLAWGTTASAQNHTESDFISLMLNRTSEAATDSVFAVPDDMNLLWTYASIGTYVLVVSVFLFALFCKKRSRQKKSSASAQGTRRAKYHRALLCLLFLFFFFYVGAEVTYGSYVFSFATTHVGMEESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVVSNIGSLASSFFLVLFDKSPLCLWIASSVYGASMAATFPSGISWIEQYTTLTGKSASFFVIGAALGEMAIPAVIGILQGHYPDLPVVLYTGLGSAIFTAVLFPVMYKLATLPLERQRKGRRKSEDQKALLSSSELHDCEEEIEEEEDAEKWNEMDFEVVEMNDPVQGSVRGTSGDVMGPTAEGSDQFLPDALSFEPLSASSSNSLANH", "length": 568 }, "evidence": [ { "id": "A0A8C2MLY3", "url": "https://omabrowser.org/oma/group/A0A8C2MLY3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "J3QNS5-1", "protein_name": "Major facilitator superfamily domain containing 4B4", "gene_name": "Mfsd4b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFNAEGLSVAILGPTFPDLAKNVNRNISSLSLIFVGRASGYLCGSMIGGVLFGCINHFLLLGVSLSATTVGLYLMPFCKTAALLIVMMSVFGVSMGILDTGGNVLILDLWGDKGAPHMQALHFSFALGAFLAPLLAKLAWGTTTSAQNYTEPQSDRLALNQSFEATSDSVFAVPDDMNLLWTYASIGTYVLVVSVFLFGLFCKKHSRQKKPRASAEGARRAKYHRALLCLLFLFFFFYVGAEVTYGSFVFSFAITHVGMEESEAAGLNSIFWGTFAACRGLAIFFATFLQPGTMIVLCNIGSLVSCFFLVLFDKSPLCLWIATSVYGASMAATFPSGISWIEQYTTLTGKSAAFFVIGAALGEMAIPAVIGILQGQYPDLPVVLYTCLGSAIFTAVLFPVMYKLATLPLECQHKGTRKREDQKALLSSSELHDCEEENEEDDAEKWNEMDFEVVEMSDPVQESARETCREEGSGQVLLDGLIAEPFSANSSNSLGNHQDKRD", "length": 503 }, "evidence": [ { "id": "A0A8C2MLY3", "url": "https://omabrowser.org/oma/group/A0A8C2MLY3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TF39-1", "protein_name": "Solute carrier family 60 member 2", "gene_name": "SLC60A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVPFCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFLAPLLAKLALGPTASAENHTESDFHPALNQSSDADSEALFGVPNDKNLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFFYVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDKNPICLWIATSVYGASMATTFPSGVSWIEQYTTIHGKSAAFFVIGASLGEMAIPAVIGILQGKYPDLPVVLYTSLGASIATGILFPVLYKLATSPLDRQRKEDRKSEDQKALLSSSGLNEYEEENEEEDAEKWNEMDFEMIETNDTMRHSIIETSRSSLTEPTAEVYNQYPSNALVFESSPFNTGSAHVKHLPETRTKGTNV", "length": 518 }, "evidence": [ { "id": "A0A8C2MLY3", "url": "https://omabrowser.org/oma/group/A0A8C2MLY3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MLY3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MLY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 115, "end_pos": 117 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MM00-1", "uniprot_ac": "A0A8C2MM00", "uniprot_id": "A0A8C2MM00_CRIGR", "mass": { "chemical_mass": 95100.0, "monoisotopic_mass": 95100.0 }, "refseq": { "ac": "XP_027281221", "name": "Fanconi anemia core complex-associated protein 100 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281221" }, "gene_names": [ { "name": "Faap100", "type": "recommended", "evidence": [ { "id": "A0A8C2MM00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ] }, { "name": "Faap100", "type": "synonym", "evidence": [ { "id": "XP_027281221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281221" } ] } ], "protein_names": [ { "name": "Fanconi anemia core complex-associated protein 100 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027281221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281221" }, { "id": "A0A8C2MM00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281221", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281221" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Faap100", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00", "locus": {} } ], "crossref": [ { "id": "100754573", "url": "https://www.ncbi.nlm.nih.gov/gene/100754573", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754573", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754573", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MM00", "url": "https://www.orthodb.org/?gene=A0A8C2MM00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14890", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14890", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14890:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14890:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281221", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281221", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MM00-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAAAAAAASASRVHYLSDLCCPLGGRAGPKPHVLRHQAEVFLSTGREFVYVYDREGGVLTAVYQFPHQVWHLQLLAARRALYVLCARTGIYCLSLDSRDRAEIQASCEDREDEAHPPPVIHVDPDACVLPDAALCAFTVLDDMLVTLVQGPTQWKMQLFERPCPGEAPRPGGQIGEVELSTCTPPGGVPGKPAAPCFLPVLCCTFPPDSRAPHGHPQGCGCLTLEEALFGLLFGADATLMQSPVILCGLPDGQLCCVVLKALVTCGLAPGDPKVLVKILHHLEEPVVFIGAVRAEPHAEEEQREPLPEENVHSDCLVALGHQGRTLAIKAGWSESGTLVPELREYCLPGPVLCAACGRDGRMYHSTPSNLCVVDLTRRDTPWSPEKADGAIGGLPSMLCPASLNICSVLTLTVSSGASTGGTELLALSSKGRLITCSLDLNSEVPVPPKMTMANAGQKIKELLLDIGDASERVSFLKKAVDQRNKAITSLNEAMNVSCALLSSQEGVRPISCTITTSWSRLELRDMLMATCTLENSSSFSLDQGWTLCIQVLTSSSALDLDGAGSTFTYTIPVDRLGPGSRREVTLPLGPSESGMLDLPVTMSCWLFYSLREVVGGALAPSDSLEVPYLETLPLNLPKQEGVCLPLCKRTVDMLQCLRFPGVSSQQPARAPCVPGPACEPVETFLKTCQTPGSEPAGAASLRAKYLPPSTASIRVSAVLLRTALEGGHSGSHLCSATLQWLLAENAAVTVVRAQKLSSIQGTAPDGTDVNLTVREVSVTDLSPAGPIQAVEIQVESSSLANMCRAHHAIIRRMQTMVTEQAAQGSSPPDLRMQYLHQIHANHQELLREVQTLRDQLCTEDEVRSYSTAQKLLQVYKQLRNPSLVLL", "length": 888, "header": "tr|A0A8C2MM00-1|A0A8C2MM00_CRIGR Isoform 1 of Fanconi anemia core complex-associated protein 100 isoform X4 OS=Cricetulus griseus OX=10029 GN=Faap100 PE=4 SV=1 CANONICAL=A0A8C2MM00-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MM00-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00/entry", "sequence": { "sequence": "MAGAAAAAAASASRVHYLSDLCCPLGGRAGPKPHVLRHQAEVFLSTGREFVYVYDREGGVLTAVYQFPHQVWHLQLLAARRALYVLCARTGIYCLSLDSRDRAEIQASCEDREDEAHPPPVIHVDPDACVLPDAALCAFTVLDDMLVTLVQGPTQWKMQLFERPCPGEAPRPGGQIGEVELSTCTPPGGVPGKPAAPCFLPVLCCTFPPDSRAPHGHPQGCGCLTLEEALFGLLFGADATLMQSPVILCGLPDGQLCCVVLKALVTCGLAPGDPKVLVKILHHLEEPVVFIGAVRAEPHAEEEQREPLPEENVHSDCLVALGHQGRTLAIKAGWSESGTLVPELREYCLPGPVLCAACGRDGRMYHSTPSNLCVVDLTRRDTPWSPEKADGAIGGLPSMLCPASLNICSVLTLTVSSGASTGGTELLALSSKGRLITCSLDLNSEVPVPPKMTMANAGQKIKELLLDIGDASERVSFLKKAVDQRNKAITSLNEAMNVSCALLSSQEGVRPISCTITTSWSRLELRDMLMATCTLENSSSFSLDQGWTLCIQVLTSSSALDLDGAGSTFTYTIPVDRLGPGSRREVTLPLGPSESGMLDLPVTMSCWLFYSLREVVGGALAPSDSLEVPYLETLPLNLPKQEGVCLPLCKRTVDMLQCLRFPGVSSQQPARAPCVPGPACEPVETFLKTCQTPGSEPAGAASLRAKYLPPSTASIRVSAVLLRTALEGGHSGSHLCSATLQWLLAENAAVTVVRAQKLSSIQGTAPDGTDVNLTVREVSVTDLSPAGPIQAVEIQVESSSLANMCRAHHAIIRRMQTMVTEQAAQGSSPPDLRMQYLHQIHANHQELLREVQTLRDQLCTEDEVRSYSTAQKLLQVYKQLRNPSLVLL", "length": 888, "header": "tr|A0A8C2MM00-1|A0A8C2MM00_CRIGR Isoform 1 of Fanconi anemia core complex-associated protein 100 isoform X4 OS=Cricetulus griseus OX=10029 GN=Faap100 PE=4 SV=1 CANONICAL=A0A8C2MM00-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL0/entry", "sequence": { "sequence": "MAGAAAAAAASASRVHYLSDLCCPLGGRAGPKPHVLRHQAEVFLSTGREFVYVYDREGGVLTAVYQFPHQVWHLQLLAARRALYVLCARTGIYCLSLDSRDRAEIQASCEDREDEAHPPPVIHVDPDACVLPDAALCAFTVLDDMLVTLVQGPTQWKMQLFERPCPGEAPRPGGQIGEVELSTCTPPGGVPGKPAAPCFLPVLCCTFPPDSRAPHGHPQGCGCLTLEEALFGLLFGADATLMQSPVILCGLPDGQLCCVVLKALVTCGLAPGDPKVLVKILHHLEEPVVFIGAVRAEPHAEEEQREPLPEENVHSDCLVALGHQGRTLAIKAGWSESGTLVPELREYCLPGPVLCAACGRDGRMYHSTPSNLCVVDLTRRDTPWSPEKADGAIGGLPSMLCPASLNICSVLTLTVSSGASTGGTELLALSSKGRLITCSLDLNSEVPVPPKMTMANAGQKIKELLLDIGDASERVSFLKKAVDQRNKAITSLNEAMNVSCALLSSQEGVRPISCTITTSWSRLELRDMLMATCTLENSSSFSLDQGWTLCIQVLTSSSALDLDGAGSTFTYTIPVDRLGPGSRREVTLPLGPSESGMLDLPVTMSCWLFYSLREVVGGALAPSDSLEVPYLETLPLNLPKQEGVCLPLCKRTVDMLQCLRFPGVSSQQPARAPCVPGPACEPVETFLKTCQTPGSEPAGAASLRAKYLPPSTASIRVSAVLLRTALEGGHSESPGVSEDP", "length": 740, "header": "tr|A0A9J7GBL0-1|A0A9J7GBL0_CRIGR Computationally mapped isoform of Fanconi anemia core complex-associated protein 100 isoform X3 OS=Cricetulus griseus OX=10029 GN=Faap100 PE=4 SV=1 CANONICAL=A0A8C2MM00-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUI5/entry", "sequence": { "sequence": "MAGAAAAAAASASRVHYLSDLCCPLGGRAGPKPHVLRHQAEVFLSTGREFVYVYDREGGVLTAVYQFPHQVWHLQLLAARRALYVLCARTGIYCLSLDSRDRAEIQASCEDREDEAHPPPVIHVDPDACVLPDAALCAFTVLDDMLVTLVQGPTQWKMQLFERPCPGEAPRPGGQIGEVELSTCTPPGGVPGKPAAPCFLPVLCCTFPPDSRAPHGHPQGCGCLTLEEALFGLLFGADATLMQSPVILCGLPDGQLCCVVLKALVTCGLAPGDPKVLVKILHHLEEPVVFIGAVRAEPHAEEEQREPLPEENVHSDCLVALGHQGRTLAIKAGWSESGTLVPELREYCLPGPVLCAACGRDGRMYHSTPSNLCVVDLTRRDTPWSPEKADGAIGGLPSMLCPASLNICSVLTLTVSSGASTGGTELLALSSKGRLITCSLDLNSEVPVPPKMTMANAGQKIKELLLDIGDASERVSFLKKAVDQRNKAITSLNEAMNVSCALLSSQEGVRPISCTITTSWSRLELRDMLMATCTLENSSSFSLDQGWTLCIQVLTSSSALDLDGAGSTFTYTIPVDRLGPGSRREVTLPLGPSESGMLDLPVTMSCWLFYSLREVVGGALAPSDSLEVPYLETLPLNLPKQEGVCLPLCKRTVDMLQCLRFPGVSSQQPARAPCVPGPACEPVETFLKTCQTPGSEPAGAASLRAKYLPPSTASIRVSAVLLRTALEGGHSGSHLCSATLQWLLAENAAVTVVRAQKLSSIQGTAPDGTDVNLTVREVSVTDLSPAGPIQAVEIQVESSSLANMCRAHHAIIRRMQTMVTEQAAQGSSPPDLRMQYLHQIHANHQYKVFVGEGPG", "length": 855, "header": "tr|A0A9J7JUI5-1|A0A9J7JUI5_CRIGR Computationally mapped isoform of Fanconi anemia core complex-associated protein 100 isoform X2 OS=Cricetulus griseus OX=10029 GN=Faap100 PE=4 SV=1 CANONICAL=A0A8C2MM00-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754573", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754573", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Fanconi anaemia nuclear complex", "id": "GO:0043240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043240", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "interstrand cross-link repair", "id": "GO:0036297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036297", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" }, { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" }, { "start_pos": 772, "end_pos": 774, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 497, "end_pos": 499 }, { "start_pos": 537, "end_pos": 539 }, { "start_pos": 772, "end_pos": 774 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MM25-1", "uniprot_ac": "A0A8C2MM25", "uniprot_id": "A0A8C2MM25_CRIGR", "mass": { "chemical_mass": 92960.0, "monoisotopic_mass": 92960.0 }, "refseq": { "ac": "XP_027275066", "name": "zinc finger RNA-binding protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275066" }, "gene_names": [ { "name": "Zfr2", "type": "recommended", "evidence": [ { "id": "A0A8C2MM25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ] }, { "name": "Zfr2", "type": "synonym", "evidence": [ { "id": "XP_027275066", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275066" } ] } ], "protein_names": [ { "name": "Zinc finger RNA-binding protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MM25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25/entry#names_and_taxonomy" } ] }, { "name": "zinc finger RNA-binding protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027275066", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275066" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275066", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275066" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zfr2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25", "locus": {} } ], "crossref": [ { "id": "100772752", "url": "https://www.ncbi.nlm.nih.gov/gene/100772752", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772752", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772752", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MM25", "url": "https://www.orthodb.org/?gene=A0A8C2MM25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45762", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45762", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45762:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45762:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07528", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07528", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20965", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20965", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027275066", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275066", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MM25-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G574", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G574", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G574-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G574-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASRSSGLAQGAGPSSSTQPFSAFPLRAAGASYAMQSTPGTESTASQALAPATQTPAPGGGGVPVGYGCSQPHSIPNSRPQDPVPMATHQQDGHSCGESKGSRSCEDTSEQPATASLGRSGPSSQRSDRPLKSQHVPQKQQASPTVPVGSDPWGGPGLGPWDPSFTSDTLPFLDRLPKPKAGPRPPSMHYCEVCRVSCAGPQTYRDHLEGQKHRKKQAAQRTGTPPSGGLRGSQSLHCGLCAVSCTGVDAYAAHMRGARHQKVFKLHSRLGKPIPSEPTTRSVTYTRGSDSTYETSVEHEAHTSHSSYTSGRLAKGSTTSHKGPPELQTVHSRPGERRPSHPKAEATKGCPGEASGTYGDIEPVGTEYVEEVRSDEGKVIRFRCKLCECNFNDRNARDMHLTGRRHRLQYRKKVDPTLPVAARPSGPMQRVLVRRLQRQRQQTQARLEDARRWSSELRQQEEHSRQPKEPSQPQVDEHPPGLPAWALPVTPAKPGMATSRRQSGRRPESSDDRHVMCKHASIYPTEEELQAIQTAVSHTERALRLVSDTLAEESSLNSTLAPAPPRILKGVARVGALAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELSIVAEDKYEVSSDHDANIVISACVEPGVKVTVSATSPLMREDPSVKRGLQDSLSDPEDVLDRERCLETLAALRHAKWFQARASGLQPCVIVIRVLRELCRCLPPWGALPAWAMELLVEKVLSSAPRPLSPGDAMRRVLEYVATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQRALRLVAFRQIHKVLHMEQLPPRTRFGARARKRIREASQAQEGAGERKRGRQGTAGLL", "length": 855, "header": "tr|A0A8C2MM25-1|A0A8C2MM25_CRIGR Isoform 1 of Zinc finger RNA-binding protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfr2 PE=4 SV=1 CANONICAL=A0A8C2MM25-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MM25-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25/entry", "sequence": { "sequence": "MAASRSSGLAQGAGPSSSTQPFSAFPLRAAGASYAMQSTPGTESTASQALAPATQTPAPGGGGVPVGYGCSQPHSIPNSRPQDPVPMATHQQDGHSCGESKGSRSCEDTSEQPATASLGRSGPSSQRSDRPLKSQHVPQKQQASPTVPVGSDPWGGPGLGPWDPSFTSDTLPFLDRLPKPKAGPRPPSMHYCEVCRVSCAGPQTYRDHLEGQKHRKKQAAQRTGTPPSGGLRGSQSLHCGLCAVSCTGVDAYAAHMRGARHQKVFKLHSRLGKPIPSEPTTRSVTYTRGSDSTYETSVEHEAHTSHSSYTSGRLAKGSTTSHKGPPELQTVHSRPGERRPSHPKAEATKGCPGEASGTYGDIEPVGTEYVEEVRSDEGKVIRFRCKLCECNFNDRNARDMHLTGRRHRLQYRKKVDPTLPVAARPSGPMQRVLVRRLQRQRQQTQARLEDARRWSSELRQQEEHSRQPKEPSQPQVDEHPPGLPAWALPVTPAKPGMATSRRQSGRRPESSDDRHVMCKHASIYPTEEELQAIQTAVSHTERALRLVSDTLAEESSLNSTLAPAPPRILKGVARVGALAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELSIVAEDKYEVSSDHDANIVISACVEPGVKVTVSATSPLMREDPSVKRGLQDSLSDPEDVLDRERCLETLAALRHAKWFQARASGLQPCVIVIRVLRELCRCLPPWGALPAWAMELLVEKVLSSAPRPLSPGDAMRRVLEYVATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQRALRLVAFRQIHKVLHMEQLPPRTRFGARARKRIREASQAQEGAGERKRGRQGTAGLL", "length": 855, "header": "tr|A0A8C2MM25-1|A0A8C2MM25_CRIGR Isoform 1 of Zinc finger RNA-binding protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfr2 PE=4 SV=1 CANONICAL=A0A8C2MM25-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G574-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G574/entry", "sequence": { "sequence": "MKALRWHISTQPFSAFPLRAAGASYAMQSTPGTESTASQALAPATQTPAPGGGGVPVGYGCSQPHSIPNSRPQDPVPMATHQQDGHSCGESKGSRSCEDTSEQPATASLGRSGPSSQRSDRPLKSQHVPQKQQASPTVPVGSDPWGGPGLGPWDPSFTSDTLPFLDRLPKPKAGPRPPSMHYCEVCRVSCAGPQTYRDHLEGQKHRKKQAAQRTGTPPSGGLRGSQSLHCGLCAVSCTGVDAYAAHMRGARHQKVFKLHSRLGKPIPSEPTTRSVTYTRGSDSTYETSVEHEAHTSHSSYTSGRLAKGSTTSHKGPPELQTVHSRPGERRPSHPKAEATKGCPGEASGTYGDIEPVGTEYVEEVRSDEGKVIRFRCKLCECNFNDRNARDMHLTGRRHRLQYRKKVDPTLPVAARPSGPMQRVLVRRLQRQRQQTQARLEDARRWSSELRQQEEHSRQPKEPSQPQVDEHPPGLPAWALPVTPAKPGMATSRRQSGRRPESSDDRHVMCKHASIYPTEEELQAIQTAVSHTERALRLVSDTLAEESSLNSTLAPAPPRILKGVARVGALAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELSIVAEDKYEVSSDHDANIVISACVEPGVKVTVSATSPLMREDPSVKRGLQDSLSDPEDVLDRERCLETLAALRHAKWFQARASGLQPCVIVIRVLRELCRCLPPWGALPAWAMELLVEKVLSSAPRPLSPGDAMRRVLEYVATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQRALRLVAFRQIHKVLHMEQLPPRTRFGARARKRIREASQAQEGAGERKRGRQGTAGLL", "length": 846, "header": "tr|A0A9J7G574-1|A0A9J7G574_CRIGR Computationally mapped isoform of Zinc finger RNA-binding protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Zfr2 PE=4 SV=1 CANONICAL=A0A8C2MM25-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTQ6/entry", "sequence": { "sequence": "MAASRSSGLAQGAGPSSSTQPFSAFPLRAAGASYAMQSTPGTESTASQALAPATQTPAPGGGGVPVGYGCSQPHSIPNSRPQDPVPMATHQDGHSCGESKGSRSCEDTSEQPATASLGRSGPSSQRSDRPLKSQHVPQKQQASPTVPVGSDPWGGPGLGPWDPSFTSDTLPFLDRLPKPKAGPRPPSMHYCEVCRVSCAGPQTYRDHLEGQKHRKKQAAQRTGTPPSGGLRGSQSLHCGLCAVSCTGVDAYAAHMRGARHQKVFKLHSRLGKPIPSEPTTRSVTYTRGSDSTYETSVEHEAHTSHSSYTSGRLAKGSTTSHKGPPELQTVHSRPGERRPSHPKAEATKGCPGEASGTYGDIEPVGTEYVEEVRSDEGKVIRFRCKLCECNFNDRNARDMHLTGRRHRLQYRKKVDPTLPVAARPSGPMQRVLVRRLQRQRQQTQARLEDARRWSSELRQQEEHSRQPKEPSQPQVDEHPPGLPAWALPVTPAKPGMATSRRQSGRRPESSDDRHVMCKHASIYPTEEELQAIQTAVSHTERALRLVSDTLAEESSLNSTLAPAPPRILKGVARVGALAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELSIVAEDKYEVSSDHDANIVISACVEPGVKVTVSATSPLMREDPSVKRGLQDSLSDPEDVLDRERCLETLAALRHAKWFQARASGLQPCVIVIRVLRELCRCLPPWGALPAWAMELLVEKVLSSAPRPLSPGDAMRRVLEYVATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQRALRLVAFRQIHKVLHMEQLPPRTRFGARARKRIREASQAQEGAGERKRGRQGTAGLL", "length": 854, "header": "tr|A0A9J7JTQ6-1|A0A9J7JTQ6_CRIGR Computationally mapped isoform of Zinc finger RNA-binding protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zfr2 PE=4 SV=1 CANONICAL=A0A8C2MM25-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 491, "start_aa": "Thr", "end_pos": 491, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr491", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772752", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772752", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "pmid": "" }, { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "pmid": "" }, { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "precatalytic spliceosome", "id": "GO:0071011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071011", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 558, "end_pos": 560, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MM25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM25" }, { "id": "PS51703", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51703" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DZF", "eco_id": "ECO_0000259", "start_pos": 494, "end_pos": 851, "start_aa": "Lys", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 491 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 558, "end_pos": 560 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MM26-1", "uniprot_ac": "A0A8C2MM26", "uniprot_id": "A0A8C2MM26_CRIGR", "mass": { "chemical_mass": 38285.0, "monoisotopic_mass": 38285.0 }, "refseq": { "ac": "XP_027259296", "name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259296" }, "gene_names": [ { "name": "Ndufaf6", "type": "recommended", "evidence": [ { "id": "A0A8C2MM26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM26" } ] }, { "name": "Ndufaf6", "type": "synonym", "evidence": [ { "id": "XP_027259296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259296" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6", "type": "recommended", "evidence": [ { "id": "A0A8C2MM26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM26/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027259296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259296" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259296" } ] }, { "annotation": "Involved in the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) at early stages. 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RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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"https://www.uniprot.org/uniprotkb/A0A8C2MM42/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614036.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642860", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642860" } ] }, { "annotation": "May act as a GTPase-activating protein for Rab family protein(s).", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM42#function" }, { "database": "UniProtKB", "id": "ARBA00043879", "url": "https://www.uniprot.org/uniprotkb/ARBA00043879#function" }, { "database": "UniProtKB", "id": "A0A9J7F8N4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8N4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM42" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tbc1d22b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM42", "locus": {} } ], "crossref": [ { "id": "100751571", "url": "https://www.ncbi.nlm.nih.gov/gene/100751571", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751571", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751571", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SCYNIFN", "url": "https://omabrowser.org/oma/group/SCYNIFN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MM42", "url": "https://www.orthodb.org/?gene=A0A8C2MM42", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF462", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF462", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642860", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642860", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MM42", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MM42-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8N4", "url": 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This record is derived from a genomic sequence (NW_003613799.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639540", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639540" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MM68", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM68" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gatd3a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM68", "locus": {} } ], "crossref": [ { "id": "cd03133", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03133", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762424", "url": "https://www.ncbi.nlm.nih.gov/gene/100762424", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762424", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762424", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AQVQCFA", "url": "https://omabrowser.org/oma/group/AQVQCFA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MM68", "url": "https://www.orthodb.org/?gene=A0A8C2MM68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10224:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10224:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007639540", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639540", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MM68", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MM68-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVRALVAPRLVSALAPLSGRHHAPSQRAALHGSAPRPGARVALVLSGCGVYDGTEIHEASAVLVHLSRGGAEVQIFAPDVPQMHVIDHTKGQPSESESRNVLAESARIARGKITNLAQLNVANHDAAIFPGGFGAAKNLSTFAVDGKDCKVNKEVERVLKEFHGAKKPIGLCCIAPVLAAKVIKGVEVTVGHEQEEGGKWPYAGTAEAIKALGAKHCVKGVTEAHVDQKNKVVTTPAFMCETALHHIHDGIGAMVKKVLELAGK", "length": 266, "header": "tr|A0A8C2MM68-1|A0A8C2MM68_CRIGR Isoform 1 of Glutamine amidotransferase-like class 1 domain-containing protein 3A, mitochondrial OS=Cricetulus griseus OX=10029 GN=Gatd3a PE=4 SV=1 CANONICAL=A0A8C2MM68-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MM68-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM68/entry", "sequence": { "sequence": "MAAVRALVAPRLVSALAPLSGRHHAPSQRAALHGSAPRPGARVALVLSGCGVYDGTEIHEASAVLVHLSRGGAEVQIFAPDVPQMHVIDHTKGQPSESESRNVLAESARIARGKITNLAQLNVANHDAAIFPGGFGAAKNLSTFAVDGKDCKVNKEVERVLKEFHGAKKPIGLCCIAPVLAAKVIKGVEVTVGHEQEEGGKWPYAGTAEAIKALGAKHCVKGVTEAHVDQKNKVVTTPAFMCETALHHIHDGIGAMVKKVLELAGK", "length": 266, "header": "tr|A0A8C2MM68-1|A0A8C2MM68_CRIGR Isoform 1 of Glutamine amidotransferase-like class 1 domain-containing protein 3A, mitochondrial OS=Cricetulus griseus OX=10029 GN=Gatd3a PE=4 SV=1 CANONICAL=A0A8C2MM68-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"evidence": [ { "id": "A0A8C2MM68", "url": "https://omabrowser.org/oma/group/A0A8C2MM68/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1QCN0-1", "protein_name": "Glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial", "gene_name": "gatd3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSPLRTMISRLSLFRPAHTRYAAAAHFHATSNCSGARVAVVLSGCGVFDGTEIHEASAILVHLSRGGAEVQMFAPDVSQMHVIDHGKGQPSETESRNVLSESARIARGNITDLAKLSASNHDAIIFPGGFGAAKNLSTFAIDGMDCEVNKEVERVLKDFHKAGKPIGLCCISPVLAAKVLPGVDVTVGHEEEQGGKWPYAGTTQTITALGAKHTVKDVTEAHVDQKNKVVTTPAFMCDTKLHLIFDGIGAMVRDVLKLSGK", "length": 262 }, "evidence": [ { "id": "A0A8C2MM68", "url": "https://omabrowser.org/oma/group/A0A8C2MM68/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P56571-1", "protein_name": "ES1 protein homolog, mitochondrial", "gene_name": "", "tax_id": 10116, "organism": "Rattus 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MMA1-1", "uniprot_ac": "A0A8C2MMA1", "uniprot_id": "A0A8C2MMA1_CRIGR", "mass": { "chemical_mass": 61635.0, "monoisotopic_mass": 61635.0 }, "refseq": { "ac": "XP_003496209", "name": "leucine-rich repeat LGI family member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496209" }, "gene_names": [ { "name": "Lgi3", "type": "recommended", "evidence": [ { "id": "A0A8C2MMA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ] }, { "name": "Lgi3", "type": "synonym", "evidence": [ { "id": "XP_003496209", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496209" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat LGI family member 3", "type": "synonym", "evidence": [ { "id": "A0A8C2MMA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat LGI family member 3", "type": "synonym", "evidence": [ { "id": "XP_003496209", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496209" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613613.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496209", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496209" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lgi3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1", "locus": {} } ], "crossref": [ { "id": "100766474", "url": "https://www.ncbi.nlm.nih.gov/gene/100766474", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011041", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011041", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766474", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766474", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WDTNIDK", "url": "https://omabrowser.org/oma/group/WDTNIDK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MMA1", "url": "https://www.orthodb.org/?gene=A0A8C2MMA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24367", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24367", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24367:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24367:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496209", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496209", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MMA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLGARLGPGRRLLVLSTLGFCLMLQASAKRPPKTPPCPPSCSCTRDTAFCVDSKAVPKNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFVENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNALNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTVLKWDYVERQLRDYDRIPAPSAVHCKPMVVDGQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRSQKQFVVQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGHRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA", "length": 548, "header": "tr|A0A8C2MMA1-1|A0A8C2MMA1_CRIGR Isoform 1 of Leucine-rich repeat LGI family member 3 OS=Cricetulus griseus OX=10029 GN=Lgi3 PE=4 SV=1 CANONICAL=A0A8C2MMA1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MMA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1/entry", "sequence": { "sequence": "MAGLGARLGPGRRLLVLSTLGFCLMLQASAKRPPKTPPCPPSCSCTRDTAFCVDSKAVPKNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFVENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNALNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTVLKWDYVERQLRDYDRIPAPSAVHCKPMVVDGQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRSQKQFVVQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGHRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA", "length": 548, "header": "tr|A0A8C2MMA1-1|A0A8C2MMA1_CRIGR Isoform 1 of Leucine-rich repeat LGI family member 3 OS=Cricetulus griseus OX=10029 GN=Lgi3 PE=4 SV=1 CANONICAL=A0A8C2MMA1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766474", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766474", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BHH5-1", "protein_name": "Leucine rich repeat LGI family member 3", "gene_name": "LGI3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRPGPQALLSVATPRPGLPLRPARPRRPPPPPPQSASSPAGQPWARPGLRASLPASGSQERAGEGTAAQGPRSLSRLRAAGALAAAAAAGGREVPVPARAVAQSRWLELTGSMAGPRARRGSGLGLLALSTLGLCLMLQVGAKRPPKTPPCPPSCSCTRDTAFCVDSKAVPRNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNSLNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDSQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGRRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA", "length": 661 }, "evidence": [ { "id": "A0A8C2MMA1", "url": "https://omabrowser.org/oma/group/A0A8C2MMA1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D3ZN61-1", "protein_name": "Leucine-rich repeat LGI family, member 3", "gene_name": "Lgi3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARLRARRGPMCRLLVLSTLGFYLMLQASAKRPPKTPPCPPSCSCTRDTAFCVDSKSVPKNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENNDIWGLSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNALNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDGQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWFFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGHRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA", "length": 548 }, "evidence": [ { "id": "A0A8C2MMA1", "url": "https://omabrowser.org/oma/group/A0A8C2MMA1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BFY8-1", "protein_name": "Leucine rich repeat LGI family member 3", "gene_name": "LGI3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGLQARRVSGLRLLALSTLGLCLMLQVGAKRPPKTPPCPPSCSCTRDTAFCVDSKAVPRNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNSLNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDSQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRWHQNGFYSHQALHPWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGARFSEVQALPSRGSLALQPFLVGGRRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA", "length": 548 }, "evidence": [ { "id": "A0A8C2MMA1", "url": "https://omabrowser.org/oma/group/A0A8C2MMA1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8K406-1", "protein_name": "Leucine-rich repeat LGI family member 3", "gene_name": "Lgi3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGLRARRGPGRRLLVLSTLGFCLMLQVSAKRPPKTPPCPPSCSCTRDTAFCVDSKSVPKNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFIGLSHLQYLFIENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNALNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDGQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWFFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRSQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGHRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA", "length": 548 }, "evidence": [ { "id": "A0A8C2MMA1", "url": "https://omabrowser.org/oma/group/A0A8C2MMA1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N145-1", "protein_name": "Leucine-rich repeat LGI family member 3", "gene_name": "LGI3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGLRARGGPGPGLLALSALGFCLMLQVSAKRPPKTPPCPPSCSCTRDTAFCVDSKAVPRNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILNDLDLRGNSLNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLAFPAVSAEPFLYSSDLYLALAQPGVSACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDSQLYVVVAQLFGGSYIYHWDPNTTRFTRLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRWHQNGFYSHQALHPWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGRRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHIVVDLSA", "length": 548 }, "evidence": [ { "id": "A0A8C2MMA1", "url": "https://omabrowser.org/oma/group/A0A8C2MMA1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ], "pmid": "" }, { "name": "synaptic vesicle", "id": "GO:0008021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008021", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ], "pmid": "" }, { "name": "juxtaparanode region of axon", "id": "GO:0044224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044224", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of exocytosis", "id": "GO:0017157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017157", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMA1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MMA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMA1" }, { "id": "SM00082", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRCT", "eco_id": "ECO_0000259", "start_pos": 170, "end_pos": 219, "start_aa": "Asn", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256188", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256188" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Focad", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3", "locus": {} } ], "crossref": [ { "id": "100756324", "url": "https://www.ncbi.nlm.nih.gov/gene/100756324", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756324", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756324", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MMF3", "url": "https://www.orthodb.org/?gene=A0A8C2MMF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16212", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16212", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16212:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16212:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256188", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256188", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MMF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MMF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPP8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K357", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K357", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K357-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K357-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQATNQTAALNLLWEKCCSDNVVVRTACCEGLVALVAQGHAEFSYVLNGILNLIPSTRNMPGLIKALVKLLQMQALKEGQSGEKDIQDIYTIRNHPHPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEVSCIQIMAPFLWYLYCEPSQLEEHTKLRLSLLKVLLQPRGLCDEAKPSVLEQHILQLCCNMVPSLQMGDLTQTTEMMLFIEEVYLSLLRHPVFWKSQLTQLTLQLLCICEVSLKITGECSSLIQLLECSIELLGEDFPVKLVIIGIALLLLQTPASQQKPILNLALKLLSLAEGQKIPKASLLLVVPLLQILSSTTLEECLAMGEEGPSRQQLALNLLEVLQRECYGDDHHMISCRLTFPITSMYGSIFTAWRVLEVIGEDSAASDWLAAVESLLPVTTVIPTHVFLLLAHLLIEDAGQNLQQILKVTAQLAQADSSQVPNLIPVLMFKLGRPLEPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVSKELQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKDPIVASAAYKSLSHFSAGDHTILHLPEKIRPEMPAPDELDEEEVVDLSIPGSCYIRLLTITASSVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGMRSDQGKTVSGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVPMYQSKDGKPLNRLMASRGRNFKQTSLALVHEVHVQPSEWHHALFLPQAWLAYMTRAYHAVLQGRIAELDLQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPMVKGNALLALSSLAVVVSKHEASLSSDSDGVLEVQPNFLPVKEWVSMVLNTLLVIVDSHYRPRGQLFSCFYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALENCCFDPSLEHNTGCVLGVGLALSLMSHSSHMESRVHVAASLRKLSTYLDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEAVEAEDIMNKLQLLVENNQQTSGFTLALGNLVHGLSVCGHGKAEDLGNRLLPNWIKVVLTEGASTMLCLAALHGLVALVGADADVMQLKSEAIQSSHFQARLNEVIRTLTEVINVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFVTGGKKGPEAVPPSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAAALLGLWVMPPLIHGLSLNIKRSLLVSMSLWVKHVSDEQIQAFVENLVVAVFKAASPPSHPELCSSALQGLSQAMKLPSPSHHLWSLLCDATGKIFDLLPNRIRRSELELYISVAKCLSEMTDEGANQISQINKDNIEKAAFVKLYLISQGRLPLMSLMDLITAAVQHHEKEPLAWMILHSLYQARIVSHANTGVLKRLEWLLELMGYMRNLAYQQPSVQSVALDEALDYLLLIFAAAVVAWADHEAPLLLGLSASWLPWHRENGPGGPAATLLGKSPMHRVTVQEVLTLLPSSMLLLLQKDPWREQTQKFIDWLFSIMEIPNEAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYGW", "length": 1798, "header": "tr|A0A8C2MMF3-1|A0A8C2MMF3_CRIGR Isoform 1 of Focadhesin isoform X6 OS=Cricetulus griseus OX=10029 GN=Focad PE=4 SV=1 CANONICAL=A0A8C2MMF3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MMF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3/entry", "sequence": { "sequence": "MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQATNQTAALNLLWEKCCSDNVVVRTACCEGLVALVAQGHAEFSYVLNGILNLIPSTRNMPGLIKALVKLLQMQALKEGQSGEKDIQDIYTIRNHPHPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEVSCIQIMAPFLWYLYCEPSQLEEHTKLRLSLLKVLLQPRGLCDEAKPSVLEQHILQLCCNMVPSLQMGDLTQTTEMMLFIEEVYLSLLRHPVFWKSQLTQLTLQLLCICEVSLKITGECSSLIQLLECSIELLGEDFPVKLVIIGIALLLLQTPASQQKPILNLALKLLSLAEGQKIPKASLLLVVPLLQILSSTTLEECLAMGEEGPSRQQLALNLLEVLQRECYGDDHHMISCRLTFPITSMYGSIFTAWRVLEVIGEDSAASDWLAAVESLLPVTTVIPTHVFLLLAHLLIEDAGQNLQQILKVTAQLAQADSSQVPNLIPVLMFKLGRPLEPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVSKELQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKDPIVASAAYKSLSHFSAGDHTILHLPEKIRPEMPAPDELDEEEVVDLSIPGSCYIRLLTITASSVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGMRSDQGKTVSGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVPMYQSKDGKPLNRLMASRGRNFKQTSLALVHEVHVQPSEWHHALFLPQAWLAYMTRAYHAVLQGRIAELDLQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPMVKGNALLALSSLAVVVSKHEASLSSDSDGVLEVQPNFLPVKEWVSMVLNTLLVIVDSHYRPRGQLFSCFYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALENCCFDPSLEHNTGCVLGVGLALSLMSHSSHMESRVHVAASLRKLSTYLDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEAVEAEDIMNKLQLLVENNQQTSGFTLALGNLVHGLSVCGHGKAEDLGNRLLPNWIKVVLTEGASTMLCLAALHGLVALVGADADVMQLKSEAIQSSHFQARLNEVIRTLTEVINVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFVTGGKKGPEAVPPSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAAALLGLWVMPPLIHGLSLNIKRSLLVSMSLWVKHVSDEQIQAFVENLVVAVFKAASPPSHPELCSSALQGLSQAMKLPSPSHHLWSLLCDATGKIFDLLPNRIRRSELELYISVAKCLSEMTDEGANQISQINKDNIEKAAFVKLYLISQGRLPLMSLMDLITAAVQHHEKEPLAWMILHSLYQARIVSHANTGVLKRLEWLLELMGYMRNLAYQQPSVQSVALDEALDYLLLIFAAAVVAWADHEAPLLLGLSASWLPWHRENGPGGPAATLLGKSPMHRVTVQEVLTLLPSSMLLLLQKDPWREQTQKFIDWLFSIMEIPNEAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYGW", "length": 1798, "header": "tr|A0A8C2MMF3-1|A0A8C2MMF3_CRIGR Isoform 1 of Focadhesin isoform X6 OS=Cricetulus griseus OX=10029 GN=Focad PE=4 SV=1 CANONICAL=A0A8C2MMF3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGU2/entry", "sequence": { "sequence": "MVFQKRYTKPQTRNMPGLIKALVKLLQMQALKEGQSGEKDIQDIYTIRNHPHPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEVSCIQIMAPFLWYLYCEPSQLEEHTKLRLSLLKVLLQPRGLCDEAKPSVLEQHILQLCCNMVPSLQMGDLTQTTEMMLFIEEVYLSLLRHPVFWKSQLTQLTLQLLCICEVSLKITGECSSLIQLLECSIELLGEDFPVKLVIIGIALLLLQTPASQQKPILNLALKLLSLAEGQKIPKASLLLVVPLLQILSSTTLEECLAMGEEGPSRQQLALNLLEVLQRECYGDDHHMISCRLTFPITSMYGSIFTAWRVLEVIGEDSAASDWLAAVESLLPVTTVIPTHVFLLLAHLLIEDAGQNLQQILKVTAQLAQADSSQVPNLIPVLMFKLGRPLEPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVSKELQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKDPIVASAAYKSLSHFSAGDHTILHLPEKIRPEMPAPDELDEEEVVDLSIPGSCYIRLLTITASSVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGMRSDQGKTVSGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVPMYQSKDGKPLNRLMASRGRNFKQTSLALVHEVHVQPSEWHHALFLPQAWLAYMTRAYHAVLQGRIAELDLQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPMVKGNALLALSSLAVVVSKHEASLSSDSDGVLEVQPNFLPVKEWVSMVLNTLLVIVDSHYRPRGQLFSCFYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALENCCFDPSLEHNTGCVLGVGLALSLMSHSSHMESRVHVAASLRKLSTYLDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEAVEAEDIMNKLQLLVENNQQTSGFTLALGNLVHGLSVCGHGKAEDLGNRLLPNWIKVVLTEGASTMLCLAALHGLVALVGADADVMQLKSEAIQSSHFQARLNEVIRTLTEVINVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFVTGGKKGPEAVPPSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAAALLGLWVMPPLIHGLSLNIKRSLLVSMSLWVKHVSDEQIQAFVENLVVAVFKAASPPSHPELCSSALQGLSQAMKLPSPSHHLWSLLCDATGKIFDLLPNRIRRSELELYISVAKCLSEMTDEGANQISQINKDNIEKAAFVKLYLISQGRLPLMSLMDLITAAVQHHEKEPLAWMILHSLYQARIVSHANTGVLKRLEWLLELMGYMRNLAYQQPSVQSVALDEALDYLLLIFAAAVVAWADHEAPLLLGLSASWLPWHRENGPGGPAATLLGKSPMHRVTVQEVLTLLPSSMLLLLQKDPWREQTQKFIDWLFSIMEIPNEAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYGW", "length": 1715, "header": "tr|A0A9J7FGU2-1|A0A9J7FGU2_CRIGR Computationally mapped isoform of Focadhesin isoform X8 OS=Cricetulus griseus OX=10029 GN=Focad PE=4 SV=1 CANONICAL=A0A8C2MMF3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GPP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPP8/entry", "sequence": { "sequence": "MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQATNQTAALNLLWEKCCSDNVVVRTACCEGLVALVAQGHAEFSYVLNGILNLIPSTRNMPGLIKALVKLLQMQALKEGQSGEKDIQDIYTIRNHPHPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEVSCIQIMAPFLWYLYCEPSQLEEHTKLRLSLLKVLLQPRGLCDEAKPSVLEQHILQLCCNMVPSLQMGDLTQTTEMMLFIEEVYLSLLRHPVFWKSQLTQLTLQLLCICEVSLKITGECSSLIQLLECSIELLGEDFPVKLVIIGIALLLLQTPASQQKPILNLALKLLSLAEGQKIPKASLLLVVPLLQILSSTTLEECLAMGEEGPSRQQLALNLLEVLQRECYGDDHHMISCRLTFPITSMYGSIFTAWRVLEVIGEDSAASDWLAAVESLLPVTTVIPTHVFLLLAHLLIEDAGQNLQQILKVTAQLAQADSSQVPNLIPVLMFKLGRPLEPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVSKELQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKDPIVASAAYKSLSHFSAGDHTILHLPEKIRPEMPAPDELDEEEVVDLSIPGSCYIRLLTITASSVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGMRSDQGKTVSGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVPMYQSKDGKPLNRLMASRGRNFKQTSLALVHEVHVQPSEWHHALFLPQAWLAYMTRAYHAVLQGRIAELDLQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPMVKGNALLALSSLAVVVSKHEASLSSDSDGVLEVQPNFLPVKEWVSMVLNTLLVIVDSHYRPRGQLFSCFYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALENCCFDPSLEHNTGCVLGVGLALSLMSHSSHMESRVHVAASLRKLSTYLDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEAVEAEDIMNKLQLLVENNQQTSGFTLALGNLVHGLSVCGHGKAEDLGNRLLPNWIKVVLTEGASTMLCLAALHGLVALVGADADVMQLKSEAIQSSHFQARLNEVIRTLTEVINVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFVTGGKKGPEAVPPSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAAALLGLWVMPPLIHGLSLNIKRSLLVSMSLWVKHVSDEQIQAFVENLVVAVFKAASPPSHPELCSSALQGLSQAMKLPSPSHHLWSLLCDATGKIFDLLPNRIRRSELELYISVAKCLSEMTDEGANQISQINKDNIEKAAFVKLYLISQGRLPLMSLMDLITAAVQHHEKEPLAWMILHSLYQARIVSHANTGFGLLAAYICSCSGGVGRP", "length": 1651, "header": "tr|A0A9J7GPP8-1|A0A9J7GPP8_CRIGR Computationally mapped isoform of Focadhesin isoform X9 OS=Cricetulus griseus OX=10029 GN=Focad PE=4 SV=1 CANONICAL=A0A8C2MMF3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K357-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K357/entry", "sequence": { "sequence": "MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQATNQTAALNLLWEKCCSDNVVVRTACCEGLVALVAQGHAEFSYVLNGILNLIPSTRNMPGLIKALVKLLQMQALKEGQSGEKDIQDIYTIRNHPHPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEVSCIQIMAPFLWYLYCEPSQLEEHTKLRLSLLKVLLQPRGLCDEAKPSVLEQHILQLCCNMVPSLQMGDLTQTTEMMLFIEEVYLSLLRHPVFWKSQLTQLTLQLLCICEVSLKITGECSSLIQLLECSIELLGEDFPVKLVIIGIALLLLQTPASQQKPILNLALKLLSLAEGQKIPKASLLLVVPLLQILSSTTLEECLAMGEEGPSRQQLALNLLEVLQRECYGDDHHMISCRLTFPITSMYGSIFTAWRVLEVIGEDSAASDWLAAVESLLPVTTVIPTHVFLLLAHLLIEDAGQNLQQILKVTAQLAQADSSQVPNLIPVLMFKLGRPLEPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVSKELQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKDPIVASAAYKSLSHFSAGDHTILHLPEKIRPEMPAPDELDEEEVVDLSIPGSCYIRLLTITASSVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGMRSDQGKTVSGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVPMYQSKDGKPLNRLMASRGRNFKQTSLALVHEVHVQPSEWHHALFLPQAWLAYMTRAYHAVLQGRIAELDLQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPMVKGNALLALSSLAVVVSKHEASLSSDSDGVLEVQPNFLPVKEWVSMVLNTLLVIVDSHYRPRGQLFSCFYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALENCCFDPSLEHNTGCVLGVGLALSLMSHSSHMESRVHVAASLRKLSTYLDDSGSQSRTFQETSGFTLALGNLVHGLSVCGHGKAEDLGNRLLPNWIKVVLTEGASTMLCLAALHGLVALVGADADVMQLKSEAIQSSHFQARLNEVIRTLTEVINVSGVIGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFVTGGKKGPEAVPPSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAAALLGLWVMPPLIHGLSLNIKRSLLVSMSLWVKHVSDEQIQAFVENLVVAVFKAASPPSHPELCSSALQGLSQAMKLPSPSHHLWSLLCDATGKIFDLLPNRIRRSELELYISVAKCLSEMTDEGANQISQINKDNIEKAAFVKLYLISQGRLPLMSLMDLITAAVQHHEKEPLAWMILHSLYQARIVSHANTGVLKRLEWLLELMGYMRNLAYQQPSVQSVALDEALDYLLLIFAAAVVAWADHEAPLLLGLSASWLPWHRENGPGGPAATLLGKSPMHRVTVQEVLTLLPSSMLLLLQKDPWREQTQKFIDWLFSIMEIPNEAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYGW", "length": 1758, "header": "tr|A0A9J7K357-1|A0A9J7K357_CRIGR Computationally mapped isoform of Focadhesin isoform X7 OS=Cricetulus griseus OX=10029 GN=Focad PE=4 SV=1 CANONICAL=A0A8C2MMF3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 624, "start_aa": "Thr", "end_pos": 624, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr624", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756324", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756324", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMF3" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMF3", "url": 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##RefSeq-Attributes-START## assembly gap :: added 152 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615087.1) and transcript sequence (JI871411.1) annotated using gene prediction method: Gnomon. 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Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247133", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247133" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MND1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MND1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prrt4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MND1", "locus": {} } ], "crossref": [ { "id": "100760257", "url": "https://www.ncbi.nlm.nih.gov/gene/100760257", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059081", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059081", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760257", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760257", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MND1", "url": "https://www.orthodb.org/?gene=A0A8C2MND1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35578", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35578", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35578:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35578:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25987", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25987", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247133", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247133", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MND1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MND1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MND1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MND1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGRGCLELGLFCWVLLAVPVGPQPASSAPGAPLTTLTPPPQSEASLLSLNLGLNFKFHLRGPAAVWGNPVTETHPLSPGLGQESEEEVEGDLRTDPLWELLVGSPGNYLSEWGSADGSSTPWASSLPPESTSPLSGPTKRPTVPSQPRVGTVTWATALTATAPPTSAPRLHQSELELKFGVALRAGAAPTLGHRSLPLLPSLRASLAEIAGRLGPFGFFGTTLSPLRNFSGQSSPGTTAHPSSASDVSDSPGLFGTIRSLPPPLLERKFSSSSLLDSVASPSSASIKTTPTEHEPTISTSGPYEPFPASFGSPSVQPECEPDSCSESELPDDLGQPPASPLPLFFLTLEADWAEAKARWGLAWEAHVYGAGALFGLVALLALLALALLPWRCPPGAPCLALLDLLLLSAGTTRAFPLFYDAYGHRDRLPTLAWLLLQDLPQPCLAAGLGLACLLLARPRTPRCPTGLAALLLLALGLAAAATLGSAVHRPLRPLRLASRGLHAFLAAFLSVLLLALSCWGGRRRRAGAPLGGSGFKGATPVPQVRSPFAPRESWRRAARTAPVAGTFGLLSGALQGYEVLHALGYGAQVGLEGPWPWWAFQLGLRLGEVGVALPLALLGLYPALCSPRVPRRCWAKLFRLSPGHAAPLLPGGWVRGTRDKEPLGSTIARGDAELLQLCALAGPGPDLLLQGGGCRGFEGAGAKPTQSTASSPSSDCTVDFRPPSPINLRRSIEEALCSEALLAPGLFQGAAFGEALPGVGLYRTISLGNKTGAGPRERSEKVPGSPALPELPSPGAWPAGSSASSGSLCGLSRDSSSMLLCSSPDRPPRCPLVCVLSPPRPSGSSPSLPASGSYQALSPPSLDSPEHSSELQAEEALLQEQFLDACRQIDELSVGSDTIDL", "length": 902, "header": "tr|A0A8C2MND1-1|A0A8C2MND1_CRIGR Isoform 1 of Proline-rich transmembrane protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrt4 PE=4 SV=1 CANONICAL=A0A8C2MND1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MND1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MND1/entry", "sequence": { "sequence": "MAGRGCLELGLFCWVLLAVPVGPQPASSAPGAPLTTLTPPPQSEASLLSLNLGLNFKFHLRGPAAVWGNPVTETHPLSPGLGQESEEEVEGDLRTDPLWELLVGSPGNYLSEWGSADGSSTPWASSLPPESTSPLSGPTKRPTVPSQPRVGTVTWATALTATAPPTSAPRLHQSELELKFGVALRAGAAPTLGHRSLPLLPSLRASLAEIAGRLGPFGFFGTTLSPLRNFSGQSSPGTTAHPSSASDVSDSPGLFGTIRSLPPPLLERKFSSSSLLDSVASPSSASIKTTPTEHEPTISTSGPYEPFPASFGSPSVQPECEPDSCSESELPDDLGQPPASPLPLFFLTLEADWAEAKARWGLAWEAHVYGAGALFGLVALLALLALALLPWRCPPGAPCLALLDLLLLSAGTTRAFPLFYDAYGHRDRLPTLAWLLLQDLPQPCLAAGLGLACLLLARPRTPRCPTGLAALLLLALGLAAAATLGSAVHRPLRPLRLASRGLHAFLAAFLSVLLLALSCWGGRRRRAGAPLGGSGFKGATPVPQVRSPFAPRESWRRAARTAPVAGTFGLLSGALQGYEVLHALGYGAQVGLEGPWPWWAFQLGLRLGEVGVALPLALLGLYPALCSPRVPRRCWAKLFRLSPGHAAPLLPGGWVRGTRDKEPLGSTIARGDAELLQLCALAGPGPDLLLQGGGCRGFEGAGAKPTQSTASSPSSDCTVDFRPPSPINLRRSIEEALCSEALLAPGLFQGAAFGEALPGVGLYRTISLGNKTGAGPRERSEKVPGSPALPELPSPGAWPAGSSASSGSLCGLSRDSSSMLLCSSPDRPPRCPLVCVLSPPRPSGSSPSLPASGSYQALSPPSLDSPEHSSELQAEEALLQEQFLDACRQIDELSVGSDTIDL", "length": 902, "header": "tr|A0A8C2MND1-1|A0A8C2MND1_CRIGR Isoform 1 of Proline-rich transmembrane protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrt4 PE=4 SV=1 CANONICAL=A0A8C2MND1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MNG5-1", "uniprot_ac": "A0A8C2MNG5", "uniprot_id": "A0A8C2MNG5_CRIGR", "mass": { "chemical_mass": 18375.0, "monoisotopic_mass": 18375.0 }, "refseq": { "ac": "XP_003505865", "name": "bcl-2-like protein 15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505865" }, "gene_names": [ { "name": "Bcl2l15", "type": "recommended", "evidence": [ { "id": "A0A8C2MNG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5" } ] }, { "name": "Bcl2l15", "type": "synonym", "evidence": [ { "id": "XP_003505865", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505865" } ] } ], "protein_names": [ { "name": "Bcl-2-like protein 15", "type": "recommended", "evidence": [ { "id": "A0A8C2MNG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5/entry#names_and_taxonomy" } ] }, { "name": "Bcl-2 family kin", "type": "synonym", "evidence": [ { "id": "A0A8C2MNG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5/entry#names_and_taxonomy" } ] }, { "name": "bcl-2-like protein 15", "type": "synonym", "evidence": [ { "id": "XP_003505865", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505865" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614192.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505865", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505865" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNG5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bcl2l15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5", "locus": {} } ], "crossref": [ { "id": "100760311", "url": "https://www.ncbi.nlm.nih.gov/gene/100760311", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760311", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760311", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MNG5", "url": "https://www.orthodb.org/?gene=A0A8C2MNG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36466", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36466", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36466:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36466:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003505865", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505865", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MNG5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MNG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKMKNPQTFEEQTECVMNALLMDFLTPTLQVASRNLQDSDEPYSGEACSFDVSIIAGRLRMLGDQFNGELEASASNVIAETIQGQAGTVLKDIVQSLSMAWCTQDPTLAFERAFLAVSVKLLECVVRKAPEMARQVARRMTGMINGNMAIREFIQDQGGWENLES", "length": 166, "header": "tr|A0A8C2MNG5-1|A0A8C2MNG5_CRIGR Isoform 1 of Bcl-2-like protein 15 OS=Cricetulus griseus OX=10029 GN=Bcl2l15 PE=4 SV=1 CANONICAL=A0A8C2MNG5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MNG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5/entry", "sequence": { "sequence": "MSKMKNPQTFEEQTECVMNALLMDFLTPTLQVASRNLQDSDEPYSGEACSFDVSIIAGRLRMLGDQFNGELEASASNVIAETIQGQAGTVLKDIVQSLSMAWCTQDPTLAFERAFLAVSVKLLECVVRKAPEMARQVARRMTGMINGNMAIREFIQDQGGWENLES", "length": 166, "header": "tr|A0A8C2MNG5-1|A0A8C2MNG5_CRIGR Isoform 1 of Bcl-2-like protein 15 OS=Cricetulus griseus OX=10029 GN=Bcl2l15 PE=4 SV=1 CANONICAL=A0A8C2MNG5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A8C2MNG5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNG5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MNH0-1", "uniprot_ac": "A0A8C2MNH0", "uniprot_id": "A0A8C2MNH0_CRIGR", "mass": { "chemical_mass": 25223.0, "monoisotopic_mass": 25223.0 }, "refseq": { "ac": "XP_003513695", "name": "clarin-3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513695" }, "gene_names": [ { "name": "Clrn3", "type": "recommended", "evidence": [ { "id": "A0A8C2MNH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNH0" } ] }, { "name": "Clrn3", "type": "synonym", "evidence": [ { "id": "XP_003513695", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513695" } ] } ], "protein_names": [ { "name": "Clarin-3", "type": "synonym", "evidence": [ { "id": "A0A8C2MNH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNH0/entry#names_and_taxonomy" } ] }, { "name": "clarin-3", "type": "synonym", "evidence": [ { "id": "XP_003513695", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513695" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616057.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513695", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513695" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNH0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Clrn3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNH0", "locus": {} } ], "crossref": [ { "id": "100755717", "url": "https://www.ncbi.nlm.nih.gov/gene/100755717", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755717", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755717", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IIIVFYQ", "url": "https://omabrowser.org/oma/group/IIIVFYQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MNH0", "url": "https://www.orthodb.org/?gene=A0A8C2MNH0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31548", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31548", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31548:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31548:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25807", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25807", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513695", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513695", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MNH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MNH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPTTQKTLMFLSGFLTSLGSVVVICSILGTQAWVTSTIFFTDVISNGTIVITYGLFRGTSARHLNEGLQDLDKNFEVLGTLGNSSQKTLHLVAVIFLVLSLGTSLLSSVFTFYNSISNPYQTFLGPTGVYTWNGLSASFVFLTMVLFVGNTESNHLSEVLSQKFYPEVTNERATHTYGYSFWLVLLVIFLNIVTVVIIIFYQKARYQQKQEQKKPVEYASKDGILF", "length": 226, "header": "tr|A0A8C2MNH0-1|A0A8C2MNH0_CRIGR Isoform 1 of Clarin-3 OS=Cricetulus griseus OX=10029 GN=Clrn3 PE=3 SV=1 CANONICAL=A0A8C2MNH0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MNH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNH0/entry", "sequence": { "sequence": "MPTTQKTLMFLSGFLTSLGSVVVICSILGTQAWVTSTIFFTDVISNGTIVITYGLFRGTSARHLNEGLQDLDKNFEVLGTLGNSSQKTLHLVAVIFLVLSLGTSLLSSVFTFYNSISNPYQTFLGPTGVYTWNGLSASFVFLTMVLFVGNTESNHLSEVLSQKFYPEVTNERATHTYGYSFWLVLLVIFLNIVTVVIIIFYQKARYQQKQEQKKPVEYASKDGILF", "length": 226, "header": "tr|A0A8C2MNH0-1|A0A8C2MNH0_CRIGR Isoform 1 of Clarin-3 OS=Cricetulus griseus OX=10029 GN=Clrn3 PE=3 SV=1 CANONICAL=A0A8C2MNH0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255667", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255667" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNQ0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNQ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Iffo2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNQ0", "locus": {} } ], "crossref": [ { "id": "100764698", "url": "https://www.ncbi.nlm.nih.gov/gene/100764698", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MNLQTMVDTLQEAAQEAEAIQEEMNEKIERLKAELVVFKGLMSDPMTDLDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKDRKVASDDDISEQDGEVNRFSDEEVGSMNITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFTNCNPTIDLQGEQEENLGNLIHETESFFKTRDKEYQETIGQIELELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPSSVASSDSGSTDEIQDDLEREADVEPMVS", "length": 287, "header": "tr|A0A9J7GPV2-1|A0A9J7GPV2_CRIGR Computationally mapped isoform of Intermediate filament family orphan 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Iffo2 PE=4 SV=1 CANONICAL=A0A8C2MNQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K137-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K137/entry", "sequence": { "sequence": "MSSPPLLASPPGLEGLWEEELAKRMNLQTMVDTLQEAAQEAEAIQEEMNEKIERLKAELVVFKGLMSDPMTDLDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKDRKVASDDDISEQDGEVNRFSDEEVGSMNITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFTNCNPTIDLQGEQEENLGNLIHETESFFKTRDKEYQETIGQIELELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPSSVASSDSGSTDEIQDDLEREADVEPMVS", "length": 311, "header": "tr|A0A9J7K137-1|A0A9J7K137_CRIGR Computationally mapped isoform of Intermediate filament family orphan 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Iffo2 PE=4 SV=1 CANONICAL=A0A8C2MNQ0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNQ0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNQ0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764698", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764698", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNQ0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNQ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": 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This record is derived from a genomic sequence (NW_003615397.1) and transcript sequence (IACG01030154.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027240196.1. 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"header": "tr|A0A9J7FQT0-1|A0A9J7FQT0_CRIGR Computationally mapped isoform of UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter isoform X5 OS=Cricetulus griseus OX=10029 GN=Slc35d2 PE=4 SV=1 CANONICAL=A0A8C2MNQ6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUN9/entry", "sequence": { "sequence": "MEEPDAAPLPSRLARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIVLGIGQMATTVMILYVSKINKIIHFPDFDKKIPGKLFPLPLLYVGNHISGLSSTSKLSSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDPKELGKYGVLFYNACFMIIPTVIISVTTGDFQRATEFSHWKNVLFIIQFLLSCLLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGMLVGGDYIFSLLNFIGLNICMAGGLRYSFLTLNSQLKPKQPVDEESMPLDLKS", "length": 279, "header": "tr|A0A9J7FUN9-1|A0A9J7FUN9_CRIGR Computationally mapped isoform of UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter isoform X6 OS=Cricetulus griseus OX=10029 GN=Slc35d2 PE=4 SV=1 CANONICAL=A0A8C2MNQ6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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] }, { "id": "IPR045126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768912", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768912", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MNU6", "url": "https://www.orthodb.org/?gene=A0A8C2MNU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13251:SF3", "url": 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"Protein" ] }, { "id": "A0A9J7H9X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9X4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAPEEPQPPVVYTMENKPIVTCAGDQNLFTSIYPTLSKQLPREPMEWRRSYGRAPKMIHLESNFVQFKEKLLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLVLRKPIDMEKRELIQKREATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHMVGLWSYAMEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLQEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKLVGKDLAEFYMRKRSPQKAEMYLQGALKNYLAEGWALPVTHTRKQLAECQKLLGQMENYLQTSSLLASDHHLTEDEQKYFCQEILSYASQQEDNPGHKVVLPMRSFARLKDLHFDPPNAVVHAGGVLTVEITVCSQMPVPVHVDQIAINVHFSIEKNNYRKTAEWLTKHKTSNGIVTFPAEASLFPASQNSLPALDLSEMLERSPSDNSLNTTGIICRNVHMLLRRQESGSSLETPSGLALEDGAHVLRCNSVTLQPGDNKIAFKTQAKEPGTYTLRQLRVTLGPVWFVLAHIHPIVQYDVYSQEPQLHVEPLADSLLAGIPQKVKFTVTTGHYTVKNGDSLQLSNVEAMLILCQAENRAVVYSNSREECSTASLRIQSSDKVTSISLPSAPAYHVIEFELEVLSLPSAPAVGEDSSILGTPEPYRKQKDMQQTDYCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSAGTRKYVQVCVQNLSELDFELSDSHLEDMGHATDLRLVPLNTQSQQLIHSKQSVFFVWELTWTQEPPPPLHCQFSVGFSPASEEQLTVSLKPYTYEFQVENFFTLYNVRAEILPASGAEYCRTGSLCSLEVSITRLADLLDVDKDEALVESEEYFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAQATHRVHMEVMPLFAGHLPLPDVRLFKYLPHHSAHASQLDADSWIENDSLSVDKHLDDQLDCSSVRSRGSTHSASSSEHKGLPMPRLQALPAGQVFNSSTGMQILVIPSQDDHVLEVSVT", "length": 1259, "header": "tr|A0A8C2MNU6-1|A0A8C2MNU6_CRIGR Isoform 1 of Trafficking protein particle complex subunit 10 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc10 PE=4 SV=1 CANONICAL=A0A8C2MNU6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MNU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6/entry", "sequence": { "sequence": "MDAPEEPQPPVVYTMENKPIVTCAGDQNLFTSIYPTLSKQLPREPMEWRRSYGRAPKMIHLESNFVQFKEKLLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLVLRKPIDMEKRELIQKREATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHMVGLWSYAMEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLQEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKLVGKDLAEFYMRKRSPQKAEMYLQGALKNYLAEGWALPVTHTRKQLAECQKLLGQMENYLQTSSLLASDHHLTEDEQKYFCQEILSYASQQEDNPGHKVVLPMRSFARLKDLHFDPPNAVVHAGGVLTVEITVCSQMPVPVHVDQIAINVHFSIEKNNYRKTAEWLTKHKTSNGIVTFPAEASLFPASQNSLPALDLSEMLERSPSDNSLNTTGIICRNVHMLLRRQESGSSLETPSGLALEDGAHVLRCNSVTLQPGDNKIAFKTQAKEPGTYTLRQLRVTLGPVWFVLAHIHPIVQYDVYSQEPQLHVEPLADSLLAGIPQKVKFTVTTGHYTVKNGDSLQLSNVEAMLILCQAENRAVVYSNSREECSTASLRIQSSDKVTSISLPSAPAYHVIEFELEVLSLPSAPAVGEDSSILGTPEPYRKQKDMQQTDYCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSAGTRKYVQVCVQNLSELDFELSDSHLEDMGHATDLRLVPLNTQSQQLIHSKQSVFFVWELTWTQEPPPPLHCQFSVGFSPASEEQLTVSLKPYTYEFQVENFFTLYNVRAEILPASGAEYCRTGSLCSLEVSITRLADLLDVDKDEALVESEEYFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAQATHRVHMEVMPLFAGHLPLPDVRLFKYLPHHSAHASQLDADSWIENDSLSVDKHLDDQLDCSSVRSRGSTHSASSSEHKGLPMPRLQALPAGQVFNSSTGMQILVIPSQDDHVLEVSVT", "length": 1259, "header": "tr|A0A8C2MNU6-1|A0A8C2MNU6_CRIGR Isoform 1 of Trafficking protein particle complex subunit 10 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc10 PE=4 SV=1 CANONICAL=A0A8C2MNU6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9X4/entry", "sequence": { "sequence": "MDAPEEPQPPVVYTMENKPIVTCAGDQNLFTSIYPTLSKQLPREPMEWRRSYGRAPKMIHLESNFVQFKEKLLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLVLRKPIDMEKRELIQKREATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHMVGLWSYAMEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLQEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKLVGKDLAEFYMRKRSPQKAEMYLQGALKNYLAEGWALPVTHTRKQLAECQKLLGQMENYLQTSSLLASDHHLTEDEQKYFCQEILSYASQQEDNPGHKVVLPMRSFARLKDLHFDPPNAVVHAGGVLTVEITVCSQMPVPVHVDQIAINVHFSIEKNNYRKTAEWLTKHKTSNGIVTFPAEASLFPASQNSLPALDLSEMLERSPSDNSLNTTGIICRNVHMLLRRQESGSSLETPSGLALEDGAHVLRCNSVTLQPGDNKIAFKTQAKEPGTYTLRQLRVTLGPVWFVLAHIHPIVQYDVYSQEPQLHVEPLAEECSTASLRIQSSDKVTSISLPSAPAYHVIEFELEVLSLPSAPAVGEDSSILGTPEPYRKQKDMQQTDYCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSAGTRKYVQVCVQNLSELDFELSDSHLEDMGHATDLRLVPLNTQSQQLIHSKQSVFFVWELTWTQEPPPPLHCQFSVGFSPASEEQLTVSLKPYTYEFQVENFFTLYNVRAEILPASGAEYCRTGSLCSLEVSITRLADLLDVDKDEALVESEEYFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAQATHRVHMEVMPLFAGHLPLPDVRLFKYLPHHSAHASQLDADSWIENDSLSVDKHLDDQLDCSSVRSRGSTHSASSSEHKGLPMPRLQALPAGQVFNSSTGMQILVIPSQDDHVLEVSVT", "length": 1206, "header": "tr|A0A9J7H9X4-1|A0A9J7H9X4_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 10 isoform X4 OS=Cricetulus griseus OX=10029 GN=Trappc10 PE=4 SV=1 CANONICAL=A0A8C2MNU6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNU6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNU6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768912", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768912", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNU6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" } ], "pmid": "" }, { "name": "TRAPPII protein complex", "id": "GO:1990071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990071", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNU6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intra-Golgi vesicle-mediated transport", "id": "GO:0006891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006891", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNU6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" } ], "pmid": "" }, { "name": "early endosome to Golgi transport", "id": "GO:0034498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034498", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNU6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1119, "end_pos": 1121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1186, "end_pos": 1188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1236, "end_pos": 1238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 690, "end_pos": 692, "annotation": "n_glycosylation_sequon" }, { "start_pos": 966, "end_pos": 968, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MNU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" }, { "id": "PF23604", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23604" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRAPPC10 Ig-like", "eco_id": "ECO_0000259", "start_pos": 791, "end_pos": 884, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MNU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" }, { "id": "PF12584", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12584" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRAPPC10/Trs130 C-terminal", "eco_id": "ECO_0000259", "start_pos": 1040, "end_pos": 1246, "start_aa": "Thr", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MNU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNU6" }, { "id": "PF23036", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23036" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRAPPC10/Trs130 N-terminal", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 328, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1119, "end_pos": 1121 }, { "start_pos": 1186, "end_pos": 1188 }, { "start_pos": 1236, "end_pos": 1238 }, { "start_pos": 136, "end_pos": 138 }, { "start_pos": 417, "end_pos": 419 }, { "start_pos": 690, "end_pos": 692 }, { "start_pos": 966, "end_pos": 968 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MP24-1", "uniprot_ac": "A0A8C2MP24", "uniprot_id": "A0A8C2MP24_CRIGR", "mass": { "chemical_mass": 6712.0, "monoisotopic_mass": 6712.0 }, "refseq": { "ac": "XP_035304228", "name": "protein Wfdc21", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304228" }, "gene_names": [ { "name": "LOC100771328", "type": "recommended", "evidence": [ { "id": "A0A8C2MP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" } ] }, { "name": "LOC100771328", "type": "synonym", "evidence": [ { "id": "XP_035304228", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304228" } ] } ], "protein_names": [ { "name": "Protein Wfdc21", "type": "synonym", "evidence": [ { "id": "A0A8C2MP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24/entry#names_and_taxonomy" } ] }, { "name": "protein Wfdc21", "type": "synonym", "evidence": [ { "id": "XP_035304228", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304228" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304228", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304228" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MP24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771328", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24", "locus": {} } ], "crossref": [ { "id": "100771328", "url": "https://www.ncbi.nlm.nih.gov/gene/100771328", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771328", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771328", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WDCGPGE", "url": "https://omabrowser.org/oma/group/WDCGPGE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MP24", "url": "https://www.orthodb.org/?gene=A0A8C2MP24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00095", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00095", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304228", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304228", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MP24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MP24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLGAFLLMVSLIAFSLEVQELQAAVRPLQLLGTCAELCRGDWDCGEGEQCVSTGCSNICTTS", "length": 63, "header": "tr|A0A8C2MP24-1|A0A8C2MP24_CRIGR Isoform 1 of Protein Wfdc21 OS=Cricetulus griseus OX=10029 GN=LOC100771328 PE=4 SV=1 CANONICAL=A0A8C2MP24-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MP24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24/entry", "sequence": { "sequence": "MKLGAFLLMVSLIAFSLEVQELQAAVRPLQLLGTCAELCRGDWDCGEGEQCVSTGCSNICTTS", "length": 63, "header": "tr|A0A8C2MP24-1|A0A8C2MP24_CRIGR Isoform 1 of Protein Wfdc21 OS=Cricetulus griseus OX=10029 GN=LOC100771328 PE=4 SV=1 CANONICAL=A0A8C2MP24-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MP24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MP24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771328", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771328", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LTY4-1", "protein_name": "WAP domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLAGFLLLVTLVILCLVIQELQAAVRPFRVFGTCVELCNGDWDCGPEERCVSNGCGHVCV", "length": 61 }, "evidence": [ { "id": "A0A8C2MP24", "url": "https://omabrowser.org/oma/group/A0A8C2MP24/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F7F765-1", "protein_name": "WAP four-disulfide core domain 21", "gene_name": "Wfdc21", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "CWLKSFSSRMKLGAFLLLVSLVTLSLKVQELQAAVRPLQLLGTCAELCSGDWDCGPGEQCVSTGCSNVCATS", "length": 72 }, "evidence": [ { "id": "A0A8C2MP24", "url": "https://omabrowser.org/oma/group/A0A8C2MP24/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BTE6-1", "protein_name": "Protein Wfdc21", "gene_name": "Wfdc21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLGAFLLLVSLITLSLEVQELQAAVRPLQLLGTCAELCRGDWDCGPEEQCVSIGCSHICTTN", "length": 63 }, "evidence": [ { "id": "A0A8C2MP24", "url": "https://omabrowser.org/oma/group/A0A8C2MP24/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MP24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "enzyme activator activity", "id": "GO:0008047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008047", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MP24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" } ], "pmid": "" }, { "name": "peptidase inhibitor activity", "id": "GO:0030414", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030414", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MP24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MP24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP24" }, { "id": "PF00095", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00095" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WAP", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 62, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MPD8-1", "uniprot_ac": "A0A8C2MPD8", "uniprot_id": "A0A8C2MPD8_CRIGR", "mass": { "chemical_mass": 76505.0, "monoisotopic_mass": 76505.0 }, "refseq": { "ac": "XP_035303204", "name": "nuclear fragile X mental retardation-interacting protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303204" }, "gene_names": [ { "name": "LOC100757378", "type": "recommended", "evidence": [ { "id": "A0A8C2MPD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ] }, { "name": "LOC100757378", "type": "synonym", "evidence": [ { "id": "XP_035303204", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303204" } ] } ], "protein_names": [ { "name": "Nuclear fragile X mental retardation-interacting protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MPD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8/entry#names_and_taxonomy" } ] }, { "name": "nuclear fragile X mental retardation-interacting protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035303204", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303204" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303204", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303204" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757378", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8", "locus": {} } ], "crossref": [ { "id": "100757378", "url": "https://www.ncbi.nlm.nih.gov/gene/100757378", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757378", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757378", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MPD8", "url": "https://www.orthodb.org/?gene=A0A8C2MPD8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28333", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28333", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28333:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28333:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15293", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15293", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303204", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303204", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEKPGQPQPQHHHSHHHPHHHPQQQQQQQQQQQQQQQSSHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKAQPKPLKHEQKHTLQQHQETPKKKTGYGEINGNAGEISLKSLSSDEATNPISRVLNGNQQVVDPSLKQTVKTSTFGKAGIKTKNFIQKNSMDKKNGKSYENKSGENQAIDKNDVAIPNGVITNNSAYITNGYMGKGADNDGSGSESGYTTPKKRKARRNSAKGCENLNLVQDKIMQETGVPALKQGLESLKPDYSEQKGTRADGSKPIWKYETGPGGTSRGKPAVGDTLRKSSDIKPGLSSKKFDDRPKGKHASAAASKEDSWTLFKPPPVFPVDNSSAKIVPKISYASKVKENLNKTVQNSSVSPSSSSSSSLSTGETQTQSSSRLSQVPMSALKSVTSANFSNGPVLAGTDGNVYPSGGQPLLTTAASTLTPISTGTDSVLQDISLTSAAVEQIKSSLFIYPSNMQTVLLSTAQVDLPSQTDQQNLGDIFQNQWGLSFINEPSAGPETVTGKSSDLKVMEVTFQGEYPATLVSQGAEIIPSGTEHPVFPKAYELEKRTSPQVLGNILKPGTTESGALSLEPSHIGDLQKADTSSQGALVFLSKDYEIENQNPLASPTNTLLGSAKEQRYQRGLERNDSWGSFDLRAAIVYHTKEMESIWNLQKQDPKRIITYNEAMDSPDQ", "length": 700, "header": "tr|A0A8C2MPD8-1|A0A8C2MPD8_CRIGR Isoform 1 of Nuclear fragile X mental retardation-interacting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100757378 PE=4 SV=1 CANONICAL=A0A8C2MPD8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MPD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8/entry", "sequence": { "sequence": "MEEKPGQPQPQHHHSHHHPHHHPQQQQQQQQQQQQQQQSSHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKAQPKPLKHEQKHTLQQHQETPKKKTGYGEINGNAGEISLKSLSSDEATNPISRVLNGNQQVVDPSLKQTVKTSTFGKAGIKTKNFIQKNSMDKKNGKSYENKSGENQAIDKNDVAIPNGVITNNSAYITNGYMGKGADNDGSGSESGYTTPKKRKARRNSAKGCENLNLVQDKIMQETGVPALKQGLESLKPDYSEQKGTRADGSKPIWKYETGPGGTSRGKPAVGDTLRKSSDIKPGLSSKKFDDRPKGKHASAAASKEDSWTLFKPPPVFPVDNSSAKIVPKISYASKVKENLNKTVQNSSVSPSSSSSSSLSTGETQTQSSSRLSQVPMSALKSVTSANFSNGPVLAGTDGNVYPSGGQPLLTTAASTLTPISTGTDSVLQDISLTSAAVEQIKSSLFIYPSNMQTVLLSTAQVDLPSQTDQQNLGDIFQNQWGLSFINEPSAGPETVTGKSSDLKVMEVTFQGEYPATLVSQGAEIIPSGTEHPVFPKAYELEKRTSPQVLGNILKPGTTESGALSLEPSHIGDLQKADTSSQGALVFLSKDYEIENQNPLASPTNTLLGSAKEQRYQRGLERNDSWGSFDLRAAIVYHTKEMESIWNLQKQDPKRIITYNEAMDSPDQ", "length": 700, "header": "tr|A0A8C2MPD8-1|A0A8C2MPD8_CRIGR Isoform 1 of Nuclear fragile X mental retardation-interacting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100757378 PE=4 SV=1 CANONICAL=A0A8C2MPD8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757378", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757378", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "pmid": "" }, { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPD8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 200, "end_pos": 202 }, { "start_pos": 353, "end_pos": 355 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 655, "end_pos": 657 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"synonym", "evidence": [ { "id": "XP_003495921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495921" } ] } ], "protein_names": [ { "name": "Required for meiotic nuclear division protein 1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MPE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4/entry#names_and_taxonomy" } ] }, { "name": "required for meiotic nuclear division protein 1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495921" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495921", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495921" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPE4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rmnd1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4", "locus": {} } ], "crossref": [ { "id": "100767911", "url": "https://www.ncbi.nlm.nih.gov/gene/100767911", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051624", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051624", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767911", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767911", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KLGMWEA", "url": "https://omabrowser.org/oma/group/KLGMWEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MPE4", "url": "https://www.orthodb.org/?gene=A0A8C2MPE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FCJ3", "url": "https://www.orthodb.org/?gene=A0A9J7FCJ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JCZ5", "url": "https://www.orthodb.org/?gene=A0A9J7JCZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16255", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16255", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16255:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16255:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495921", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495921", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MPE4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPARLLQTLASLSSASLKAYQCKRLARLPLKPLTESESTACRKSLKIQQCLDSFFPQITADSLNNPKILEMSRIISNESRPFSLNAVHCWDGKACLPTMHPFGTPRKVAHKPNLLCAKWFIKTVKRHHSVSTETLVPKQDLPQIKRPLKASRTRQPSRTNLPELSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANVLVMGVENTAKEGDPGMIFLFREGATVFWNVRDKTVKHVMQVLERHETQPYEVALVYWENEELNYMKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLLTPDFYWDRANLEELYDKTCQFLSIARRVKVMNEKLQHCMELTDLMRNHLNENRALRLEWMIVILITIEVMFELGRVFF", "length": 449, "header": "tr|A0A8C2MPE4-1|A0A8C2MPE4_CRIGR Isoform 1 of Required for meiotic nuclear division protein 1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Rmnd1 PE=3 SV=1 CANONICAL=A0A8C2MPE4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MPE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4/entry", "sequence": { "sequence": "MPARLLQTLASLSSASLKAYQCKRLARLPLKPLTESESTACRKSLKIQQCLDSFFPQITADSLNNPKILEMSRIISNESRPFSLNAVHCWDGKACLPTMHPFGTPRKVAHKPNLLCAKWFIKTVKRHHSVSTETLVPKQDLPQIKRPLKASRTRQPSRTNLPELSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANVLVMGVENTAKEGDPGMIFLFREGATVFWNVRDKTVKHVMQVLERHETQPYEVALVYWENEELNYMKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLLTPDFYWDRANLEELYDKTCQFLSIARRVKVMNEKLQHCMELTDLMRNHLNENRALRLEWMIVILITIEVMFELGRVFF", "length": 449, "header": "tr|A0A8C2MPE4-1|A0A8C2MPE4_CRIGR Isoform 1 of Required for meiotic nuclear division protein 1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Rmnd1 PE=3 SV=1 CANONICAL=A0A8C2MPE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCJ3/entry", "sequence": { "sequence": "MQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANVLVMGVENTAKEGDPGMIFLFREGATVFWNVRDKTVKHVMQVLERHETQPYEVALVYWENEELNYMKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLLTPDFYWDRANLEELYDKTCQFLSIARRVKVMNEKLQHCMELTDLMRNHLNENRALRLEWMIVILITIEVMFELGRVFF", "length": 279, "header": "tr|A0A9J7FCJ3-1|A0A9J7FCJ3_CRIGR Computationally mapped isoform of Required for meiotic nuclear division protein 1 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Rmnd1 PE=3 SV=1 CANONICAL=A0A8C2MPE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHL0/entry", "sequence": { "sequence": "MPARLLQTLASLSSASLKAYQCKRLARLPLKPLTESESTACRKSLKIQQCLDSFFPQITADSLNNPKILEMSRIISNESRPFSLNAVHCWDGKACLPTMHPFGTPRKVAHKPNLLCAKWFIKTVKRHHSVSTETLVPKQDLPQIKRPLKASRTRQPSRTNLPELSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANVLVMGVENTAKEGDPGMIFLFREGATVFWNVRDKTVKHVMQVLERHETQPYEVALVYWENEELNYMKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEAPYKFEFRFLADSRLLLGQSKPGGAL", "length": 360, "header": "tr|A0A9J7FHL0-1|A0A9J7FHL0_CRIGR Computationally mapped isoform of Required for meiotic nuclear division protein 1 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Rmnd1 PE=3 SV=1 CANONICAL=A0A8C2MPE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCZ5/entry", "sequence": { "sequence": "MPARLLQTLASLSSASLKAYQCKRLARLPLKPLTESESTACRKSLKIQQCLDSFFPQITADSLNNPKILEMSRIISNESRPFSLNAVHCWDGKACLPTMHPFGTPRKVAHKPNLLCAKWFIKTVKRHHSVSTETLVPKQDLPQIKRPLKASRTRQPSRTNLPELSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANVLVMGVENTAKEGDPGMIFLFRLTLLLFESGKELLCSGT", "length": 247, "header": "tr|A0A9J7JCZ5-1|A0A9J7JCZ5_CRIGR Computationally mapped isoform of Required for meiotic nuclear division protein 1 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Rmnd1 PE=4 SV=1 CANONICAL=A0A8C2MPE4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPE4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPE4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767911", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767911", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AVV0-1", "protein_name": "Required for meiotic nuclear division 1 homolog", "gene_name": "RMND1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGGLNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSSSVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKMGELFALRHRINLSSDFLITPDFYWDRENLEELYDKTCRFLSITRRVKVMNEKLQHCMELTDLMRNHLTEKRTLRLEWMIVILITIEVGNFRENNLAEKSMTLS", "length": 447 }, "evidence": [ { "id": "A0A8C2MPE4", "url": "https://omabrowser.org/oma/group/A0A8C2MPE4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8M9P054-1", "protein_name": "Required for meiotic nuclear division protein 1 homolog isoform X1", "gene_name": "rmnd1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFVKMLWRLQQPLKSTQACGFTLRQINGLNSVTSNRLNCSTLALQTPFKDQRNCPAILHHCILQKGGPRFQVLTPLNFISKTWSFQVRLQSTTAATNIVLKQGGMSGKRTFKGPRTKQPSRASQPSLEEDLMQCIAYATADQYHLPTLCHDLIAHGFSEIKEFPRDASNVLVMGTDNSAKPYDSGTIFFFREGSVVFWNVEDKTMKTTMKILEQHEIQPYEVALVYWENEEINYTVGEGHSKLRHGVFLFNEELDYEQVILEKFAFSNALSLSVKLAIWEVTLDSFVESIQSIPEMLKSGQRVKLSRADVMQKIGELFSLRHCINLSSDLLITPDFYWDREDLELLYDKTCQFLNINRRVKVVNEKLQHCTELTDLMRNHLSEKHSLRLEWMIVVLITIEVMFELARVIF", "length": 410 }, "evidence": [ { "id": "A0A8C2MPE4", "url": "https://omabrowser.org/oma/group/A0A8C2MPE4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0XIY0-1", "protein_name": "Required for meiotic nuclear division 1 homolog", "gene_name": "RMND1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLKLLRLQTTSFHSLTTIGRCQRFNKTGHRLLKLDNDVDRTDHRTAKKIGNLPAPKTASPCLTSPYVQVKNWQMMQGNVSALGKSVYYQGGEVFFPPWKRFGLAAMENYKLSVEYIKNLGNISSRFYSIVSTSKIIPKSSTQPVKRPPKAPRTKQPSRANQPLLSDMENLMQCTAFATADEYHLGNLCHDLTSHGYVEITSLPRDAANVLVMGTEKSAKEDDPGMVFFFREGAVVFWNVDEKSMKNIMRVLEQHEIQPYEVALVHWENEEINYRIGEGQSKLHKGEILLNSELDTDEVVLQKFAFSNALCLSVKLAIWESLLDNFVESIQSIPEILKSRRKVKLSHADVMQKIGELFALRHRINLSSDLLITPDFYWDREKLEELYDKTCQFLNINRRVKVMNEKLQHCMELTDLMRNHLNEKHALRLEWMIVILITIEVMFELARVVL", "length": 450 }, "evidence": [ { "id": "A0A8C2MPE4", "url": "https://omabrowser.org/oma/group/A0A8C2MPE4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9PU34-1", "protein_name": "Required for meiotic nuclear division 1 homolog", "gene_name": "Rmnd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPARQLQTLAGLHSISSKAHQCQRLTRLTLRPLTKFESTACHNSLTIQQHLDSFLPSITADSLNKPKIPETSRVISNASRLFPLNAVHWLDRKEHRPSMHAFGTHRSMTHKPNFLCSKWFIKAVKRHHSSVSNEALVPKQDLPQIKRPLKASRTRQPSRTNLPDLSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANILVMGVESSAKEGDAGTIFLFREGAAVFWNVKDKTMKHVMQVLERHETQPYEVALVHWENEELNYTKTEGQSKLHRGEIKLNSELDLDDSILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEVMFELGRVFF", "length": 450 }, "evidence": [ { "id": "A0A8C2MPE4", "url": "https://omabrowser.org/oma/group/A0A8C2MPE4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MS81-1", "protein_name": "Required for meiotic nuclear division 1 homolog", "gene_name": "RMND1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVMSARLLRALAGSRHILSKACQCQRLIHQMLKPLKEFETAARTALTRNQNLDLFFPDAATGGLNKSQILWMNQKISNTNVLPPFNTACCQDGKAHLPTRNSVSTHRKVTHKPNLLGSKWFIKILKRHSSSVSTETVSKQDFPQIKRPLKASRTRQPSRTNLPVLPVNEDLMQCTAFATADEYHLGSLSQDLTSHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDQTMKHVMQVLEKHEIQPYEIALVHWENEELNYTKTEGQSKLHRGEIRLNSELDLDDVILEKFAFSNALCLSVKLAIWEASLDKFVESIQSIPEALKAGKKVKLSHEEVMQKMGELFALRHRINLSSDFLITPDFYWDRENLEELYDKTCRFLSITRRVKVMNEKLQHCMELTDLMRNHLTEKRALRLEWMIVILITIEVLFELGRVFFLIK", "length": 453 }, "evidence": [ { "id": "A0A8C2MPE4", "url": "https://omabrowser.org/oma/group/A0A8C2MPE4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8CI78-1", "protein_name": "Required for meiotic nuclear division protein 1 homolog", "gene_name": "Rmnd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPSRLLHTLASLHSISAKAHQCQRLTWLTLRPLRKSESTTCHNGLTIQQHLHSFFPSITADSLNKPEILEMSRITSDTSRLFPLNAVHWLDGKEHWPSMHPFGTHRSMTHKPNLLCSKWFIKAVKRHHSSVSNEALVPKQDLPQIKRPLKASRTRQPSRTNLPDLSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANILVMGVESSAKEGDPGTIFLFREGAAVFWNVKEKTMKHVMQVLERHETQPYEVALVHWENEELNYIKTEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEVMFELGRVFF", "length": 450 }, "evidence": [ { "id": "A0A8C2MPE4", "url": "https://omabrowser.org/oma/group/A0A8C2MPE4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NWS8-1", "protein_name": "Required for meiotic nuclear division protein 1 homolog", "gene_name": "RMND1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPATLLRAVARSHHILSKAHQCRRIGHLMLKPLKEFENTTCSTLTIRQSLDLFLPDKTASGLNKSQILEMNQKKSDTSMLSPLNAARCQDEKAHLPTMKSFGTHRRVTHKPNLLGSKWFIKILKRHFSSVSTETFVPKQDFPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEVMFELGRVFF", "length": 449 }, "evidence": [ { "id": "A0A8C2MPE4", "url": "https://omabrowser.org/oma/group/A0A8C2MPE4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPE4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of mitochondrial translation", "id": "GO:0070131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070131", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPE4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MPE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPE4" }, { "id": "PF02582", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02582" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF155", "eco_id": "ECO_0000259", "start_pos": 226, "end_pos": 403, "start_aa": "Ile", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 364, "end_pos": 366 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MPF4-1", "uniprot_ac": "A0A8C2MPF4", "uniprot_id": "A0A8C2MPF4_CRIGR", "mass": { "chemical_mass": 55670.0, "monoisotopic_mass": 55670.0 }, "refseq": { "ac": "XP_027244391", "name": "tripartite motif-containing protein 10 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244391" }, "gene_names": [ { "name": "Trim10", "type": "recommended", "evidence": [ { "id": "A0A8C2MPF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4" } ] }, { "name": "Trim10", "type": "synonym", "evidence": [ { "id": "XP_027244391", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244391" } ] } ], "protein_names": [ { "name": "Tripartite motif-containing protein 10 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MPF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4/entry#names_and_taxonomy" } ] }, { "name": "tripartite motif-containing protein 10 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027244391", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244391" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244391", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244391" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPF4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Trim10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4", "locus": {} } ], "crossref": [ { "id": "cd15827", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15827", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754326", "url": "https://www.ncbi.nlm.nih.gov/gene/100754326", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754326", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754326", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MPF4", "url": "https://www.orthodb.org/?gene=A0A8C2MPF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244391", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244391", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MPF4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAPSVTSLADEVNCPICQGTLREPVTIDCGHNFCRGCLTRYCEIPGPELESLSCPLCKEPFRPGSFRPNWQLANVVENIERLQLASTQGPEVEDACPEHREKVYFFCEEDEAQLCVVCREAGQHRTHTVRFLEDAAGPYREQIQNCLMCLRKERTEIQEIQSRENKRIQVLLTQVATKRQQVISQFAHLSQFLEEQQSVLLAQLERLDGDILKQQEEFDSLATGEICRFSTLIEELEEKNKRPARGLLTDIRSTLIRCETRKCRKPEAISPELGQRIRDFTQQAIPLQQEMKTFLEKLCFELDYEPAQIALDPQTSHPKLLLSEDHRRARFSYKWQNSPDTPQRFDRATCVLAQRGFTGGRHTWVVNVDLAHGGSCTVGVAREDVQRKGELRLRPEEGTWAVRLAWGFVSALGSFPTRLALEQQPRKVQVSLDYEVGWVTFVNAVTQEHIYTFTASFTREIFPLFGLWGRGSSFSLSCQEGAVSLL", "length": 488, "header": "tr|A0A8C2MPF4-1|A0A8C2MPF4_CRIGR Isoform 1 of Tripartite motif-containing protein 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trim10 PE=3 SV=1 CANONICAL=A0A8C2MPF4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MPF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4/entry", "sequence": { "sequence": "MASAPSVTSLADEVNCPICQGTLREPVTIDCGHNFCRGCLTRYCEIPGPELESLSCPLCKEPFRPGSFRPNWQLANVVENIERLQLASTQGPEVEDACPEHREKVYFFCEEDEAQLCVVCREAGQHRTHTVRFLEDAAGPYREQIQNCLMCLRKERTEIQEIQSRENKRIQVLLTQVATKRQQVISQFAHLSQFLEEQQSVLLAQLERLDGDILKQQEEFDSLATGEICRFSTLIEELEEKNKRPARGLLTDIRSTLIRCETRKCRKPEAISPELGQRIRDFTQQAIPLQQEMKTFLEKLCFELDYEPAQIALDPQTSHPKLLLSEDHRRARFSYKWQNSPDTPQRFDRATCVLAQRGFTGGRHTWVVNVDLAHGGSCTVGVAREDVQRKGELRLRPEEGTWAVRLAWGFVSALGSFPTRLALEQQPRKVQVSLDYEVGWVTFVNAVTQEHIYTFTASFTREIFPLFGLWGRGSSFSLSCQEGAVSLL", "length": 488, "header": "tr|A0A8C2MPF4-1|A0A8C2MPF4_CRIGR Isoform 1 of Tripartite motif-containing protein 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trim10 PE=3 SV=1 CANONICAL=A0A8C2MPF4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPF4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754326", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754326", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPF4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPF4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": 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automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270781" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPI3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam219b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPI3", "locus": {} } ], "crossref": [ { "id": "100766049", "url": "https://www.ncbi.nlm.nih.gov/gene/100766049", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029339", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766049", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766049", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MPI3", "url": "https://www.orthodb.org/?gene=A0A8C2MPI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31281", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31281", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31281:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31281:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15260", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15260", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027270781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270781", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MPI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QM69", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QM69-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAELRGHAVRMSTQGPRPGAAPDGVAGAAGLPSGRGGGAALRLGERPPAAMEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGALPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELESRYSSGYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPIASSTCSCCWCCLGESSCTLQ", "length": 197, "header": "tr|A0A8C2MPI3-1|A0A8C2MPI3_CRIGR Isoform 1 of Protein FAM219B isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam219b PE=3 SV=1 CANONICAL=A0A8C2MPI3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPI3/entry", "sequence": { "sequence": "MAAAELRGHAVRMSTQGPRPGAAPDGVAGAAGLPSGRGGGAALRLGERPPAAMEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGALPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELESRYSSGYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPIASSTCSCCWCCLGESSCTLQ", "length": 197, "header": "tr|A0A8C2MPI3-1|A0A8C2MPI3_CRIGR Isoform 1 of Protein FAM219B isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam219b PE=3 SV=1 CANONICAL=A0A8C2MPI3-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QM69-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM69/entry", "sequence": { "sequence": "MAAAELRGHAVRMSTQGPRPGAAPDGVAGAAGLPSGRGGGAALRLGERPPAAMEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGALPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSR", "length": 128, "header": "tr|A0A8C2QM69-1|A0A8C2QM69_CRIGR Computationally mapped isoform of Protein FAM219B isoform X7 OS=Cricetulus griseus OX=10029 GN=Fam219b PE=3 SV=1 CANONICAL=A0A8C2MPI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWR4/entry", "sequence": { "sequence": "MAAAELRGHAVRMSTQGPRPGAAPDGVAGAAGLPSGRGGGAALRLGERPPAAMEKRGPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGALPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDR", "length": 127, "header": "tr|A0A9J7FWR4-1|A0A9J7FWR4_CRIGR Computationally mapped isoform of Protein FAM219B isoform X8 OS=Cricetulus griseus OX=10029 GN=Fam219b PE=3 SV=1 CANONICAL=A0A8C2MPI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXC3-1", "url": 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPI3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766049", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766049", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MPN1-1", "uniprot_ac": "A0A8C2MPN1", "uniprot_id": "A0A8C2MPN1_CRIGR", "mass": { "chemical_mass": 49070.0, "monoisotopic_mass": 49070.0 }, "refseq": { "ac": "XP_027249605", "name": "protein mab-21-like 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249605" }, "gene_names": [ { "name": "Mab21l3", "type": "recommended", "evidence": [ { "id": "A0A8C2MPN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPN1" } ] }, { "name": "Mab21l3", "type": "synonym", "evidence": [ { "id": "XP_027249605", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249605" } ] } ], "protein_names": [ { "name": "Protein mab-21-like 3", "type": "synonym", "evidence": [ { "id": "A0A8C2MPN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPN1/entry#names_and_taxonomy" } ] }, { "name": "protein mab-21-like 3", "type": "synonym", "evidence": [ { "id": "XP_027249605", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249605" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249605", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249605" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPN1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPN1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mab21l3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPN1", "locus": {} } ], "crossref": [ { "id": "100774678", "url": "https://www.ncbi.nlm.nih.gov/gene/100774678", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774678", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774678", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MPN1", "url": "https://www.orthodb.org/?gene=A0A8C2MPN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10656", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10656", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10656:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10656:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03281", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03281", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249605", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249605", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MPN1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADEFSQVVKENCSEQARRSQVSGSCSQFQRSFIQRVTLLGKLPTSFVLHREKKQKVAAILGIDQEAMKSLPEGDLQDCLLSKVDLRRQQISQSVEEVQKVIHHLTAEISLQDSRFQAVPASDTYNGSIKVLAPSLFHVTIPLKGLAGYKGARAQRWRYYSLQGTKLTCPLRDPEGLQQWLETEQFMKTLWQWHQADVNIEGDIVPAKVLQVFRTLVENAVRACHLSGKVSVLANRAAVWVAIETSTGQVELELAPTVEIPTAWSEKAQWPRCLTRWPSPDRVECIKSFGFSLVARSSYHWQLSFPQAEQVLFEQLVEDGGCHRRCFQVLRQLKEDVWCPGKRPVITTHHLQTVLFWTCEKYPHLKDWQVFHQALLRLVRKLHRCVSQHFLKHYFVPKSNLLQSANPSELDAVAQKVAFFLKNPQVTLP", "length": 429, "header": "tr|A0A8C2MPN1-1|A0A8C2MPN1_CRIGR Isoform 1 of Protein mab-21-like 3 OS=Cricetulus griseus OX=10029 GN=Mab21l3 PE=3 SV=1 CANONICAL=A0A8C2MPN1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MPN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPN1/entry", "sequence": { "sequence": "MADEFSQVVKENCSEQARRSQVSGSCSQFQRSFIQRVTLLGKLPTSFVLHREKKQKVAAILGIDQEAMKSLPEGDLQDCLLSKVDLRRQQISQSVEEVQKVIHHLTAEISLQDSRFQAVPASDTYNGSIKVLAPSLFHVTIPLKGLAGYKGARAQRWRYYSLQGTKLTCPLRDPEGLQQWLETEQFMKTLWQWHQADVNIEGDIVPAKVLQVFRTLVENAVRACHLSGKVSVLANRAAVWVAIETSTGQVELELAPTVEIPTAWSEKAQWPRCLTRWPSPDRVECIKSFGFSLVARSSYHWQLSFPQAEQVLFEQLVEDGGCHRRCFQVLRQLKEDVWCPGKRPVITTHHLQTVLFWTCEKYPHLKDWQVFHQALLRLVRKLHRCVSQHFLKHYFVPKSNLLQSANPSELDAVAQKVAFFLKNPQVTLP", "length": 429, "header": "tr|A0A8C2MPN1-1|A0A8C2MPN1_CRIGR Isoform 1 of Protein mab-21-like 3 OS=Cricetulus griseus OX=10029 GN=Mab21l3 PE=3 SV=1 CANONICAL=A0A8C2MPN1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 454 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613862.1) and transcript sequence (IACG01063198.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003501874.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003501874", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501874" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smap2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7", "locus": {} } ], "crossref": [ { "id": "cd08859", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08859", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756534", "url": "https://www.ncbi.nlm.nih.gov/gene/100756534", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038508", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038508", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051718", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051718", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756534", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756534", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MPT7", "url": "https://www.orthodb.org/?gene=A0A8C2MPT7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45705", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45705", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45705:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45705:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003501874", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501874", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MPT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDINALRKEKDDKWKRGSEPVPEKKMEPVVFEKVKMPQKKEDAQLPRKSSPKSAAPVMDLLGLDAPVACSIANSKTSNTLEKDLDLLASVPSPSSVSRKAVGSMPTAGSAGSVPENLNLFPEPGSKSEETGKKQLSKDSILSLYGSQTPQMPAQAMFMAPAQMAYPTAYPSFPGVTPPNSIMGSMMPPPVGMVAQPGASGMVAPMAMPAGYMGGMQASMMGVPNGMMTQQASYMASMAAMPQTMYGVQPAQQLQWNLTQMTQQMAGMNFYGANGMMNYGQSMGSGNGQAANQTLSPQMWK", "length": 427, "header": "tr|A0A8C2MPT7-1|A0A8C2MPT7_CRIGR Isoform 1 of Stromal membrane-associated protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Smap2 PE=4 SV=1 CANONICAL=A0A8C2MPT7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MPT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7/entry", "sequence": { "sequence": "MTGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDINALRKEKDDKWKRGSEPVPEKKMEPVVFEKVKMPQKKEDAQLPRKSSPKSAAPVMDLLGLDAPVACSIANSKTSNTLEKDLDLLASVPSPSSVSRKAVGSMPTAGSAGSVPENLNLFPEPGSKSEETGKKQLSKDSILSLYGSQTPQMPAQAMFMAPAQMAYPTAYPSFPGVTPPNSIMGSMMPPPVGMVAQPGASGMVAPMAMPAGYMGGMQASMMGVPNGMMTQQASYMASMAAMPQTMYGVQPAQQLQWNLTQMTQQMAGMNFYGANGMMNYGQSMGSGNGQAANQTLSPQMWK", "length": 427, "header": "tr|A0A8C2MPT7-1|A0A8C2MPT7_CRIGR Isoform 1 of Stromal membrane-associated protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Smap2 PE=4 SV=1 CANONICAL=A0A8C2MPT7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756534", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756534", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MPT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPT7" }, { "id": "PS50115", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arf-GAP", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 137, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 383, "end_pos": 385 }, { "start_pos": 418, "end_pos": 420 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MPU2-1", "uniprot_ac": "A0A8C2MPU2", "uniprot_id": "A0A8C2MPU2_CRIGR", "mass": { "chemical_mass": 71595.0, "monoisotopic_mass": 71595.0 }, "refseq": { "ac": "XP_027275329", "name": "zinc finger protein 878 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275329" }, "gene_names": [ { "name": "LOC100755677", "type": "recommended", "evidence": [ { "id": "A0A8C2MPU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2" } ] }, { "name": "LOC100755677", "type": "synonym", "evidence": [ { "id": "XP_027275329", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275329" } ] } ], "protein_names": [ { "name": "Zinc finger protein 878 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MPU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 878 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027275329", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275329" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275329", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275329" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755677", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755677", "url": "https://www.ncbi.nlm.nih.gov/gene/100755677", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755677", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755677", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MPU2", "url": "https://www.orthodb.org/?gene=A0A8C2MPU2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027275329", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275329", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MPU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MPU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESVTFEDVAVNFSLEEWAMLNPSQKNLYKDVMQETLRNLASIGSSLEHHIIENIYRNSWRKLSGQVVEGLYDYKDDHQCTEIFDFTTHSIVNQNPFPGVHICENSGCARVVIGHLSLSVLLKPDTEHESYEDREYGKESYNSMEFGATSSSLPSFEHYGSTYTLERLYKSENCNEDYRFGQNLEKALAEEKPFQCKQCGKGFSSSRYFRRHERRHRAKKSYICKQCGKAFAFPTYLQTHERIHTGEKPYVCVQCGKTFAHSRSLKTHKRTHSVRDLFVCNYCGKTLRHYSSLQIHTRIHTGEKPYVCKPCGKAFITYRSFRIHERIHTGETPYECKQCGNTFMRWIQLRKHEIIHSGVKPYACKLCGKSFTCSGSLRTHERIHTGERPYVCDQCGYSFTRLNSLLRHKITHTGEKPYVCNHCGKTFPRSASLQRHVKIHTEEKPFVCKQCGVAFATSTDLLEHEQTHIDEKPYICEQCGNAFVLWSQFQKHKALHSVPVSYICKQCGKSFTSSRSLKTHERIHTGEKPYECKQCGKTFLWSYSLQRHEKTHSDGKPHVCKQCGQAFPYYSHLQVHEKIHIDDEPYNCKYCGKPFFTLNHLHRHEVLHTTLDSSVF", "length": 616, "header": "tr|A0A8C2MPU2-1|A0A8C2MPU2_CRIGR Isoform 1 of Zinc finger protein 878 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100755677 PE=3 SV=1 CANONICAL=A0A8C2MPU2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MPU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2/entry", "sequence": { "sequence": "MESVTFEDVAVNFSLEEWAMLNPSQKNLYKDVMQETLRNLASIGSSLEHHIIENIYRNSWRKLSGQVVEGLYDYKDDHQCTEIFDFTTHSIVNQNPFPGVHICENSGCARVVIGHLSLSVLLKPDTEHESYEDREYGKESYNSMEFGATSSSLPSFEHYGSTYTLERLYKSENCNEDYRFGQNLEKALAEEKPFQCKQCGKGFSSSRYFRRHERRHRAKKSYICKQCGKAFAFPTYLQTHERIHTGEKPYVCVQCGKTFAHSRSLKTHKRTHSVRDLFVCNYCGKTLRHYSSLQIHTRIHTGEKPYVCKPCGKAFITYRSFRIHERIHTGETPYECKQCGNTFMRWIQLRKHEIIHSGVKPYACKLCGKSFTCSGSLRTHERIHTGERPYVCDQCGYSFTRLNSLLRHKITHTGEKPYVCNHCGKTFPRSASLQRHVKIHTEEKPFVCKQCGVAFATSTDLLEHEQTHIDEKPYICEQCGNAFVLWSQFQKHKALHSVPVSYICKQCGKSFTSSRSLKTHERIHTGEKPYECKQCGKTFLWSYSLQRHEKTHSDGKPHVCKQCGQAFPYYSHLQVHEKIHIDDEPYNCKYCGKPFFTLNHLHRHEVLHTTLDSSVF", "length": 616, "header": "tr|A0A8C2MPU2-1|A0A8C2MPU2_CRIGR Isoform 1 of Zinc finger protein 878 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100755677 PE=3 SV=1 CANONICAL=A0A8C2MPU2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755677", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755677", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPU2" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPU2", "url": 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This record is derived from a genomic sequence (NW_003613943.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503189", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503189" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MPV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPV8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tpd52l2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPV8", "locus": {} } ], "crossref": [ { "id": "100763204", "url": "https://www.ncbi.nlm.nih.gov/gene/100763204", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007327", "database": "InterPro", "categories": [ "Protein Classification" 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griseus OX=10029 GN=Tpd52l2 PE=3 SV=1 CANONICAL=A0A8C2MPV8-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QLS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLS2/entry", "sequence": { "sequence": "MDSASQDINLNSPNKGVLSDFMTDVPVGPGVASRAQAVEGLTEVEEEELRAELAKVEEEIITLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSTAYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTMGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVGSRENGSDNLPSSPGSGDQPLSDHAPF", "length": 206, "header": "tr|A0A8C2QLS2-1|A0A8C2QLS2_CRIGR Computationally mapped isoform of Tumor protein D54 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tpd52l2 PE=3 SV=1 CANONICAL=A0A8C2MPV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G499-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G499/entry", "sequence": { "sequence": "MDSASQDINLNSPNKGVLSDFMTDVPVGPGVASRAQAVEGLTEVEEEELRAELAKVEEEIITLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSTAYKKTQETLSQAGQKTSAALSTMGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVGSRENGSDNLPSSPGSGDQPLSDHAPF", "length": 186, "header": "tr|A0A9J7G499-1|A0A9J7G499_CRIGR Computationally mapped isoform of Tumor protein D54 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tpd52l2 PE=3 SV=1 CANONICAL=A0A8C2MPV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G4B5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B5/entry", "sequence": { "sequence": "MDSASQDINLNSPNKGVLSDFMTDVPVGPGVASRAQAVEGLTEVEEEELRAELAKVEEEIITLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSTAYVKTSEKLGEWNEKVTQSDLNSATFKSFEDRVGTIKSKVVGSRENGSDNLPSSPGSGDQPLSDHAPF", "length": 172, "header": "tr|A0A9J7G4B5-1|A0A9J7G4B5_CRIGR Computationally mapped isoform of Tumor protein D54 isoform X7 OS=Cricetulus griseus OX=10029 GN=Tpd52l2 PE=3 SV=1 CANONICAL=A0A8C2MPV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G8P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8P0/entry", "sequence": { "sequence": "MDSASQDINLNSPNKGVLSDFMTDVPVGPGVASRAQAVEGLTEVEEEELRAELAKVEEEIITLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSTAYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTMGSAISRKLGDMSSYSIRHSISMPAMRNSATFKSFEDRVGTIKD", "length": 190, 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503751", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503751" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQ96", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ96" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tstd3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ96", "locus": {} } ], "crossref": [ { "id": "cd01519", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01519", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764063", "url": "https://www.ncbi.nlm.nih.gov/gene/100764063", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764063", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764063", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEWVTYE", "url": "https://omabrowser.org/oma/group/KEWVTYE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MQ96", "url": "https://www.orthodb.org/?gene=A0A8C2MQ96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JGZ2", "url": "https://www.orthodb.org/?gene=A0A9J7JGZ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44086", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44086", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44086:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44086:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00581", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00581", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503751", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503751", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MQ96", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQ96-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGZ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLARRVLGASHRAALGSVEAALGGLKSIWGSSQHFYSTLPKDVTYRELKNLLNSKNIMLIDVRETWEILEHGKIPGSINIPLDEVSEALQMNPRDFKEKYHEVKPSKSDSLVFSCFAGVRSKQAMNTALSLGFNSAQHYAGGWKEWVTYEMSENKQEN", "length": 158, "header": "tr|A0A8C2MQ96-1|A0A8C2MQ96_CRIGR Isoform 1 of Sulfurtransferase OS=Cricetulus griseus OX=10029 GN=Tstd3 PE=4 SV=1 CANONICAL=A0A8C2MQ96-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MQ96-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ96/entry", "sequence": { "sequence": "MLARRVLGASHRAALGSVEAALGGLKSIWGSSQHFYSTLPKDVTYRELKNLLNSKNIMLIDVRETWEILEHGKIPGSINIPLDEVSEALQMNPRDFKEKYHEVKPSKSDSLVFSCFAGVRSKQAMNTALSLGFNSAQHYAGGWKEWVTYEMSENKQEN", "length": 158, "header": "tr|A0A8C2MQ96-1|A0A8C2MQ96_CRIGR Isoform 1 of Sulfurtransferase OS=Cricetulus griseus OX=10029 GN=Tstd3 PE=4 SV=1 CANONICAL=A0A8C2MQ96-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGZ2/entry", "sequence": { "sequence": "MLARRVLGASHRAALGSVEAALGGLKSIWGSSQHFYSTLPKDVTYRELKNLLNSKNIMLIDVRETWEILEHGKIPGSINIPLDEVSEALQMNPRDFKEKYHEVKPSKSDSLVFSCFAGVRSKQAMNTALSLGFNRTVDEAKENSSLGIKG", "length": 150, "header": "tr|A0A9J7JGZ2-1|A0A9J7JGZ2_CRIGR Computationally mapped isoform of Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tstd3 PE=4 SV=1 CANONICAL=A0A8C2MQ96-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MQD7-1", "uniprot_ac": "A0A8C2MQD7", "uniprot_id": "A0A8C2MQD7_CRIGR", "mass": { "chemical_mass": 34371.0, "monoisotopic_mass": 34371.0 }, "refseq": { "ac": "XP_027262992", "name": "T-cell leukemia homeobox protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262992" }, "gene_names": [ { "name": "Tlx1", "type": "recommended", "evidence": [ { "id": "A0A8C2MQD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD7" } ] }, { "name": "Tlx1", "type": "synonym", "evidence": [ { "id": "XP_027262992", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262992" } ] } ], "protein_names": [ { "name": "T-cell leukemia homeobox protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027262992", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262992" }, { "id": "A0A8C2MQD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262992", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262992" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tlx1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD7", "locus": {} } ], "crossref": [ { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751022", "url": "https://www.ncbi.nlm.nih.gov/gene/100751022", "database": "GeneID", "categories": [ "Genome 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"database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45921:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45921:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262992", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262992", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MQD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGSSAAGAGAGATGAYGAGGPGGPGGPAGGGGGGACSMGPLAGSYNVNMALAGGPGPGGGGGGAGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAVPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE", "length": 332, "header": "tr|A0A8C2MQD7-1|A0A8C2MQD7_CRIGR Isoform 1 of T-cell leukemia homeobox protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tlx1 PE=4 SV=1 CANONICAL=A0A8C2MQD7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MQD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQD7/entry", "sequence": { "sequence": "MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGSSAAGAGAGATGAYGAGGPGGPGGPAGGGGGGACSMGPLAGSYNVNMALAGGPGPGGGGGGAGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAVPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE", "length": 332, "header": "tr|A0A8C2MQD7-1|A0A8C2MQD7_CRIGR Isoform 1 of T-cell leukemia homeobox protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tlx1 PE=4 SV=1 CANONICAL=A0A8C2MQD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GW08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW08/entry", "sequence": { "sequence": "MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGSSAAGAGAGATGAYGAGGPGGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAVPGVNNLTGLTFPWMESNRRYTKDRFTVALSPFTVTRRIGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE", "length": 293, "header": "tr|A0A9J7GW08-1|A0A9J7GW08_CRIGR Computationally mapped isoform of T-cell leukemia homeobox protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tlx1 PE=4 SV=1 CANONICAL=A0A8C2MQD7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027249304.1. 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"end_pos": 683 }, { "start_pos": 690, "end_pos": 692 }, { "start_pos": 715, "end_pos": 717 }, { "start_pos": 732, "end_pos": 734 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027271526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271526" }, { "id": "A0A8C2MQG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271526" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C2cd2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4", "locus": {} } ], "crossref": [ { "id": "cd21682", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21682", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762912", "url": "https://www.ncbi.nlm.nih.gov/gene/100762912", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039934", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039934", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762912", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762912", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MQG4", "url": "https://www.orthodb.org/?gene=A0A8C2MQG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21119:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21119:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18696", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18696", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271526", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MQG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWD2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPT7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQW6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQW6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSWLGEVQWLIMVSLFVAALGTVGLYLAQWTLARARPPPRRREEPEERRRRESDTLLSWIMTLDSWGTQWQTAWVTALNYEAQRRGGPLHLSFQQNPQAQSLQLTVGEVSSVVKSTQEKVVICHVVGDTLQFLVSARPASTTSSECQLYDVQLSPFHLKMEFHMEEKRDDIQIRWSFTHAPETAIKIQPQAPGEKQVLEVNVLSEALKDLFKHLVGAASPSVYLSTKPTQIKEAQTLQCTSSTAQEPCPPKPPRAHELKLQVKNIRVSLLTHPGASGSISHVCVAQLNDPAQQFISTLVRNTTDLTWEEEFTFELNAKSKELLLQISENECSSEGLLGTATIHLDLFRKQPNGPQTFRLVSGTEPDSLVLGSVTAEFSYIEPGELKSWPALPPVSATKIEKDRTVMPCGTVVTTVTAVKTKPRFDTGRVSPLSSESPVRTPIKVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVAEVAIRQLSESSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDASSTLCSPEATAASSTTPPEDDEPAQALPALKPRENDLDSWDLEKESPAAAWSSSALQEPDGDELSESSLSALELGANKKHKEGILRKSAKLFFRRRHQQKDPGMSQSHNDLVFLQQPEGKLKKGATLSRLLNKKLLPRHRGKHAMNGVPREPCT", "length": 697, "header": "tr|A0A8C2MQG4-1|A0A8C2MQG4_CRIGR Isoform 1 of C2 domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=C2cd2 PE=4 SV=1 CANONICAL=A0A8C2MQG4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MQG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4/entry", "sequence": { "sequence": "MGSWLGEVQWLIMVSLFVAALGTVGLYLAQWTLARARPPPRRREEPEERRRRESDTLLSWIMTLDSWGTQWQTAWVTALNYEAQRRGGPLHLSFQQNPQAQSLQLTVGEVSSVVKSTQEKVVICHVVGDTLQFLVSARPASTTSSECQLYDVQLSPFHLKMEFHMEEKRDDIQIRWSFTHAPETAIKIQPQAPGEKQVLEVNVLSEALKDLFKHLVGAASPSVYLSTKPTQIKEAQTLQCTSSTAQEPCPPKPPRAHELKLQVKNIRVSLLTHPGASGSISHVCVAQLNDPAQQFISTLVRNTTDLTWEEEFTFELNAKSKELLLQISENECSSEGLLGTATIHLDLFRKQPNGPQTFRLVSGTEPDSLVLGSVTAEFSYIEPGELKSWPALPPVSATKIEKDRTVMPCGTVVTTVTAVKTKPRFDTGRVSPLSSESPVRTPIKVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVAEVAIRQLSESSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDASSTLCSPEATAASSTTPPEDDEPAQALPALKPRENDLDSWDLEKESPAAAWSSSALQEPDGDELSESSLSALELGANKKHKEGILRKSAKLFFRRRHQQKDPGMSQSHNDLVFLQQPEGKLKKGATLSRLLNKKLLPRHRGKHAMNGVPREPCT", "length": 697, "header": "tr|A0A8C2MQG4-1|A0A8C2MQG4_CRIGR Isoform 1 of C2 domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=C2cd2 PE=4 SV=1 CANONICAL=A0A8C2MQG4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWD2/entry", "sequence": { "sequence": "MGSWLGEVQWLIMVSLFVAALGTVGLYLAQWTLARARPPPRRREEPEERRRRESDTLLSWIMTLDSWGTQWQTAWVTALNYEAQRRGGPLHLSFQQNPQAQSLQLTVGEVSSVVKSTQEKVVICHVVGDTLQFLVSARPASTTSSECQLYDVQLSPFHLKMEFHMEEKRDDIQIRWSFTHAPETAIKIQPQAPGEKQVLEVNVLSEALKDLFKHLVGAASPSVYLSTKPTQIKEAQTLQCTSSTAQEPCPPKPPRAHELKLQVKNIRVSLLTHPGASGSISHVCVAQLNDPAQQFISTLVRNTTDLTWEEEFTFELNAKSKELLLQISENECSSEGLLGTATIHLDLFRKQPNGPQTFRLVSGTEPDSLVLGSVTAEFSYIEPGELKSWPALPPVSATKIEKDRTVMPCGTVVTTVTAVKTKPRFDTGRVSPLSSESPVRTPIKVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVAEVAIRQLSESSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDASSTLCSPEATAASSTTPPEDDEPAQALPALKPRENDLDSWDLEKESPAAAWSSSALQEPDGDELSESSLSALELGANKKHKEDHYANQN", "length": 632, "header": "tr|A0A9J7GWD2-1|A0A9J7GWD2_CRIGR Computationally mapped isoform of C2 domain-containing protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=C2cd2 PE=4 SV=1 CANONICAL=A0A8C2MQG4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GX42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX42/entry", "sequence": { "sequence": "MGSWLGEVQWLIMVSLFVAALGTVGLYLAQWTLARARPPPRRREEPEERRRRESDTLLSWIMTLDSWGTQWQTAWVTALNYEAQRRGGPLHLSFQQNPQAQSLQLTVGEVSSVVKSTQEKVVICHVVGDTLQFLVSARPASTTSSECQLYDVQLSPFHLKMEFHMEEKRDDIQIRWSFTHAPETAIKIQPQAPGEVLEVNVLSEALKDLFKHLVGAASPSVYLSTKPTQIKEAQTLQCTSSTAQEPCPPKPPRAHELKLQVKNIRVSLLTHPGASGSISHVCVAQLNDPAQQFISTLVRNTTDLTWEEEFTFELNAKSKELLLQISENECSSEGLLGTATIHLDLFRKQPNGPQTFRLVSGTEPDSLVLGSVTAEFSYIEPGELKSWPALPPVSATKIEKDRTVMPCGTVVTTVTAVKTKPRFDTGRVSPLSSESPVRTPIKVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVAEVAIRQLSESSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDASSTLCSPEATAASSTTPPEDDEPAQALPALKPRENDLDSWDLEKESPAAAWSSSALQEPDGDELSESSLSALELGANKKHKEGILRKSAKLFFRRRHQQKDPGMSQSHNDLVFLQQPEGKLKKGATLSRLLNKKLLPRHRGKHAMNGVPREPCT", "length": 695, "header": "tr|A0A9J7GX42-1|A0A9J7GX42_CRIGR Computationally mapped isoform of C2 domain-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=C2cd2 PE=4 SV=1 CANONICAL=A0A8C2MQG4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPT7/entry", "sequence": { "sequence": "MGSWLGEVQWLIMVSLFVAALGTVGLYLAQWTLARARPPPRRREEPEERRRRESDTLLSWIMTLDSWGTQWQTAWVTALNYEAQRRGVVICHVVGDTLQFLVSARPASTTSSECQLYDVQLSPFHLKMEFHMEEKRDDIQIRWSFTHAPETAIKIQPQAPGEKQVLEVNVLSEALKDLFKHLVGAASPSVYLSTKPTQIKEAQTLQCTSSTAQEPCPPKPPRAHELKLQVKNIRVSLLTHPGASGSISHVCVAQLNDPAQQFISTLVRNTTDLTWEEEFTFELNAKSKELLLQISENECSSEGLLGTATIHLDLFRKQPNGPQTFRLVSGTEPDSLVLGSVTAEFSYIEPGELKSWPALPPVSATKIEKDRTVMPCGTVVTTVTAVKTKPRFDTGRVSPLSSESPVRTPIKVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVAEVAIRQLSESSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDASSTLCSPEATAASSTTPPEDDEPAQALPALKPRENDLDSWDLEKESPAAAWSSSALQEPDGDELSESSLSALELGANKKHKEGILRKSAKLFFRRRHQQKDPGMSQSHNDLVFLQQPEGKLKKGATLSRLLNKKLLPRHRGKHAMNGVPREPCT", "length": 664, "header": "tr|A0A9J7JPT7-1|A0A9J7JPT7_CRIGR Computationally mapped isoform of C2 domain-containing protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=C2cd2 PE=4 SV=1 CANONICAL=A0A8C2MQG4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQW6/entry", "sequence": { "sequence": "MGSWLGEVQWLIMVSLFVAALGTVGLYLAQWTLARARPPPRRREEPEERRRRESDTLLSWIMTLDSWGTQWQTAWVTALNYEAQRRGGPLHLSFQQNPQAQSLQLTVGEVSSVVKSTQEKVVICHVVGDTLQFLVSARPASTTSSECQLYDVQLSPFHLKMEFHMEEKRDDIQIRWSFTHAPETAIKIQPQAPGEQVLEVNVLSEALKDLFKHLVGAASPSVYLSTKPTQIKEAQTLQCTSSTAQEPCPPKPPRAHELKLQVKNIRVSLLTHPGASGSISHVCVAQLNDPAQQFISTLVRNTTDLTWEEEFTFELNAKSKELLLQISENECSSEGLLGTATIHLDLFRKQPNGPQTFRLVSGTEPDSLVLGSVTAEFSYIEPGELKSWPALPPVSATKIEKDRTVMPCGTVVTTVTAVKTKPRFDTGRVSPLSSESPVRTPIKVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVAEVAIRQLSESSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDASSTLCSPEATAASSTTPPEDDEPAQALPALKPRENDLDSWDLEKESPAAAWSSSALQEPDGDELSESSLSALELGANKKHKEGILRKSAKLFFRRRHQQKDPGMSQSHNDLVFLQQPEGKLKKGATLSRLLNKKLLPRHRGKHAMNGVPREPCT", "length": 696, "header": "tr|A0A9J7JQW6-1|A0A9J7JQW6_CRIGR Computationally mapped isoform of C2 domain-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=C2cd2 PE=4 SV=1 CANONICAL=A0A8C2MQG4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQG4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762912", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762912", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 479, "end_pos": 481, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MQG4", "database": "UniProtKB", "url": 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Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LAT9-1", "protein_name": "Intraflagellar transport associated protein", "gene_name": "Iftap", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPAQIPRRPEIMSEDQLMKEVLDKFVNCHEQTYEEFLSTFTHLSKEDNVAKGGAHGMNLSENTLTAEKWNHKIESNGHHFRNRTIFLHDSSECSEEDQIVIDEGQKVGSSFQGDMTRAGKVKVDNFLDLEDVDTEEESKPQMNKDWMALPGEVEQGISISAPAYVPAVGLPLTSEGKPTPAVGRTQTQTEEILGDEVQPFFLDEDFDYDNVTLTPKFTAGEIATIQELAKQKRVDTSTHVCELHD", "length": 245 }, "evidence": [ { "id": "A0A8C2MQQ5", "url": "https://omabrowser.org/oma/group/A0A8C2MQQ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3ZBP0-1", "protein_name": "Intraflagellar transport-associated protein", "gene_name": "IFTAP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPAKTPELEMMDEDRLIEEVLDKFVNCHEQTYEEFLRTFTHLSKDNVTKREAFGTNSSENNFTSIKFTQRNEPNDCRLSNKAIFLHTSSQCSEEEQIMIGDGQKAGSSFQGDLNRAGKVKVDNFLDIEDLDLDEEINPQLSKDVLLLPGQVEQEVSLSVPSYIPSVAIQPVTPGTKPRPTVKAADKQSKEIVGDEVQPFSLDEEFDYDAVVLTPKFTPAEMNAIKELSKQKTKSADLEDPHD", "length": 242 }, "evidence": [ { "id": "A0A8C2MQQ5", "url": "https://omabrowser.org/oma/group/A0A8C2MQQ5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86VG3-1", "protein_name": "Intraflagellar transport-associated protein", "gene_name": "IFTAP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAHMSGLEIMDEDQLIKDVLDKFLNCHEQTYDEEFLNTFTHLSQEDHVSKRGVFGTDSSENIFTSAKVTHKNEADDYHLRNKTIFLRTSSQCLEEQVDNFLDLEDLDMDEEIKPQMSEDLLLLPGEVEQDVSTSIPSCIPFVAQPPTCEVKPKPSVKRMDKQTEEILGDEVQLFSLDEEFDYDNVMLTSKFSPAEIENIKELCKQQKRKDTSPDLEKSCD", "length": 221 }, "evidence": [ { "id": "A0A8C2MQQ5", "url": "https://omabrowser.org/oma/group/A0A8C2MQQ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQI4-1", "protein_name": "Intraflagellar transport-associated protein", "gene_name": "Iftap", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAQIPRPEIMDEDQLMKEVLDKFVNCHEQTYEEFLSTFTHLSKEDNVAKWGAHGTDSSENIFSTVKWNHKTESNGRHFRNTSIFLHTSSEHSEEDQIVIDEGHKVGSSFQGDMTRAGKVKVDNFLDLEDVDMEEESKPQMNKDCLLLPGEVEQDISTSVPSYDPSVDLPLTSEVRPKPAVGRTQKQTEEILGDEVQPFFLDEEFDYDNVTLTPKFTAGEIATIQELSKQKRVGSGTNVCELHD", "length": 244 }, "evidence": [ { "id": "A0A8C2MQQ5", "url": "https://omabrowser.org/oma/group/A0A8C2MQQ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQQ5" } ], "pmid": "" }, { "name": "9+0 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"UniProtKB", "id": "A0A8C2MQQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MQS4-1", "uniprot_ac": "A0A8C2MQS4", "uniprot_id": "A0A8C2MQS4_CRIGR", "mass": { "chemical_mass": 22847.0, "monoisotopic_mass": 22847.0 }, "refseq": { "ac": "XP_003503193", "name": "sterile alpha motif domain-containing protein 10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503193" }, "gene_names": [ { "name": "Samd10", "type": "recommended", "evidence": [ { "id": "A0A8C2MQS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4" } ] }, { "name": "Samd10", "type": "synonym", "evidence": [ { "id": "XP_003503193", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503193" } ] } ], "protein_names": [ { "name": "Sterile alpha motif domain-containing protein 10", "type": "synonym", "evidence": [ { "id": "A0A8C2MQS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4/entry#names_and_taxonomy" } ] }, { "name": "sterile alpha motif domain-containing protein 10", "type": "synonym", "evidence": [ { "id": "XP_003503193", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503193" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613943.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503193", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503193" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Samd10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4", "locus": {} } ], "crossref": [ { "id": "cd09510", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09510", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764555", "url": "https://www.ncbi.nlm.nih.gov/gene/100764555", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052268", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052268", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764555", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764555", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HCGLYHT", "url": "https://omabrowser.org/oma/group/HCGLYHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MQS4", "url": "https://www.orthodb.org/?gene=A0A8C2MQS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20843", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20843", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20843:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20843:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503193", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503193", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MQS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFTELRSKLSPPRARAGAVRTGFGERPDVDATAHFSFCQTLLEHTVSAENIPCHLPRTPGTSFTWHDSRSQRASSSRPIKLLQQPGSETPQARLYSDHYGLYHTSPSLCGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNADKLQRMGLTQEAQRQEVLQQVLHLQVREEGRSLQLLSQASFGNMS", "length": 202, "header": "tr|A0A8C2MQS4-1|A0A8C2MQS4_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 10 OS=Cricetulus griseus OX=10029 GN=Samd10 PE=4 SV=1 CANONICAL=A0A8C2MQS4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4/entry", "sequence": { "sequence": "MFTELRSKLSPPRARAGAVRTGFGERPDVDATAHFSFCQTLLEHTVSAENIPCHLPRTPGTSFTWHDSRSQRASSSRPIKLLQQPGSETPQARLYSDHYGLYHTSPSLCGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNADKLQRMGLTQEAQRQEVLQQVLHLQVREEGRSLQLLSQASFGNMS", "length": 202, "header": "tr|A0A8C2MQS4-1|A0A8C2MQS4_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 10 OS=Cricetulus griseus OX=10029 GN=Samd10 PE=4 SV=1 CANONICAL=A0A8C2MQS4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764555", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764555", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8W4FP77-1", "protein_name": "Sterile alpha motif domain containing 10", "gene_name": "SAMD10", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTELRTKLSPPRGRSGAVRAGFGERRDVDATAHFSFCRTLLEHTVSAESIPCHLPRTPGTSLTWHDSRSQRAAGGRPVKLLQQPGTEAPQGRLYSDHYGLYHTSPSLGGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNAEKLQRMGLAQEAQRQEVLQQVLRLQVREEGRSLQLLSQASFGNMS", "length": 202 }, "evidence": [ { "id": "A0A8C2MQS4", "url": "https://omabrowser.org/oma/group/A0A8C2MQS4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7TST3-1", "protein_name": "Sterile alpha motif domain-containing protein 10", "gene_name": "Samd10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFTELRSKLSPPRARAGAVRPGFGERPDVDASAHFSFCQTLLEHTVSAENIPCHLPRTPGTSLTWHDSRSQRASSSRPIKLLQQPGSEIPQARLYSDHYGLYHTSPSLGGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNADKLQRMGLTQEAQRQEVLQQVLHLQVREEGRSLKLLSQASFGNMS", "length": 202 }, "evidence": [ { "id": "A0A8C2MQS4", "url": "https://omabrowser.org/oma/group/A0A8C2MQS4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BYL1-1", "protein_name": "Sterile alpha motif domain-containing protein 10", "gene_name": "SAMD10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFTELRSKLSPPRGRAGAVRAGFGERRDVDATAHFSFCRTLLEHTVSAESIPCHLPRTPGTSLTWHDSRSQRAASSRPIKLLQQPGTDTPQGRLYSDHYGLYHTSPSLGGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNAEKLQRMGLAQEAQRQEVLQQVLRLQVREEGRSLQLLSQASFGKMS", "length": 202 }, "evidence": [ { "id": "A0A8C2MQS4", "url": "https://omabrowser.org/oma/group/A0A8C2MQS4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell surface receptor protein tyrosine kinase signaling pathway", "id": "GO:0007169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007169", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic side of plasma membrane", "id": "GO:0009898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009898", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MQS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS4" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 118, "end_pos": 184, "start_aa": "Trp", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MQS7-1", "uniprot_ac": "A0A8C2MQS7", "uniprot_id": "A0A8C2MQS7_CRIGR", "mass": { "chemical_mass": 33281.0, "monoisotopic_mass": 33281.0 }, "refseq": { "ac": "XP_027245018", "name": "leucine-rich repeat-containing protein 73 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245018" }, "gene_names": [ { "name": "Lrrc73", "type": "recommended", "evidence": [ { "id": "A0A8C2MQS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS7" } ] }, { "name": "Lrrc73", "type": "synonym", "evidence": [ { "id": "XP_027245018", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245018" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat-containing protein 73 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MQS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS7/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 73 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027245018", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245018" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245018", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245018" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQS7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc73", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS7", "locus": {} } ], "crossref": [ { "id": "100757911", "url": "https://www.ncbi.nlm.nih.gov/gene/100757911", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757911", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757911", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MQS7", "url": "https://www.orthodb.org/?gene=A0A8C2MQS7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24111:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24111:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027245018", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245018", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MQS7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J780", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J780", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J780-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J780-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPSSIQISGEPLSGAEVRDICRGLRDNAVRLLSLRGCRLCDRDFGRICRALAGATSLAQLNLNLGVVSSPSRIKQLAEALRTNRSIQSLFLHGSPLTDAGLALLNPALALHPALVALDLGDCMLGDEAINLICGLLPPDGAKSGLKELTLSANPGITPKGWSRLAIAVAHSSQVRVLNLDYNPLGDHVAGMLAVAVASSRTLEVLDLEGTGLTNQSAQTLLDMVENYPTALRSLVLAENSISPALQQQICDLLSEGEEEEEVAGGAVDTQEWGRGREPAAHQRGGSSWMCSSDPSSQMVLMTSGLGDSLLAETEM", "length": 316, "header": "tr|A0A8C2MQS7-1|A0A8C2MQS7_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 73 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrrc73 PE=4 SV=1 CANONICAL=A0A8C2MQS7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MQS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS7/entry", "sequence": { "sequence": "MLPSSIQISGEPLSGAEVRDICRGLRDNAVRLLSLRGCRLCDRDFGRICRALAGATSLAQLNLNLGVVSSPSRIKQLAEALRTNRSIQSLFLHGSPLTDAGLALLNPALALHPALVALDLGDCMLGDEAINLICGLLPPDGAKSGLKELTLSANPGITPKGWSRLAIAVAHSSQVRVLNLDYNPLGDHVAGMLAVAVASSRTLEVLDLEGTGLTNQSAQTLLDMVENYPTALRSLVLAENSISPALQQQICDLLSEGEEEEEVAGGAVDTQEWGRGREPAAHQRGGSSWMCSSDPSSQMVLMTSGLGDSLLAETEM", "length": 316, "header": "tr|A0A8C2MQS7-1|A0A8C2MQS7_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 73 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrrc73 PE=4 SV=1 CANONICAL=A0A8C2MQS7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J780-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J780/entry", "sequence": { "sequence": "MPSPSCLHGSPLTDAGLALLNPALALHPALVALDLGDCMLGDEAINLICGLLPPDGAKSGLKELTLSANPGITPKGWSRLAIAVAHSSQVRVLNLDYNPLGDHVAGMLAVAVASSRTLEVLDLEGTGLTNQSAQTLLDMVENYPTALRSLVLAENSISPALQQQICDLLSEGEEEEEVAGGAVDTQEWGRGREPAAHQRGGSSWMCSSDPSSQMVLMTSGLGDSLLAETEM", "length": 231, "header": "tr|A0A9J7J780-1|A0A9J7J780_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 73 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lrrc73 PE=4 SV=1 CANONICAL=A0A8C2MQS7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278548", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278548" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Stpg3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR24", "locus": {} } ], "crossref": [ { "id": "100773470", "url": "https://www.ncbi.nlm.nih.gov/gene/100773470", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773470", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773470", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MR24", "url": "https://www.orthodb.org/?gene=A0A8C2MR24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF07004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278548", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278548", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MR24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MR24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4H0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNFDQKAVKFLANFYINGGKHWTRGPLSQQPLHPTQPEAAVLCWDQELGAACDEMWPPKMRRAPRGFRFRMGTPKQPTGTLRELLLEQRPPIMTDLDVPGPTKYGVPSASLRESSPHPQYTMGHKYPGREGGGRRAWQTEWLQSESPFTQKTDFNQERKWPSPAEYRPLSQPAFPAFTFGGRRHSLVKIPESHLRPGMLRDRAPASYTPLMAPQQPSGAKQPSPNSYDIVPGCRLQTTRSPAFSMSRSPAFASWVSSSRTPGPAAYYVEDCYNSRFPSSPGVVIQGVRRPKRHDTGPFCSL", "length": 301, "header": "tr|A0A8C2MR24-1|A0A8C2MR24_CRIGR Isoform 1 of Protein STPG3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Stpg3 PE=4 SV=1 CANONICAL=A0A8C2MR24-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MR24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR24/entry", "sequence": { "sequence": "MNFDQKAVKFLANFYINGGKHWTRGPLSQQPLHPTQPEAAVLCWDQELGAACDEMWPPKMRRAPRGFRFRMGTPKQPTGTLRELLLEQRPPIMTDLDVPGPTKYGVPSASLRESSPHPQYTMGHKYPGREGGGRRAWQTEWLQSESPFTQKTDFNQERKWPSPAEYRPLSQPAFPAFTFGGRRHSLVKIPESHLRPGMLRDRAPASYTPLMAPQQPSGAKQPSPNSYDIVPGCRLQTTRSPAFSMSRSPAFASWVSSSRTPGPAAYYVEDCYNSRFPSSPGVVIQGVRRPKRHDTGPFCSL", "length": 301, "header": "tr|A0A8C2MR24-1|A0A8C2MR24_CRIGR Isoform 1 of Protein STPG3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Stpg3 PE=4 SV=1 CANONICAL=A0A8C2MR24-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H0/entry", "sequence": { "sequence": "MNFDQKAVKFLANFYINGGKHWTRGPLSQQPLHPTQPEAAVLCWDQELGAACDEMWPPKMRRAPRGFRFRMGTPKQPTGTLRELLLEQRPPIMTDLDVPGPTKYGVPSASLRESSPHPQYTMGHKYPGREGGGRRAWQTEWLQSESPFTQKTDFNQERKPSGAKQPSPNSYDIVPGCRLQTTRSPAFSMSRSPAFASWVSSSRTPGPAAYYVEDCYNSRFPSSPGVVIQGVRRPKRHDTGPFCSL", "length": 245, "header": "tr|A0A9J7H4H0-1|A0A9J7H4H0_CRIGR Computationally mapped isoform of Protein STPG3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Stpg3 PE=4 SV=1 CANONICAL=A0A8C2MR24-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR24" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773470", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773470", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MR57-1", "uniprot_ac": "A0A8C2MR57", "uniprot_id": "A0A8C2MR57_CRIGR", "mass": { "chemical_mass": 24227.0, "monoisotopic_mass": 24227.0 }, "refseq": { "ac": "XP_016824002", "name": "protein FAM167A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824002" }, "gene_names": [ { "name": "Fam167a", "type": "recommended", "evidence": [ { "id": "A0A8C2MR57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57" } ] }, { "name": "Fam167a", "type": "synonym", "evidence": [ { "id": "XP_016824002", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824002" } ] } ], "protein_names": [ { "name": "Protein FAM167A", "type": "synonym", "evidence": [ { "id": "A0A8C2MR57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57/entry#names_and_taxonomy" } ] }, { "name": "protein FAM167A", "type": "synonym", "evidence": [ { "id": "XP_016824002", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824002" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613673.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016824002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824002" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR57", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam167a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57", "locus": {} } ], "crossref": [ { "id": "100755242", "url": "https://www.ncbi.nlm.nih.gov/gene/100755242", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051771", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755242", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755242", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PQIHIEE", "url": "https://omabrowser.org/oma/group/PQIHIEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MR57", "url": "https://www.orthodb.org/?gene=A0A8C2MR57", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016824002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016824002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MR57", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MR57-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVPRIQVDEVGENDRPAGAAAPPDDHLLSLKALTEKLRLETRRPSYLEWQARLEEQTWPFPRSAAQQEASLEEGACGGGEPSIPLRESRELLPPARSASQGDGPLTTGKLEGFQSIDEAITWLRKELAEMRLQDQQLARQLMRLRGDINKLKIEQTCRLHRRMLNDAAYELEERDELSDLFCDSPLASSFSLSTPLKLIGVTKMNINSRRFSLC", "length": 215, "header": "tr|A0A8C2MR57-1|A0A8C2MR57_CRIGR Isoform 1 of Protein FAM167A OS=Cricetulus griseus OX=10029 GN=Fam167a PE=3 SV=1 CANONICAL=A0A8C2MR57-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MR57-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57/entry", "sequence": { "sequence": "MSVPRIQVDEVGENDRPAGAAAPPDDHLLSLKALTEKLRLETRRPSYLEWQARLEEQTWPFPRSAAQQEASLEEGACGGGEPSIPLRESRELLPPARSASQGDGPLTTGKLEGFQSIDEAITWLRKELAEMRLQDQQLARQLMRLRGDINKLKIEQTCRLHRRMLNDAAYELEERDELSDLFCDSPLASSFSLSTPLKLIGVTKMNINSRRFSLC", "length": 215, "header": "tr|A0A8C2MR57-1|A0A8C2MR57_CRIGR Isoform 1 of Protein FAM167A OS=Cricetulus griseus OX=10029 GN=Fam167a PE=3 SV=1 CANONICAL=A0A8C2MR57-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR57", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR57", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR57" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755242", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755242", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287B6D5-1", "protein_name": "Family with sequence similarity 167 member A", "gene_name": "FAM167A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVPQVQVEEAVCGEEGPAEAAPPPDDHLRSLKALTEKLRLETRRPSYLEWQARLEEQTWPFPRPAAGQRGCAEKEAVLPPRAPGQHPPPNRRASQDDEPQATGRLEGFESIDEALAWLRKELTEMRLQDQQLARQLMRLRSDIHKLKIEQTCDLHRRMLNDATYELEERDELSDLFCDAPLASSFSLSAPLKLIGVTKMNINSRRFSLC", "length": 210 }, "evidence": [ { "id": "A0A8C2MR57", "url": "https://omabrowser.org/oma/group/A0A8C2MR57/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0YH59-1", "protein_name": "Family with sequence similarity 167 member A", "gene_name": "FAM167A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLPKIQIEEALDRTDAGTGSAVPPDDHLRSLKALTEKLRLETRRPSYLEWKAKLEEQAWKSPQPVGDEEGNEAKKGAEDTVPLRKVQLHLNGSPAQDKVTLTSGKIGDFESIDEALTWLRKELVTHLSARFCHLHMKIWPWYIGLNMPTELQPALSAGTCWESGPEKLIYSDMQIPALVFVLRGSVNAPAGPAAGQAADAPPQRHQQAEDRADLPPPPAHAQRRHV", "length": 227 }, "evidence": [ { "id": "A0A8C2MR57", "url": "https://omabrowser.org/oma/group/A0A8C2MR57/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZQX1-1", "protein_name": "Family with sequence similarity 167, member A", "gene_name": "Fam167a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVPRIQVEEVGEKDRPAGAAIPPDDHLLSLKALTEKLRLETRRPSYLEWQAKLEEQTWPFPRPAAQQEASLEQGACGGGEPLMSLREPRELLPPARSASGGDRPLATDKLEGFRSIDEAIAWLRKELAEMRLQDQQLARQLMRLRGDINKMKIEQTCRLHRRMLNDAAFELEERDELSDLFCDSPLAASFSLSTPLKLIGVTKMNINSRRFSLC", "length": 215 }, "evidence": [ { "id": "A0A8C2MR57", "url": "https://omabrowser.org/oma/group/A0A8C2MR57/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0V7M8-1", "protein_name": "Protein FAM167A", "gene_name": "FAM167A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSVPQIQVEEVAGGEEGPAGTTPPPDDHLRSLKALTEKLRLETRRPSYLEWQARLEEQTWPFPRPAAEPRGSGEEEPSLLRTRALRPHPPPNGRANQDDGHPPTGKLEGFESIDEAIAWLRKELMEMRLQDQQLARQLMRLRSDIHKLKIEQTCDLHRRMLNDATYELEERDELSDLFCDAPLASSFSLSAPLKLIGVTKMNINSRRFSLC", "length": 211 }, "evidence": [ { "id": "A0A8C2MR57", "url": "https://omabrowser.org/oma/group/A0A8C2MR57/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RFZ7-1", "protein_name": "Protein FAM167A", "gene_name": "fam167a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDASSIPQINIEDFDGLEVAPDDHLRNLKALTEKLRLETRRPSYLEWKERVEAQNTKGLAVSDGSTELEKDAGLKPRATPQRTIEDSQMTAGNGLISRSLGGFDNIDEALVWLRKELMEMRIQDQQLARQLMRLRGDINKLKVEQTCHLHRRMLNDATFGLEERDELSDLLCDGPVTPGFGLSSPLRLIGVTKMNINSRRFSLC", "length": 204 }, "evidence": [ { "id": "A0A8C2MR57", "url": "https://omabrowser.org/oma/group/A0A8C2MR57/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P1G6-1", "protein_name": "Protein FAM167A", "gene_name": "Fam167a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVPQIQVEEVSEKDRPAGAAVPPDDHLLSLKALTEKLRLETRRPSYLEWQARLEEQTWPFPRPAAQQEASLEQGACGGGEPLMPLKEPRDLLPPSASAGRGDRPLTTGKLEGFQSIDEAIAWLRKELAEMRLQDQQLARQLMRLRGDINKLKIEQTCRLHRRMLNDAAFELEERDELSDLFCDSPLASSFSLSMPLKLIGVTKMNINSRRFSLC", "length": 215 }, "evidence": [ { "id": "A0A8C2MR57", "url": "https://omabrowser.org/oma/group/A0A8C2MR57/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96KS9-1", "protein_name": "Protein FAM167A", "gene_name": "FAM167A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVPQIHVEEVGAEEGAGAAAPPDDHLRSLKALTEKLRLETRRPSYLEWQARLEEHTWPFPRPAAEPQASLEEGERGGQEPLLPLREAGQHPPSARSASQGARPLSTGKLEGFQSIDEAIAWLRKELTEMRLQDQQLARQLMRLRGDINKLKIEHTCRLHRRMLNDATYELEERDELADLFCDSPLASSFSLSTPLKLIGVTKMNINSRRFSLC", "length": 214 }, "evidence": [ { "id": "A0A8C2MR57", "url": "https://omabrowser.org/oma/group/A0A8C2MR57/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271111", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271111" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR72", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR72" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cmtm8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR72", "locus": {} } ], "crossref": [ { "id": "100768898", "url": "https://www.ncbi.nlm.nih.gov/gene/100768898", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768898", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768898", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MR72", "url": "https://www.orthodb.org/?gene=A0A8C2MR72", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271111", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271111", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MR72", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MR72-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7E8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESQRARSHTVTTTASSFAENFSTTSSSFAYDREFLCTLPGLLIVAEIVLGLLVWTLIAGTEYFRVPAFGWVMFVAVFYWVLTVFFLIVYITMTYTRIPQVPWTTVGLCFNGSAFLLYLSAAVVDASSVSPEKDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTTQ", "length": 173, "header": "tr|A0A8C2MR72-1|A0A8C2MR72_CRIGR Isoform 1 of CKLF-like MARVEL transmembrane domain-containing protein 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cmtm8 PE=4 SV=1 CANONICAL=A0A8C2MR72-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MR72-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR72/entry", "sequence": { "sequence": "MEESQRARSHTVTTTASSFAENFSTTSSSFAYDREFLCTLPGLLIVAEIVLGLLVWTLIAGTEYFRVPAFGWVMFVAVFYWVLTVFFLIVYITMTYTRIPQVPWTTVGLCFNGSAFLLYLSAAVVDASSVSPEKDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTTQ", "length": 173, "header": "tr|A0A8C2MR72-1|A0A8C2MR72_CRIGR Isoform 1 of CKLF-like MARVEL transmembrane domain-containing protein 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cmtm8 PE=4 SV=1 CANONICAL=A0A8C2MR72-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7E8/entry", "sequence": { "sequence": "MEESQRARSHTVTTTASSFAENFSTTSSSFAYDREFLCTLPGLLIVAEIGLCFNGSAFLLYLSAAVVDASSVSPEKDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTTQ", "length": 115, "header": "tr|A0A9J7K7E8-1|A0A9J7K7E8_CRIGR Computationally mapped isoform of CKLF-like MARVEL transmembrane domain-containing protein 8 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cmtm8 PE=4 SV=1 CANONICAL=A0A8C2MR72-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614351.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646047" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRA8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arl15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8", "locus": {} } ], "crossref": [ { "id": "cd04162", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04162", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750883", "url": "https://www.ncbi.nlm.nih.gov/gene/100750883", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750883", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750883", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLCCKGP", "url": "https://omabrowser.org/oma/group/RLCCKGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MRA8", "url": "https://www.orthodb.org/?gene=A0A8C2MRA8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J9R1", "url": "https://www.orthodb.org/?gene=A0A9J7J9R1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46693", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46693", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46693:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46693:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007646047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646047", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MRA8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MRA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9R1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9R1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9R1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDLRITEAFLYMDYLCFRALCCKGPPPARPEYDLVCIGLTGSGKSSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMNALKDSFSQLINLLEEKDLEAVRM", "length": 204, "header": "tr|A0A8C2MRA8-1|A0A8C2MRA8_CRIGR Isoform 1 of ADP-ribosylation factor-like protein 15 OS=Cricetulus griseus OX=10029 GN=Arl15 PE=3 SV=1 CANONICAL=A0A8C2MRA8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MRA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8/entry", "sequence": { "sequence": "MSDLRITEAFLYMDYLCFRALCCKGPPPARPEYDLVCIGLTGSGKSSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMNALKDSFSQLINLLEEKDLEAVRM", "length": 204, "header": "tr|A0A8C2MRA8-1|A0A8C2MRA8_CRIGR Isoform 1 of ADP-ribosylation factor-like protein 15 OS=Cricetulus griseus OX=10029 GN=Arl15 PE=3 SV=1 CANONICAL=A0A8C2MRA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9R1/entry", "sequence": { "sequence": "MLHLNCASGHKSRMTTCFRALCCKGPPPARPEYDLVCIGLTGSGKSSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMNALKDSFSQLINLLEEKDLEAVRM", "length": 204, "header": "tr|A0A9J7J9R1-1|A0A9J7J9R1_CRIGR Computationally mapped isoform of ADP-ribosylation factor-like protein 15 OS=Cricetulus griseus OX=10029 GN=Arl15 PE=3 SV=1 CANONICAL=A0A8C2MRA8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRA8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRA8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750883", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750883", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YQJ4-1", "protein_name": "ADP-ribosylation factor-like protein 15", "gene_name": "ARL15", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "EDLWDFHFEAIKPPPALSRGTGLSHRAGPAGRCLLCHLCAALGPAPTSLNGESECFRALCCKGPPPPRPEYDLVCIGLTGSGKTSLLSQLCSESPENIVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILKPCSLDDMEAVKDSFSLLINLLEERDFEPSRM", "length": 242 }, "evidence": [ { "id": "A0A8C2MRA8", "url": "https://omabrowser.org/oma/group/A0A8C2MRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LJG8-1", "protein_name": "ADP-ribosylation factor-like protein 15", "gene_name": "Arl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPFGLYLMIYAVCSRPTVSHVFLIGVKLKRFFFSFLVAGKCTQLKTINHLDSMLHLNCDSGRKSRMTTCFRALCCKGPPPARPEYDLVCIGLTGSGKTSLLSKLCSESPENVVSTTGFSIKAVPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDVDALKDSFSQLINLLEEKDHEAMRM", "length": 257 }, "evidence": [ { "id": "A0A8C2MRA8", "url": "https://omabrowser.org/oma/group/A0A8C2MRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1RDR4-1", "protein_name": "ADP-ribosylation factor-like protein 15", "gene_name": "arl15b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MYWKPKAFYQDLFYLHNRAWDLQRRKRSTELTLLASRFIQILFLTSERRGVLSQSREKKSRLWMHSINGSVSFHSRLDSGILFSGENSKKLSRNYMDYLCFRTLCCKGPPPPRPEYDVVCIGLTGSGKTSLLSRLCSEATDNIVPTTGFSIKAVPFQNAILNVKELGGADSIKKYWSRYYQGSQGVVFVLDSASSEEDLEVARTELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKSWILEGSTVDNMTAVKESFAQLIHLLEEKDQETGRI", "length": 287 }, "evidence": [ { "id": "A0A8C2MRA8", "url": "https://omabrowser.org/oma/group/A0A8C2MRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BGR6-1", "protein_name": "ADP-ribosylation factor-like protein 15", "gene_name": "Arl15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDLRITEAFLYMDYLCFRALCCKGPPPARPEYDLVCIGLTGSGKTSLLSELCSESPENVVSTTGFSIKAVPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDVDTLKDSFSQLINLLEEKDHEAVRM", "length": 204 }, "evidence": [ { "id": "A0A8C2MRA8", "url": "https://omabrowser.org/oma/group/A0A8C2MRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRA8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRA8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRA8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A8C2MRA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" }, { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 46, "amino_acid": "Ser", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 46, "end_pos": 46, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MRA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRA8" }, { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 63, "amino_acid": "Thr", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 63, "end_pos": 63, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MRF9-1", "uniprot_ac": "A0A8C2MRF9", "uniprot_id": "A0A8C2MRF9_CRIGR", "mass": { "chemical_mass": 46373.0, "monoisotopic_mass": 46373.0 }, "refseq": { "ac": "XP_027288968", "name": "lanC-like protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288968" }, "gene_names": [ { "name": "Lancl3", "type": "recommended", "evidence": [ { "id": "A0A8C2MRF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRF9" } ] }, { "name": "Lancl3", "type": "synonym", "evidence": [ { "id": "XP_027288968", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288968" } ] } ], "protein_names": [ { "name": "LanC-like protein 3", "type": "recommended", "evidence": [ { "id": "A0A8C2MRF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRF9/entry#names_and_taxonomy" } ] }, { "name": "lanC-like protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027288968", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288968" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027288968.1. 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This record is derived from a genomic sequence (NW_003616007.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293281", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293281" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRI7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRI7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113831260", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRI7", "locus": {} } ], "crossref": [ { "id": "113831260", "url": "https://www.ncbi.nlm.nih.gov/gene/113831260", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "XP_035293281", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293281", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MRI7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MRI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRILLLGASIVLLMDTVIRYCNLCNHFDGNRCLGGMRRCWKFNLLLTNRSCTTENFYFNDRITGLYLFRYSRLSCKRCGQGMFQEFHDLLRETFCCIERNYCNDGLTTLETSSLYFEDIKEKKELND", "length": 128, "header": "tr|A0A8C2MRI7-1|A0A8C2MRI7_CRIGR Isoform 1 of Prostate and testis expressed protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113831260 PE=4 SV=1 CANONICAL=A0A8C2MRI7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MRI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRI7/entry", "sequence": { "sequence": "MSRILLLGASIVLLMDTVIRYCNLCNHFDGNRCLGGMRRCWKFNLLLTNRSCTTENFYFNDRITGLYLFRYSRLSCKRCGQGMFQEFHDLLRETFCCIERNYCNDGLTTLETSSLYFEDIKEKKELND", "length": 128, "header": "tr|A0A8C2MRI7-1|A0A8C2MRI7_CRIGR Isoform 1 of Prostate and testis expressed protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113831260 PE=4 SV=1 CANONICAL=A0A8C2MRI7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MRJ2-1", "uniprot_ac": "A0A8C2MRJ2", "uniprot_id": "A0A8C2MRJ2_CRIGR", "mass": { "chemical_mass": 38450.0, "monoisotopic_mass": 38450.0 }, "refseq": { "ac": "XP_003505407", "name": "glycosyltransferase 1 domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505407" }, "gene_names": [ { "name": "Glt1d1", "type": "recommended", "evidence": [ { "id": "A0A8C2MRJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" } ] }, { "name": "Glt1d1", "type": "synonym", "evidence": [ { "id": "XP_003505407", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505407" } ] } ], "protein_names": [ { "name": "Glycosyltransferase 1 domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A8C2MRJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2/entry#names_and_taxonomy" } ] }, { "name": "glycosyltransferase 1 domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_003505407", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505407" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614144.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505407", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505407" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Glt1d1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2", "locus": {} } ], "crossref": [ { "id": "cd03801", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03801", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761757", "url": "https://www.ncbi.nlm.nih.gov/gene/100761757", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761757", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761757", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FSEWHSE", "url": "https://omabrowser.org/oma/group/FSEWHSE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MRJ2", "url": "https://www.orthodb.org/?gene=A0A8C2MRJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46660", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46660", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46660:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46660:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003505407", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505407", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MRJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAERLRDHLEAAGHMCVLRDAFDFESPSDIDNLITTENLEAALALHLYRGGRLLQGHGIPFGVIFGGTDLNEDANHKEKNEVMGRVLEEARFAVAFTEAMKDTAQVHWPHATGKIFVQSQGIATKPNANFNWNTFLQQSEIDQNADNLYVFLIICGLRPVKDPLYLVDAFSEWHQEEPSVYMVIVGPEVDPVFTREVKDRVRRAAGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLLSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLVRKLED", "length": 342, "header": "tr|A0A8C2MRJ2-1|A0A8C2MRJ2_CRIGR Isoform 1 of Glycosyltransferase 1 domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Glt1d1 PE=3 SV=1 CANONICAL=A0A8C2MRJ2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MRJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2/entry", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAERLRDHLEAAGHMCVLRDAFDFESPSDIDNLITTENLEAALALHLYRGGRLLQGHGIPFGVIFGGTDLNEDANHKEKNEVMGRVLEEARFAVAFTEAMKDTAQVHWPHATGKIFVQSQGIATKPNANFNWNTFLQQSEIDQNADNLYVFLIICGLRPVKDPLYLVDAFSEWHQEEPSVYMVIVGPEVDPVFTREVKDRVRRAAGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLLSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLVRKLED", "length": 342, "header": "tr|A0A8C2MRJ2-1|A0A8C2MRJ2_CRIGR Isoform 1 of Glycosyltransferase 1 domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Glt1d1 PE=3 SV=1 CANONICAL=A0A8C2MRJ2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761757", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761757", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A5G2QNI1-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "GLT1D1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRLLFLAVLRRHTGNAVTAQRIRDHLEATGHVCILKDAFDFGSPSEIANFIKAENLEAAVALHLYRGGRLVQGHGIPFGIIFGGTDLNEDVNHGEKNKVMGKVLEEARFAVAFTESMKEMAQTQWPHARGKIYVQNQGIATVPNATFNWNTFLQHSEINQSADSLHVFLLICGLRQVKDPLYLVEAFSEWHQEEPNVYMVIVGPEVDPVFTREVKAKVKRTPGVRLIGEMAQEDLHAVVKNCFAVVNSSVSEGMSAAILEAMDLEVPVLARNIPGNAAVVTHEVTGLLFSDPQEFVRLAKRLVSDPALEKEIVANAREYVREHHSWQVERNTYRHLIRTLQRSIED", "length": 346 }, "evidence": [ { "id": "A0A8C2MRJ2", "url": "https://omabrowser.org/oma/group/A0A8C2MRJ2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8M2BEP1-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "glt1d1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRVLFLAYLSPKTGNCTTAERIRNHIEAAGHTCVLCDTRGLSSASDVSSLMTQEPRFEAALAIHLFKGGRLLLDVGLPFGVVFGGTDVNEDVRDEHKRAVMEEVLRKARFAVAFTDALKEQAEMLLVCESKKIHVQPQGIETRVASNFSWSDFLHNTGVCSKQVENLQVFLLVCGLRRVKDPLYLVEAFSEWHSQNPLVILIIIGPKMDPVFTAEVEESVKRFVGVFLADDLSQEELHAAMQKSFALVNSSLSEGMSAAILEAMDLGLPVLARDVPGNAAIVEHQVTGLLYSSPQEFISMSQKLLDDKELRKRLVRNGKNYITTCHNPMKERTTYQELLKKLH", "length": 343 }, "evidence": [ { "id": "A0A8C2MRJ2", "url": "https://omabrowser.org/oma/group/A0A8C2MRJ2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZFX5-1", "protein_name": "Glycosyltransferase 1 domain containing 1", "gene_name": "GLT1D1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLLLLACLRAQTGNATTAARIHHLHDAGHICVLKDASRCESLTEIANLTSADQFDAALAIHLYKGGRHLQGSRIPFGIIFGGTDINEDIRSEEKRRVMGAVLREARFAVAFTTEMKELAAAEWPDARKKIYVQYQGIRTTPTETFDWYRFLQNADIPADTDDLRVFLLICGLRRVKDPLYLVDVFSDWHRKEPSVHLGIIGPAVDPLLTTEIKEKIKRAPGVHLLQEMPQDDLHAAMRRCFAVVNSSISEGMSAAILEAMDLNIPVLARNIPGNAAIIKHKDTGLLFSDPQEFVALSKSLMNDPIMEREIVTRAKDYVKKHHSWECERKAYQNLVLRLR", "length": 340 }, "evidence": [ { "id": "A0A8C2MRJ2", "url": "https://omabrowser.org/oma/group/A0A8C2MRJ2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4FUP9-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "Glt1d1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAGRLRDHLEAAGHMCVLRDAFDFESPSEIANLIMDENLEAALALHLYRGGRLLQGHSIPFGVIFGGTDLNEDANHKEKKEVMGKVLEEARFAVAFTEAMKDTAQVQWPHATGKIFVQSQGIATIPNANFNWNTFLQQSEIDQSADNLYIFLIICGLRPVKDPLYLVDAFSEWHQETPNVYMVIVGPEVDPVFTREVKERVRRAAGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLVSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLIRKLETNLED", "length": 346 }, "evidence": [ { "id": "A0A8C2MRJ2", "url": "https://omabrowser.org/oma/group/A0A8C2MRJ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZUX2-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "Glt1d1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAGRLRDHLEAAGHMCVLRDAFDFESPSEIANLIVGENLEAALALHLYRGGRLLQGHGIPFGVIFGGTDLNEDANHKEKKEVMGKVLEEARFAVAFTEAMKDTAEVQWPHATGKIFVQSQGIATIPNADFNWNTFLQQSEIDQSADDLHIFLVICGLRPVKDPLYLVDAFSEWHQETPNVYMVIVGPEVDPVFTREVKDRVRRASGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLVSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLIGKLEACSED", "length": 346 }, "evidence": [ { "id": "A0A8C2MRJ2", "url": "https://omabrowser.org/oma/group/A0A8C2MRJ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96MS3-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "GLT1D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAQRVRAHLEAAGHVCVLKDAFDFESRSEIANLILAENCEAALALHLYRGGRLLQGHRIPFGVIFGGTDVNEDANQAEKNTVMGRVLEEARFAVAFTESMKEMAQAQWPHAKGKVYVQSQGIATTPNAAFNWNTFLQRSEINQSADNLHIFLLICGLRQVKDPLYLVDAFSAWHQEEPNVHLVIVGPEVDPVFTREVKAKVKRAAGVRLIGEMPQEDLHAVVKNCFAVVNSSVSEGMSAAILEAMDLEVPVLARNIPGNAAVVKHEVTGLLFSNPQEFVHLAKRLVSDPALEKEIVVNGREYVRMYHSWQVERDTYQQLIRKLEGSTED", "length": 346 }, "evidence": [ { "id": "A0A8C2MRJ2", "url": "https://omabrowser.org/oma/group/A0A8C2MRJ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MRJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ2" }, { "id": "PF00534", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase family 1", "eco_id": "ECO_0000259", "start_pos": 161, "end_pos": 318, "start_aa": "Asn", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 247, "end_pos": 249 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MRJ5-1", "uniprot_ac": "A0A8C2MRJ5", "uniprot_id": "A0A8C2MRJ5_CRIGR", "mass": { "chemical_mass": 71644.0, "monoisotopic_mass": 71644.0 }, "refseq": { "ac": "XP_003495180", "name": "VPS9 domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495180" }, "gene_names": [ { "name": "Vps9d1", "type": "recommended", "evidence": [ { "id": "A0A8C2MRJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ] }, { "name": "Vps9d1", "type": "synonym", "evidence": [ { "id": "XP_003495180", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495180" } ] } ], "protein_names": [ { "name": "VPS9 domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495180", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495180" } ] }, { "name": "VPS9 domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MRJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 58 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613583.1) and transcript sequence (IACG01030769.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003495180.4. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495180", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495180" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Vps9d1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5", "locus": {} } ], "crossref": [ { "id": "100753080", "url": "https://www.ncbi.nlm.nih.gov/gene/100753080", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045046", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045046", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753080", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MRJ5", "url": "https://www.orthodb.org/?gene=A0A8C2MRJ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23101", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23101", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23101:SF98", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23101:SF98", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02204", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02204", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495180", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495180", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MRJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FS14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAGDGAAKPLQSAMKLANRAIELDTGNRPREAYMEYLRSIHYISQVLLEDVENTTEAGETVPPETSKMLKLAEQCLERAQSTATKLGKICLKPAVPVAPPIPLPTTRHRRVCSDEGGKLSPFLPPEIFQKLQVAEPQNSKKELSPLEKASLQNQKLRATYEARMARLDPSQAVQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWRTKLKRSPGDLSVVTSLVSHLLSLPDHPISQLLKKLQCAVYSALYPIVSRAAISAVPAPGCCSLPPEANGLLAPGSRRLRSSQSLYCMLSPSEPSAAPRPLDGPPSMPSIPTLHSGPLDREADSSPAGPSSPLIDASSHLPDKDSSFEDLEQFLAISEPQTPGSKREPLLECLKSTVKDIHNAIDRLLSLTLLAFEGLNTATSKDRCLACIEEPFFSPLWPLLLALYRSVHRTQEAAVSRSMELYRNAPPTALGIPAKLLPRVSESQASTYPYCTAAQELGLLVLESCPQKKLECIVRTLRVICICAEDYCRAQEARTEAGSQPPAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLSRGRLDKKW", "length": 651, "header": "tr|A0A8C2MRJ5-1|A0A8C2MRJ5_CRIGR Isoform 1 of VPS9 domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vps9d1 PE=4 SV=1 CANONICAL=A0A8C2MRJ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MRJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5/entry", "sequence": { "sequence": "MAAAAGDGAAKPLQSAMKLANRAIELDTGNRPREAYMEYLRSIHYISQVLLEDVENTTEAGETVPPETSKMLKLAEQCLERAQSTATKLGKICLKPAVPVAPPIPLPTTRHRRVCSDEGGKLSPFLPPEIFQKLQVAEPQNSKKELSPLEKASLQNQKLRATYEARMARLDPSQAVQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWRTKLKRSPGDLSVVTSLVSHLLSLPDHPISQLLKKLQCAVYSALYPIVSRAAISAVPAPGCCSLPPEANGLLAPGSRRLRSSQSLYCMLSPSEPSAAPRPLDGPPSMPSIPTLHSGPLDREADSSPAGPSSPLIDASSHLPDKDSSFEDLEQFLAISEPQTPGSKREPLLECLKSTVKDIHNAIDRLLSLTLLAFEGLNTATSKDRCLACIEEPFFSPLWPLLLALYRSVHRTQEAAVSRSMELYRNAPPTALGIPAKLLPRVSESQASTYPYCTAAQELGLLVLESCPQKKLECIVRTLRVICICAEDYCRAQEARTEAGSQPPAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLSRGRLDKKW", "length": 651, "header": "tr|A0A8C2MRJ5-1|A0A8C2MRJ5_CRIGR Isoform 1 of VPS9 domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Vps9d1 PE=4 SV=1 CANONICAL=A0A8C2MRJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FS14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS14/entry", "sequence": { "sequence": "MAAAAGDGAAKPLQSAMKLANRAIELDTGNRPREAYMEYLRSIHYISQVLLEDVENTTEAGETVPPETSKMLKLAEQCLERAQSTATKLGKICLKPAVPVAPPIPLPTTRHRRVCSDEGGKLSPFLPPEIFQKLQVAEPQNSKKELSPLEKASLQNQKLRATYEARMARLDPSQAVQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWRTKLKRSPGDLSVVTSLVSHLLSLPDHPISQLLKKLQCAVYSALYPIVSRAAISAVPAPGCCSLPPEANGLLAPGSRRLRSSQSLYCMLSPSEPSAAPRPLDGPPSMPSIPTLHSGPLDREADSSPAGPSSPLIDASSHLPDKDSSFEDLEQFLAISEPQTPGSKREPLLECLKSTVKDIHNAIDRLLSLTLLAFEGLNTATSKDRCLACIEEPFFSPLWPLLLALYRSVHRTQEAAVSRSMELYRNAPPTALGIPAKLLPRVSESQASTYPYCTAAQELGLLVLESCPQKKLECIVRTLRVICICAEDYCRAQEARTEAGSQPPAAAM", "length": 584, "header": "tr|A0A9J7FS14-1|A0A9J7FS14_CRIGR Computationally mapped isoform of VPS9 domain-containing protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Vps9d1 PE=4 SV=1 CANONICAL=A0A8C2MRJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU21/entry", "sequence": { "sequence": "MAAAAGDGAAKPLQSAMKLANRAIELDTGNRPREAYMEYLRSIHYISQVLLEDVENTTAGETVPPETSKMLKLAEQCLERAQSTATKLGKICLKPAVPVAPPIPLPTTRHRRVCSDEGGKLSPFLPPEIFQKLQVAEPQNSKKELSPLEKASLQNQKLRATYEARMARLDPSQAVQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWRTKLKRSPGDLSVVTSLVSHLLSLPDHPISQLLKKLQCAVYSALYPIVSRAAISAVPAPGCCSLPPEANGLLAPGSRRLRSSQSLYCMLSPSEPSAAPRPLDGPPSMPSIPTLHSGPLDREADSSPAGPSSPLIDASSHLPDKDSSFEDLEQFLAISEPQTPGSKREPLLECLKSTVKDIHNAIDRLLSLTLLAFEGLNTATSKDRCLACIEEPFFSPLWPLLLALYRSVHRTQEAAVSRSMELYRNAPPTALGIPAKLLPRVSESQASTYPYCTAAQELGLLVLESCPQKKLECIVRTLRVICICAEDYCRAQEARTEAGSQPPAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELLSRGRLDKKW", "length": 650, "header": "tr|A0A9J7FU21-1|A0A9J7FU21_CRIGR Computationally mapped isoform of VPS9 domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Vps9d1 PE=4 SV=1 CANONICAL=A0A8C2MRJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FW03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW03/entry", "sequence": { "sequence": "MAAAAGDGAAKPLQSAMKLANRAIELDTGNRPREAYMEYLRSIHYISQVLLEDVENTTEAGETVPPETSKMLKLAEQCLERAQSTATKLGKICLKPAVPVAPPIPLPTTRHRRVCSDEGGKLSPFLPPEIFQKLQVAEPQNSKKELSPLEKASLQNQKLRATYEARMARLDPSQAVQKTSLTLSLQRQMMENLVIAKAREETLQRKMEERRLRLQEAANRRFCSQVALTPEEREQRALYAAILEYEQDHDWPKHWRTKLKRSPGDLSVVTSLVSHLLSLPDHPISQLLKKLQCAVYSALYPIVSRAAISAVPAPGCCSLPPEANGLLAPGSRRLRSSQSLYCMLSPSEPSAAPRPLDGPPSMPSIPTLHSGPLDREADSSPAGPSSPLIDASSHLPDKDSSFEDLEQFLAISEPQTPGSKREPLLECLKSTVKDIHNAIDRLLSLTLLAFEGLNTATSKDRCLACIEEPFFSPLWPLLLALYRSVHRTQEAAVSRSMELYRNAPPTALGIPAKLLPRVSESQASTYPYCTAAQELGLLVLESCPQKKLECIGAGI", "length": 555, "header": "tr|A0A9J7FW03-1|A0A9J7FW03_CRIGR Computationally mapped isoform of VPS9 domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Vps9d1 PE=4 SV=1 CANONICAL=A0A8C2MRJ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MRJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRJ5" }, { "id": "PS51205", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51205" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VPS9", "eco_id": "ECO_0000259", "start_pos": 487, "end_pos": 648, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 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"MADVSVDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNIQRSRLVQHDLQVAKQLQEEDLRAQAQLQKLYKDLEQHDCEIAQEIQEKLTIEAERRRIQEKKDEDIARLLQEKELQEEKKRKKHIPEPVGGRAFGDSYYHEDGDQPRSRRARELGSGYSRFYRLQNDGKTIKQKKEKPRHLLENLEDLEEPCSSERSLPSSNSGRGRDGAHPSSDQHERKQAGQERLSKLPLPKISGEVFLSSESDDWEANSSSRTRSREKQSRHHGRLSPKSLQKTGFPSNEVLCGRDRGQGHHRERRRKPGTPSFSDDEDLQYHRDAGTKPRGIKEAVGTPARVTHRDQEWYDAEIARKLQEEELLATHVDIRAAQVAQDEEIARLLMAEEKKAYKKAKEREKSSLDKRKHDPECKSKAKSTHSKSRENEEAHRSKIDRPSRPPPPTVMDPEDLDHTHFANHHSATRHFSKSESSHKGFYNKQ", "length": 481, "header": "tr|A0A8C2MRK4-1|A0A8C2MRK4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 50 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc50 PE=4 SV=1 CANONICAL=A0A8C2MRK4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MRK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRK4/entry", "sequence": { "sequence": "MADVSVDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNIQRSRLVQHDLQVAKQLQEEDLRAQAQLQKLYKDLEQHDCEIAQEIQEKLTIEAERRRIQEKKDEDIARLLQEKELQEEKKRKKHIPEPVGGRAFGDSYYHEDGDQPRSRRARELGSGYSRFYRLQNDGKTIKQKKEKPRHLLENLEDLEEPCSSERSLPSSNSGRGRDGAHPSSDQHERKQAGQERLSKLPLPKISGEVFLSSESDDWEANSSSRTRSREKQSRHHGRLSPKSLQKTGFPSNEVLCGRDRGQGHHRERRRKPGTPSFSDDEDLQYHRDAGTKPRGIKEAVGTPARVTHRDQEWYDAEIARKLQEEELLATHVDIRAAQVAQDEEIARLLMAEEKKAYKKAKEREKSSLDKRKHDPECKSKAKSTHSKSRENEEAHRSKIDRPSRPPPPTVMDPEDLDHTHFANHHSATRHFSKSESSHKGFYNKQ", "length": 481, "header": "tr|A0A8C2MRK4-1|A0A8C2MRK4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 50 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc50 PE=4 SV=1 CANONICAL=A0A8C2MRK4-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MRM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM9/entry", "sequence": { "sequence": "MADVSVDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNIQRSRLVQHDLQVAKQLQEEDLRAQAQLQKLYKDLEQHDCEIAQEIQEKLTIEAERRRIQEKKDEDIARLLQEKELQEEKKRKKHIPEPVGGRAFGDSYYHEDGGTKPRGIKEAVGTPARVTHRDQEWYDAEIARKLQEEELLATHVDIRAAQVAQDEEIARLLMAEEKKAYKKAKEREKSSLDKRKHDPECKSKAKSTHSKSRENEEAHRSKIDRPSRPPPPTVMDPEDLDHTHFANHHSATRHFSKSESSHKGFYNKQ", "length": 305, "header": "tr|A0A8C2MRM9-1|A0A8C2MRM9_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 50 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccdc50 PE=4 SV=1 CANONICAL=A0A8C2MRK4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 445, "start_aa": "Thr", "end_pos": 445, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr445", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A8C2MRK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRK4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MRK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRK4" }, { "id": "PF15295", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15295" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coiled-coil", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 128, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 445 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 257, "end_pos": 259 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MRM0-1", "uniprot_ac": "A0A8C2MRM0", "uniprot_id": "A0A8C2MRM0_CRIGR", "mass": { "chemical_mass": 52998.0, "monoisotopic_mass": 52998.0 }, "refseq": { "ac": "XP_027250905", "name": "coiled-coil domain-containing protein 6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250905" }, "gene_names": [ { "name": "Ccdc6", "type": "recommended", "evidence": [ { "id": "A0A8C2MRM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM0" } ] }, { "name": "Ccdc6", "type": "synonym", "evidence": [ { "id": "XP_027250905", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250905" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 6 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MRM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM0/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027250905", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250905" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250905", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250905" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MRM0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM0", "locus": {} } ], "crossref": [ { "id": "100761094", "url": "https://www.ncbi.nlm.nih.gov/gene/100761094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761094", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MRM0", "url": "https://www.orthodb.org/?gene=A0A8C2MRM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15276", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15276", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15276:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15276:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250905", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250905", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MRM0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MRM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADSASESDTDAAGGGPAAMQSSCSATSGGSGGGGGGKSGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKIQALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKKLENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGASHGITRPSPRRSSSPDKFKRPTPPPSPNTQSPVQPPPPPPPPPMQPSVPSAATSSQPAPSSQQHSVHPSSQP", "length": 470, "header": "tr|A0A8C2MRM0-1|A0A8C2MRM0_CRIGR Isoform 1 of Coiled-coil domain-containing protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc6 PE=4 SV=1 CANONICAL=A0A8C2MRM0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MRM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MRM0/entry", "sequence": { "sequence": "MADSASESDTDAAGGGPAAMQSSCSATSGGSGGGGGGKSGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKIQALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKKLENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRAGMSYYNSPGLHVQHMGASHGITRPSPRRSSSPDKFKRPTPPPSPNTQSPVQPPPPPPPPPMQPSVPSAATSSQPAPSSQQHSVHPSSQP", "length": 470, "header": "tr|A0A8C2MRM0-1|A0A8C2MRM0_CRIGR Isoform 1 of Coiled-coil domain-containing protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc6 PE=4 SV=1 CANONICAL=A0A8C2MRM0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A8C2MS45", "uniprot_id": "A0A8C2MS45_CRIGR", "mass": { "chemical_mass": 142148.0, "monoisotopic_mass": 142148.0 }, "refseq": { "ac": "XP_003495804", "name": "maestro heat-like repeat-containing protein family member 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495804" }, "gene_names": [ { "name": "Mroh7", "type": "recommended", "evidence": [ { "id": "A0A8C2MS45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS45" } ] }, { "name": "Mroh7", "type": "synonym", "evidence": [ { "id": "XP_003495804", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495804" } ] } ], "protein_names": [ { "name": "Maestro heat-like repeat-containing protein family member 7", "type": "synonym", "evidence": [ { "id": "A0A8C2MS45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS45/entry#names_and_taxonomy" } ] }, { "name": "maestro heat-like repeat-containing protein family member 7", "type": "synonym", 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This record is derived from a genomic sequence (NW_003613599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495804", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495804" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS45", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS45" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mroh7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS45", "locus": {} } ], "crossref": [ { "id": "100752079", "url": "https://www.ncbi.nlm.nih.gov/gene/100752079", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] 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"categories": [ "Protein Classification" ] }, { "id": "PTHR23120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23120:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495804", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495804", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": 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"length": 1280, "header": "tr|A0A8C2MS45-1|A0A8C2MS45_CRIGR Isoform 1 of Maestro heat-like repeat-containing protein family member 7 OS=Cricetulus griseus OX=10029 GN=Mroh7 PE=4 SV=1 CANONICAL=A0A8C2MS45-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 38, "start_aa": "Thr", "end_pos": 38, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr38", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", 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:: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615174.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007650345", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650345" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS60" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hsf2bp", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS60", "locus": {} } ], "crossref": [ { "id": "100751781", "url": "https://www.ncbi.nlm.nih.gov/gene/100751781", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MATTRGEAAALGEGSGTEEAFRHIESKEEFVKVRKKDLERLTTEVMQLRDFLPRLLNADLMESFQKLKTVEKNLERKEQELEQLRLDCEHFKARLETVQADSGREKKEKLALRQQLNEAKQQLLQQAEYCTQMGAVTCTLLWGVSRSEEVVKAILGGDKALKFFNITGQTMESYVKSLDGDVKEVDSDENQFVFALAGIVTNVAAIACGREFLVNSSRVLLDTMLQLLGDLKPGQCTKLKVSRCRSVPSCLAAHPVCGSRTRGLLQGGPGVPEHFTPGAHPGHVQEPQLPPADCCSGAPGRPPCPGLQCLSVLDHQGLGENASAPSPPQALCLCVHN", "length": 337, "header": "tr|A0A9J7J5P3-1|A0A9J7J5P3_CRIGR Computationally mapped isoform of Heat shock factor 2-binding protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Hsf2bp PE=4 SV=1 CANONICAL=A0A8C2MS60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEM9/entry", "sequence": { "sequence": "MATTRGEAAALGEGSGTEEAFRHIESKEEFVKVRKKDLERLTTEVMQLRDFLPRLLNADLMESFQKLKTVEKNLERKEQELEQLRLDCEHFKARLETVQADSGREKKEKLALRQQLNEAKQQLLQQAEYCTQMGAVTCTLLWGVSRSEEVVKAILGGDKALKFFNITGQTMESYVKSLDGDVKEVDSDENQFVFALAGIVTNVAAIACGREFLVNSSRVLLDTMLQLLGDLKPGQCTKLKVLMLMSLYNVSINSKGLKYISESPGFIPLLWWLLSG", "length": 276, "header": "tr|A0A9J7KEM9-1|A0A9J7KEM9_CRIGR Computationally mapped isoform of Heat shock factor 2-binding protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Hsf2bp PE=4 SV=1 CANONICAL=A0A8C2MS60-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS60" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS60" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751781", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751781", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3V646-1", "protein_name": "Heat shock transcription factor 2 binding protein", "gene_name": "Hsf2bp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MAATVGDGSGTEEACRNMESKEEFVKVRKKDLERLTTEVMQIRDFLPRILNGELLESFQKLKMVEKNLERKEQELEQLIMDREHFKARLETAQADSGREKKEKLALRQQLNEAKQQLLQQAEYCTQMGAVTCTLLWGVSSSEEVVKTILGGDKALKFFNITGQTMESFVKSLDGDVKEVDSDENQFVFALAGIVTNVAAIACGREFLVNSSRVLLDTMLQLLGDLKPGQCTKLKVLMLMSLYNVSINSKGLKYITESPGFIPLLWWLLSDPDAEVCLHTLRLIQSVVLEPDVFSKVASELQSSLPLQRILAMSKSRNSHLQSAAQELLEDLRALDCNV", "length": 338 }, "evidence": [ { "id": "A0A8C2MS60", "url": "https://omabrowser.org/oma/group/A0A8C2MS60/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS60" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 }, { "start_pos": 215, "end_pos": 217 }, { "start_pos": 249, "end_pos": 251 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"uniprot_ac": "A0A8C2MS62", "uniprot_id": "A0A8C2MS62_CRIGR", "mass": { "chemical_mass": 59142.0, "monoisotopic_mass": 59142.0 }, "refseq": { "ac": "XP_027283623", "name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283623" }, "gene_names": [ { "name": "Smarcd2", "type": "recommended", "evidence": [ { "id": "A0A8C2MS62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62" } ] }, { "name": "Smarcd2", "type": "synonym", "evidence": [ { "id": "XP_027283623", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283623" } ] } ], "protein_names": [ { "name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027283623", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283623" }, { "id": "A0A8C2MS62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283623", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283623" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS62", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smarcd2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62", "locus": {} } ], "crossref": [ { "id": "cd17675", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17675", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770817", "url": "https://www.ncbi.nlm.nih.gov/gene/100770817", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030090", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030090", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770817", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770817", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MS62", "url": "https://www.orthodb.org/?gene=A0A8C2MS62", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13844", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13844", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283623", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283623", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MS62", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MS62-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPNPALRGPGPSGGMGVPAAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKTDGDNAGTAGTPGGTPAADKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT", "length": 531, "header": "tr|A0A8C2MS62-1|A0A8C2MS62_CRIGR Isoform 1 of SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Smarcd2 PE=3 SV=1 CANONICAL=A0A8C2MS62-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MS62-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62/entry", "sequence": { "sequence": "MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPNPALRGPGPSGGMGVPAAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKTDGDNAGTAGTPGGTPAADKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT", "length": 531, "header": "tr|A0A8C2MS62-1|A0A8C2MS62_CRIGR Isoform 1 of SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Smarcd2 PE=3 SV=1 CANONICAL=A0A8C2MS62-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], 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[], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS62", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS62", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770817", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770817", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS62", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS62", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MS62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS62" }, { "id": "PS51925", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51925" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DM2", "eco_id": "ECO_0000259", "start_pos": 306, "end_pos": 383, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 217, 221 ], "snv_sites": [], "glycation_sites": [], 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300567", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300567" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSD1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSD1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tprg1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSD1", "locus": {} } ], "crossref": [ { "id": "100773185", "url": "https://www.ncbi.nlm.nih.gov/gene/100773185", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773185", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773185", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FIMLNCE", "url": "https://omabrowser.org/oma/group/FIMLNCE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MSD1", "url": "https://www.orthodb.org/?gene=A0A8C2MSD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31108", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31108", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31108:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31108:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300567", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300567", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MSD1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MSD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTIGSFEGFQPVSLKQEEDDQPSETDHLSKNDGDLGKKPGPRQISRQPSVTKSTLYPNPYHQPYASRKYFATRPGAMETAVEDLSGHITQTSGETVQGYWLLTEIDHWNNEKEKILLLTDKTLLICKYDFIMLSCVQMQQIPLSAICRICLGKFIFPGISLDKRPGEGLRICWGSTEGQSLLSRWNPWSTEVPYATFTEHPMKYTSEKFLEICKLSGFTSKLIPAIKSAHKNSAGSGRGEELMVLTQPILIETYTGLMSFIGNRNKLGYSLARGSVGF", "length": 279, "header": "tr|A0A8C2MSD1-1|A0A8C2MSD1_CRIGR Isoform 1 of Tumor protein p63-regulated gene 1 protein OS=Cricetulus griseus OX=10029 GN=Tprg1 PE=3 SV=1 CANONICAL=A0A8C2MSD1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MSD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSD1/entry", "sequence": { "sequence": "MSTIGSFEGFQPVSLKQEEDDQPSETDHLSKNDGDLGKKPGPRQISRQPSVTKSTLYPNPYHQPYASRKYFATRPGAMETAVEDLSGHITQTSGETVQGYWLLTEIDHWNNEKEKILLLTDKTLLICKYDFIMLSCVQMQQIPLSAICRICLGKFIFPGISLDKRPGEGLRICWGSTEGQSLLSRWNPWSTEVPYATFTEHPMKYTSEKFLEICKLSGFTSKLIPAIKSAHKNSAGSGRGEELMVLTQPILIETYTGLMSFIGNRNKLGYSLARGSVGF", "length": 279, "header": "tr|A0A8C2MSD1-1|A0A8C2MSD1_CRIGR Isoform 1 of Tumor protein p63-regulated gene 1 protein OS=Cricetulus griseus OX=10029 GN=Tprg1 PE=3 SV=1 CANONICAL=A0A8C2MSD1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MSE7-1", "uniprot_ac": "A0A8C2MSE7", "uniprot_id": "A0A8C2MSE7_CRIGR", "mass": { "chemical_mass": 60436.0, "monoisotopic_mass": 60436.0 }, "refseq": { "ac": "XP_003495480", "name": "mucin-20", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495480" }, "gene_names": [ { "name": "Muc20", "type": "recommended", "evidence": [ { "id": "A0A8C2MSE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSE7" } ] }, { "name": "Muc20", "type": "synonym", "evidence": [ { "id": "XP_003495480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495480" } ] } ], "protein_names": [ { "name": "Mucin-20", "type": "synonym", "evidence": [ { "id": "A0A8C2MSE7", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_003613591.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495480" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSE7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSE7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Muc20", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSE7", "locus": {} } ], "crossref": [ { "id": "100763626", "url": "https://www.ncbi.nlm.nih.gov/gene/100763626", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR034551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763626", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763626", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MSE7", "url": "https://www.orthodb.org/?gene=A0A8C2MSE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37358", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37358", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37358:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37358:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003495480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495480", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MSE7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MSE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSE7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCVWGLAVPLLFFCWKAGVTASSAGLSISSSAPLVTANNTEVPAFTQRNRPSSAVAFQTTALTQYDPLDTQTLNAETASNTLIATSTSSEVSSRDTQTISPITETRKTTSPTVSTLETQTTSLEASSLNTQTTSPAASTLDTQTTSPAKEALKNQTIFPVELTQKTQTISSVTEATTLEIRMPSNFMAVHPIPTDTSDAWATSGSPRTGMITVKPGTVSDPIEVIFDTLCTDDSSEEARKITLDLLTLAHTSTEAESLSSESSSSSDSSAGVLTSSQALGPDIATPAKDSVAFSITHIKLTTCITEIETSISGTSDTNHSPTGATAALSTSETLTLPQSPEAKPFSPKITSSPGTLPTASTSALATTLEGTLPVSHVTERETTVAQIPTSGGTLVTVSASPLKETSAFSTETQSHAEVSGTITVSSVAGSTMGEATSFAGSSTSDSSPSAGATTKSSFTSDTLTTDDITSSSFLTGNSTLPFVYSTTASTSKKPNVTSAKTTASPKTTAKHPTTTPAAAWTRRTTKHDPGEDGGFLLVRLSVASPQDLTEPKVSEKLIHQLSCELHTHVPLVQVSLLRVRRS", "length": 583, "header": "tr|A0A8C2MSE7-1|A0A8C2MSE7_CRIGR Isoform 1 of Mucin-20 OS=Cricetulus griseus OX=10029 GN=Muc20 PE=4 SV=1 CANONICAL=A0A8C2MSE7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MSE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSE7/entry", "sequence": { "sequence": "MGCVWGLAVPLLFFCWKAGVTASSAGLSISSSAPLVTANNTEVPAFTQRNRPSSAVAFQTTALTQYDPLDTQTLNAETASNTLIATSTSSEVSSRDTQTISPITETRKTTSPTVSTLETQTTSLEASSLNTQTTSPAASTLDTQTTSPAKEALKNQTIFPVELTQKTQTISSVTEATTLEIRMPSNFMAVHPIPTDTSDAWATSGSPRTGMITVKPGTVSDPIEVIFDTLCTDDSSEEARKITLDLLTLAHTSTEAESLSSESSSSSDSSAGVLTSSQALGPDIATPAKDSVAFSITHIKLTTCITEIETSISGTSDTNHSPTGATAALSTSETLTLPQSPEAKPFSPKITSSPGTLPTASTSALATTLEGTLPVSHVTERETTVAQIPTSGGTLVTVSASPLKETSAFSTETQSHAEVSGTITVSSVAGSTMGEATSFAGSSTSDSSPSAGATTKSSFTSDTLTTDDITSSSFLTGNSTLPFVYSTTASTSKKPNVTSAKTTASPKTTAKHPTTTPAAAWTRRTTKHDPGEDGGFLLVRLSVASPQDLTEPKVSEKLIHQLSCELHTHVPLVQVSLLRVRRS", "length": 583, "header": "tr|A0A8C2MSE7-1|A0A8C2MSE7_CRIGR Isoform 1 of Mucin-20 OS=Cricetulus griseus OX=10029 GN=Muc20 PE=4 SV=1 CANONICAL=A0A8C2MSE7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MSG4-1", "uniprot_ac": "A0A8C2MSG4", "uniprot_id": "A0A8C2MSG4_CRIGR", "mass": { "chemical_mass": 69105.0, "monoisotopic_mass": 69105.0 }, "refseq": { "ac": "XP_003496149", "name": "protein DENND6A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496149" }, "gene_names": [ { "name": "Dennd6a", "type": "recommended", "evidence": [ { "id": "A0A8C2MSG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" } ] }, { "name": "Dennd6a", "type": "synonym", "evidence": [ { "id": "XP_003496149", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496149" } ] } ], "protein_names": [ { "name": "Protein DENND6A isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MSG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4/entry#names_and_taxonomy" } ] }, { "name": "protein DENND6A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003496149", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496149" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613611.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496149", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496149" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dennd6a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4", "locus": {} } ], "crossref": [ { "id": "100769342", "url": "https://www.ncbi.nlm.nih.gov/gene/100769342", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024224", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024224", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769342", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769342", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EANLEHW", "url": "https://omabrowser.org/oma/group/EANLEHW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MSG4", "url": "https://www.orthodb.org/?gene=A0A8C2MSG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EX12", "url": "https://www.orthodb.org/?gene=A0A9J7EX12", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09794", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09794", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496149", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496149", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MSG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MSG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EX12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EX12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX12-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALRGPAVFGPGSRGSLDEAGAEGREAAALEAAGVALEDDDEEDGRRGLLRWDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVLMKVRIPTCHDKPGTTQMVQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADRENLPVKPDTVAKLRTHIDAIILALPEDLQGILLKTGMT", "length": 605, "header": "tr|A0A8C2MSG4-1|A0A8C2MSG4_CRIGR Isoform 1 of Protein DENND6A isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd6a PE=3 SV=1 CANONICAL=A0A8C2MSG4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MSG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4/entry", "sequence": { 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769342", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769342", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NY14-1", "protein_name": "DENN domain containing 6A", "gene_name": "DENND6A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALWERGAGGAAEAGEDATEEPERGLPLLPWDRFSAWLHCVCVVGFDLELGQAVEVIYPPHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRRSSGRKASLCCFLDHLDRDLPVYLKKDPAYYYGYVYFRQVRDKSLKRGYFQKSLVLISKLPYIHLFRTVLKQIAPEYFEKSEAFLEAVCSDVDRWPPPVPGEVLHLPIMGVVMKLRIPTYRDKPGTTPVVQNMHQADAQISMTLPTVHEVDLFRCFCPVFFHIQMLWELVLLGEPLVVMAPSPAESSETVLALVSCISPLKYCSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDMKLPGDVPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNKDEEIVKQLQKGVQQKRPTEAQSAILRRYFLELTESFIIPLERYVASLMPLQKCISPWKSPPQLRHFSQDDFMKTLEKAGPQLTSGLKGDWIGLYRHFLKSPNFDGWFRSRQKEMTQKLEALHLEALCNENLVFWSQKHTEVETVDLVLKLKNKLLQADREHLPVKTDTLKKLQTHIRDIILALPDDLQDILLKTGTA", "length": 584 }, "evidence": [ { "id": "A0A8C2MSG4", "url": "https://omabrowser.org/oma/group/A0A8C2MSG4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A544-1", "protein_name": "DENN domain containing 6A", "gene_name": "Dennd6a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRDQAVFGPGSRGSLDEAGAEGREAAALAAAGVALEDDEEDDGRRGLLRWDGFSAWLHCVCVVGFDLELGQAVEVIYPQHCKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDEFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGLVMKVRIPTCHDKPGTTQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRQFLKSPNFDGWFKTRRKEMTHKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADRENLPVKPDTVEKLRTHIDAIILALPEDLQGILLKTGMT", "length": 602 }, "evidence": [ { "id": "A0A8C2MSG4", "url": "https://omabrowser.org/oma/group/A0A8C2MSG4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54VA9-1", "protein_name": "Protein DENND6 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIIGGTDPLSMIFKEEEIKKQQILLEKEEKEKQEQQQKKLNKDNIFKLEEEGKKLELSTKVHIQHPNISTTSDNNSLLDPSNLTLNGKKKKWINSFCIINFDLEIGQVLDYSFPQVNFKEEESTNLCFLSFPDSNSHLQGDIIYSFKLKETSSLGNGQCNFQYGYVFFRQEKDSSISRGYLQKSVVLLSDESFVGLFKKVMEIVGPLYFDHGNTLLEVAYQNIMNWPELKLGQTYELPILGYILTFHVPHTRGTPHIIDPVVKQHQLGGGSGGGLSSSPSSSSGGGNIPTSNTTGVSPSIWSEMKLVSNLKSIDIYGCFKSFTTKLWMLWELVLLGHPLLVISPNPPMCSDSVLALVSLISPLHYCGDYRPYFTIHDTDFHKYTSFSHLSGTRPDDSNNNNNQDDSEYNNNNNNNGIPPSILGVTNPFFLKALGNWPNILTIGTTQQRLGGFKKIKSSLPNIMSKDLLTRHVLDNKEKILSEYKPFISPDKSVLKKITESADDDIINEVLRTHFLQLTQKFLIPLERYFSLLLPLAKTISIFQRPPRLKPFIKEECLNKIMETDERFIIDNKSKEIELYKQFLDCVNFKQWLDDKRAQAIKHLNILYRKAILDADIHTLLRGKPISTATDLLKRVEDQLILEENLFQTSKEIKDKFKSHIEIIRQYKNNCDNNNENNNNNILLTSPIKSTSLSSIALPPSSTTVTTKTTTTTK", "length": 715 }, "evidence": [ { "id": "A0A8C2MSG4", "url": "https://omabrowser.org/oma/group/A0A8C2MSG4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BH65-1", "protein_name": "Protein DENND6A", "gene_name": "Dennd6a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALPGPAVFGPGSRGSLDEAGAEGREAAALAAAGVALEDEEEDDGRRGLLRWDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDEFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGLVMKVRIPTCHDKPGTTQMVQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGIQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRQFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQAGRESLPVKPDTVEKLRTHIDAIILALPDDLQGILLKTGMT", "length": 605 }, "evidence": [ { "id": "A0A8C2MSG4", "url": "https://omabrowser.org/oma/group/A0A8C2MSG4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWF6-1", "protein_name": "Protein DENND6A", "gene_name": "DENND6A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALRGPAGLGPGSRRPLDEAVAGAEGREAPALVAAGGAPEDDEEDDGRGRGLLRWDSFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVVMKVRIPTCHDKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADREHLPVKPDTMEKLRTHIDAIILALPEDLQGILLKTGMT", "length": 608 }, "evidence": [ { "id": "A0A8C2MSG4", "url": "https://omabrowser.org/oma/group/A0A8C2MSG4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9C9B4-1", "protein_name": "Polarity axis stabilization protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSRSPSFSVKPELSIKPDPESLKRWIHAFCIMRFDLEQGQLLEECYPPDCLSQEEEIEVSFNSFPDSVSQHHNRSSIHDCIFFFRFRRPKKNTEERDGSERYLYGYVFNRQRHDERLKRGGEQKSVVILSHTPYSSVFRPLLQIIGPLYFDVGNKAIEHIAGYVSMWPAPVPGKLMELPIGNAMLKVNLPPAHSLPLENGILYEESASSMAPLLPTNQSVPQGLFHDADLFGIYRGLLLQLWTLWELLLIGEPILIIAPTPPQCSEAVACLVSLVAPLFCSVDFRPYFTIHDPGFARLNSLREGDTFPPMVLGVTNIFFLKALRNIPHVVSVGTPAPNSNRVAFTSRSAGKLSVKPEGLGVQQLSLRRFSPTNLLNAVKLRRDGPLCLMTEHKEAVWTTYSAVTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFQVNAPSDGSSPYVTPPALPSFGADEFLSNLSGRGVGKFLSKRMKSNWPDLYRRFLRGPNFSPWFQRRRAVAEQEQRRLWRLARMKTDMRQITSQMNELEAVDSFNAIEKHISEEVKSLESGGGADSEGTFQKLKKDLQAVFSVLPKDMQQLLLLNPQRASLLQDPSELQ", "length": 623 }, "evidence": [ { "id": "A0A8C2MSG4", "url": "https://omabrowser.org/oma/group/A0A8C2MSG4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9W4D1-1", "protein_name": "UDENN domain-containing protein", "gene_name": "BEST:LD39762", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSADARIKQMAPSLDTTEREREHQNVDATNSNSEPSASDWVNFSQWMHCFCVVTFDLNLGQALEHVYPPAFMPSDQEVSNICYMAFPDSNSGCMGDTKFHMRLRCTTRRDSLPGYNAECSPALRQDGSHYWGFVYFRQKRDANLPRGYFQKSFIIITRLPFFNLYYDILSQLAPRYFEEGTDVLRLASEQINRQWPGLRVGKPLQLPLLDCSYQICIPRTSSSRKSTADGGIAGGAVESPPAMAACPAAKVLASVNEIELFRSLDFVMEQLYTLWELVITAEPIVVVGTSPADCSHMVQTLLAMIAPLEYCAEARPYFTIHDSEFREFTQECSSKTTLPACILGVTNPFFVKLLKDWPHMLRLVDNQKNMQQQQHLLLGQKHARNIASATSFSSSTELGGRIALKSNTNLNGSSSSSNGSGDASSAGLHSKYRPYLKKDKALIKKVLLGMKTKRPEHVQTALIRRHLLELTQSFMIPLERYMASLMPLQKDISPFKSAPNANSFKLDDFLGTLETAGPQLTSPLKGDWKGLYRRFFRSPNFRGWYGARHRELQLTLQDLQLQALSVANLEHWAHDKQEVEIIDMILKLKQKLNLYGDKATQLEGNNGSTQQQIRAQIECMKGLLPPDLKNVVNL", "length": 634 }, "evidence": [ { "id": "A0A8C2MSG4", "url": "https://omabrowser.org/oma/group/A0A8C2MSG4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of cell-cell adhesion mediated by cadherin", "id": "GO:2000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000049", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MSG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSG4" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 525, "start_aa": "His", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MSM6-1", "uniprot_ac": "A0A8C2MSM6", "uniprot_id": "A0A8C2MSM6_CRIGR", "mass": { "chemical_mass": 112147.0, "monoisotopic_mass": 112147.0 }, "refseq": { "ac": "XP_007638262", "name": "KAT8 regulatory NSL complex subunit 1-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638262" }, "gene_names": [ { "name": "Kansl1l", "type": "recommended", "evidence": [ { "id": "A0A8C2MSM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6" } ] }, { "name": "Kansl1l", "type": "synonym", "evidence": [ { "id": "XP_007638262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638262" } ] } ], "protein_names": [ { "name": "KAT8 regulatory NSL complex subunit 1-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007638262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638262" }, { "id": "A0A8C2MSM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613727.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638262", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638262" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kansl1l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6", "locus": {} } ], "crossref": [ { "id": "100761258", "url": "https://www.ncbi.nlm.nih.gov/gene/100761258", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761258", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761258", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WRVVDIQ", "url": "https://omabrowser.org/oma/group/WRVVDIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MSM6", "url": "https://www.orthodb.org/?gene=A0A8C2MSM6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22443", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22443", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22443:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22443:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15275", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15275", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007638262", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638262", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MSM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MSM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MT75", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MT75-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7C5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7A6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPALKEATTKGICFSSLPSAMESDKMLCVESPRTVDEKLTAGDTLSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKGVESNCCKLKNVLCNGSSIQLSKICHSHSEKEFIKKELSDTTSQCMKDIQIVLDSNLTKDTNVDKIHLQNCKWYPKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDMPISSSAAEKEEEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVQHYGQQMKFSMKHQLPTMKLFHEPTTVLGNSLLEHSEIKPEVNILASENKFWDDTNNGFAQCTAAEIQRFALSATGLLSHVEVGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRHIRASKGIVILEECPLPKDILKKQIQFSNQAVSLNTSVNSQVPQRGEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKEAFLNATQIPYMGSPLSWDNWEQSSNSQLLREHVSKLDSSFHPVLSLPSEMPLHLHFETLFKKTDVKGELAENPFVGDCIIAPPPVQGTSLNQWRNGYSPICKPQIRSQSSAQLLQGRKKRHLSETALAGERTRFEDFAFQRTEPGSHCDFTAVSNANVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLSKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNNRAYSKNAEAQDLVLKENPGELSSAQQCVAESPLELLADNTSLYAQDSLSLNDSQEIKSLRWERRAFPLKDEDTAALLCQDERKDQTEGASTAFHDEVFCSTTPENGHPPKMQLDGMEEYKTFAIGVTNVKRNR", "length": 990, "header": "tr|A0A8C2MSM6-1|A0A8C2MSM6_CRIGR Isoform 1 of KAT8 regulatory NSL complex subunit 1-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Kansl1l PE=4 SV=1 CANONICAL=A0A8C2MSM6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MSM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6/entry", "sequence": { "sequence": "MTPALKEATTKGICFSSLPSAMESDKMLCVESPRTVDEKLTAGDTLSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKGVESNCCKLKNVLCNGSSIQLSKICHSHSEKEFIKKELSDTTSQCMKDIQIVLDSNLTKDTNVDKIHLQNCKWYPKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDMPISSSAAEKEEEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVQHYGQQMKFSMKHQLPTMKLFHEPTTVLGNSLLEHSEIKPEVNILASENKFWDDTNNGFAQCTAAEIQRFALSATGLLSHVEVGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRHIRASKGIVILEECPLPKDILKKQIQFSNQAVSLNTSVNSQVPQRGEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKEAFLNATQIPYMGSPLSWDNWEQSSNSQLLREHVSKLDSSFHPVLSLPSEMPLHLHFETLFKKTDVKGELAENPFVGDCIIAPPPVQGTSLNQWRNGYSPICKPQIRSQSSAQLLQGRKKRHLSETALAGERTRFEDFAFQRTEPGSHCDFTAVSNANVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLSKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNNRAYSKNAEAQDLVLKENPGELSSAQQCVAESPLELLADNTSLYAQDSLSLNDSQEIKSLRWERRAFPLKDEDTAALLCQDERKDQTEGASTAFHDEVFCSTTPENGHPPKMQLDGMEEYKTFAIGVTNVKRNR", "length": 990, "header": "tr|A0A8C2MSM6-1|A0A8C2MSM6_CRIGR Isoform 1 of KAT8 regulatory NSL complex subunit 1-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Kansl1l PE=4 SV=1 CANONICAL=A0A8C2MSM6-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MT75-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT75/entry", "sequence": { "sequence": "MTPALKEATTKGICFSSLPSAMESDKMLCVESPRTVDEKLTAGDTLSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKGVESNCCKLKNVLCNGSSIQLSKICHSHSEKEFIKKELSDTTSQCMKDIQIVLDSNLTKDTNVDKIHLQNCKWYPKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDMPISSSAAEKEEEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVQHYGQQMKFSMKHQLPTMKLFHEPTTVLGNSLLEHSEIKPEVNILASENKFWDDTNNGFAQCTAAEIQRFALSATGLLSHVEVGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRHIRASKGIVILEECPLPKDILKKQIQFSNQAVSLNTSVNSQVPQRGEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKEAFLNATQIPYMGSPLSWDNWEQSSNSQLLREHVSKLDSSFHPVLSLPSEMPLHLHFETLFKKTDVKGELAENPFVGDCIIAPPPAGERTRFEDFAFQRTEPGSHCDFTAVSNANVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLSKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNNRAYSKNAEAQDLVLKENPGELSSAQQCVAESPLELLADNTSLYAQDSLSLNDSQEIKSLRWERRAFPLKDEDTAALLCQDERKDQTEGASTAFHDEVFCSTTPENGHPPKMQLDGMEEYKTFAIGVTNVKRNR", "length": 947, "header": "tr|A0A8C2MT75-1|A0A8C2MT75_CRIGR Computationally mapped isoform of KAT8 regulatory NSL complex subunit 1-like protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Kansl1l PE=4 SV=1 CANONICAL=A0A8C2MSM6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7C5/entry", "sequence": { "sequence": "MTPALKEATTKGICFSSLPSAMESDKMLCVESPRTVDEKLTAGDTLSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKGVESNCCKLKNVLCNGSSIQLSKICHSHSEKEFIKKELSDTTSQCMKDIQIVLDSNLTKDTNVDKIHLQNCKWYPKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDMPISSSAAEKEEEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVQHYGQQMKFSMKHQLPTMKLFHEPTTVLGNSLLEHSEIKPEVNILASENKFWDDTNNGFAQCTAAEIQRFALSATGLLSHVEVGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRHIRASKGIVILEECPLPKDILKKQIQFSNQAVSLNTSVNSQVPQRGEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKEAFLNATQIPYMGSPLSWDNWEQSSNSQLLREHVSKLDSSFHPVLSLPSEMPLHLHFETLFKKTDVKGELAENPFVGDCIIAPPPVQGTSLNQWRNGYSPICKPQIRSQSSAQLLQGRKKRHLSETALGERTRFEDFAFQRTEPGSHCDFTAVSNANVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLSKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNNRAYSKNAEAQDLVLKENPGELSSAQQCVAESPLELLADNTSLYAQDSLSLNDSQEIKSLRWERRAFPLKDEDTAALLCQDERKDQTEGASTAFHDEVFCSTTPENGHPPKMQLDGMEEYKTFAIGVTNVKRNR", "length": 989, "header": "tr|A0A9J7F7C5-1|A0A9J7F7C5_CRIGR Computationally mapped isoform of KAT8 regulatory NSL complex subunit 1-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Kansl1l PE=4 SV=1 CANONICAL=A0A8C2MSM6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVQ6/entry", "sequence": { "sequence": "MTPALKEATTKGICFSSLPSAMESDKMLCVESPRTVDEKLTAGDTLSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKGVESNCCKLKNVLCNGSSIQLSKICHSHSEKEFIKKELSDTTSQCMKDIQIVLDSNLTKDTNVDKIHLQNCKWYPKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDMPISSSAAEKEEEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVQHYGQQMKFSMKHQLPTMKLFHEPTTVLGNSLLEHSEIKPEVNILASENKFWDDTNNGFAQCTAAEIQRFALSATGLLSHVEVGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRHIRASKVPQRGEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKEAFLNATQIPYMGSPLSWDNWEQSSNSQLLREHVSKLDSSFHPVLSLPSEMPLHLHFETLFKKTDVKGELAENPFVGDCIIAPPPAGERTRFEDFAFQRTEPGSHCDFTAVSNANVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLSKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNNRAYSKNAEAQDLVLKENPGELSSAQQCVAESPLELLADNTSLYAQDSLSLNDSQEIKSLRWERRAFPLKDEDTAALLCQDERKDQTEGASTAFHDEVFCSTTPENGHPPKMQLDGMEEYKTFAIGVTNVKRNR", "length": 912, "header": "tr|A0A9J7GVQ6-1|A0A9J7GVQ6_CRIGR Computationally mapped isoform of KAT8 regulatory NSL complex subunit 1-like protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Kansl1l PE=4 SV=1 CANONICAL=A0A8C2MSM6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A6/entry", "sequence": { "sequence": "MTPALKEATTKGICFSSLPSAMESDKMLCVESPRTVDEKLTAGDTLSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKGVESNCCKLKNVLCNGSSIQLSKICHSHSEKEFIKKELSDTTSQCMKDIQIVLDSNLTKDTNVDKIHLQNCKWYPKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDMPISSSAAEKEEEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVQHYGQQMKFSMKHQLPTMKLFHEPTTVLGNSLLEHSEIKPEVNILASENKFWDDTNNGFAQCTAAEIQRFALSATGLLSHVEVGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRHIRASKGIVILEECPLPKDILKKQIQFSNQAVSLNTSVNSQVPQRGEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKEAFLNATQIPYMGSPLSWDNWEQSSNSQLLREHVSKLDSSFHPVLSLPSEMPLHLHFETLFKKTDVKGELAENPFVGDCIIAPPPGERTRFEDFAFQRTEPGSHCDFTAVSNANVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLSKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNNRAYSKNAEAQDLVLKENPGELSSAQQCVAESPLELLADNTSLYAQDSLSLNDSQEIKSLRWERRAFPLKDEDTAALLCQDERKDQTEGASTAFHDEVFCSTTPENGHPPKMQLDGMEEYKTFAIGVTNVKRNR", "length": 946, "header": "tr|A0A9J7J7A6-1|A0A9J7J7A6_CRIGR Computationally mapped isoform of KAT8 regulatory NSL complex subunit 1-like protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Kansl1l PE=4 SV=1 CANONICAL=A0A8C2MSM6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAH2/entry", "sequence": { "sequence": "MTPALKEATTKGICFSSLPSAMESDKMLCVESPRTVDEKLTAGDTLSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKGVESNCCKLKNVLCNGSSIQLSKICHSHSEKEFIKKELSDTTSQCMKDIQIVLDSNLTKDTNVDKIHLQNCKWYPKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDMPISSSAAEKEEEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVQHYGQQMKFSMKHQLPTMKLFHEPTTVLGNSLLEHSEIKPEVNILASENKFWDDTNNGFAQCTAAEIQRFALSATGLLSHVEVGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRHIRASKVPQRGEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKEAFLNATQIPYMGSPLSWDNWEQSSNSQLLREHVSKLDSSFHPVLSLPSEMPLHLHFETLFKKTDVKGELAENPFVGDCIIAPPPVQGTSLNQWRNGYSPICKPQIRSQSSAQLLQGRKKRHLSETALAGERTRFEDFAFQRTEPGSHCDFTAVSNANVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLSKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNNRAYSKNAEAQDLVLKENPGELSSAQQCVAESPLELLADNTSLYAQDSLSLNDSQEIKSLRWERRAFPLKDEDTAALLCQDERKDQTEGASTAFHDEVFCSTTPENGHPPKMQLDGMEEYKTFAIGVTNVKRNR", "length": 955, "header": "tr|A0A9J7JAH2-1|A0A9J7JAH2_CRIGR Computationally mapped isoform of KAT8 regulatory NSL complex subunit 1-like protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Kansl1l PE=4 SV=1 CANONICAL=A0A8C2MSM6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761258", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761258", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YAS4-1", "protein_name": "KAT8 regulatory NSL complex subunit 1 like", "gene_name": "KANSL1L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTPALREAATKGHGIHLSPSLSSRAMESDTTLCMENSRAVEEKIKEDSIARITCSVLGFPTAEPSLRNNIFSVQHFASPPSSKHYQSVLLMSTNSALSSKTGKQMKSGEPDCSRMRNALHNGADASFGQISHSGPEEQVKGEAFSETTSPNLAETQRLLDSNVTESGNAEEVQLLNDKWYKKNGFLGRALGVCAETIKGDLLHQILHGPSEGILSCAREEVYARLLQCVTKQQMEISRAKRTQKRLQMLLAKHVIKHCDQQLKCFVKHQFQRMKLLHKPARFSSSSSLRCADGWPENTAATLGSSSSADVQNGVCVAPGEIRGFALSAGGLLSRVEKDLDSDATCSSSDEDYDEQTVRTAVEASYTSEWKWLADRARIGSRWTWLQAQISELEYKIQQLTDLHRQIRATKGMVILEEFPFPKDILKKQIQLTDQEALLNATGNSQAAIERQDSLPEHDFEMSPSSPTLLLRNIEKQSAQLSEIISSLIAPLNLSPASALSSKTCRHRQLVNGISFRASDNREVSSSSSWLLDHQHIKKRRRDRTRLRSFSVTNVSTSARTRPLHSFQKRKLYRMHGACDWNPQTSSFRDTSCPYRTQLPCVVPPSALSSSEYSPESKMLDYVQELDSSFHPVLSFPSDIPLHIYFETLLRKDDVKGEPVDASYPGVEFKIAPENDYNHHNVALKRWNNSCLSNSKSQSVSGTSEQLSEGRKKRHLSETAVGERNTRFETFSFQHAEPESPSSFAAVTNINAMSRPTHSTSSQHNSRRRLRSESSYDIDNIVIPMSLVAPSKLEKLQYKEILTPSWRVVELEPLERSHADEEEAEDLSDEVFSSRHTKYEERERARWSLWEQSRWPRRNSRSYGKNADGRHGQDSVQKDHPGSSCASLHCAAEPVPDLTSEAHSSVCSGIAQLRRESQEAKSGLWELRVFPLKDEEVEALLCQDQITNQTEMSSAAFPSDSPCAPCTPIGLPDNGLPARKQSTEESEESENVCLGINSTRKQR", "length": 1002 }, "evidence": [ { "id": "A0A8C2MSM6", "url": "https://omabrowser.org/oma/group/A0A8C2MSM6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TIT8-1", "protein_name": "KAT8 regulatory NSL complex subunit 1 like", "gene_name": "KANSL1L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTPALREAATKGICFSSLPNTMESDKMLCMESPRTVDEKLKGDTFSQMLGFPTSEPTLNTNFVNLKHFGSPQSSKHYQTVLLMSSNTTLNKYNENYKQKKLGEPNCNKLKNILCNGGSIQLSKICHSHSEEFIKKEPLSDTTSPCVTDVQIILDSNVTKDTNVDKVQLKNCKWYQKNALLDKVSGGEIKKGLLHHAQNKIGPDHSYVPISSSAAEKEEEVNARLLQCVSKQKILLSQARRTQKHLQMLLAKHVVKHYGQQMKFSMKHQLPKVKIFHEPTTILDNSLPKCTEIKPDINILTAETKLWNDTKNGFARCTAAEIQRFALSATGLLSHVEEGLDSDATDSSSDDDLDEYTVRKNVSVNCSTEWKWLVDRARVGSRWTWLQAQISELEYKIQQLTDVHRQIRASKGIVILEECRLPKDILKKQVQFADHPASLNTSGTPQIPQESQDPLPEQDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLTIMSTAARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKETRFLNTTQMPCLQSASIWSSCEHNSKSQMLTEHVSELDSSFHSVLSLPSDVPLRFHFETLLKKTEIKGDLTENKFLGDCIISPSPVRNTSLNQWRNGYSSICKPQIESESSVQLLQGRKKRHLSETAIGERTRFEEFAFQRTEPGSQSTFTAVTNVNVLSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPSWRMVVLQPLDEYDLGEEEIENLSDEVFSLRHKKYEEKEQARWSLWEQSKWQRRNSRAYPKNVEGQDLLLKDCPYDFSGGQHCTVGSPAEPPSESQASSAHGSPSLSQETKSLWWERRTFPLKDEDTEALLCQDEKNDQVERSSPAFHGEVFCTSAPENGHHPKRQADGIEEYKTLGLGLTHVKKNR", "length": 987 }, "evidence": [ { "id": "A0A8C2MSM6", "url": "https://omabrowser.org/oma/group/A0A8C2MSM6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AUZ9-1", "protein_name": "KAT8 regulatory NSL complex subunit 1-like protein", "gene_name": "KANSL1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTPALREATAKGISFSSLPSTMESDKMLYMESPRTVDEKLKGDTFSQMLGFPTPEPTLNTNFVNLKHFGSPQSSKHYQTVFLMRSNSTLNKHNENYKQKKLGEPSCNKLKNILYNGSNIQLSKICLSHSEEFIKKEPLSDTTSQCMKDVQIILDSNITKDTNVDKVQLQNCKWYQENALLDKVTDAEIKKGLLHCTQKKIVPGHSNVPVSSSAAEKEEEVHARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVKHYGQQMKLSMKHQLPKMKTFHEPTTILGNSLPKCTEIKPEVNTLTAENKLWDDAKNGFARCTAAEIQRFAFSATGLLSHVEEGLDSDATDSSSDDDLDEYTLRKNVAVNCSTEWKWLVDRARVGSRWTWLQAQISDLECKIQQLTDIHRQIRASKGIVVLEECQLPKDILKKQMQFADQAASLNILGNPQVPQECQDPVPEQDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGIYRSASENLDELSSSSSWLLNQKHSKKKRKDRTRLKSSSLTFMSTSARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKETAFLNTTQMPCLQSASTWSSYEHNSESYLLREHVSELDSSFHSVLSLPSDVPLHFHFETLLKKTEIKGNLAENKFVDEYIISPSPVHSTLNQWRNGYSPICKPQIRSESSAQLLQGRKKRHLSETALGERTKLEESDFQHTESGSHSNFTAVSNVNVLSRIQNSSRNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPSWRMVVLQPLDEYNLGKEEIEDLSDEVFSLRHKKYEEREQARWSLWEQSKWHRRNSRAYSKNVEGQDLLLKEYPNNFSSSQQCAAASPPGLPSENQDLCAYGLPSLNQSQETKSLWWERRAFPLKGEDMAALLCQDEKKDQVERSSTAFHGEIFGTSVPENGHHPKKQSDGMEEYKTFGLGLTNVKKNR", "length": 987 }, "evidence": [ { "id": "A0A8C2MSM6", "url": "https://omabrowser.org/oma/group/A0A8C2MSM6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZZY7-1", "protein_name": "KAT8 regulatory NSL complex subunit 1-like", "gene_name": "Kansl1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTPALKEATTKGICFSSLPNTMESDKMLCMESPRAVDEKLKGGDTFSQMLGFPTPEPTLNTNFVNLKHFTSPQASKHFQTVLLMSSNSTLNKYNENYNQKKVMESNCCKLKNALCNGSSVQLSKICHSHSENEIIKKELSDTTSQCMKDIQIVLDSNLTKDANVDKVHLQNCKWYQKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDVPASSSAAEKEEEVNARLLHCVSKQKSLLSQARRTQKHLQMLLAKHVVKHYGQQMKFSMKHQLPTMKIFHEPTTVLSNSLLEHTEIKPEVNILASENKFWDDTNNGFSQCTAAEIQRFALSATGLLSHVEEGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLIDRAQVGSRWTWLQAQISELEYKIQQLTDIHRQIRASKGIVILEECQLPKDILKKQIQFSNQAVSLNTSVNSQVSQRSEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPETLPSKEAFLNTTQMPYMGSPLSWDKWEQSSKSHLSREHVSKLDPSFHPVLSLPSEIPLHLHFETLFKKTDIKGELAENKFVGDCIISPPPVQGTSLNQWRNGYSPVCKPQIRSQSSAQLLQGRKKRHLSETALAGERTRFEEFAFQRSEPGSHCNFTAVSNPNVTSRTQNSSSQNTARRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRMVVLQPLDEHNLNKEEIEDLSDEVFSLRHRKYEEREQARWSLWEQSKWHRRNNRAYSKNVEGQDLVLKEHSRELGSVQQGAAESPFELPAESHSLCTQDSLSLNDGQEVKPLRWERRAFPLKDEDTAALLCQDERKDLTEGASTAFRDEAFCSTTPENSHPPSVQLDGMEEYKIFGIGVTSVKRNR", "length": 990 }, "evidence": [ { "id": "A0A8C2MSM6", "url": "https://omabrowser.org/oma/group/A0A8C2MSM6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5DTI6-1", "protein_name": "KAT8 regulatory NSL complex subunit 1-like protein", "gene_name": "Kansl1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTPALKEATTKGICFSSLPNTMESDKMLCMESPRTVDEKLKGGDTFSQMLGFPTPEPTLNTNFVNLKHFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKVMESNCSKLKNVLCNGSSIQLSKICPSHSENEFIKKELSDTTSQCMKDIQIVLDSNLTKDANVDRLHLQNCKWYQKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDVPTSSSAAEKEQEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVKHYGQQMKFSMKHQLPTMKIFHEPTTVLSNSLLEHTEIKPEVNILASENKFWDDTNNGFSQCTAAEIQRFALSATGLLSHVEEGLDSDATDSSSDDELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRQIRASKGIVILEECQLPKDILKKQIQFSNQAVSLNTSVNSQVPQRSEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRKLYRLSPTFYWTPETLPSKEAFLSSTQTPYTGSPFSWDNWEQSSRSHLLREQVSKLDSSFHPVLSLPSEIPLHLHFETLFKKTDMKGELAENQFVGDCLISPPPVQGTSSLNQWRNGYSPICKPQIRSQPSVQLLQGRKKRHLSETALAGERTRFEEFAFQRSEPGSHCNFTAVSNANVTSRTQNPSSQNTSRRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRKVVLQPLDEHNLNKEEIEDLSDDVFSLRHRKYEEREQARWSLWEQSKWHRRNNRAYSKNVEGQDLVLKEHSSELGSAQQGTAESPFELPAESHSLCAQDSLSLNDGQEDKSLRWERRAFPLKDEDTAALLCQDERKDQTGGTSTAFHDEVFCSTTPESGHPPKMQLDGMEEYKSFGIGVTNVKRNR", "length": 991 }, "evidence": [ { "id": "A0A8C2MSM6", "url": "https://omabrowser.org/oma/group/A0A8C2MSM6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone acetyltransferase binding", "id": "GO:0035035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035035", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "NSL complex", "id": "GO:0044545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044545", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 440, "end_pos": 442, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" }, { "start_pos": 749, "end_pos": 751, "annotation": "n_glycosylation_sequon" }, { "start_pos": 756, "end_pos": 758, "annotation": "n_glycosylation_sequon" }, { "start_pos": 815, "end_pos": 817, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" }, { "start_pos": 896, "end_pos": 898, "annotation": "n_glycosylation_sequon" }, { "start_pos": 908, "end_pos": 910, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MSM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM6" }, { "id": "PS52052", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52052" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PEHE", "eco_id": "ECO_0000259", "start_pos": 797, "end_pos": 918, "start_aa": "Glu", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 }, { "start_pos": 157, "end_pos": 159 }, { "start_pos": 365, "end_pos": 367 }, { "start_pos": 440, "end_pos": 442 }, { "start_pos": 493, "end_pos": 495 }, { "start_pos": 596, "end_pos": 598 }, { "start_pos": 749, "end_pos": 751 }, { "start_pos": 756, "end_pos": 758 }, { "start_pos": 815, "end_pos": 817 }, { "start_pos": 87, "end_pos": 89 }, { "start_pos": 896, "end_pos": 898 }, { "start_pos": 908, "end_pos": 910 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MSQ7-1", "uniprot_ac": "A0A8C2MSQ7", "uniprot_id": "A0A8C2MSQ7_CRIGR", "mass": { "chemical_mass": 145768.0, "monoisotopic_mass": 145768.0 }, "refseq": { "ac": "XP_027258578", "name": "SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258578" }, "gene_names": [ { "name": "Sh3tc2", "type": "recommended", "evidence": [ { "id": "A0A8C2MSQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7" } ] }, { "name": "Sh3tc2", "type": "synonym", "evidence": [ { "id": "XP_027258578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258578" } ] } ], "protein_names": [ { "name": "SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027258578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258578" }, { "id": "A0A8C2MSQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027258578.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258578", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258578" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sh3tc2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7", "locus": {} } ], "crossref": [ { "id": "cd11885", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11885", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758013", "url": "https://www.ncbi.nlm.nih.gov/gene/100758013", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758013", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758013", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MSQ7", "url": "https://www.orthodb.org/?gene=A0A8C2MSQ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22647", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22647", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22647:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22647:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258578", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258578", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MSQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MSQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGCFCIPGERSLPWCPGKEGPSKDPSRSGEDTSSLENKRKCFLPRNMTQDLVLSFCVKSRSRRCVNAPLQEAARRRLWALENEDHEVSALFKDLSARLVRVQSQKDQFLITFKTVEEIWKFSTYLNLGYVSTCLEQLLFDHKYWLNCRLVDDTEIQVFVDDNHLENLYLGLLLQEGHFLCRATCSVAQPDEKEGEYLTLCKNELISVLPEGESEWEGVSLVTGQRGLVPVSALEPLSVPFHQWFLKNYPGICGLPRKREWTGSYQIGRGRCKALMDYEQEEKDELSFVQGENIEILGFVIPGLQWFIGKSVSSGEVGFVPTRIIDPDSCSPVSKNSAFFSDEERCSLWVPGSDRKPECLDFLHGLAHTDITSVYRLSELESIQSLQNDLSASQPEGLKEARPGRTWEERLTLGSRRSSSSVGSSLEEELLSASSDSYHLPEPDDLDDPELFMDLSTSLEEDELENFAPILAFLDHEGYSDHFKSLYNFSFSFITSSFYSFSEEDELLAYLETSRKWAKMSHMTWAHARLCFLLGRLSIRKIKLSQARVYFEEAIRVLDGAFEDLSLVSALYINLAAIYLRQRLRHKGPTLLEKAGALLACLPDREFSAKNELDVVAYVLRQGIVMGSGPLEARSCFLAIRLLLSLGRHEEVLPFAERLQLLSGQPPASEATATMLSFLYDKKYLPHLAVASVQKRGPQSARGISASIWQAYLVLQNAAKILGVPSSSWGEVSALACPTLRQALAACEEQTDLSTQRILCLILSKMYLQHRSPEGSIYYLSQAQAVGKLVGEQEAFESSLCLAWAYLLARRGKKALEILEPLLCSLRETECMTQRGVVHNLLGLAFQDEGRTSRAAKSYLRALIRAREMGNVRNQAVSIANLGHLTLKSCMRQSARGYLLQAVRLYSELQASMETDMELIQVLLWLGQALVSEHQLVHSRLCYEMALMFGLRHQHLHSQLQVTKSLCHFYSSVCPNPDACITYHEHWLALAQQLRDREMEGRLLESLGQLYRNLNTSRSLRRSLTCIKESLRIFVDLGERDKVAEAWLGAGRLHYLMHEDELVELYLQAAIQTALGSEEPSLALKLYEEAGDVFFNGTRHRHRAVEYYRTGAVPLARRMKALRTELRIFNKLTELQISLEGYDKALEFATLAARLSLLTGDHKQELVAFHRLATVYFSLNMYEMAEDCYLKTLSLCPPWLQSPKEALYYAKVYYRLGRLTFYQLKDAHDATEYFLLALAAAVLLGDEELQVTIKNRLDNICQSPLWLNNPLGCSSERARWLSGGSLAL", "length": 1288, "header": "tr|A0A8C2MSQ7-1|A0A8C2MSQ7_CRIGR Isoform 1 of SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh3tc2 PE=4 SV=1 CANONICAL=A0A8C2MSQ7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MSQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7/entry", "sequence": { "sequence": 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"url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of intracellular protein transport", "id": "GO:0033157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033157", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7" } ], "pmid": "" }, { "name": "regulation of ERBB signaling pathway", "id": "GO:1901184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901184", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7" } ], "pmid": "" }, { "name": "regulation of endocytic recycling", "id": "GO:2001135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001135", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MSQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1015, 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{ "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1015, "end_pos": 1017 }, { "start_pos": 1096, "end_pos": 1098 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 488, "end_pos": 490 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MT44-1", "uniprot_ac": "A0A8C2MT44", "uniprot_id": "A0A8C2MT44_CRIGR", "mass": { "chemical_mass": 26166.0, "monoisotopic_mass": 26166.0 }, "refseq": { "ac": "XP_003502688", "name": "protein FAM3B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502688" }, "gene_names": [ { "name": "Fam3b", "type": "recommended", "evidence": [ { "id": "A0A8C2MT44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44" } ] }, { "name": "Fam3b", "type": "synonym", "evidence": [ { "id": "XP_003502688", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502688" } ] } ], "protein_names": [ { "name": "Protein FAM3B", "type": "synonym", "evidence": [ { "id": "A0A8C2MT44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44/entry#names_and_taxonomy" } ] }, { "name": "protein FAM3B", "type": "synonym", "evidence": [ { "id": "XP_003502688", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502688" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613905.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502688", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502688" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MT44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam3b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44", "locus": {} } ], "crossref": [ { "id": "100764355", "url": "https://www.ncbi.nlm.nih.gov/gene/100764355", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039220", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039220", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764355", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764355", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FPKICFE", "url": "https://omabrowser.org/oma/group/FPKICFE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MT44", "url": "https://www.orthodb.org/?gene=A0A8C2MT44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14592", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14592", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15711", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15711", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502688", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502688", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MT44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MT44-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPVAAGIFKALVFIFSSLCAWYSGYLIAELIPDVPLSNTLYSIRSIGERPVLKAPAPKRQKCDHWSPCPPDTYAYRLLSGGGLDKFAKICFEDELLLGEKTGNVARGINIATVNYETGKLIAAKYFDMYEGDNSGPMTKFIQSTPSKSLLFMVTHDDGSSRLEAQAKDVIEALGSKEIKNMKFRSSWVFVAAKGFELPPEMEREKINHSDQSKNRYWGWPAEIQIEGCIPKGLG", "length": 235, "header": "tr|A0A8C2MT44-1|A0A8C2MT44_CRIGR Isoform 1 of Protein FAM3B OS=Cricetulus griseus OX=10029 GN=Fam3b PE=3 SV=1 CANONICAL=A0A8C2MT44-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MT44-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44/entry", "sequence": { "sequence": "MRPVAAGIFKALVFIFSSLCAWYSGYLIAELIPDVPLSNTLYSIRSIGERPVLKAPAPKRQKCDHWSPCPPDTYAYRLLSGGGLDKFAKICFEDELLLGEKTGNVARGINIATVNYETGKLIAAKYFDMYEGDNSGPMTKFIQSTPSKSLLFMVTHDDGSSRLEAQAKDVIEALGSKEIKNMKFRSSWVFVAAKGFELPPEMEREKINHSDQSKNRYWGWPAEIQIEGCIPKGLG", "length": 235, "header": "tr|A0A8C2MT44-1|A0A8C2MT44_CRIGR Isoform 1 of Protein FAM3B OS=Cricetulus griseus OX=10029 GN=Fam3b PE=3 SV=1 CANONICAL=A0A8C2MT44-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MT44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MT44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT44" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764355", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764355", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KAG4-1", "protein_name": "FAM3 metabolism regulating signaling molecule B", "gene_name": "Fam3b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPVTAAPVPKRQKCDHWSPCPPDTYAYRLLSGGGLDKYAKICFEDEMLLGEKTGNVARGINIAVVDYETGKVISTKYFDMYEGDNSEPMTKFIQSIPSKSLLFMVTHDDGSHKLQAQAKDAIEALGSKEIKNIKFRSSWVFVAAKGFELPSEMEREKINHSDQSRNRYSGWPAEIQIEGCIPKGLR", "length": 187 }, "evidence": [ { "id": "A0A8C2MT44", "url": "https://omabrowser.org/oma/group/A0A8C2MT44/", 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247559" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MTD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rarres1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7", "locus": {} } ], "crossref": [ { "id": "100759080", "url": "https://www.ncbi.nlm.nih.gov/gene/100759080", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759080", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MTD7", "url": "https://www.orthodb.org/?gene=A0A8C2MTD7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28591", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28591", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28591:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28591:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06907", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06907", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MTD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MTD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPRRPLSPVLLLWLLLSLALPAAAVAPVVPWDWEHTDVPPRPPAAGLPRGILQLAARAALHYFNFRAGSPSALRVLAAVQEGRAWVDPQEGCEVNLVFSTERYNPEEEDEEHLGKCSARVFFKNQKPKPAINVTCMGLTEKMKRQARDYLLYKQLKQLKNPLDVIRIPDSHGQIDPSLRPLWDLAFLGSSYVMWEKTTQFLNYYLIQISSVKQLKTNDDGIDFDFTVLLHEFSTQEIIPCRIHLFWYPGKPLKVQYHCQELQSPEEASGTDEASAMAPTELSNF", "length": 285, "header": "tr|A0A8C2MTD7-1|A0A8C2MTD7_CRIGR Isoform 1 of Retinoic acid receptor responder protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rarres1 PE=3 SV=1 CANONICAL=A0A8C2MTD7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MTD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7/entry", "sequence": { "sequence": "MQPRRPLSPVLLLWLLLSLALPAAAVAPVVPWDWEHTDVPPRPPAAGLPRGILQLAARAALHYFNFRAGSPSALRVLAAVQEGRAWVDPQEGCEVNLVFSTERYNPEEEDEEHLGKCSARVFFKNQKPKPAINVTCMGLTEKMKRQARDYLLYKQLKQLKNPLDVIRIPDSHGQIDPSLRPLWDLAFLGSSYVMWEKTTQFLNYYLIQISSVKQLKTNDDGIDFDFTVLLHEFSTQEIIPCRIHLFWYPGKPLKVQYHCQELQSPEEASGTDEASAMAPTELSNF", "length": 285, "header": "tr|A0A8C2MTD7-1|A0A8C2MTD7_CRIGR Isoform 1 of Retinoic acid receptor responder protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rarres1 PE=3 SV=1 CANONICAL=A0A8C2MTD7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MTD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MTD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MTD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metalloendopeptidase inhibitor activity", "id": "GO:0008191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008191", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MTD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MTD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTD7" }, { "id": "PS52033", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52033" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cystatin LXN-type", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 144, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MTY3-1", "uniprot_ac": "A0A8C2MTY3", "uniprot_id": "A0A8C2MTY3_CRIGR", "mass": { "chemical_mass": 54711.0, "monoisotopic_mass": 54711.0 }, "refseq": { "ac": "XP_007622887", "name": "LETM1 domain-containing protein LETM2, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007622887" }, "gene_names": [ { "name": "Letm2", "type": "recommended", "evidence": [ { "id": "A0A8C2MTY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTY3" } ] }, { "name": "Letm2", "type": "synonym", "evidence": [ { "id": "XP_007622887", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007622887" } ] } ], "protein_names": [ { "name": "LETM1 domain-containing protein LETM2, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007622887", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007622887" } ] }, { "name": "LETM1 domain-containing protein LETM2, mitochondrial isoform X5", "type": "synonym", "evidence": [ { "id": "A0A8C2MTY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTY3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 476 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613685.1) and transcript sequence (JI862725.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007622887.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007622887", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007622887" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MTY3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTY3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Letm2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTY3", "locus": {} } ], "crossref": [ { "id": "100753490", "url": "https://www.ncbi.nlm.nih.gov/gene/100753490", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753490", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MTY3", "url": "https://www.orthodb.org/?gene=A0A8C2MTY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14009:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14009:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07766", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07766", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007622887", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007622887", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MTY3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MTY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFYSYNSFLAILWTRLPSHFVYPSCSHSPSLAFLHLPDSHLRTTYMKSYGSRKYSYPSLPGNKVHPLRTRLTQKLHTTCWLQNHPSKPQPEQIPEKPKPTSPLPPKGAETEITEEKRSFGQKIMNELKYYYNGFYLLWSDTKVAARIVWRLLHGQVLTRRERRRLLRTCVDVFRLVPFMVFLIVPFMEFLIPLFLKLFPEMLPSTFESESKKEEKQKKKMAAKLEIAKFLQETMTEMARRNLAKLGDASSQLSSYVKQVQTGHRPSTKEIVGFSKLFEDQLALEHLDRPQLVALCKLLELQTFGTNNLLRFQLLMTLKSIKADDEIIAKEGVKAMSVPELQAACRARGMRSLGLTEEQLSQQLSEWLDLHLKENVPPSLLLLSRTFYLIDVKPKPIELPPSIEVPKTNLVSASSMPPESQENVVDPAPQLKGTKDEELTKLPPVPSSVITPPAIISKEAIIQAESQKTLQNSKANSKGA", "length": 480, "header": "tr|A0A8C2MTY3-1|A0A8C2MTY3_CRIGR Isoform 1 of LETM1 domain-containing protein LETM2, mitochondrial isoform X5 OS=Cricetulus griseus OX=10029 GN=Letm2 PE=4 SV=1 CANONICAL=A0A8C2MTY3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MTY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTY3/entry", "sequence": { "sequence": "MTFYSYNSFLAILWTRLPSHFVYPSCSHSPSLAFLHLPDSHLRTTYMKSYGSRKYSYPSLPGNKVHPLRTRLTQKLHTTCWLQNHPSKPQPEQIPEKPKPTSPLPPKGAETEITEEKRSFGQKIMNELKYYYNGFYLLWSDTKVAARIVWRLLHGQVLTRRERRRLLRTCVDVFRLVPFMVFLIVPFMEFLIPLFLKLFPEMLPSTFESESKKEEKQKKKMAAKLEIAKFLQETMTEMARRNLAKLGDASSQLSSYVKQVQTGHRPSTKEIVGFSKLFEDQLALEHLDRPQLVALCKLLELQTFGTNNLLRFQLLMTLKSIKADDEIIAKEGVKAMSVPELQAACRARGMRSLGLTEEQLSQQLSEWLDLHLKENVPPSLLLLSRTFYLIDVKPKPIELPPSIEVPKTNLVSASSMPPESQENVVDPAPQLKGTKDEELTKLPPVPSSVITPPAIISKEAIIQAESQKTLQNSKANSKGA", "length": 480, "header": "tr|A0A8C2MTY3-1|A0A8C2MTY3_CRIGR Isoform 1 of LETM1 domain-containing protein LETM2, mitochondrial isoform X5 OS=Cricetulus griseus OX=10029 GN=Letm2 PE=4 SV=1 CANONICAL=A0A8C2MTY3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEI8/entry", "sequence": { "sequence": "MVFLIVPFMEFLIPLFLKLFPEMLPSTFESESKKEEKQKKKMAAKLEIAKFLQETMTEMARRNLAKLGDASSQLSSYVKQVQTGHRPSTKEIVGFSKLFEDQLALEHLDRPQLVALCKLLELQTFGTNNLLRFQLLMTLKSIKADDEIIAKEGVKAMSVPELQAACRARGMRSLGLTEEQLSQQLSEWLDLHLKENVPPSLLLLSRTFYLIDVKPKPIELPPSIEVPKTNLVSASSMPPESQENVVDPAPQLKGTKDEELTKLPPVPSSVITPPAIISKEAIIQAESQKTLQNSKANSKGA", "length": 301, "header": "tr|A0A9J7HEI8-1|A0A9J7HEI8_CRIGR Computationally mapped isoform of LETM1 domain-containing protein LETM2, mitochondrial isoform X8 OS=Cricetulus griseus OX=10029 GN=Letm2 PE=4 SV=1 CANONICAL=A0A8C2MTY3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HF99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF99/entry", "sequence": { "sequence": "MTFYSYNSFLAILWTRLPSHFVYPSCSHSPSLAFLHLPDSHLRTTYMKSYGSRKYSYPSLPGNKVHPLRTRLTQKLHTTCWLQNHPSKPQPEQIPEKPKPTSPLPPKGAETEITEEKRSFGQKIMNELKYYYNGFYLLWSDTKVAARIVWRLLHGQVLTRRERRREEKQKKKMAAKLEIAKFLQETMTEMARRNLAKLGDASSQLSSYVKQVQTGHRPSTKEIVGFSKLFEDQLALEHLDRPQLVALCKLLELQTFGTNNLLRFQLLMTLKSIKADDEIIAKEGVKAMSVPELQAACRARGMRSLGLTEEQLSQQLSEWLDLHLKENVPPSLLLLSRTFYLIDVKPKPIELPPSIEVPKTNLVSASSMPPESQENVVDPAPQLKGTKDEELTKLPPVPSSVITPPAIISKEAIIQAESQKTLQNSKANSKGA", "length": 432, "header": "tr|A0A9J7HF99-1|A0A9J7HF99_CRIGR Computationally mapped isoform of LETM1 domain-containing protein LETM2, mitochondrial isoform X7 OS=Cricetulus griseus OX=10029 GN=Letm2 PE=4 SV=1 CANONICAL=A0A8C2MTY3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP5/entry", "sequence": { "sequence": "MKSYGSRKYSYPSLPGNKVHPLRTRLTQKLHTTCWLQNHPSKPQPEQIPEKPKPTSPLPPKGAETEITEEKRSFGQKIMNELKYYYNGFYLLWSDTKVAARIVWRLLHGQVLTRRERRRLLRTCVDVFRLVPFMVFLIVPFMEFLIPLFLKLFPEMLPSTFESESKKEEKQKKKMAAKLEIAKFLQETMTEMARRNLAKLGDASSQLSSYVKQVQTGHRPSTKEIVGFSKLFEDQLALEHLDRPQLVALCKLLELQTFGTNNLLRFQLLMTLKSIKADDEIIAKEGVKAMSVPELQAACRARGMRSLGLTEEQLSQQLSEWLDLHLKENVPPSLLLLSRTFYLIDVKPKPIELPPSIEVPKTNLVSASSMPPESQENVVDPAPQLKGTKDEELTKLPPVPSSVITPPAIISKEAIIQAESQKTLQNSKANSKGA", "length": 434, "header": "tr|A0A9J7KFP5-1|A0A9J7KFP5_CRIGR Computationally mapped isoform of LETM1 domain-containing protein LETM2, mitochondrial isoform X6 OS=Cricetulus griseus OX=10029 GN=Letm2 PE=4 SV=1 CANONICAL=A0A8C2MTY3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282628", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282628" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU01", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU01" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smtnl2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU01", "locus": {} } ], "crossref": [ { "id": "cd21261", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21261", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758954", "url": "https://www.ncbi.nlm.nih.gov/gene/100758954", "database": "GeneID", "categories": [ "Genome 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"MEPTPDAEEAHSVREALGRYEAALEGAVRALHEDMQGLQRGVERRVAEALRLAGPLARTVAELQRDNQRLQAQLERLTRQVEALGLATGVSPAPGTPSPPPAATVTERAPRLGTARFSSHATFSLSGRSQSLEHDEVGDLEVRRTSNSCTMENGHQLGAEKNSSFMRSLSGSGYGAVTAGKHKDSPPLVTPPQSPPSSQPPAMTQAPRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTASKGKGETRAKLKRSQSFGVASASSIKQILLEWCRSKTVGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRQKNFELAFTMAENLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE", "length": 376, "header": "tr|A0A9J7H2E4-1|A0A9J7H2E4_CRIGR Computationally mapped isoform of Smoothelin-like protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Smtnl2 PE=3 SV=1 CANONICAL=A0A8C2MU01-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 256, "start_aa": "Thr", "end_pos": 256, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr256", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 96, "start_aa": "Thr", "end_pos": 96, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr96", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU01", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU01" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613919.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502897" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU34" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760395", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU34", "locus": {} } ], "crossref": [ { "id": "100760395", "url": "https://www.ncbi.nlm.nih.gov/gene/100760395", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100760395", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760395", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NPKSHMV", "url": "https://omabrowser.org/oma/group/NPKSHMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MU34", "url": "https://www.orthodb.org/?gene=A0A8C2MU34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36867", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36867", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36867:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36867:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003502897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502897", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MU34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MU34-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVLDEYDNEFPQSVTFCQLISEDDFERQAATYTERSLRRLFRTLDRNPALAERVVRKGKQTEIEQRGLLSCLWAKFVCAVQGELNQCNSMGALEMHQRLEQLKRRIHRVHLYSQGSKKRRKKPKLKKADPVLLHDRSTSPCLPPAPLPPPLPPPPPPPPPVTTMASVVAASPSVYTMPRVFGPFPPMSGKPMEKLDISRSEVKLSWNGLSSTSKSHMVDLTPLVLNPGGFHFSYLTANSAHKFHCPGFPWTTACSEPSNTDDTPSPVVKASIFTPPVLLKFQPVPRPKDDSENDPGSAESIPAKKSE", "length": 308, "header": "tr|A0A8C2MU34-1|A0A8C2MU34_CRIGR Isoform 1 of Probable inositol polyphosphate 5-phosphatase C9G1.10c OS=Cricetulus griseus OX=10029 GN=LOC100760395 PE=4 SV=1 CANONICAL=A0A8C2MU34-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MU34-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU34/entry", "sequence": { "sequence": "MEVLDEYDNEFPQSVTFCQLISEDDFERQAATYTERSLRRLFRTLDRNPALAERVVRKGKQTEIEQRGLLSCLWAKFVCAVQGELNQCNSMGALEMHQRLEQLKRRIHRVHLYSQGSKKRRKKPKLKKADPVLLHDRSTSPCLPPAPLPPPLPPPPPPPPPVTTMASVVAASPSVYTMPRVFGPFPPMSGKPMEKLDISRSEVKLSWNGLSSTSKSHMVDLTPLVLNPGGFHFSYLTANSAHKFHCPGFPWTTACSEPSNTDDTPSPVVKASIFTPPVLLKFQPVPRPKDDSENDPGSAESIPAKKSE", "length": 308, "header": "tr|A0A8C2MU34-1|A0A8C2MU34_CRIGR Isoform 1 of Probable inositol polyphosphate 5-phosphatase C9G1.10c OS=Cricetulus griseus OX=10029 GN=LOC100760395 PE=4 SV=1 CANONICAL=A0A8C2MU34-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU34" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"evidence": [ { "id": "A0A8C2MU34", "url": "https://omabrowser.org/oma/group/A0A8C2MU34/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0ABK0LCJ9-1", "protein_name": "RIKEN cDNA 2610318N02 gene like", "gene_name": "2610318N02Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVLDEFDSEFPLSVTFCQLISEDDFERQAATYTERALRRLFRSLDRNPALAERVVRKGKQTEIEQRGLLSNLWAKFVCTVQGDLNQCNSMGALEMHQRLEQLKRRIHRVHLYSQDAKKRRRRPKPKKPDPIFRDRSTSPCLPPALLPPPLLPPPPPQPVTTVASVVAASPSVYTMPRVFGPFPPLSGKPMEKLDISRSEVKLNWNGLSSTSKSHMVDLTPLVLNPGGFHFSYLAGNSAHKLHCPAFPCFLEFYELFFRRKRFNLERISTKFRTTACSGPTNTDKTPSPPVKASIFTPPVLLKFQPVPRPNDDSENDPGNAESTPAKENQ", "length": 330 }, "evidence": [ { "id": "A0A8C2MU34", "url": "https://omabrowser.org/oma/group/A0A8C2MU34/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MU76-1", "uniprot_ac": "A0A8C2MU76", "uniprot_id": "A0A8C2MU76_CRIGR", "mass": { "chemical_mass": 75982.0, "monoisotopic_mass": 75982.0 }, "refseq": { "ac": "XP_003508059", "name": "coiled-coil domain-containing protein 81", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508059" }, "gene_names": [ { "name": "Ccdc81", "type": "recommended", "evidence": [ { "id": "A0A8C2MU76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" } ] }, { "name": "Ccdc81", "type": "synonym", "evidence": [ { "id": "XP_003508059", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508059" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 81", "type": "synonym", "evidence": [ { "id": "A0A8C2MU76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 81", "type": "synonym", "evidence": [ { "id": "XP_003508059", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508059" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614469.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508059", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508059" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc81", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76", "locus": {} } ], "crossref": [ { "id": "100762831", "url": "https://www.ncbi.nlm.nih.gov/gene/100762831", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040673", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040673", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762831", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762831", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QCEKYPR", "url": "https://omabrowser.org/oma/group/QCEKYPR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MU76", "url": "https://www.orthodb.org/?gene=A0A8C2MU76", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14362", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14362", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14362:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14362:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14908", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14908", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18289", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18289", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508059", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508059", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MU76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MU76-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDRIAPAFQDLRRQVLPTLPSLSQEEVSTIWGNVSEFVEKQLTMHKGVQISGLGTFTFTRQKLEVGNNKFILMQRPVFIMAEKLVQTHGLKQNKVFSPGDIPVVPLNFVMISLEGPFNRDTIEGCVKETLLFLSRSISVKQNVEFTFKGIGVLSIRDSKVKMRFYKDFLCMVDGSGTLTKALANRPGTMDSVLSSREGYGKRPNSALAFPRIEHKETENKPPMEVIVEEGGENKPRKTKLKDLSDKEEGAKEILSPKKHRDRQSISPAKVTSVSLLDKFERNVNGGKIMPSENLSPPGYQRNDNEKPRTSPVPACQDHNKAGQEMCYVCLQRAQRNFPLYYGEDRRRREIEDERLMQQYQILKDQEAVFKNQVKSMAAREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPEINAFKQEEYSQTLLKQMESKREKEIKQRQNRELMDRLEQVQLTEELAAQRAQYLKEKMEETQYYKRALDAQVKNKPSQLPMFEPDSAEPIFGKNEGEMEAEKRKREQSCMKHQMEAAASLKRNTILNQIVDQRRDLQMLQRTQREHLADRAAEADRMNRIHQCLQEDWDRSLSMKRQRDLEEKAFERASDKLFLLDQCEKYRRCRQCQRRTSNVGESNVWPLNKFLQGSRLLV", "length": 654, "header": "tr|A0A8C2MU76-1|A0A8C2MU76_CRIGR Isoform 1 of Coiled-coil domain-containing protein 81 OS=Cricetulus griseus OX=10029 GN=Ccdc81 PE=4 SV=1 CANONICAL=A0A8C2MU76-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MU76-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76/entry", "sequence": { "sequence": "MLDRIAPAFQDLRRQVLPTLPSLSQEEVSTIWGNVSEFVEKQLTMHKGVQISGLGTFTFTRQKLEVGNNKFILMQRPVFIMAEKLVQTHGLKQNKVFSPGDIPVVPLNFVMISLEGPFNRDTIEGCVKETLLFLSRSISVKQNVEFTFKGIGVLSIRDSKVKMRFYKDFLCMVDGSGTLTKALANRPGTMDSVLSSREGYGKRPNSALAFPRIEHKETENKPPMEVIVEEGGENKPRKTKLKDLSDKEEGAKEILSPKKHRDRQSISPAKVTSVSLLDKFERNVNGGKIMPSENLSPPGYQRNDNEKPRTSPVPACQDHNKAGQEMCYVCLQRAQRNFPLYYGEDRRRREIEDERLMQQYQILKDQEAVFKNQVKSMAAREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPEINAFKQEEYSQTLLKQMESKREKEIKQRQNRELMDRLEQVQLTEELAAQRAQYLKEKMEETQYYKRALDAQVKNKPSQLPMFEPDSAEPIFGKNEGEMEAEKRKREQSCMKHQMEAAASLKRNTILNQIVDQRRDLQMLQRTQREHLADRAAEADRMNRIHQCLQEDWDRSLSMKRQRDLEEKAFERASDKLFLLDQCEKYRRCRQCQRRTSNVGESNVWPLNKFLQGSRLLV", "length": 654, "header": "tr|A0A8C2MU76-1|A0A8C2MU76_CRIGR Isoform 1 of Coiled-coil domain-containing protein 81 OS=Cricetulus griseus OX=10029 GN=Ccdc81 PE=4 SV=1 CANONICAL=A0A8C2MU76-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762831", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762831", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5XIN9-1", "protein_name": "Coiled-coil domain-containing protein 81", "gene_name": "Ccdc81", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLDRIGPGFQDLCRQVLPTLPSLSQEEVSTIWGNVSDFVERQLTMHKGVQISGLGTFTFTRQQLEMGNKKFVLVQRPVFIMSEKLVQTHGLKQNKVFSPGDIPVVPLNFVMISLEGPFNRDTIEGCVRETLLFLSRSISIKQNVEFTFKGIGVLSIRDNKVKMRFYKDFLSSVDGSGTLTKALANRPGTMDSVLSSRESFGKRPNSALAFPRIEHKETENKPPVEVFGEEGGENRPRKSKLKDQSDKEEGAWEISSAKKHRDRQSISPAKVTSGSLLDKFERSGNGGKITENLSPGGQRNDNEKPKTSPAPACQDHNKAGQEMCYVCLQRAQRNFALYYGDEKRRREIEDERLMQQYQIAKDQEAFFKSQMKSMATREQNQKNAAYNLGVAEAIRSHKNEKPDFYKSFLFDKRPLSPEINAFKQEEYSQSLLKQMESKREKEIKQRQNRELMDRLEQVQLTEELAAQRAQYLKEKMEETQYYKRALDAQVKNKPSQLPMFEPDSAEPIFGKNEGEMEMEKRKREQSCMKHQMEAAANLKRNTILNQLVDQRRDLQMLQRTKREHLADRAAEVDRVNRLNQCLQEDWDRSLAMKKQRDLEEKAFERASDKLFLLDQCEKYRRCRQCQRRTSNTGESNVWPLNKFLQGSRLLV", "length": 651 }, "evidence": [ { "id": "A0A8C2MU76", "url": "https://omabrowser.org/oma/group/A0A8C2MU76/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6ZN84-1", "protein_name": "Coiled-coil domain-containing protein 81", "gene_name": "CCDC81", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLDTIARALQDLGRQVLPTLPSLSQEEVSIIWGNVSEFVRRQLTLHKGVQIPAFGTFTFIRQKLEVGNNKFILIQRPVFIMVEKLVQIHGLKQNKVYTPGEIPIVPLNFVMISLEGPFNRDVVEGCVKETLLFLSRSISMKQNVEFTFKGIGVLMIRDSKVKMRFYKDFLCTMDGSGALAKALANRPGTVDSVLSSREALRKWPSSVLAFPRIELKEMENKLPMETLVEECGENRERKCKLKDQSDKEEGTRDISSPKRLRDRQALFPAKVTNVSLLEKFERSESGGKIMTPESLSYPSCLKHDSEMKPQTSPACQDHNKAGQEMCYVCLQRAQRNSLLYYSEERRREIEDERLIQQYQMLKDQEALFRHQMKSLATREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPALNALKQEEYSRSLLKQMDNRQENEIKQRQYRELMDRLEQVQLTEELAAQRAKFLKDKMEETQCYKRALDAQIKNKPSRLPPFEPDSSEPIFGKNEGELMVEKQKREQNYMKHQLEAAANHKRKAILHQLVDQRRDLQMLQRTQREHLADRTAELERVNRVNQCLQEDWERSAAMKKQRDLEDKAFERASDKLFLLDQCEKYRRCKQCQRRTSNVGESNLWPLNKFLPGSRLLV", "length": 652 }, "evidence": [ { "id": "A0A8C2MU76", "url": "https://omabrowser.org/oma/group/A0A8C2MU76/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D5W4-1", "protein_name": "Coiled-coil domain-containing protein 81", "gene_name": "Ccdc81", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLDRVGPGFQDLCRQVLPTLPTLSQEEVSTIWANVSDFVERQLTMHKGVQISGLGTFTFSRQQLEVGNKKFVLVQRPVFIMAEKLVQTHGLKQNKVFSPGDIPVVPLNFVMISLEGPFNRDTIEGCVKETLLFLSRSISVKQKVEFTFKGIGVLSIRDSKVKMRFYKDFLCSMDGSGILTKALANRPGTMDSVLSSRESYRKRPNSAMAFPRIEHKETENKTPVEVVGEEGGENRPRKIKLKDQSDKEGGAREISSPKKHRERQSISPAKVTSVSLLDKFERSGNGGKITACENLSSPGCQRNDNERPRTSPAPACQDHNKAGQEMCYVCLQRAQRNFALHYGDERRRREIEDERLMQQYQILKDQEAFFKNQVKGMAAREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPEINAFKQEEYSQSLLKQMESKREKEIKQRQNRELMDRLEQVQLTEELAAQRAQYLKEKMEETQHYKRALDAQVKNKPPQLPMFEPDSAEPIFGKNDGEREMEKRKREQSCMKHQMEAAASHKRNTILNQLVDQRRDLQMLQRTQREHMADRAAEMDRVNRLNQCLQEDWDRSLAMKKQRDVEEKAFERASDKLFLLDQCEKYRRCRQCQRRTCNTGESNLWPMNKFLQGSRLLV", "length": 654 }, "evidence": [ { "id": "A0A8C2MU76", "url": "https://omabrowser.org/oma/group/A0A8C2MU76/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MU76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MU76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MU76" }, { "id": "PF14908", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14908" }, { "id": "PF18289", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18289" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCDC81 HU", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 93, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 294, "end_pos": 296 }, { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MUD7-1", "uniprot_ac": "A0A8C2MUD7", "uniprot_id": "A0A8C2MUD7_CRIGR", "mass": { "chemical_mass": 30910.0, "monoisotopic_mass": 30910.0 }, "refseq": { "ac": "XP_003505329", "name": "ankyrin repeat domain-containing protein 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505329" }, "gene_names": [ { "name": "Ankrd7", "type": "recommended", "evidence": [ { "id": "A0A8C2MUD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7" } ] }, { "name": "Ankrd7", "type": "synonym", "evidence": [ { "id": "XP_003505329", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505329" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 7", "type": "synonym", "evidence": [ { "id": "A0A8C2MUD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 7", "type": "synonym", "evidence": [ { "id": "XP_003505329", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505329" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614134.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505329", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505329" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7", "locus": {} } ], "crossref": [ { "id": "100755680", "url": "https://www.ncbi.nlm.nih.gov/gene/100755680", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755680", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755680", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HSCCLLI", "url": "https://omabrowser.org/oma/group/HSCCLLI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MUD7", "url": "https://www.orthodb.org/?gene=A0A8C2MUD7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003505329", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505329", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MUD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLFSFRKKGKTDQSHSYFSDLSVSGASPTPSLSTGGRHRRQDKHSKKLHKAASVGNVQKLKVYLERRKHDVNGQDKRNRTPLHLACANGYANIVSLLIENHCKINVQDSKNRTPLMKAVQCQQENCATILLQHGANPNLVDFYNNTALHYAACGKNISLAKKLLGYKANLEAKNKDGYTPLLLAIAENNENMVKFLLKKGADVNASDNKHRTAIMIALIAEPTSSVTLLLQQNTDLTCKDIYGFTAEEYASFNAFTTFHQILANNGNKKKTKSTAY", "length": 278, "header": "tr|A0A8C2MUD7-1|A0A8C2MUD7_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 7 OS=Cricetulus griseus OX=10029 GN=Ankrd7 PE=4 SV=1 CANONICAL=A0A8C2MUD7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7/entry", "sequence": { "sequence": "MKKLFSFRKKGKTDQSHSYFSDLSVSGASPTPSLSTGGRHRRQDKHSKKLHKAASVGNVQKLKVYLERRKHDVNGQDKRNRTPLHLACANGYANIVSLLIENHCKINVQDSKNRTPLMKAVQCQQENCATILLQHGANPNLVDFYNNTALHYAACGKNISLAKKLLGYKANLEAKNKDGYTPLLLAIAENNENMVKFLLKKGADVNASDNKHRTAIMIALIAEPTSSVTLLLQQNTDLTCKDIYGFTAEEYASFNAFTTFHQILANNGNKKKTKSTAY", "length": 278, "header": "tr|A0A8C2MUD7-1|A0A8C2MUD7_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 7 OS=Cricetulus griseus OX=10029 GN=Ankrd7 PE=4 SV=1 CANONICAL=A0A8C2MUD7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 31, "start_aa": "Thr", "end_pos": 31, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr31", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUD7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUD7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755680", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KA76-1", "protein_name": "Ankyrin repeat domain 7", "gene_name": "Ankrd7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKLFPFREKRKTDDSHSHSSDLSISLASTMPSLSTGGGYHLRDKPLKKLHKAASVGNVQKLKDYLERKKYDVNGRDKRSRTPLHFACANGYTNIVSLLIENQCKINVQDSENRTPLIKQAAECQQESCATLLLHHGADPNLGDIYGNTALHYAVYGQNISLANKLLDYKANLEAKNKDGYTPLLLAVAENNENMVKFLLKKGADVNASDKNHRTAIMIALIVEPTNSVKLLLQQDADLACEDIYGFTAEEYASFNGFTMYHQLIANNEKKKKTEQTAH", "length": 279 }, "evidence": [ { "id": "A0A8C2MUD7", "url": "https://omabrowser.org/oma/group/A0A8C2MUD7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q92527-1", "protein_name": "Ankyrin repeat domain-containing protein 7", "gene_name": "ANKRD7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNKLFSFWKRKNETRSQGYNLREKDLKKLHRAASVGDLKKLKEYLQIKKYDVNMQDKKYRTPLHLACANGHTDVVLFLIEQQCKINVRDSENKSPLIKAVQCQNEDCATILLNFGADPDLRDIRYNTVLHYAVCGQSLSLVEKLLEYEADLEAKNKDGYTPLLVAVINNNPKMVKFLLEKGADVNASDNYQRTALILAVSGEPPCLVKLLLQQGVELCYEGIVDSQLRNMFISMVLLHRYPQFTASHGKKKHAK", "length": 254 }, "evidence": [ { "id": "A0A8C2MUD7", "url": "https://omabrowser.org/oma/group/A0A8C2MUD7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D504-1", "protein_name": "Ankyrin repeat domain-containing protein 7", "gene_name": "Ankrd7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKFFPFRGKRKTDDSHSHSSEVPISLAKTAPPSLSIGGGYHLRDKHLKKLHKAATIGNEQKLKDYLERKKYNVNGRDKRSRTPLHLACANGYTNIVSLLIENQCKINVQDSENRTPLIKAVECQQESCATVLLLHGADPNLVDVYSNTALHYAVCGQNISLANKLLQYKANLEAKNKDGHTPLLLAVAENNENMVKFLLKKGADVNASDKNHRTAIMIALIVEPTSSVKLLLQQDTDLAHKDIYGFTAEEYASFNGFTMYHHITANNENKKKTEQTAY", "length": 279 }, "evidence": [ { "id": "A0A8C2MUD7", "url": "https://omabrowser.org/oma/group/A0A8C2MUD7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256879" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUF1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUF1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem181", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUF1", "locus": {} } ], "crossref": [ { "id": "100762829", "url": "https://www.ncbi.nlm.nih.gov/gene/100762829", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040416", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040416", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762829", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762829", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MUF1", "url": "https://www.orthodb.org/?gene=A0A8C2MUF1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31918", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31918", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31918:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31918:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256879", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MUF1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPLAPMRLYTLSKRHFVLVFVVFFICFGLTVFVGIEGPKVIQTSAANFSLNNSKKLKPIQIHSNPLSTYNQQLWLTCVVELEPSEETSIKTSFSMTVKVNGVAQDGTTIYIHNKVHNRTRMLSCAGKCAEIIVAHLGYLNYTQYTVTVGFEHLNQPIKEMNFTWKTYNPAFSQLELWFRFVFVVLTFIVTCLFAHSLRKFSMRDWGIEQKWMSVLLPLLLLYNDPFFPLSFLVNSWLPGMLDDFFQSLFLCALLLFWLCVYHGIRVQGERKCLTFYLPKFFIVGLLWLASVTLGIWQTINELHDPMYQYRVDTGNFQGMKVFFMVVAALYVLYLLFLIVRACSELRHMPYVDLRLKFLTALTFVVLVISIIILYLRFGAQVLQDNFVAELSAHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDDVIYGSDYEEMPLQNGQAIRAKYKEESDSD", "length": 475, "header": "tr|A0A8C2MUF1-1|A0A8C2MUF1_CRIGR Isoform 1 of Transmembrane protein 181 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem181 PE=4 SV=1 CANONICAL=A0A8C2MUF1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUF1/entry", "sequence": { "sequence": "MEPLAPMRLYTLSKRHFVLVFVVFFICFGLTVFVGIEGPKVIQTSAANFSLNNSKKLKPIQIHSNPLSTYNQQLWLTCVVELEPSEETSIKTSFSMTVKVNGVAQDGTTIYIHNKVHNRTRMLSCAGKCAEIIVAHLGYLNYTQYTVTVGFEHLNQPIKEMNFTWKTYNPAFSQLELWFRFVFVVLTFIVTCLFAHSLRKFSMRDWGIEQKWMSVLLPLLLLYNDPFFPLSFLVNSWLPGMLDDFFQSLFLCALLLFWLCVYHGIRVQGERKCLTFYLPKFFIVGLLWLASVTLGIWQTINELHDPMYQYRVDTGNFQGMKVFFMVVAALYVLYLLFLIVRACSELRHMPYVDLRLKFLTALTFVVLVISIIILYLRFGAQVLQDNFVAELSAHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDDVIYGSDYEEMPLQNGQAIRAKYKEESDSD", "length": 475, "header": "tr|A0A8C2MUF1-1|A0A8C2MUF1_CRIGR Isoform 1 of Transmembrane protein 181 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem181 PE=4 SV=1 CANONICAL=A0A8C2MUF1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 148, "start_aa": "Thr", "end_pos": 148, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr148", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614148.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505447", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505447" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUG9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lhfpl1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUG9", "locus": {} } ], "crossref": [ { "id": "100753727", "url": "https://www.ncbi.nlm.nih.gov/gene/100753727", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753727", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753727", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VMQTCGN", "url": "https://omabrowser.org/oma/group/VMQTCGN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MUG9", "url": "https://www.orthodb.org/?gene=A0A8C2MUG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12489:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12489:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10242", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10242", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003505447", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505447", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MUG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSSLTLVGTFWAFLSLVTAVASSTSYFLPYWLFGSQLGKPVSFSTFRRCNYPVRGDGHNLIMVEECGRYASFTAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRCMGAAQFVGGLLISSGCALYPLGWNSPEVMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAAMLICTWLSCFAGRNPKPVMLVESIMRNTNSYAMELDHCLKP", "length": 220, "header": "tr|A0A8C2MUG9-1|A0A8C2MUG9_CRIGR Isoform 1 of LHFPL tetraspan subfamily member 1 protein OS=Cricetulus griseus OX=10029 GN=Lhfpl1 PE=4 SV=1 CANONICAL=A0A8C2MUG9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUG9/entry", "sequence": { "sequence": "MRSSLTLVGTFWAFLSLVTAVASSTSYFLPYWLFGSQLGKPVSFSTFRRCNYPVRGDGHNLIMVEECGRYASFTAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRCMGAAQFVGGLLISSGCALYPLGWNSPEVMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAAMLICTWLSCFAGRNPKPVMLVESIMRNTNSYAMELDHCLKP", "length": 220, "header": "tr|A0A8C2MUG9-1|A0A8C2MUG9_CRIGR Isoform 1 of LHFPL tetraspan subfamily member 1 protein OS=Cricetulus griseus OX=10029 GN=Lhfpl1 PE=4 SV=1 CANONICAL=A0A8C2MUG9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUG9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUG9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753727", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753727", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BI07-1", "protein_name": "LHFPL tetraspan subfamily member 1", "gene_name": "LHFPL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTTFCIWRCEPTHLPIPTEKPGTMRSSLTLVGTLWAFLSLVTAVASSTSYFLPYWLFGSQLGKPVSFSTFRRCNYPVRGEGQSLIMVEECGRYASFSAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRCMGAAQFVGGLLISSGCALYPLGWNSPEIMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAAMLICTWLSCFAGRNPKPVMLVESIMRNTNSYTMELDHCLKP", "length": 243 }, "evidence": [ { "id": "A0A8C2MUG9", "url": 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253931", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253931" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUP6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759379", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6", "locus": {} } ], "crossref": [ { "id": "100759379", "url": "https://www.ncbi.nlm.nih.gov/gene/100759379", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013094", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013094", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759379", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759379", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MUP6", "url": "https://www.orthodb.org/?gene=A0A8C2MUP6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48081", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48081", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48081:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48081:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07859", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07859", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253931", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253931", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MUP6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVLWLVLLASLSAFNLGVFLWAVIQHFLNVEIPSSLKHPVKLRFLHCVMLYIIAVGNILEKLRICSMPRFIQSFHDLIVTKKNHNLVVTNMNFGTIPVRLFQPKAVSSKLRRGIIFCHGGGTICGSLDCYHNLCSCLAQETDSVVLSVGYRKLPDHHHPSVSKDCLNASIYFMKGLTTYGVDPSRVVVCGESVGGGILATVIQALFSFPSLPKICAQVLITPVMQLINFRLPSHQQNQNVPLLTKDIIMMSLCKYVDIDLSWKDAIFNGTCIPPDFWKKYRKWLSSDNIPRRFKSKSLLPESPGPFNETAYLETKQVLDAEISPLLIDDKIIAQLPQAFLVSCENDPLRDDTLLYKKRLEDQGVPVTWYHVEDGFHGCIILFDKQPFSFPCSMKIVDAVITYIKGI", "length": 407, "header": "tr|A0A8C2MUP6-1|A0A8C2MUP6_CRIGR Isoform 1 of Arylacetamide deacetylase-like 4 OS=Cricetulus griseus OX=10029 GN=LOC100759379 PE=4 SV=1 CANONICAL=A0A8C2MUP6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6/entry", "sequence": { "sequence": "MTVLWLVLLASLSAFNLGVFLWAVIQHFLNVEIPSSLKHPVKLRFLHCVMLYIIAVGNILEKLRICSMPRFIQSFHDLIVTKKNHNLVVTNMNFGTIPVRLFQPKAVSSKLRRGIIFCHGGGTICGSLDCYHNLCSCLAQETDSVVLSVGYRKLPDHHHPSVSKDCLNASIYFMKGLTTYGVDPSRVVVCGESVGGGILATVIQALFSFPSLPKICAQVLITPVMQLINFRLPSHQQNQNVPLLTKDIIMMSLCKYVDIDLSWKDAIFNGTCIPPDFWKKYRKWLSSDNIPRRFKSKSLLPESPGPFNETAYLETKQVLDAEISPLLIDDKIIAQLPQAFLVSCENDPLRDDTLLYKKRLEDQGVPVTWYHVEDGFHGCIILFDKQPFSFPCSMKIVDAVITYIKGI", "length": 407, "header": "tr|A0A8C2MUP6-1|A0A8C2MUP6_CRIGR Isoform 1 of Arylacetamide deacetylase-like 4 OS=Cricetulus griseus OX=10029 GN=LOC100759379 PE=4 SV=1 CANONICAL=A0A8C2MUP6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUP6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUP6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759379", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759379", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUP6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MUP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUP6" }, { "id": "PF07859", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07859" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Alpha/beta hydrolase fold-3", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 269, "start_aa": "Ile", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 269, "end_pos": 271 }, { "start_pos": 308, "end_pos": 310 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MUS8-1", "uniprot_ac": "A0A8C2MUS8", "uniprot_id": "A0A8C2MUS8_CRIGR", "mass": { "chemical_mass": 87939.0, "monoisotopic_mass": 87939.0 }, "refseq": { "ac": "XP_007645476", "name": "tetratricopeptide repeat protein 14 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645476" }, "gene_names": [ { "name": "Ttc14", "type": "recommended", "evidence": [ { "id": "A0A8C2MUS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUS8" } ] }, { "name": "Ttc14", "type": "synonym", "evidence": [ { "id": "XP_007645476", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645476" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 14 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2MUS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUS8/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 14 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007645476", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645476" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 255 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614281.1) and transcript sequence (IACG01054465.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007645476.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645476", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645476" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUS8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUS8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttc14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUS8", "locus": {} } ], "crossref": [ { "id": "cd00164", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00164", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750788", "url": "https://www.ncbi.nlm.nih.gov/gene/100750788", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750788", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750788", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MUS8", "url": "https://www.orthodb.org/?gene=A0A8C2MUS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23184:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23184:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645476", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645476", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MUS8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QMJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QMJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRDLLRQSLGCHGPALLSLLRSEQQDNPHFRSLLGTAAEPARGAAPPQGAGRKEKRVDNIEIQKFISKKADLLFALSWKSDAPTPSEVHDDNDNHYAVMPPLEQFMEIPSMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDISHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPQMSSIKLGVITSEELPLYYRRSVELNSNSLESYENIMQSSLGFVNPGVVEFLLEKLGIDESHPPSLMRGLQSKNFSEDDFALALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAEDALQKLHKHMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRKSSSSSSSVSSADESVSSSSSSSSSSHKRHKKSKRNRSESSRSSKRHWSKTSSSHLDQNRKDDCYPVPTNTSASFLNQKQEVEKLLEKQDRLQCPSTQVKERERCLLTSSGEVPDGSGGRSEDTRDFYNSYKTQAGSSKTEKPYKSERYFSSRRNSSDSFCRNSEDKMKASSYRRFEKDTEGRKDHTRRWEPGSVKYSTSPASSDYSWKSLEKHKKYAYSGSRDSRHEQRYQLNTNQGERAYEKEDSSGEGNKTEAPEETLNSKEQPENRVKKNLPQNLLNIFNQIAEFEKEKGNKPKK", "length": 771, "header": "tr|A0A8C2MUS8-1|A0A8C2MUS8_CRIGR Isoform 1 of Tetratricopeptide repeat protein 14 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ttc14 PE=4 SV=1 CANONICAL=A0A8C2MUS8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUS8/entry", "sequence": { "sequence": "MDRDLLRQSLGCHGPALLSLLRSEQQDNPHFRSLLGTAAEPARGAAPPQGAGRKEKRVDNIEIQKFISKKADLLFALSWKSDAPTPSEVHDDNDNHYAVMPPLEQFMEIPSMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDISHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPQMSSIKLGVITSEELPLYYRRSVELNSNSLESYENIMQSSLGFVNPGVVEFLLEKLGIDESHPPSLMRGLQSKNFSEDDFALALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAEDALQKLHKHMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRKSSSSSSSVSSADESVSSSSSSSSSSHKRHKKSKRNRSESSRSSKRHWSKTSSSHLDQNRKDDCYPVPTNTSASFLNQKQEVEKLLEKQDRLQCPSTQVKERERCLLTSSGEVPDGSGGRSEDTRDFYNSYKTQAGSSKTEKPYKSERYFSSRRNSSDSFCRNSEDKMKASSYRRFEKDTEGRKDHTRRWEPGSVKYSTSPASSDYSWKSLEKHKKYAYSGSRDSRHEQRYQLNTNQGERAYEKEDSSGEGNKTEAPEETLNSKEQPENRVKKNLPQNLLNIFNQIAEFEKEKGNKPKK", "length": 771, "header": "tr|A0A8C2MUS8-1|A0A8C2MUS8_CRIGR Isoform 1 of Tetratricopeptide repeat protein 14 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ttc14 PE=4 SV=1 CANONICAL=A0A8C2MUS8-1" }, "locus": {} }, { 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}, { "name": "zinc finger CCHC domain-containing protein 24 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003503305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503305" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 186 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613953.1) and transcript sequence (IACG01055452.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003503305.1. 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"MDQSSPTYMLANLTHLHSEQLLQGLNLLRQHHELCDIILRVGDVKIHAHKVVLASISPYFKAMFTGNLSEKENSEVEFQCVDEAALQAIVEYAYTGTVFISQDTVESLLPAANLLQIKLVVKECCAFLESQLDPGNCIGISRFAETYGCHDLYLAANKYICQNFEDVCQTEEFFELTHSELDEIVSNDCLNVVTEETVFYALESWIKYDVQERQKYLAQLLHCVRLPLLSVKFLTRLYEANHLIRDDHTCKHLLNEALKYHFMPEHRLSHQTMLMTRPRCAPKVLCAVGGKAGLFACLESVEMYFPQNDSWIGLAPLSIPRYEFGICVLDQKIYVVGGIATHVCQGISYRKHENSVECWDPDTNTWTSLERMFESRSTLGVVVLAGELYALGGYDGQSYLRTVEKYIPKVKEWQLVAPMNKTRSCFAAAVLDGMIYAIGGYGPAHMNSMERYDPSKNSWETVASMADKRINFGVGVMLGFIFVVGGHNGVSHLSSIERYDPHQNQWTVCRPMKEPRTGVGAAVIDNYLYVVGGHSGSSYLNTVQKYDPISDTWLDSAGMMYCRCNFGLTAL", "length": 571 }, "evidence": [ { "id": "A0A8C2MV16", "url": "https://omabrowser.org/oma/group/A0A8C2MV16/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4AC05-1", "protein_name": "Kelch-like family member 28", "gene_name": "Klhl28", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 308, "end_pos": 310 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MV98-1", "uniprot_ac": "A0A8C2MV98", "uniprot_id": "A0A8C2MV98_CRIGR", "mass": { "chemical_mass": 15005.0, "monoisotopic_mass": 15005.0 }, "refseq": { "ac": "XP_027274644", "name": "protein stum homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274644" }, "gene_names": [ { "name": "LOC113836092", "type": "recommended", "evidence": [ { "id": "A0A8C2MV98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV98" } ] }, { "name": "LOC113836092", "type": "synonym", "evidence": [ { "id": "XP_027274644", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274644" } ] } ], "protein_names": [ { "name": "Protein stum homolog", "type": "synonym", "evidence": [ { "id": "A0A8C2MV98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV98/entry#names_and_taxonomy" } ] }, { "name": "protein stum homolog", "type": "synonym", "evidence": [ { "id": "XP_027274644", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274644" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274644", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274644" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MV98", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV98" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836092", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV98", "locus": {} } ], "crossref": [ { "id": "113836092", "url": "https://www.ncbi.nlm.nih.gov/gene/113836092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026673", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026673", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836092", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836092", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MV98", "url": "https://www.orthodb.org/?gene=A0A8C2MV98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21676", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21676", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21676:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21676:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274644", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274644", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MV98", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MV98-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPLHKDAETAAAAAAVAAADPRGASSSSGVVVQVREKKGPLRAAIPYMPFPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAALIQVLTAIVMVGWIMSIFWGMDMVILAISQGYKDQGIPQQL", "length": 141, "header": "tr|A0A8C2MV98-1|A0A8C2MV98_CRIGR Isoform 1 of Protein stum homolog OS=Cricetulus griseus OX=10029 GN=LOC113836092 PE=4 SV=1 CANONICAL=A0A8C2MV98-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MV98-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV98/entry", "sequence": { "sequence": "MEPLHKDAETAAAAAAVAAADPRGASSSSGVVVQVREKKGPLRAAIPYMPFPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAALIQVLTAIVMVGWIMSIFWGMDMVILAISQGYKDQGIPQQL", "length": 141, "header": "tr|A0A8C2MV98-1|A0A8C2MV98_CRIGR Isoform 1 of Protein stum homolog OS=Cricetulus griseus OX=10029 GN=LOC113836092 PE=4 SV=1 CANONICAL=A0A8C2MV98-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MYU5-1", "uniprot_ac": "A0A8C2MYU5", "uniprot_id": "A0A8C2MYU5_CRIGR", "mass": { "chemical_mass": 37800.0, "monoisotopic_mass": 37800.0 }, "refseq": { "ac": "XP_003495096", "name": "BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495096" }, "gene_names": [ { "name": "Bnip2", "type": "recommended", "evidence": [ { "id": "A0A8C2MYU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5" } ] }, { "name": "Bnip2", "type": "synonym", "evidence": [ { "id": "XP_003495096", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495096" } ] } ], "protein_names": [ { "name": "BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495096", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495096" }, { "id": "A0A8C2MYU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 253 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613582.1) and transcript sequence (IACG01001367.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003495096.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495096", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495096" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYU5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bnip2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5", "locus": {} } ], "crossref": [ { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750620", "url": "https://www.ncbi.nlm.nih.gov/gene/100750620", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750620", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750620", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SWYRTKK", "url": "https://omabrowser.org/oma/group/SWYRTKK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MYU5", "url": "https://www.orthodb.org/?gene=A0A8C2MYU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12112:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12112:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495096", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495096", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MVC8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MVC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MYU5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MYU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGVELKEEWQDEDFPIPLPEDDSIEADILDVTGPDSQPGSLEVNGNKVRKKLMAPDISLTLDPSEDSVWSDDLDEGGEVDLEGLDTPSENSDEFEWEDDLPKPKTTEVIRKDSVTEYTATEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPSLGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQYEEEKFKKRQKRVDQELNGKQEPPNSEQ", "length": 326, "header": "tr|A0A8C2MYU5-1|A0A8C2MYU5_CRIGR Isoform 1 of BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bnip2 PE=4 SV=1 CANONICAL=A0A8C2MYU5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MVC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVC8/entry", "sequence": { "sequence": "MEGVELKEEWQDEDFPIPLPEDDSIEADILDVTGPDSQPGSLEVNGNKVRKKLMAPDISLTLDPSEDSVWSDDLDEGGEVDLEGLDTPSENSDEFEWEDDLPKPKTTEVIRKDSVTEYTATEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPSLGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNGKQEPPNSEQ", "length": 314, "header": "tr|A0A8C2MVC8-1|A0A8C2MYU5_CRIGR Computationally mapped isoform of BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bnip2 PE=4 SV=1 CANONICAL=A0A8C2MYU5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MYU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5/entry", "sequence": { "sequence": "MEGVELKEEWQDEDFPIPLPEDDSIEADILDVTGPDSQPGSLEVNGNKVRKKLMAPDISLTLDPSEDSVWSDDLDEGGEVDLEGLDTPSENSDEFEWEDDLPKPKTTEVIRKDSVTEYTATEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPSLGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQYEEEKFKKRQKRVDQELNGKQEPPNSEQ", "length": 326, "header": "tr|A0A8C2MYU5-1|A0A8C2MYU5_CRIGR Isoform 1 of BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bnip2 PE=4 SV=1 CANONICAL=A0A8C2MYU5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVC8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVC8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVC8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVC8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750620", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750620", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AVU1-1", "protein_name": "BCL2 interacting protein 2", "gene_name": "Bnip2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGVELKEEWQDEDFPIPLPEDDSIEADILDVTDPDRQPGSLEVNGNKVRKKLVAPDISLTLDPGEDSLWSDDLDEGGEVDLDGLDTPSENSDEFEWEDDLPKPKTTEVIRKGSITEYAATEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPSLGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNGKQEPPKSEQ", "length": 314 }, "evidence": [ { "id": "A0A8C2MYU5", "url": "https://omabrowser.org/oma/group/A0A8C2MYU5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NEC1-1", "protein_name": "BCL2 interacting protein 2", "gene_name": "BNIP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEGVEFKEEWQDEDFPRPLPEDDPVDSDILAAAGTEGEIAVNGTKVRKKLTAPDISLTLDRSEESVLSDLDESGDIDLDDIDTPSENSNEFEWEDDLPKPKTTDVIRKGSLTEYTAAEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSIGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAITKPFISSKFSQKIRYVFTLAELAELIPMEYVGIPECIKQYEEEKFRKKQTRVDQELNGKQEQKSEQ", "length": 321 }, "evidence": [ { "id": "A0A8C2MYU5", "url": "https://omabrowser.org/oma/group/A0A8C2MYU5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1QHC0-1", "protein_name": "BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform X1", "gene_name": "bnip2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATDVILSSGEVSNQSDMNANRTDPESDTPNRTSESPENRNISSATSLSTSSVRTGEDEPHEDSGTGISVANGNRAGDPQQETENTAETPDNRQKQGVRTSTPVRLPHTSAGQHNGSFEHQESVATTEARLRMEGVELKEEWQDEDFPRPLPEEEDIHLDEELYTGEGAPASQSYGLHSGKKTKRKLLAPDISLNLDHSEGSVLSDELDESTELDLDDIDTPSDNSNEFEWEDDLPKPKSADLLRKGVESVQEYSTSEEREEGRRWRVFRIGDQEHRVDMKAIEPYKKVISHGGYYGDGLNAIIVFAVCFMPESNQPNYRYIMDNLFKYVIGTLELLVAENYMIVYLNGATSRRKMPSVGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLALTKPFISSKFSQKIKFVFSLTDLAELVPMEYVSIPDCIKQFDEEKNRKKHKRIDRDMHGKVEIATAAVPE", "length": 464 }, "evidence": [ { "id": "A0A8C2MYU5", "url": "https://omabrowser.org/oma/group/A0A8C2MYU5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O54940-1", "protein_name": "BCL2/adenovirus E1B 19 kDa protein-interacting protein 2", "gene_name": "Bnip2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGVELKEEWQDEDFPIPLPEDDSIEADTLDGTDPDRQPGSLEVNGNKVRKKLMAPDISLTLDPGEDSLWSDDLDEAGEVDLEGLDTPSENSDEFEWEDDLPKPKTTEVIRKGSITEYTATEEKGDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPSLGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQYEEEKFKKRQKRVDQELNGKQEPPKSEQ", "length": 326 }, "evidence": [ { "id": "A0A8C2MYU5", "url": "https://omabrowser.org/oma/group/A0A8C2MYU5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q12982-1", "protein_name": "BCL2/adenovirus E1B 19 kDa protein-interacting protein 2", "gene_name": "BNIP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQPGSLEVNGNKVRKKLMAPDISLTLDPSDGSVLSDDLDESGEIDLDGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYTAAEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQELNGKQDEPKNEQ", "length": 314 }, "evidence": [ { "id": "A0A8C2MYU5", "url": "https://omabrowser.org/oma/group/A0A8C2MYU5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYU5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYU5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MYU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYU5" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 147, "end_pos": 304, "start_aa": "Ile", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"MAENADGDLNSNLLHAPYLTGDPQLDTAIGQWLRWDKNPKTKEQIENLLRNGMNKELRDRLCCRMTFGTAGLRSAMGAGFCYINDLTVIQSTQGMYKYLERCFSDFKQRGFVVGYDTRGQVTSSCSSHRLAKLTAAVLLAKGVPVYLFSRYVPTPFVPYAVQELKAVAGVMITASHNRKEDNGYKVYWETGAQITSPHDKEILKCIEECVEPWNGSWNDNLVDTSPLKKDPLQDICKRYMEDLKKICFHRDLNSKTTLKFVHTSFHGVGHDYVQLAFQVFGFKPPIPVPEQKDPDPEFSTVKCPNPEEGESVLELSLRLAEKENARIVLATDPDADRLAVAELQENGHWKVFTGNELAALFGWWMFDCWKENKSNADVKNVYMLATTVSSKILKAIALKEGFHFEETLPGFKWIGSRIKDLLGHGKEVLFAFEESIGFLCGTSVLDKDGVSAAVVVAEMASFLETRKVTLTEQLSKVYEKYGYHMSKTSYFLCYDPPTIKTIFERIRNFESPKEYPKFCGAFAILHVRDITTGYDSSQPNKKSVLPVSKNSQMITFTFQNGCVATLRTSGTEPKIKYYAEMCASPGQSDTALLEEELKKLIDALIENFLEPSKNGLIWRSV", "length": 621, "header": "tr|A0A8C2MVJ9-1|A0A8C2MVJ9_CRIGR Isoform 1 of Glucose 1,6-bisphosphate synthase isoform X3 OS=Cricetulus griseus OX=10029 GN=Pgm2l1 PE=3 SV=1 CANONICAL=A0A8C2MVJ9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MVJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9/entry", "sequence": { "sequence": "MAENADGDLNSNLLHAPYLTGDPQLDTAIGQWLRWDKNPKTKEQIENLLRNGMNKELRDRLCCRMTFGTAGLRSAMGAGFCYINDLTVIQSTQGMYKYLERCFSDFKQRGFVVGYDTRGQVTSSCSSHRLAKLTAAVLLAKGVPVYLFSRYVPTPFVPYAVQELKAVAGVMITASHNRKEDNGYKVYWETGAQITSPHDKEILKCIEECVEPWNGSWNDNLVDTSPLKKDPLQDICKRYMEDLKKICFHRDLNSKTTLKFVHTSFHGVGHDYVQLAFQVFGFKPPIPVPEQKDPDPEFSTVKCPNPEEGESVLELSLRLAEKENARIVLATDPDADRLAVAELQENGHWKVFTGNELAALFGWWMFDCWKENKSNADVKNVYMLATTVSSKILKAIALKEGFHFEETLPGFKWIGSRIKDLLGHGKEVLFAFEESIGFLCGTSVLDKDGVSAAVVVAEMASFLETRKVTLTEQLSKVYEKYGYHMSKTSYFLCYDPPTIKTIFERIRNFESPKEYPKFCGAFAILHVRDITTGYDSSQPNKKSVLPVSKNSQMITFTFQNGCVATLRTSGTEPKIKYYAEMCASPGQSDTALLEEELKKLIDALIENFLEPSKNGLIWRSV", "length": 621, "header": "tr|A0A8C2MVJ9-1|A0A8C2MVJ9_CRIGR Isoform 1 of Glucose 1,6-bisphosphate synthase isoform X3 OS=Cricetulus griseus OX=10029 GN=Pgm2l1 PE=3 SV=1 CANONICAL=A0A8C2MVJ9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDE7/entry", "sequence": { "sequence": "MYKYLERCFSDFKQRGFVVGYDTRGQVTSSCSSHRLAKLTAAVLLAKGVPVYLFSRYVPTPFVPYAVQELKAVAGVMITASHNRKEDNGYKVYWETGAQITSPHDKEILKCIEECVEPWNGSWNDNLVDTSPLKKDPLQDICKRYMEDLKKICFHRDLNSKTTLKFVHTSFHGVGHDYVQLAFQVFGFKPPIPVPEQKDPDPEFSTVKCPNPEEGESVLELSLRLAEKENARIVLATDPDADRLAVAELQENGHWKVFTGNELAALFGWWMFDCWKENKSNADVKNVYMLATTVSSKILKAIALKEGFHFEETLPGFKWIGSRIKDLLGHGKEVLFAFEESIGFLCGTSVLDKDGVSAAVVVAEMASFLETRKVTLTEQLSKVYEKYGYHMSKTSYFLCYDPPTIKTIFERIRNFESPKEYPKFCGAFAILHVRDITTGYDSSQPNKKSVLPVSKNSQMITFTFQNGCVATLRTSGTEPKIKYYAEMCASPGQSDTALLEEELKKLIDALIENFLEPSKNGLIWRSV", "length": 527, "header": "tr|A0A9J7JDE7-1|A0A9J7JDE7_CRIGR Computationally mapped isoform of Glucose 1,6-bisphosphate synthase isoform X2 OS=Cricetulus griseus OX=10029 GN=Pgm2l1 PE=3 SV=1 CANONICAL=A0A8C2MVJ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767063", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767063", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" }, { "name": "phosphoglucomutase activity", "id": "GO:0004614", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004614", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" }, { "name": "glucose-1,6-bisphosphate synthase activity", "id": "GO:0047933", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047933", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" }, { "name": "intramolecular phosphotransferase activity", "id": "GO:0016868", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016868", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glucose metabolic process", "id": "GO:0006006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006006", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" }, { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVJ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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"o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 372, "end_pos": 374 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MVS1-1", "uniprot_ac": "A0A8C2MVS1", "uniprot_id": "A0A8C2MVS1_CRIGR", "mass": { "chemical_mass": 6348.0, "monoisotopic_mass": 6348.0 }, "refseq": { "ac": "XP_027266364", "name": "putative transmembrane protein SPTY2D1OS", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266364" }, "gene_names": [ { "name": "Spty2d1os", "type": "recommended", "evidence": [ { "id": "A0A8C2MVS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1" } ] }, { "name": "Spty2d1os", "type": "synonym", "evidence": [ { "id": "XP_027266364", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266364" } ] } ], "protein_names": [ { "name": "Transmembrane protein SPTY2D1OS", "type": "synonym", "evidence": [ { "id": "A0A8C2MVS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1/entry#names_and_taxonomy" } ] }, { "name": "putative transmembrane protein SPTY2D1OS", "type": "synonym", "evidence": [ { "id": "XP_027266364", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266364" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266364", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266364" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spty2d1os", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1", "locus": {} } ], "crossref": [ { "id": "cge:113835122", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835122", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CYLGAFP", "url": "https://omabrowser.org/oma/group/CYLGAFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MVS1", "url": "https://www.orthodb.org/?gene=A0A8C2MVS1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027266364", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266364", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MVS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MVS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIVLGWMLFVGLASYMGTFPEAMPPTLKWKERLPVWENKARRRSQALEEELLLL", "length": 54, "header": "tr|A0A8C2MVS1-1|A0A8C2MVS1_CRIGR Isoform 1 of Transmembrane protein SPTY2D1OS OS=Cricetulus griseus OX=10029 GN=Spty2d1os PE=4 SV=1 CANONICAL=A0A8C2MVS1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MVS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1/entry", "sequence": { "sequence": "MIVLGWMLFVGLASYMGTFPEAMPPTLKWKERLPVWENKARRRSQALEEELLLL", "length": 54, "header": "tr|A0A8C2MVS1-1|A0A8C2MVS1_CRIGR Isoform 1 of Transmembrane protein SPTY2D1OS OS=Cricetulus griseus OX=10029 GN=Spty2d1os PE=4 SV=1 CANONICAL=A0A8C2MVS1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016829933", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829933" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sh3bgrl2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS9", "locus": {} } ], "crossref": [ { "id": "cd03030", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752409", "url": "https://www.ncbi.nlm.nih.gov/gene/100752409", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051033", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051033", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752409", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752409", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MYKNIPK", "url": "https://omabrowser.org/oma/group/MYKNIPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MVS9", "url": "https://www.orthodb.org/?gene=A0A8C2MVS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12232:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12232:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04908", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04908", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016829933", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829933", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MVS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MVS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVRVFVASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYNNIPPEKKPAQGNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLKPRPASTTEP", "length": 107, "header": "tr|A0A8C2MVS9-1|A0A8C2MVS9_CRIGR Isoform 1 of SH3 domain-binding glutamic acid-rich-like protein OS=Cricetulus griseus OX=10029 GN=Sh3bgrl2 PE=3 SV=1 CANONICAL=A0A8C2MVS9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MVS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVS9/entry", "sequence": { "sequence": "MVVRVFVASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYNNIPPEKKPAQGNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLKPRPASTTEP", "length": 107, "header": "tr|A0A8C2MVS9-1|A0A8C2MVS9_CRIGR Isoform 1 of SH3 domain-binding glutamic acid-rich-like protein OS=Cricetulus griseus OX=10029 GN=Sh3bgrl2 PE=3 SV=1 CANONICAL=A0A8C2MVS9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003616891.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514776", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514776" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVV2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVV2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nrgn", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVV2", "locus": {} } ], "crossref": [ { "id": "100769932", "url": "https://www.ncbi.nlm.nih.gov/gene/100769932", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769932", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769932", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RPQESAC", "url": "https://omabrowser.org/oma/group/RPQESAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10699", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10699", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10699:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10699:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514776", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514776", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MVV2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MVV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDCCTESACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGECGRKGPGPGGPGGAGGARGGAGGGPSGD", "length": 78, "header": "tr|A0A8C2MVV2-1|A0A8C2MVV2_CRIGR Isoform 1 of Neurogranin OS=Cricetulus griseus OX=10029 GN=Nrgn PE=4 SV=1 CANONICAL=A0A8C2MVV2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MVV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVV2/entry", "sequence": { "sequence": "MDCCTESACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGECGRKGPGPGGPGGAGGARGGAGGGPSGD", "length": 78, "header": "tr|A0A8C2MVV2-1|A0A8C2MVV2_CRIGR Isoform 1 of Neurogranin OS=Cricetulus griseus OX=10029 GN=Nrgn PE=4 SV=1 CANONICAL=A0A8C2MVV2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613664.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497834" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVX3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVX3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "R3hcc1l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVX3", "locus": {} } ], "crossref": [ { "id": "100767534", "url": "https://www.ncbi.nlm.nih.gov/gene/100767534", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767534", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767534", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LCIKYEP", "url": "https://omabrowser.org/oma/group/LCIKYEP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MVX3", "url": "https://www.orthodb.org/?gene=A0A8C2MVX3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21678:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21678:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003497834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497834", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MVX3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MVX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQEAERCRARTKRPDMALYVPKARRGTEVLKAGDKEESCRPPEGCLPQKISGNKPESHRLSGHSDRKECDSREGKRSSSKLRKDRCLQKKNKDKVCAKRGPKESKEASSQEHQHRAPSAGIISSIPLQRLFKPKEMECLGVPTAGEMGHQEVLPLKSYSEVSDAQVLNRPFQNIGLCDFSGEIRVNRNLESRIETETKVVELVSQFPQVVTTPLKPEGMAMPVTLSSDSETAPCSVETSDGVSKLSSGSISAVSVPGGPNDDAEPTFIDFEAESEDAVNTPESALYQKGVDSIPETVDNISLKMAIVSKLESTNGIIDPTVTRECESDSSADELCVKYEPSDTAVLAHEMGIDNGFKNGCDTASKARMEDMAGAECDHKTADRPCVVAVRESDESSSNTSNFSDYIEMSADVALLNAAESENGSENVSSLTTCPDIHAESIASSFTESTGKLIECVSGCASSFPIKKIADSNCTTCLDSELRVSNGTEVLLESALGSDLNSTEEITEALHELRTAAEEFKTKEEDDSENVVCGVSFSDRDPSVETSVELKTTDTSHIEGSIAVEESWESMFNDDGDCVDPRLLQELSGNMKNRKSIQEPRFDYYSHELPDIDLSECEFPHVIEIYDFPREFRTEDLLRIFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKHTMVKIRPLSQATRAAKAKARACAEFLQPAKERPETSAALARRLVISALGVRSKQNKTEREAELKKLQEARERKRLEAKQREDIWEGRSQSAV", "length": 769, "header": "tr|A0A8C2MVX3-1|A0A8C2MVX3_CRIGR Isoform 1 of Coiled-coil domain-containing protein R3HCC1L isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hcc1l PE=4 SV=1 CANONICAL=A0A8C2MVX3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MVX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVX3/entry", "sequence": { "sequence": "MQQEAERCRARTKRPDMALYVPKARRGTEVLKAGDKEESCRPPEGCLPQKISGNKPESHRLSGHSDRKECDSREGKRSSSKLRKDRCLQKKNKDKVCAKRGPKESKEASSQEHQHRAPSAGIISSIPLQRLFKPKEMECLGVPTAGEMGHQEVLPLKSYSEVSDAQVLNRPFQNIGLCDFSGEIRVNRNLESRIETETKVVELVSQFPQVVTTPLKPEGMAMPVTLSSDSETAPCSVETSDGVSKLSSGSISAVSVPGGPNDDAEPTFIDFEAESEDAVNTPESALYQKGVDSIPETVDNISLKMAIVSKLESTNGIIDPTVTRECESDSSADELCVKYEPSDTAVLAHEMGIDNGFKNGCDTASKARMEDMAGAECDHKTADRPCVVAVRESDESSSNTSNFSDYIEMSADVALLNAAESENGSENVSSLTTCPDIHAESIASSFTESTGKLIECVSGCASSFPIKKIADSNCTTCLDSELRVSNGTEVLLESALGSDLNSTEEITEALHELRTAAEEFKTKEEDDSENVVCGVSFSDRDPSVETSVELKTTDTSHIEGSIAVEESWESMFNDDGDCVDPRLLQELSGNMKNRKSIQEPRFDYYSHELPDIDLSECEFPHVIEIYDFPREFRTEDLLRIFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKHTMVKIRPLSQATRAAKAKARACAEFLQPAKERPETSAALARRLVISALGVRSKQNKTEREAELKKLQEARERKRLEAKQREDIWEGRSQSAV", "length": 769, "header": "tr|A0A8C2MVX3-1|A0A8C2MVX3_CRIGR Isoform 1 of Coiled-coil domain-containing protein R3HCC1L isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hcc1l PE=4 SV=1 CANONICAL=A0A8C2MVX3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVX3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVX3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MVX3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVX3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767534", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767534", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JZM0-1", "protein_name": "R3H domain and coiled-coil containing 1-like", "gene_name": "R3hcc1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQQEAERCRVRTKRPDMALYVPKARRGAALLKSGDQEENQGPPAFVLREQKEDCLPQKTSTSKPESHRLSAGQSGRKDSNCREGKRSPPKLRKDRSPPKRNKEKACSKRGTGKPIDASSQEHQNSAHDAAAVSSIPLRRLFKPKEMECVEVQTSGGTGPWGVPPSQSSSEVSAAQVPNRPFQNVELCDFSGETFVNRNLESSIVTEAKVMELVSQFPQVVTTMLKPDGMAMPGTLSSDSETAPYGVETSHGMSKHSPGNISAISVPGEPDDAAHPTFVDFEAESESTVNSTESVLGQNGVDSISETMGNVSLKMAIVSKLESTNGIIDPAVTGECGNDSSADELCVKSEPSDTVDLVHEIDTGNGFRDVCDSASKAGMVDIAGTVCDPVTVGSPCTAAVRESGESSGNMRNSSDYIEMSADVARLDSAKSETNSENSSSLNACSDIYAGSIASGFTASTGKLTESVPDCASSLPIKKTADSDITPCLDSELSMSNGSGILVESALASDLDTTEEMTEALHDLRTAEEFKTKEEDDSESRVCGIPFSDSSVDTSVGLKTTDTSHTQGSIAVEESWESMFNDDGDCVDPRLLQELSGNMKNRKSIQEPRFDYYNHELPDIDLSECEFPHVIEIYDFPQEFRTEDLLRIFCSYQKKGFDIKWVDDTHALGVFSSPIAARDALGIKHTMVKIRPLSQATRAAKAKARACAEFLQPAKERPETSAALARRLVISALGVRSRQSKTEREAELRKLQEARERKRLEAKQREDIWEGRDQSVV", "length": 775 }, "evidence": [ { "id": "A0A8C2MVX3", "url": "https://omabrowser.org/oma/group/A0A8C2MVX3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A3Q1LPM5-1", "protein_name": "R3H domain and coiled-coil containing 1 like", "gene_name": "R3HCC1L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQQEAERCRVRARRPDMALYVPKARRGIVLLKSGDEGRSCGPPNSVAKGEQREDSLSQKEIFRDKCETPRLSINSDKKEHNRREGKKSSTKFKKDTCLQERKKDRVCTKRATAESKEVLSQGHQQRVLNTGVVPSIPLQRHFKPKKVECLEVETRDVVGHDGLLLSQSCSEISKAWVPNKPSTNVEISDIKRNELNGEIFEDTNLENRMETDAKIMKILSQFPGDFNSVVKPESVISPVKQNSDSGIVQRGMQTLGGMLKHSNGAITTDSVPGSSDGIIGQTHIDLDAENVGDTANRTDSVSSQKGMDSIPETVGHLSHQMTMSSKLESANDISDPTTIRECEENDNTADELCVKHESSDTAALAHETCTDNESESVCDITSKTCTMDITHTISDQITVGSPCVVEVRVADEACSNTGSFSDCLEMNADTALLHAAKSRNDTENFSDLTACSDVYAESISSSFTESTGKLIESLSDCASSLPIKKITGSNCNTFLDSEPSMLNGTNVFSDGALGSDLDGTGDITEALHELKTAEEFKTKEDGDSENVEFGVSFPDIESVSKETSVEPKATDISHTERSATTEESWESMFNDDGECLDPRLLQELSGNMKNRESIQEPRFDYYNHEVPDIDLSDCEFPHVIEIYDFPQEFRTEDLLRIFCTYQKKGFDIKWVDDTHALGVFSSPITARDALGSKHTMVKIRPLSQATRAAKAKARAYAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELKKLREARERKRLEARQREAIWEGRDQSAV", "length": 786 }, "evidence": [ { "id": "A0A8C2MVX3", "url": "https://omabrowser.org/oma/group/A0A8C2MVX3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7Z5L2-1", "protein_name": "Coiled-coil domain-containing protein R3HCC1L", "gene_name": "R3HCC1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQESERCRVRARRPDMALYVPKARRGAVLLKTGDEEESCGSPNSVVKEKQKESSLSQKEVFKDKPEARRLNINPDRKEHNCREEKKSSTKLRMDTCLQKTNRVCSKRGTTESKEVLSQGQQQGAPNAGVITNAPLQRHFKPKKVECLEVETTDVTGHERILLSQACLEISEAQVPSKPFQNVEFCDFSRHEPDGEAFEDKDLEGRIETDTKVLEILYEFPRVFSSVMKPENMIVPIKLSSDSEIVQQSMQTSDGILNPSSGGITTTSVPGSPDGVFDQTCVDFEVESVGGIANSTGFILDQKDTDSIPATMGHISLSESTNDTVSPVMIRECEKNDSTADELHVKHEPPDTAVLAHETHRDSGFKNVGDITNKACMMDTTGMSCSDHVTVDSPYVVAVRIADETSINTRSFSKFVGMSADATPLHVARSGNDTEDFSNPSACSDIYGESISSHFTESTGKLIESLSDCASSLPIKKIAGSNYNTFLDSELSMLNGTKVLSDSAVGIDLGSTGDTTEALHELRTAEEFKTEEQDDSGSIEFGVSFPDRESSSMETSIEPKATETSHTEGITAIEESWESMFNDDGDCLDPRLLQEGILMHIKPENHCSKLSGNTKSRESIQEPRSDYYNHEVPDIDLSDCEFPHVIEIYDFPQEFHTEDLLRVFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKHTMVKIRPLSQATRAAKAKARAYAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELKKLQEARERKRLEAKQREDIWEGRDQSTV", "length": 792 }, "evidence": [ { "id": "A0A8C2MVX3", "url": "https://omabrowser.org/oma/group/A0A8C2MVX3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BJM3-1", "protein_name": "Coiled-coil domain-containing protein R3HCC1L", "gene_name": "R3hcc1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQQEAERCRVRTKRPDMALYVPKARRGTALLKSSDQEEGHGPPAFVPKDQKEGCLPQKISASKPESQRRGAGHSDRKDVDCREGKRSASQLRKDRCPQKQNKEKACSKKGAEESTEASSQEHQHRAPDAGIVSSIPLQRLFKPKDMDCWEVQTAGATGHWRVSPSQSSSEVSAAQVPSRPFQNVELCDFSGETFVNRNLESSIVTEAKVPELVSQFPQVVTTLLKPDGMAMPVTLSSDSETAPSSLETPDGMSKHSPGDISVVSVPGGPDEDVDSTFVDFEVESEGTVNSTESVLGQKGVDSILETVDNVSLKMAVVSKLESTNGTIDPAVTRECESDSSADELCVKSEPSDTAVLVHEIDTDDGFRNVCDSTSKACMVDIAGTACDPVTEGSSCTGAVGESGESSGNMRNFSDYIEMSADVAPLDRAKSENDSENISSLSACSDIYAESIASGFTESTGKLIESVSDGASSLPIKKTADSNIATCLDSELSMSDASDVLLESALGSDLDTTEEMTEALHDLKTAEEFKTKEEDYSESVVCGISFSDSSVETSVDLKTTDTSHIQGSSAVEESWESMFNDDGDCVDPRLLLELSGNVKNRKSIQEPRFDYYSHELPDIDLSECEFPHVIEIYDFPQEFRTEDLLRIFCSYQKKGFDIKWVDDTHALGVFASPITARDALGTKHTMVKIRPLSQATRAAKAKARACAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELRKLQEARERKRLEAKQREDIWEGRDQSVV", "length": 775 }, "evidence": [ { "id": "A0A8C2MVX3", "url": "https://omabrowser.org/oma/group/A0A8C2MVX3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 427, "end_pos": 429, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 732, "end_pos": 734, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MW31-1", "uniprot_ac": "A0A8C2MW31", "uniprot_id": "A0A8C2MW31_CRIGR", "mass": { "chemical_mass": 14733.0, "monoisotopic_mass": 14733.0 }, "refseq": { "ac": "XP_027271591", "name": "Purkinje cell protein 2 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271591" }, "gene_names": [ { "name": "Pcp2", "type": "recommended", "evidence": [ { "id": "A0A8C2MW31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31" } ] }, { "name": "Pcp2", "type": "synonym", "evidence": [ { "id": "XP_027271591", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271591" } ] } ], "protein_names": [ { "name": "Purkinje cell protein 2 homolog", "type": "synonym", "evidence": [ { "id": "XP_027271591", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271591" }, { "id": "A0A8C2MW31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027271591.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271591", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271591" } ] }, { "annotation": "May function as a cell-type specific modulator for G protein-mediated cell signaling.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MW31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31#function" }, { "database": "UniProtKB", "id": "ARBA00057901", "url": "https://www.uniprot.org/uniprotkb/ARBA00057901#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MW31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pcp2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31", "locus": {} } ], "crossref": [ { "id": "100768267", "url": "https://www.ncbi.nlm.nih.gov/gene/100768267", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768267", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768267", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MW31", "url": "https://www.orthodb.org/?gene=A0A8C2MW31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47503", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47503", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47503:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47503:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271591", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271591", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MW31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MW31-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQKEARGEGASDLLDKAGSPDQEGFFNLLSHVQGDRMEEQRCSLQTGPGQTPESQGGSAPEMDNLMDMLADTQGRRMDDQRVTVNSLPGFQPIGPKDGMQKRPGTLSPQPLLTPQDPAALSFRRNSSPQPQTQAP", "length": 136, "header": "tr|A0A8C2MW31-1|A0A8C2MW31_CRIGR Isoform 1 of Purkinje cell protein 2 homolog OS=Cricetulus griseus OX=10029 GN=Pcp2 PE=4 SV=1 CANONICAL=A0A8C2MW31-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MW31-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31/entry", "sequence": { "sequence": "MDQKEARGEGASDLLDKAGSPDQEGFFNLLSHVQGDRMEEQRCSLQTGPGQTPESQGGSAPEMDNLMDMLADTQGRRMDDQRVTVNSLPGFQPIGPKDGMQKRPGTLSPQPLLTPQDPAALSFRRNSSPQPQTQAP", "length": 136, "header": "tr|A0A8C2MW31-1|A0A8C2MW31_CRIGR Isoform 1 of Purkinje cell protein 2 homolog OS=Cricetulus griseus OX=10029 GN=Pcp2 PE=4 SV=1 CANONICAL=A0A8C2MW31-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MW31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MW31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768267", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768267", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MW31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], 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"Protein Classification" ] }, { "id": "PTHR13267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13267:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13267:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12756", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12756", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641029", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641029", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MWJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MWJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATEARGLGADQREDAAGVRGGVGTMDLEDSKDCILEPLSLPESPGGSTASEGPPSVPCLFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIRINSTAPFEEQDNYFLLCDVLPEDRILREELQKQRLKEILDQQQRERNDTSFHGVCMFCSEEFRGNRSVLLNHMAREHAFNIGLPDNIVNCTEFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRRINPKNRDYDRFYVINYLELGKSWEEVQLEDDRELLGLPEDDWSDWQEYPVCAVCLFCEKQEETIDKLYVHMKDTHEFDLLRIKSELRLNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKTDLRAHMEEAKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQEHNENVPVISEDTSKLCALKRSSVLNQLLLQERLEN", "length": 456, "header": "tr|A0A8C2MWJ7-1|A0A8C2MWJ7_CRIGR Isoform 1 of Zinc finger protein 277 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf277 PE=3 SV=1 CANONICAL=A0A8C2MWJ7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MWJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ7/entry", "sequence": { "sequence": "MAATEARGLGADQREDAAGVRGGVGTMDLEDSKDCILEPLSLPESPGGSTASEGPPSVPCLFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIRINSTAPFEEQDNYFLLCDVLPEDRILREELQKQRLKEILDQQQRERNDTSFHGVCMFCSEEFRGNRSVLLNHMAREHAFNIGLPDNIVNCTEFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRRINPKNRDYDRFYVINYLELGKSWEEVQLEDDRELLGLPEDDWSDWQEYPVCAVCLFCEKQEETIDKLYVHMKDTHEFDLLRIKSELRLNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKTDLRAHMEEAKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQEHNENVPVISEDTSKLCALKRSSVLNQLLLQERLEN", "length": 456, "header": "tr|A0A8C2MWJ7-1|A0A8C2MWJ7_CRIGR Isoform 1 of Zinc finger protein 277 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf277 PE=3 SV=1 CANONICAL=A0A8C2MWJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G3N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3N5/entry", "sequence": { "sequence": "MIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIRINSTAPFEEQDNYFLLCDVLPEDRILREELQKQRLKEILDQQQRERNDTSFHGVCMFCSEEFRGNRSVLLNHMAREHAFNIGLPDNIVNCTEFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRRINPKNRDYDRFYVINYLELGKSWEEVQLEDDRELLGLPEDDWSDWQEYPVCAVCLFCEKQEETIDKLYVHMKDTHEFDLLRIKSELRLNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKTDLRAHMEEAKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQEHNENVPVISEDTSKLCALKRSSVLNQLLLQERLEN", "length": 378, "header": "tr|A0A9J7G3N5-1|A0A9J7G3N5_CRIGR Computationally mapped isoform of Zinc finger protein 277 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf277 PE=3 SV=1 CANONICAL=A0A8C2MWJ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771775", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771775", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XAA2-1", "protein_name": "Zinc finger protein 277", "gene_name": "ZNF277", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAARGEGGPAARGECILEPLSLPESPASPDGVATVESSPSVPCIFCEECYVLAEQNQLLKHMIIEHKLVIADVKLVADFKRYVLYWKKRFAEQPVTDFCSVIRTNSEAPLEEQDNYFLLCDVLPEDRLLREQLQQKRLREILEQQQQERYDTSFHSMCMFCDQEFTGNRSVLLNHMAREHAFNIGLPDNIVNCYEFLAVLQEKLDNLQCLYCEKVFRDKNTLKDHMRKKQHRRINAKNKEYDRFYIINYLEFGKSWEEVQSEDDRELLDNLEEDWSDWEEHPVCAVCLFCEQQADTTEKLHLHMQKSHGFDFLKIKSELGLNFYQQVKLVNFIRREIHHRRCYNCQEKFQSKGGLISHMEETKHITFLPARSTWDQPQYYFPTYENDTLLCTLSDSEDLIPEDQSEDVPVVSEDISSLKALKQSSILNQLLCEENSSHDKS", "length": 442 }, "evidence": [ { "id": "A0A8C2MWJ7", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6Q3F4-1", "protein_name": "Zinc finger protein 277", "gene_name": "ZNF277", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFSLRDCCLPLHPGKSLQPLPSLSRVMAAPKTQGAATQGEDSDGNRGGAGGVNYEDTKDYILEPLSLPESPGGTTSLEGSPSVPCIFCEEHFPVVEQDKLLKHMIIEHKIVIADVKLVADFRRYILYWRKRFTEQPITDFCSVIRINCTAPSEEQDNYFLLCDVLPEDRILREELQKQRLKEILEQQQQERNDNSFRGICMFCNEEFLGNRSILLNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRRINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLEHQEDDWSDWEEHPVSAVCLFCEKQAETIEKLCVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQIHQCRCYGCQEKFRSKADLRTHMEEAKHTALLPEKQIWDQPQYYFPTYENDTLLCTLSDSESDLTAQEQNGNIAIISEDTSKLHALKQSSILNQLLLHESLKN", "length": 481 }, "evidence": [ { "id": "A0A8C2MWJ7", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54Q44-1", "protein_name": "C2H2-type zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MQDWSKWPTVEPLKSSLTFDFNNNNNNNNNIQIPTIITPATTTTTTTTTTTSTTATTTGSISNLNINQSDSEDLSASDAESTSSVVSSNTNNTGVKYPCLLCSHFEFESRTILEHIFNQHKFVIADVNQITNLVGYLEHWKKQFVGKPLTEFTTVVQTQTSKSEPVTNYYLLSDILPQDQDIRRKLQTGQLNSILEQQHSERINPNFTCICPMCPATFKGDRSSVTTHLVEQHNFNIGLSDNLVNLKELLEILKEKCDEMQCLYCEKIFKSQSVLKLHMKKKKHNRLNPTNTTYDKYYLLNYLEPGKNWEDLKKDHGDNDDDDNKYINNIDIMKQAQNENNGNHQISHWDDWTEGSENEIEDTAVCLFCETHFDNSDCTFEHMRNVHNFDFDKKRKSWNLDYYESIKLLNFIRRCVSEMICCYCGDNSFKDKETFFSHLHINQHEHCGVIQENPVWKDAQYLFPTYENDNILTNFEEFDESENQQYLEEELEYQSNLIDEMQQNRDDILKKMNESNITF", "length": 519 }, "evidence": [ { "id": "A0A8C2MWJ7", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9NRM2-1", "protein_name": "Zinc finger protein 277", "gene_name": "ZNF277", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASKTQGAVARMQEDRDGSCSTVGGVGYGDSKDCILEPLSLPESPGGTTTLEGSPSVPCIFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIRINSTAPFEEQENYFLLCDVLPEDRILREELQKQRLREILEQQQQERNDTNFHGVCMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQLLL", "length": 450 }, "evidence": [ { "id": "A0A8C2MWJ7", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W1V7-1", "protein_name": "Zinc finger protein 277", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEHEVAVSGGDSSLEEITGSSKLKPSKNTAIKCLKCDKVYIFPSDKDDCLAHLYMEHRLVIADVEDIALLEDYLQYWEKEFHTHEFEQYCTTMFLDQLPDGKYAKNEKYYLLCDILPQDYELRRRLKEKRLSEALERHQFELTDRTFSKECLFCRAIIKGLRADYLDHLFDKHFLLVGKPEKLVYVDELLDHLEENLNRLMCLYCEKIFRDRPTLKEHMRKKGHKRINPNRREYDKYFLINYNRVPTAPTPRKQHLQKRRRETASVSTVADPETGSVDFDKHFARPDSDGEHDSDWSDWAADGEPSSIKCLFCHHLGDNFTALKKHMHEVHRLDFEKATSSLNFYQRVKVVNYLRRQMCLLRCVTCDLQFDEEELLVEHMAQESHHGIGDKESWDKPEFFFPYIENDGLLCVLDDSGGDDPDVDTVRIISEDSLAQINKDAERLSLENFKLL", "length": 452 }, "evidence": [ { "id": "A0A8C2MWJ7", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MWJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 224, "end_pos": 253, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 122, "end_pos": 124 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 185, "end_pos": 187 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 403, "end_pos": 405 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MWJ9-1", "uniprot_ac": "A0A8C2MWJ9", "uniprot_id": "A0A8C2MWJ9_CRIGR", "mass": { "chemical_mass": 33617.0, "monoisotopic_mass": 33617.0 }, "refseq": { "ac": "XP_007641016", "name": "tetratricopeptide repeat protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641016" }, "gene_names": [ { "name": "Ttc1", "type": "recommended", "evidence": [ { "id": "A0A8C2MWJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9" } ] }, { "name": "Ttc1", "type": "synonym", "evidence": [ { "id": "XP_007641016", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641016" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 1", "type": "recommended", "evidence": [ { "id": "A0A8C2MWJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641016", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641016" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613882.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641016", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641016" } ] }, { "annotation": "Adapter protein that plays a role downstream of GNA15 to stimulate Ras activation and subsequent phosphorylation of ERK1/2 independently of phospholipase Cbeta signaling. Mechanistically, interacts with GNA15 and SOS2 to form a macromolecular signaling complex which has a high affinity for HRAS. Additionally, participates in signaling via other G-alpha proteins like GNA14, activating NF-kappa-B through Ras and ERK pathways. Beyond signaling, supports protein homeostasis by cooperating with HSP40 in the HSP70 chaperone cycle, promoting protein folding through the regulated dissociation of the HSP70 inhibitor HSPBP1.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9#function" }, { "database": "UniProtKB", "id": "ARBA00094427", "url": "https://www.uniprot.org/uniprotkb/ARBA00094427#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttc1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9", "locus": {} } ], "crossref": [ { "id": "100766507", "url": "https://www.ncbi.nlm.nih.gov/gene/100766507", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766507", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766507", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KSAIDDC", "url": "https://omabrowser.org/oma/group/KSAIDDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MWJ9", "url": "https://www.orthodb.org/?gene=A0A8C2MWJ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46014", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46014", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46014:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46014:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00515", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00515", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641016", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641016", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MWJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MWJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEKSENCKVPEDLFNGLKVTDSQEVESASPQVSDPKVQHSQSKLLKDDGAHSQEDHGEEECFHDCSASFEEEQPGAQMVGDKATDESGSSELDEEYLTELEKNMPEEEKQKRREESTKLKEQGNEQFKRGDYIEAESSYSQALQMCPSCFQKDRSVLFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKLILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNNR", "length": 294, "header": "tr|A0A8C2MWJ9-1|A0A8C2MWJ9_CRIGR Isoform 1 of Tetratricopeptide repeat protein 1 OS=Cricetulus griseus OX=10029 GN=Ttc1 PE=4 SV=1 CANONICAL=A0A8C2MWJ9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MWJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9/entry", "sequence": { "sequence": "MGEKSENCKVPEDLFNGLKVTDSQEVESASPQVSDPKVQHSQSKLLKDDGAHSQEDHGEEECFHDCSASFEEEQPGAQMVGDKATDESGSSELDEEYLTELEKNMPEEEKQKRREESTKLKEQGNEQFKRGDYIEAESSYSQALQMCPSCFQKDRSVLFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKLILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNNR", "length": 294, "header": "tr|A0A8C2MWJ9-1|A0A8C2MWJ9_CRIGR Isoform 1 of Tetratricopeptide repeat protein 1 OS=Cricetulus griseus OX=10029 GN=Ttc1 PE=4 SV=1 CANONICAL=A0A8C2MWJ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWJ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766507", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766507", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AVJ6-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGEKSENCMVSEDMFNGLKVTDTHEAECVSPPVANAKDDHTQSKLHKDVEARPQEDQEEEECFHDSSASFEEEPGPNKVENKSDDDVNSSELDEEYLIELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKAIQLNPNYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEDRNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E1BWM0-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEVKDGHPPEELLDHLKLSDQKSTESTSSWASGPKDAQNLPNLASGDIPSSAKDPTTADECFHDCRDSFEMKEPVLDDEESSQNDENSTRKQTELDEEYLLELEKDMPEEEKQKRRKESTTLKEKGNEQFKKGDYGEAEDSYTKALQICPACFQKDRAVLFSNRAAAKMKQDKTEAALNDCSKAVELDPNYIRALLRRAELHEKTEKLDEALEDYKAILEKDPSVHQAREACMRLPRQIEERNEKLKKEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 296 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3ZBR5-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGEKSNCRVPEDLFTGLKVTDPQEAECLHPPVSSGKEQHSQSELLKDVDAQPQEDQGEEECFHDASASFETEEPGADKLENKPEDDMNPSELDEEYLMELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66H09-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "Ttc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGKSEDCKVPEDLFNGLKVTDSQETESASSLVSDPKDQHVQSKPLKDAEAHPQEDHGEEECFHDCSASFEEEQPGAHMAGDKASDESSSELEEEYLIELEKNMPEEEKQKRREESAKLKEEGNEQFKRGDYVEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKEMAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSILETDPSVHQAREACVRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91Z38-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "Ttc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEKSEDCKVPEDLFNGLKVADPQEGESASPMVSDPKGQHCQSKLPKAAEAHPQDDHVEEECFHDCSASFEEEQPGAHVAGSKASDDSSSELDEEYLIELEKNMPEEEKQKRREESAKLKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99614-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEKSENCGVPEDLLNGLKVTDTQEAECAGPPVPDPKNQHSQSKLLRDDEAHLQEDQGEEECFHDCSASFEEEPGADKVENKSNEDVNSSELDEEYLIELEKNMSDEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9M0B2-1", "protein_name": "Tetratricopeptide repeat (TPR)-like superfamily protein", "gene_name": "TPR1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLIESSESEDEILIKNEPKPASSSSPQPTETKQVDGDDSDGFETASEREISDEEGEEDGTKNDAVTSQEEPQHSEKKEEQIELMSEGEAIVDDGSNKEKALAEANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIELRSICYLNRGVCFLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTDLKKILELDPSNDQARKGIRRLEPLAAEKREKMKEEAITKLKEMGNSILGRFGMSVDNFKAVKDPNTGSYSLSFQN", "length": 277 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VEV3-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "Ttc1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAGNANSDDEFHDAIGEEITEKEATSTRQSEKDVDEIVEKQNQLALDDEAEQGAAGGDSIATPTTVDSELTIEELREREKDLSPEQLTANKEKADKLKVEGNELFKNDDAEGAAKTYTEALDICPSASSKERAVLYGNRAAAKIKLEANKAAIDDCTKAIELWPEYVRVLLRRAKLYEQEDKPDEALEDYKKVTEIDPGQQEAREAQIRLPPIINERNEKLKNEMMSSLKDLGNMILKPFGLSTQNFQMQQDPNTGSYSINFK", "length": 263 }, "evidence": [ { "id": "A0A8C2MWJ9", "url": "https://omabrowser.org/oma/group/A0A8C2MWJ9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MWK1-1", "uniprot_ac": "A0A8C2MWK1", "uniprot_id": "A0A8C2MWK1_CRIGR", "mass": { "chemical_mass": 75768.0, "monoisotopic_mass": 75768.0 }, "refseq": { "ac": "XP_007646383", "name": "beta-galactosidase-1-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646383" }, "gene_names": [ { "name": "Glb1l", "type": "recommended", "evidence": [ { "id": "A0A8C2MWK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" } ] }, { "name": "Glb1l", "type": "synonym", "evidence": [ { "id": "XP_007646383", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646383" } ] } ], "protein_names": [ { "name": "beta-galactosidase", "type": "recommended", "evidence": [ { "id": "A0A8C2MWK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.23", "type": "synonym", "evidence": [ { "id": "A0A8C2MWK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1/entry#names_and_taxonomy" } ] }, { "name": "beta-galactosidase-1-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007646383", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646383" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614410.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646383", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646383" } ] }, { "annotation": "Cleaves beta-linked terminal galactosyl residues from gangliosides, glycoproteins, and glycosaminoglycans.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1#function" }, { "database": "UniProtKB", "id": "ARBA00002691", "url": "https://www.uniprot.org/uniprotkb/ARBA00002691#function" }, { "database": "UniProtKB", "id": "A0A9J7FBK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Glb1l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1", "locus": {} } ], "crossref": [ { "id": "100768265", "url": "https://www.ncbi.nlm.nih.gov/gene/100768265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768265", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768265", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MWK1", "url": "https://www.orthodb.org/?gene=A0A8C2MWK1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FBK4", "url": "https://www.orthodb.org/?gene=A0A9J7FBK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23421", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23421", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01301", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01301", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007646383", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646383", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MWK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MWK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGTALTEQKSPVSAMAAKMLPDPASLLLRLVTLLLLLLSQAEARSFVVDRLHDRFLLNGVPFRYVSGSLHYFRVPRVLWADRLLKMRLSGLNAVQFYVPWNYHEPEPGVYNFNGSRDLIAFLDEATRVNLLVILRPGPYICAEWEMGGLPSWLLRKPNIHLRTSDPAFLSAVDSWFKVLLPKIYPYLYHNGGNIISIQVENEYGSYRACDYKYMRHLAGLFRTLLGDEILLFTTDGPQGLRCGSLQGLYTTIDFGPADNMTRIFSLLRDYEPHGPLVNSEYYTGWLDYWGQNHSMRTSSAIAQGLEKMLRIGASVNMYMFHGGTNFGYWNGADEKGRFLPITTSYDYDAPISEAGDLTPKLFAIRSVISKFQEIPLGPLPPPSPKMKLGPLTMNLDGNLLSFLDFLCPHGPIRSVLPLTFEAVKQDHGFMLYRTYLTYTIVEPTAFWVPNNGIHDRAYVMVDGVFKGVLERNLKHELYLTGKVGAKLDILLENMGRLSFGSNHSDFKGLLEPPLLGQTILTEWMMFPLKVDKLVRWWFPLQLTKRAQPQASSGPAFYSTTFSVLGKLGDTFLYLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRLLLFGRSTNKITLLELENVPHEPQIQFLDTPILNSTFHWGYTYFLSETQGSYEPMELSGH", "length": 667, "header": "tr|A0A8C2MWK1-1|A0A8C2MWK1_CRIGR Isoform 1 of beta-galactosidase OS=Cricetulus griseus OX=10029 GN=Glb1l PE=3 SV=1 CANONICAL=A0A8C2MWK1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MWK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1/entry", "sequence": { "sequence": "MGGTALTEQKSPVSAMAAKMLPDPASLLLRLVTLLLLLLSQAEARSFVVDRLHDRFLLNGVPFRYVSGSLHYFRVPRVLWADRLLKMRLSGLNAVQFYVPWNYHEPEPGVYNFNGSRDLIAFLDEATRVNLLVILRPGPYICAEWEMGGLPSWLLRKPNIHLRTSDPAFLSAVDSWFKVLLPKIYPYLYHNGGNIISIQVENEYGSYRACDYKYMRHLAGLFRTLLGDEILLFTTDGPQGLRCGSLQGLYTTIDFGPADNMTRIFSLLRDYEPHGPLVNSEYYTGWLDYWGQNHSMRTSSAIAQGLEKMLRIGASVNMYMFHGGTNFGYWNGADEKGRFLPITTSYDYDAPISEAGDLTPKLFAIRSVISKFQEIPLGPLPPPSPKMKLGPLTMNLDGNLLSFLDFLCPHGPIRSVLPLTFEAVKQDHGFMLYRTYLTYTIVEPTAFWVPNNGIHDRAYVMVDGVFKGVLERNLKHELYLTGKVGAKLDILLENMGRLSFGSNHSDFKGLLEPPLLGQTILTEWMMFPLKVDKLVRWWFPLQLTKRAQPQASSGPAFYSTTFSVLGKLGDTFLYLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRLLLFGRSTNKITLLELENVPHEPQIQFLDTPILNSTFHWGYTYFLSETQGSYEPMELSGH", "length": 667, "header": "tr|A0A8C2MWK1-1|A0A8C2MWK1_CRIGR Isoform 1 of beta-galactosidase OS=Cricetulus griseus OX=10029 GN=Glb1l PE=3 SV=1 CANONICAL=A0A8C2MWK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK4/entry", "sequence": { "sequence": "MAAKMLPDPASLLLRLVTLLLLLLSQAEARSFVVDRLHDRFLLNGVPFRYVSGSLHYFRVPRVLWADRLLKMRLSGLNAVQFYVPWNYHEPEPGVYNFNGSRDLIAFLDEATRVNLLVILRPGPYICAEWEMGGLPSWLLRKPNIHLRTSDPAFLSAVDSWFKVLLPKIYPYLYHNGGNIISIQVENEYGSYRACDYKYMRHLAGLFRTLLGDEILLFTTDGPQGLRCGSLQGLYTTIDFGPADNMTRIFSLLRDYEPHGPLVNSEYYTGWLDYWGQNHSMRTSSAIAQGLEKMLRIGASVNMYMFHGGTNFGYWNGADEKGRFLPITTSYDYDAPISEAGDLTPKLFAIRSVISKFQEIPLGPLPPPSPKMKLGPLTMNLDGNLLSFLDFLCPHGPIRSVLPLTFEAVKQDHGFMLYRTYLTYTIVEPTAFWVPNNGIHDRAYVMVDGVFKGVLERNLKHELYLTGKVGAKLDILLENMGRLSFGSNHSDFKGLLEPPLLGQTILTEWMMFPLKVDKLVRWWFPLQLTKRAQPQASSGPAFYSTTFSVLGKLGDTFLYLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRLLLFGRSTNKITLLELENVPHEPQIQFLDTPILNSTFHWGYTYFLSETQGSYEPMELSGH", "length": 652, "header": "tr|A0A9J7FBK4-1|A0A9J7FBK4_CRIGR Computationally mapped isoform of beta-galactosidase OS=Cricetulus griseus OX=10029 GN=Glb1l PE=3 SV=1 CANONICAL=A0A8C2MWK1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768265", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768265", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "beta-galactosidase activity", "id": "GO:0004565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004565", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MWK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 503, "end_pos": 505, "annotation": "n_glycosylation_sequon" }, { "start_pos": 641, "end_pos": 643, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MWK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" }, { "id": "PF21317", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21317" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-galactosidase 1-like first all-beta", "eco_id": "ECO_0000259", "start_pos": 418, "end_pos": 530, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MWK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" }, { "id": "PF21467", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21467" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-galactosidase galactose-binding", "eco_id": "ECO_0000259", "start_pos": 555, "end_pos": 610, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MWK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWK1" }, { "id": "PF01301", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01301" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycoside hydrolase 35 catalytic", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 371, "start_aa": "Phe", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.2.1.23", "ec_name": "Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.", "evidence": [ { "id": "3.2.1.23", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.2.1.23" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 260, "end_pos": 262 }, { "start_pos": 293, "end_pos": 295 }, { "start_pos": 503, "end_pos": 505 }, { "start_pos": 641, "end_pos": 643 } ] }, "class_list": [], "section_stats": [ { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MWT6-1", "uniprot_ac": "A0A8C2MWT6", "uniprot_id": "A0A8C2MWT6_CRIGR", "mass": { "chemical_mass": 19194.0, "monoisotopic_mass": 19194.0 }, "refseq": { "ac": "XP_027287210", "name": "protein MAL2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287210" }, "gene_names": [ { "name": "Mal2", "type": "recommended", "evidence": [ { "id": "A0A8C2MWT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWT6" } ] }, { "name": "Mal2", "type": "synonym", "evidence": [ { "id": "XP_027287210", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287210" } ] } ], "protein_names": [ { "name": "Protein MAL2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MWT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWT6/entry#names_and_taxonomy" } ] }, { "name": 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This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_003614582.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647583" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cenpn", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2", "locus": {} } ], "crossref": [ { "id": "100765070", "url": "https://www.ncbi.nlm.nih.gov/gene/100765070", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765070", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765070", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WSVYQMK", "url": "https://omabrowser.org/oma/group/WSVYQMK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MXD2", "url": "https://www.orthodb.org/?gene=A0A8C2MXD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46790", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46790", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46790:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46790:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647583", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MXD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF72-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDENVAEFIRRSILKIPLCEMKTILKAWNFLSEDQLQTINFRQRKEFLAQEVILMCEEKCARLDDMALLDIVYTQVHRHRKLWNVFEMSKEPGEDVDLFDMKWFQCSFKKILQRALRNVTVSFRVDGKNAVWIRIAWGTQYSQPNQYKPTFVVYYPQTPYAFISSCHLKSNVPLLHQALKVASKHHQIVQMDLRSRHLDSLKAIVFREYDQTFESHNSTVPLQEGNLGLDMNLDSNIIHENLEEKERIHRVTQETFGAHPQPQLEFAQYKLETKFKSGISGGILADRKEPLRCLIKFSSPHLLEALKSLAPAGIADAPLSPLLTCIANKKMNYFKIRDK", "length": 339, "header": "tr|A0A8C2MXD2-1|A0A8C2MXD2_CRIGR Isoform 1 of Centromere protein N isoform X1 OS=Cricetulus griseus OX=10029 GN=Cenpn PE=3 SV=1 CANONICAL=A0A8C2MXD2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MXD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2/entry", "sequence": { "sequence": "MDENVAEFIRRSILKIPLCEMKTILKAWNFLSEDQLQTINFRQRKEFLAQEVILMCEEKCARLDDMALLDIVYTQVHRHRKLWNVFEMSKEPGEDVDLFDMKWFQCSFKKILQRALRNVTVSFRVDGKNAVWIRIAWGTQYSQPNQYKPTFVVYYPQTPYAFISSCHLKSNVPLLHQALKVASKHHQIVQMDLRSRHLDSLKAIVFREYDQTFESHNSTVPLQEGNLGLDMNLDSNIIHENLEEKERIHRVTQETFGAHPQPQLEFAQYKLETKFKSGISGGILADRKEPLRCLIKFSSPHLLEALKSLAPAGIADAPLSPLLTCIANKKMNYFKIRDK", "length": 339, "header": "tr|A0A8C2MXD2-1|A0A8C2MXD2_CRIGR Isoform 1 of Centromere protein N isoform X1 OS=Cricetulus griseus OX=10029 GN=Cenpn PE=3 SV=1 CANONICAL=A0A8C2MXD2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF72/entry", "sequence": { "sequence": "MDENVAEFIRRSILKIPLCEMKTILKAWNFLSEDQLQTINFRQRKEFLAQEVILMCEEKCARLDDMALLDIVCEDVDLFDMKWFQCSFKKILQRALRNVTVSFRVDGKNAVWIRIAWGTQYSQPNQYKPTFVVYYPQTPYAFISSCHLKSNVPLLHQALKVASKHHQIVQMDLRSRHLDSLKAIVFREYDQTFESHNSTVPLQEGNLGLDMNLDSNIIHENLEEKERIHRVTQETFGAHPQPQLEFAQYKLETKFKSGISGGILADRKEPLRCLIKFSSPHLLEALKSLAPAGIADAPLSPLLTCIANKKMNYFKIRDK", "length": 319, "header": "tr|A0A9J7JF72-1|A0A9J7JF72_CRIGR Computationally mapped isoform of Centromere protein N isoform X2 OS=Cricetulus griseus OX=10029 GN=Cenpn PE=3 SV=1 CANONICAL=A0A8C2MXD2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765070", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765070", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1SYA1-1", "protein_name": "Centromere protein N", "gene_name": "CENPN", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDDIVAEFFRRTILKIPMTEMMTILKAWDFLSESQLQAVNFRQRKESLAQDLVLLCQEKRARLQDAALLDIIYTQFHRHQKVWDAFQMSKGAGGDTDLFDMEQFKSSFKKILQRALKNVTVSFRDAEENAVWIRIAWGTQYRKPNQYKPTYVVYYSQAPYAFISSSQLKSNLPLLGQALTIASKHHQIVKMDLRSRYLDSLKAIVFKQYNQNFETHNSSIPLQERSLGLDIHMDSRIIHENRIEKERVQGVTREIFGDYPQPRLEFAQYKLETKFRSDLNGGILADREEPLRCLVKFSSPHLLEALKSLAPAGIADAPLSPLLTCIPSKGMNYFKIRDK", "length": 339 }, "evidence": [ { "id": "A0A8C2MXD2", "url": "https://omabrowser.org/oma/group/A0A8C2MXD2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q1T765-1", "protein_name": "Centromere protein N", "gene_name": "CENPN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDEVIVEYIRRTVLKIPRDEIMAVLQKWGFLSEAQLQTINFRQTKEGISHSVAQLCEESSADLKQAALLDIIYNHIYPNKRVWSVYHMNKTGEETDFFDFRDFKKKFRRQIQSALINVTINFREYEDNAIWIRIAWGTPYTKPNQYKTSYVVYHSQTPYVFISASVLRSNLPLLCQAMVVASNYHDIHEMELRSHCLNSLKDIVFKRYSQNFQTNYPLQERNVLTENVDLRINDENRSEKERIYRLNQESFGNGPQPKLDFAQYKLETMFKSDPKWDVLEKKEPFRCLVKFSSPHLLESLKSLAPAGLADAPLSPLLTCIPQKARNYFKIREKKSLHPGSFVSP", "length": 344 }, "evidence": [ { "id": "A0A8C2MXD2", "url": "https://omabrowser.org/oma/group/A0A8C2MXD2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5U2W4-1", "protein_name": "Centromere protein N", "gene_name": "Cenpn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDENVAEFLRRIILKIPLCEMKTILEAWDFLSEDQLQSINLKQRKEFLAQEVILLCEDKCASLDDMALLDLMYTQFHRHQKLWNVFQMSKEPGGNDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYEKNSVWIRVAWGTQYSQPNQYKPTFVVYYPQTPYVFISSCYLKSTVPLLHQALKVASKHHQMAQLDLRSRHLDSLTAIVFNEYDQTFENYNSTASWREGSLGLKTDLDSKIIHENTEEKVRIHRATQEAFGAYPQPQLEFAQYKLETKFKSDVGGGILADRKEPLRCLVKFSSPHLLEALKSLAPAGIADTPLSPLLTCIPSKKMNYFKIRDK", "length": 340 }, "evidence": [ { "id": "A0A8C2MXD2", "url": "https://omabrowser.org/oma/group/A0A8C2MXD2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96H22-1", "protein_name": "Centromere protein N", "gene_name": "CENPN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKRASISDAALLDIIYMQFHQHQKVWEVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVTVSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALTIASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHENIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSPHLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK", "length": 339 }, "evidence": [ { "id": "A0A8C2MXD2", "url": "https://omabrowser.org/oma/group/A0A8C2MXD2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CZW2-1", "protein_name": "Centromere protein N", "gene_name": "Cenpn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKENVAEFLRRTILKIPLSEMKSILEAWDFLSEDQLQTINLKQRKDYLAQEVILLCEDKRASLDDVVLLDIVYTQFHRHQKLWNVFQMSKEPGEDVDLFDMEQFQSSFKRILQRALKNVTVSFRVYEKDSVWIRVAWGTQYSQPNQYKPTFVVYYPQTPYAFISSCHLKNTVPLLHQALKVASKHHQIVHLDLRSRHLDSLKAIVFREYNQTCENYSSTTSLQEASLSMCLDSKITHENTEEKVRVHRVTQETFGTYPQPQLEFAQYKLETKFKSNIGGGLLADRKEPFRCLVKFSSPHLLEALKSLAPAGIADAPLSPLLTCIPSKKMNYFKIRDK", "length": 337 }, "evidence": [ { "id": "A0A8C2MXD2", "url": "https://omabrowser.org/oma/group/A0A8C2MXD2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2" } ], "pmid": "" }, { "name": "chromosome, centromeric region", "id": "GO:0000775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000775", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "chromosome segregation", "id": "GO:0007059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007059", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2" } ], "pmid": "" }, { "name": "CENP-A containing chromatin assembly", "id": "GO:0034080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034080", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXD2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 118, "end_pos": 120 }, { "start_pos": 217, "end_pos": 219 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MXH9-1", "uniprot_ac": "A0A8C2MXH9", "uniprot_id": "A0A8C2MXH9_CRIGR", "mass": { "chemical_mass": 65667.0, "monoisotopic_mass": 65667.0 }, "refseq": { "ac": "XP_027260143", "name": "tetratricopeptide repeat protein 39C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260143" }, "gene_names": [ { "name": "Ttc39c", "type": "recommended", "evidence": [ { "id": "A0A8C2MXH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9" } ] }, { "name": "Ttc39c", "type": "synonym", "evidence": [ { "id": "XP_027260143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260143" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 39C isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MXH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 39C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027260143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260143" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260143", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260143" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttc39c", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9", "locus": {} } ], "crossref": [ { "id": "100754711", "url": "https://www.ncbi.nlm.nih.gov/gene/100754711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754711", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754711", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MXH9", "url": "https://www.orthodb.org/?gene=A0A8C2MXH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31859", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31859", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31859:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31859:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10300", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10300", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260143", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260143", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MXH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MXH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FM51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FM51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGSEQQRPRRRDEGEAAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKSVDARKSAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYVDINALQELYQKKLTEEPLSSDAANDNHIVAEGVTEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLTYASESKDMKAPLATLALLWYHTVVRPFFALDGSDSKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAIDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDMDGAQLVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTRALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDPSVTGLKHLLLGAIHKCLGNSEDAVQFFQRAAKDELCRQNNLYVQPYACYELGCLLLGRPETVGRGRTLLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ", "length": 582, "header": "tr|A0A8C2MXH9-1|A0A8C2MXH9_CRIGR Isoform 1 of Tetratricopeptide repeat protein 39C isoform X2 OS=Cricetulus griseus OX=10029 GN=Ttc39c PE=3 SV=1 CANONICAL=A0A8C2MXH9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MXH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9/entry", "sequence": { "sequence": "MAGSEQQRPRRRDEGEAAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKSVDARKSAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYVDINALQELYQKKLTEEPLSSDAANDNHIVAEGVTEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLTYASESKDMKAPLATLALLWYHTVVRPFFALDGSDSKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAIDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDMDGAQLVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTRALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDPSVTGLKHLLLGAIHKCLGNSEDAVQFFQRAAKDELCRQNNLYVQPYACYELGCLLLGRPETVGRGRTLLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ", "length": 582, "header": "tr|A0A8C2MXH9-1|A0A8C2MXH9_CRIGR Isoform 1 of Tetratricopeptide repeat protein 39C isoform X2 OS=Cricetulus griseus OX=10029 GN=Ttc39c PE=3 SV=1 CANONICAL=A0A8C2MXH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHA8/entry", "sequence": { "sequence": "MIYSCPFRGACRKSCRVGPESCVFCRTEAYIKGGWILRKAWKIYNKCYVDINALQELYQKKLTEEPLSSDAANDNHIVAEGVTEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLTYASESKDMKAPLATLALLWYHTVVRPFFALDGSDSKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAIDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDMDGAQLVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTRALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDPSVTGLKHLLLGAIHKCLGNSEDAVQFFQRAAKDELCRQNNLYVQPYACYELGCLLLGRPETVGRGRTLLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ", "length": 458, "header": "tr|A0A9J7FHA8-1|A0A9J7FHA8_CRIGR Computationally mapped isoform of Tetratricopeptide repeat protein 39C isoform X4 OS=Cricetulus griseus OX=10029 GN=Ttc39c PE=3 SV=1 CANONICAL=A0A8C2MXH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FM51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FM51/entry", "sequence": { "sequence": "MSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKSVDARKSAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYVDINALQELYQKKLTEEPLSSDAANDNHIVAEGVTEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLTYASESKDMKAPLATLALLWYHTVVRPFFALDGSDSKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAIDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDMDGAQLVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTRALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDPSVTGLKHLLLGAIHKCLGNSEDAVQFFQRAAKDELCRQNNLYVQPYACYELGCLLLGRPETVGRGRTLLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ", "length": 522, "header": "tr|A0A9J7FM51-1|A0A9J7FM51_CRIGR Computationally mapped isoform of Tetratricopeptide repeat protein 39C isoform X3 OS=Cricetulus griseus OX=10029 GN=Ttc39c PE=3 SV=1 CANONICAL=A0A8C2MXH9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754711", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754711", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "otolith morphogenesis", "id": "GO:0032474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032474", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 312, "end_pos": 314 }, { "start_pos": 380, "end_pos": 382 }, { "start_pos": 461, "end_pos": 463 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MXJ5-1", "uniprot_ac": "A0A8C2MXJ5", "uniprot_id": "A0A8C2MXJ5_CRIGR", "mass": { "chemical_mass": 40206.0, "monoisotopic_mass": 40206.0 }, "refseq": { "ac": "XP_003512325", "name": "protein FAM50A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512325" }, "gene_names": [ { "name": "Fam50a", "type": "recommended", "evidence": [ { "id": "A0A8C2MXJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXJ5" } ] }, { "name": "Fam50a", "type": "synonym", "evidence": [ { "id": "XP_003512325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512325" } ] } ], "protein_names": [ { "name": "Protein FAM50A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MXJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXJ5/entry#names_and_taxonomy" } ] }, { "name": "protein FAM50A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003512325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512325" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 143 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615411.1) and transcript sequence (IACG01127289.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003512325.4. 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"OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MXL7", "url": "https://www.orthodb.org/?gene=A0A8C2MXL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46505:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46505:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00175", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00175", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495352", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495352", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MXL7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MXL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHAVFIPGLSRGTALWRLTASTLRHLTLTSIMKSKRKTDHLERTASALRREVVASAKVCEIAHESPTVKSLRLLVADKAFSFKAGQWVDFFIPGVSVVGGFSICSSPQLLEQERMIELAVKYTNHPPAIWVHNKCTLDSEVALRVGGEFFFDPQPTEAPRNLVLIAGGVGINPLLSILRHSADLHRDQANKGSSYEIGKIKLFYSAKNTSELLFKKNILDLVNEFPEKITCSLHVTKQTAQISEELKPYITEGRITEKEISNHVSAGTLFYICGPPPMTDFFSKQLEDSHVPKEHICFEKWW", "length": 303, "header": "tr|A0A8C2MXL7-1|A0A8C2MXL7_CRIGR Isoform 1 of Oxidoreductase NAD-binding domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Oxnad1 PE=4 SV=1 CANONICAL=A0A8C2MXL7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MXL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7/entry", "sequence": { "sequence": "MAHAVFIPGLSRGTALWRLTASTLRHLTLTSIMKSKRKTDHLERTASALRREVVASAKVCEIAHESPTVKSLRLLVADKAFSFKAGQWVDFFIPGVSVVGGFSICSSPQLLEQERMIELAVKYTNHPPAIWVHNKCTLDSEVALRVGGEFFFDPQPTEAPRNLVLIAGGVGINPLLSILRHSADLHRDQANKGSSYEIGKIKLFYSAKNTSELLFKKNILDLVNEFPEKITCSLHVTKQTAQISEELKPYITEGRITEKEISNHVSAGTLFYICGPPPMTDFFSKQLEDSHVPKEHICFEKWW", "length": 303, "header": "tr|A0A8C2MXL7-1|A0A8C2MXL7_CRIGR Isoform 1 of Oxidoreductase NAD-binding domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Oxnad1 PE=4 SV=1 CANONICAL=A0A8C2MXL7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE57/entry", "sequence": { "sequence": "MAHAVFIPGLSRGTALWRLTASTLRHLTLTSIMKSKRKTDHLERTASALRREVVASAKVCEIAHESPTVKSLRLLVADKAFSFKAGQWVDFFIPGVSVVGGFSICSSPQLLEQERMIELAVKYTNHPPAIWVHNKCTLDSEVALRVGGEFFFDPQPTEAPRNLVLIAGGVGINPLLSILRHSADLHRDQANKGSSYEIGKIKLFYSAKNTSELLFKVEISRKGSSKKLGKAYSIQMRINRHISPRTVNVSS", "length": 251, "header": "tr|A0A9J7KE57-1|A0A9J7KE57_CRIGR Computationally mapped isoform of Oxidoreductase NAD-binding domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Oxnad1 PE=4 SV=1 CANONICAL=A0A8C2MXL7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 157, "start_aa": "Thr", "end_pos": 157, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr157", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXL7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXL7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768576", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768576", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K466-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "Oxnad1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHVLIPGLSRGSVGAICTQAASWALPTSTLRSLTLASVMRSRRKTDHLERTATVLRREVMAAAKVCEITHESPSVKSLRLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPQQLERERIIELAVKYTNHPPAVWVHNKCTLDSEVALRVGGEFFFDPQPTDAPRNLVLIAGGVGINPLLSILRHSADLHRDHKEKRRGYDIGTIKLFYSAKNTSELLFKKNILDLVHEFPEKIACSFHVTKQTTQISSELKPYVTDGRITEKEIREHISAETLFYVCGPPPMTDFFSKHLESSHVPKEHICFEKWW", "length": 310 }, "evidence": [ { "id": "A0A8C2MXL7", "url": "https://omabrowser.org/oma/group/A0A8C2MXL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XF29-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "OXNAD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARVTTYMGFTIPHLLRSACRLCPAHSALVVLRHSASCYCTANGTIQSKRKMDHLERTANNFRQEVISQAKVCGITNESETVKRLRLAITNKDFTFKAGQWVDFFIPGVSVIGGFSMCSSPGLLEREGVLELAVKYTDHPPAHWIHTECTLDSEVALRVGGDFFFDPQPGDTPVKLVLIAGGVGINPLFSILLHVADLHGYQESKGNGYKMGTVKLYYSAKNTSELLFKKNILGLMSAFPGKITCRFHVTQQSSPICEELQPHVTEGRISEKDLEKHVSKDTLWYICGPPPMIESISELLYNSGVPRNCVFFEKWW", "length": 316 }, "evidence": [ { "id": "A0A8C2MXL7", "url": "https://omabrowser.org/oma/group/A0A8C2MXL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A3KP77-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "oxnad1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSRRRTDHLERTASVHRQMELFSARVCDIISESDTVKRLRLEVAHPDFSFRAGQWVDFFIPGVDTVGGFSICSSPGLLKREGAIELAVKYARHPPAHWIHTECSVDSQVAVRVGGNFYFDPQPSNPVVDLLLVAGGVGINPLYSILLHAADLHRHTHSHRYTPGHTHLCYSAKNTTELLFKDTIIDICHERPDKFSCHFHVTQQSSDIEPQLQPYTIRGRISAEELQRYVDPERTLCYLCGPPPMIEKVSSDLQSTGLPEDRILFEKWW", "length": 270 }, "evidence": [ { "id": "A0A8C2MXL7", "url": "https://omabrowser.org/oma/group/A0A8C2MXL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RS78-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "OXNAD1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTLMIPGLLRGSVGAICLQAASWRLTHRTLRHLTLSSLMKSKRKTDHLERTADVLRREVVSVAKVCGVAHESPSVKRLRLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLLEQERIIELAVKYTNHPPALWIHNQCTLDSEVAVRVGGEFFFDPQPADASRNLVLIAGGVGINPLLSILRHVADLHREWANKGSGYKVGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQISADLKPYITEGRLTEKEIRDHISKETLFYLCGPPPMTDFFSKELARSHIPREHICFEKWW", "length": 309 }, "evidence": [ { "id": "A0A8C2MXL7", "url": "https://omabrowser.org/oma/group/A0A8C2MXL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q58DM7-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "OXNAD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVVVIPRLLRGSLGAICTQAALLRSTPSAFRYLTRSSVMKSKRRPDHLERTADVVRQEVVSAAKVCGVASESPSVKRLCLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLLEQERMIELAVKHANHPPALWIHNQCTLDSEVAVRVGGEFFFDPKPTDASRNLVLIAGGVGINPLLSILRHAADLLRERASKGQGYEMGTVRLLYSAKDTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQITADLRPYITEGRITQKEIRDHISKETLFYICGPPPMTDFFSKELESSRVPREHICFEKWW", "length": 309 }, "evidence": [ { "id": "A0A8C2MXL7", "url": "https://omabrowser.org/oma/group/A0A8C2MXL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VE38-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "Oxnad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAHVALIPGLSRGSVGAVCTQAASWGLKASTLRHLTLASIIKSRRKTDHLERTASVLRREVMAAAKVCEITHESPSVKSLRLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPQRLERDRIIELAVKYADHPPAVWVHNKCTLDSEVALRVGGEFFFDPQPTDAPRNLILIAGGVGINPLLSILRHSADLHRDHADKGRSYEIGTVKLFYSAKNTSELLFKKDILDLVHEFPEKISCSFHVTKQTAQISAELKPYVTDGRITEKEIRDHISAETLFYVCGPPPMTDFFSKHLESCHVPKEHICFEKWW", "length": 311 }, "evidence": [ { "id": "A0A8C2MXL7", "url": "https://omabrowser.org/oma/group/A0A8C2MXL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96HP4-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "OXNAD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREIVSAAKVCGAASESPSVKSLRLLVADQDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLLEQERVIELAVKYTNHPPALWVHNTCTLDCEVAVRVGGEFFFDPQPADASRNLVLIAGGVGINPLLSILRHAADLLREQANKRNGYEIGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQINAELKPYITEGRITEKEIRDHISKETLFYICGPPPMTDFFSKQLENNHVPKEHICFEKWW", "length": 312 }, "evidence": [ { "id": "A0A8C2MXL7", "url": "https://omabrowser.org/oma/group/A0A8C2MXL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXL7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXL7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MXL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXL7" }, { "id": "PS51384", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51384" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAD-binding FR-type", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 163, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 157 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A8C2MXQ4-1", "uniprot_ac": "A0A8C2MXQ4", "uniprot_id": "A0A8C2MXQ4_CRIGR", "mass": { "chemical_mass": 14231.0, "monoisotopic_mass": 14231.0 }, "refseq": { "ac": "XP_003508162", "name": "otoraplin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508162" }, "gene_names": [ { "name": "Otor", "type": "recommended", "evidence": [ { "id": "A0A8C2MXQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXQ4" } ] }, { "name": "Otor", "type": "synonym", "evidence": [ { "id": "XP_003508162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508162" } ] } ], "protein_names": [ { "name": "Otoraplin", "type": "synonym", "evidence": [ { "id": "A0A8C2MXQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXQ4/entry#names_and_taxonomy" } ] }, { "name": "otoraplin", "type": "synonym", "evidence": [ { "id": "XP_003508162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508162" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614479.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307108" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXR8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXR8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem144", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXR8", "locus": {} } ], "crossref": [ { "id": "100763761", "url": "https://www.ncbi.nlm.nih.gov/gene/100763761", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012435", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012435", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763761", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763761", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MFFQWIV", "url": "https://omabrowser.org/oma/group/MFFQWIV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MXR8", "url": "https://www.orthodb.org/?gene=A0A8C2MXR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16119:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16119:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307108", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MXR8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MXR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSNGTDFTTGYISSAIAVLLFGSNFIPLKKYDTGDGMFLQWVLCAAIWLVALVINLILHCPKFWPFAMLGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNTLTGWASSRFGWFGMDVEEVSNPMLNYFGAGLSVVSVFTFLFIKSETNTPCNVDNTPLMTEPVINTTEDFRAESTWMDRLSTKYSRIVGCSLAVISGILYGSTFVPIIYIKDHSKRNESIYAGASQYDLDYVFAHSSGIFLTSTVYFMVYCVAMKNRPRLYPEAVLPGFLSGVLWAIATCCWFIANHSLSAVISFPIITAGPGLIAALWGIFIFKEIQGLRNYLLMFLAFCIILTGVLCTAFSKI", "length": 347, "header": "tr|A0A8C2MXR8-1|A0A8C2MXR8_CRIGR Isoform 1 of Transmembrane protein 144 OS=Cricetulus griseus OX=10029 GN=Tmem144 PE=3 SV=1 CANONICAL=A0A8C2MXR8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MXR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXR8/entry", "sequence": { "sequence": "MSSNGTDFTTGYISSAIAVLLFGSNFIPLKKYDTGDGMFLQWVLCAAIWLVALVINLILHCPKFWPFAMLGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNTLTGWASSRFGWFGMDVEEVSNPMLNYFGAGLSVVSVFTFLFIKSETNTPCNVDNTPLMTEPVINTTEDFRAESTWMDRLSTKYSRIVGCSLAVISGILYGSTFVPIIYIKDHSKRNESIYAGASQYDLDYVFAHSSGIFLTSTVYFMVYCVAMKNRPRLYPEAVLPGFLSGVLWAIATCCWFIANHSLSAVISFPIITAGPGLIAALWGIFIFKEIQGLRNYLLMFLAFCIILTGVLCTAFSKI", "length": 347, "header": "tr|A0A8C2MXR8-1|A0A8C2MXR8_CRIGR Isoform 1 of Transmembrane protein 144 OS=Cricetulus griseus OX=10029 GN=Tmem144 PE=3 SV=1 CANONICAL=A0A8C2MXR8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MXV8-1", "uniprot_ac": "A0A8C2MXV8", "uniprot_id": "A0A8C2MXV8_CRIGR", "mass": { "chemical_mass": 224418.0, "monoisotopic_mass": 224418.0 }, "refseq": { "ac": "XP_027248626", "name": "PHD finger protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248626" }, "gene_names": [ { "name": "Phf3", "type": "recommended", "evidence": [ { "id": "A0A8C2MXV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" } ] }, { "name": "Phf3", "type": "synonym", "evidence": [ { "id": "XP_027248626", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248626" } ] } ], "protein_names": [ { "name": "PHD finger protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027248626", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248626" }, { "id": "A0A8C2MXV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248626", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248626" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Phf3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8", "locus": {} } ], "crossref": [ { "id": "cd15638", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15638", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21548", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21548", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763501", "url": "https://www.ncbi.nlm.nih.gov/gene/100763501", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003618", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003618", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763501", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763501", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RQPERCQ", "url": "https://omabrowser.org/oma/group/RQPERCQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MXV8", "url": "https://www.orthodb.org/?gene=A0A8C2MXV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F1D4", "url": "https://www.orthodb.org/?gene=A0A9J7F1D4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11477", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11477", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11477:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11477:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07500", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07500", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248626", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248626", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MXV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MXV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2A7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSTSQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSTKKPPGKTVSSPKVGVKPSERCQSKEDLYTALKSEYPKENRRSSRHAEPIDVVPEVSASSVDSSVSPCVEMKDEAELDSKHACNNNQGELNVPSHELNCPLLSESCASVEEKKNETLMECKSKTDCSPLFKFSDKEEEQNDVVSGEMDDTIEERSAVGKLEQEAEEIKLPCEGDQMTEEPGPSDVFSDSACTDKNRTEKNEAAECHLELKSTVALGDKAENSLQRNQMETSLGYCEDMASNDVQLQSTEFHKSNLEDVDTCAFEPESTTLENTICDVPDQNSKQLNITQSIKVDSHETADLQDDRSSLEPKSIKSKHIKSNAKQSMTTETPRKTVAVKHEVVHSKTKSNVKSVKRNADEPEPQHDLQRPVKVRKGQLEKDLKNQSCNSGVKSVKSQAHSVLKKTSQDQNVMQVSKPLTHSLSDKLHGHSGSSKEPHPVAQSGHSLHSSQKLSHKPQQQAPVVKATSHGKDEHEHPGSEHLKEEDKLKLKKPEKNLQPRQRRSSRSFSLDEPPLFIPDNIATVKREGSDHTSSVESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDISDTDILEDQTTVEAHSEEKTMECEKLGSSKHMVANDKNKYMDDAVKHKVKILKRESGEGKTSSDSRDNDIKKWQLAPLRKLGQPALPRRSSEEKGEKTHKESTANTCTVEKASKSGTHEKQEMKKKKIEKGGPHVHPPAAASKPSADQIRQSVRHSLKDILMRRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEATMEMQEPSANKSLEKTEGSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKNVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTTETPETAPVALPPDKKGKMESSMEETAEEENDFFNSFTTVLHKQRNKPLQSLQEDLPTTAEPLMEVSRQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVFEQAQPVGEQSTLKEIPFISDQTSPKLEKIDKVEVTEGEAKEIKVKVDNSSESTGKNSGVEETSLVGSSSISPGPLTSLSLRGKPPDVSTEAFLTNLSKQEETVENKERTLKRQLLQEQESTLQDNRTSNNSPCRPSTGKGNIDGSAGCSESLIANTRSPQFINLKRDPRQAAGRSQQTTSESKEAESCRNGDKNALPGPSHSKEPLAEPVSGEGKLSSVEKNSCVEQNDDSEAAQNPSSVENLNSSQTEQANPLQEDILTQNIETVNPFRRGSATASSHFEAGSTCQSEFPSKSINFTSRSTSPRASASFSSMRPQQPSVQHLKSSPPGFPFPAPPNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPMVPWPPVHLPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHDKEWEQESERHRHRDRSQDRDRKSKEEGHKERARVSHSDGTTDGKAGRESKNADKKPDHEKEKEREKNKHREGDKDRERYRKDRDHTDRAKSKR", "length": 2005, "header": "tr|A0A8C2MXV8-1|A0A8C2MXV8_CRIGR Isoform 1 of PHD finger protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Phf3 PE=4 SV=1 CANONICAL=A0A8C2MXV8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MXV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8/entry", "sequence": { "sequence": "MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSTSQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSTKKPPGKTVSSPKVGVKPSERCQSKEDLYTALKSEYPKENRRSSRHAEPIDVVPEVSASSVDSSVSPCVEMKDEAELDSKHACNNNQGELNVPSHELNCPLLSESCASVEEKKNETLMECKSKTDCSPLFKFSDKEEEQNDVVSGEMDDTIEERSAVGKLEQEAEEIKLPCEGDQMTEEPGPSDVFSDSACTDKNRTEKNEAAECHLELKSTVALGDKAENSLQRNQMETSLGYCEDMASNDVQLQSTEFHKSNLEDVDTCAFEPESTTLENTICDVPDQNSKQLNITQSIKVDSHETADLQDDRSSLEPKSIKSKHIKSNAKQSMTTETPRKTVAVKHEVVHSKTKSNVKSVKRNADEPEPQHDLQRPVKVRKGQLEKDLKNQSCNSGVKSVKSQAHSVLKKTSQDQNVMQVSKPLTHSLSDKLHGHSGSSKEPHPVAQSGHSLHSSQKLSHKPQQQAPVVKATSHGKDEHEHPGSEHLKEEDKLKLKKPEKNLQPRQRRSSRSFSLDEPPLFIPDNIATVKREGSDHTSSVESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDISDTDILEDQTTVEAHSEEKTMECEKLGSSKHMVANDKNKYMDDAVKHKVKILKRESGEGKTSSDSRDNDIKKWQLAPLRKLGQPALPRRSSEEKGEKTHKESTANTCTVEKASKSGTHEKQEMKKKKIEKGGPHVHPPAAASKPSADQIRQSVRHSLKDILMRRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEATMEMQEPSANKSLEKTEGSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKNVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTTETPETAPVALPPDKKGKMESSMEETAEEENDFFNSFTTVLHKQRNKPLQSLQEDLPTTAEPLMEVSRQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVFEQAQPVGEQSTLKEIPFISDQTSPKLEKIDKVEVTEGEAKEIKVKVDNSSESTGKNSGVEETSLVGSSSISPGPLTSLSLRGKPPDVSTEAFLTNLSKQEETVENKERTLKRQLLQEQESTLQDNRTSNNSPCRPSTGKGNIDGSAGCSESLIANTRSPQFINLKRDPRQAAGRSQQTTSESKEAESCRNGDKNALPGPSHSKEPLAEPVSGEGKLSSVEKNSCVEQNDDSEAAQNPSSVENLNSSQTEQANPLQEDILTQNIETVNPFRRGSATASSHFEAGSTCQSEFPSKSINFTSRSTSPRASASFSSMRPQQPSVQHLKSSPPGFPFPAPPNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPMVPWPPVHLPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHDKEWEQESERHRHRDRSQDRDRKSKEEGHKERARVSHSDGTTDGKAGRESKNADKKPDHEKEKEREKNKHREGDKDRERYRKDRDHTDRAKSKR", "length": 2005, "header": "tr|A0A8C2MXV8-1|A0A8C2MXV8_CRIGR Isoform 1 of PHD finger protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Phf3 PE=4 SV=1 CANONICAL=A0A8C2MXV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1D4/entry", "sequence": { "sequence": "MDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSTKKPPGKTVSSPKVGVKPSERCQSKEDLYTALKSEYPKENRRSSRHAEPIDVVPEVSASSVDSSVSPCVEMKDEAELDSKHACNNNQGELNVPSHELNCPLLSESCASVEEKKNETLMECKSKTDCSPLFKFSDKEEEQNDVVSGEMDDTIEERSAVGKLEQEAEEIKLPCEGDQMTEEPGPSDVFSDSACTDKNRTEKNEAAECHLELKSTVALGDKAENSLQRNQMETSLGYCEDMASNDVQLQSTEFHKSNLEDVDTCAFEPESTTLENTICDVPDQNSKQLNITQSIKVDSHETADLQDDRSSLEPKSIKSKHIKSNAKQSMTTETPRKTVAVKHEVVHSKTKSNVKSVKRNADEPEPQHDLQRPVKVRKGQLEKDLKNQSCNSGVKSVKSQAHSVLKKTSQDQNVMQVSKPLTHSLSDKLHGHSGSSKEPHPVAQSGHSLHSSQKLSHKPQQQAPVVKATSHGKDEHEHPGSEHLKEEDKLKLKKPEKNLQPRQRRSSRSFSLDEPPLFIPDNIATVKREGSDHTSSVESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDISDTDILEDQTTVEAHSEEKTMECEKLGSSKHMVANDKNKYMDDAVKHKVKILKRESGEGKTSSDSRDNDIKKWQLAPLRKLGQPALPRRSSEEKGEKTHKESTANTCTVEKASKSGTHEKQEMKKKKIEKGGPHVHPPAAASKPSADQIRQSVRHSLKDILMRRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEATMEMQEPSANKSLEKTEGSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKNVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTTETPETAPVALPPDKKGKMESSMEETAEEENDFFNSFTTVLHKQRNKPLQSLQEDLPTTAEPLMEVSRQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVFEQAQPVGEQSTLKEIPFISDQTSPKLEKIDKVEVTEGEAKEIKVKVDNSSESTGKNSGVEETSLVGSSSISPGPLTSLSLRGKPPDVSTEAFLTNLSKQEETVENKERTLKRQLLQEQESTLQDNRTSNNSPCRPSTGKGNIDGSAGCSESLIANTRSPQFINLKRDPRQAAGRSQQTTSESKEAESCRNGDKNALPGPSHSKEPLAEPVSGEGKLSSVEKNSCVEQNDDSEAAQNPSSVENLNSSQTEQANPLQEDILTQNIETVNPFRRGSATASSHFEAGSTCQSEFPSKSINFTSRSTSPRASASFSSMRPQQPSVQHLKSSPPGFPFPAPPNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPMVPWPPVHLPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHDKEWEQESERHRHRDRSQDRDRKSKEEGHKERARVSHSDGTTDGKAGRESKNADKKPDHEKEKEREKNKHREGDKDRERYRKDRDHTDRAKSKR", "length": 1917, "header": "tr|A0A9J7F1D4-1|A0A9J7F1D4_CRIGR Computationally mapped isoform of PHD finger protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Phf3 PE=4 SV=1 CANONICAL=A0A8C2MXV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2A7/entry", "sequence": { "sequence": "MLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSTKKPPGKTVSSPKVGVKPSERCQSKEDLYTALKSEYPKENRRSSRHAEPIDVVPEVSASSVDSSVSPCVEMKDEAELDSKHACNNNQGELNVPSHELNCPLLSESCASVEEKKNETLMECKSKTDCSPLFKFSDKEEEQNDVVSGEMDDTIEERSAVGKLEQEAEEIKLPCEGDQMTEEPGPSDVFSDSACTDKNRTEKNEAAECHLELKSTVALGDKAENSLQRNQMETSLGYCEDMASNDVQLQSTEFHKSNLEDVDTCAFEPESTTLENTICDVPDQNSKQLNITQSIKVDSHETADLQDDRSSLEPKSIKSKHIKSNAKQSMTTETPRKTVAVKHEVVHSKTKSNVKSVKRNADEPEPQHDLQRPVKVRKGQLEKDLKNQSCNSGVKSVKSQAHSVLKKTSQDQNVMQVSKPLTHSLSDKLHGHSGSSKEPHPVAQSGHSLHSSQKLSHKPQQQAPVVKATSHGKDEHEHPGSEHLKEEDKLKLKKPEKNLQPRQRRSSRSFSLDEPPLFIPDNIATVKREGSDHTSSVESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDISDTDILEDQTTVEAHSEEKTMECEKLGSSKHMVANDKNKYMDDAVKHKVKILKRESGEGKTSSDSRDNDIKKWQLAPLRKLGQPALPRRSSEEKGEKTHKESTANTCTVEKASKSGTHEKQEMKKKKIEKGGPHVHPPAAASKPSADQIRQSVRHSLKDILMRRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEATMEMQEPSANKSLEKTEGSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKNVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTTETPETAPVALPPDKKGKMESSMEETAEEENDFFNSFTTVLHKQRNKPLQSLQEDLPTTAEPLMEVSRQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVFEQAQPVGEQSTLKEIPFISDQTSPKLEKIDKVEVTEGEAKEIKVKVDNSSESTGKNSGVEETSLVGSSSISPGPLTSLSLRGKPPDVSTEAFLTNLSKQEETVENKERTLKRQLLQEQESTLQDNRTSNNSPCRPSTGKGNIDGSAGCSESLIANTRSPQFINLKRDPRQAAGRSQQTTSESKEAESCRNGDKNALPGPSHSKEPLAEPVSGEGKLSSVEKNSCVEQNDDSEAAQNPSSVENLNSSQTEQANPLQEDILTQNIETVNPFRRGSATASSHFEAGSTCQSEFPSKSINFTSRSTSPRASASFSSMRPQQPSVQHLKSSPPGFPFPAPPNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPMVPWPPVHLPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHDKEWEQESERHRHRDRSQDRDRKSKEEGHKERARVSHSDGTTDGKAGRESKNADKKPDHEKEKEREKNKHREGDKDRERYRKDRDHTDRAKSKR", "length": 1958, "header": "tr|A0A9J7F2A7-1|A0A9J7F2A7_CRIGR Computationally mapped isoform of PHD finger protein 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Phf3 PE=4 SV=1 CANONICAL=A0A8C2MXV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E9/entry", "sequence": { "sequence": "MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSTSQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCSTEQVRSLRQSTIAKRSNAAPLSTKKPPGKTVSSPKVGVKPSERCQSKEDLYTALKSEYPKENRRSSRHAEPIDVVPEVSASSVDSSVSPCVEMKDEAELDSKHACNNNQGELNVPSHELNCPLLSESCASVEEKKNETLMECKSKTDCSPLFKFSDKEEEQNDVVSGEMDDTIEERSAVGKLEQEAEEIKLPCEGDQMTEEPGPSDVFSDSACTDKNRTEKNEAAECHLELKSTVALGDKAENSLQRNQMETSLGYCEDMASNDVQLQSTEFHKSNLEDVDTCAFEPESTTLENTICDVPDQNSKQLNITQSIKVDSHETADLQDDRSSLEPKSIKSKHIKSNAKQSMTTETPRKTVAVKHEVVHSKTKSNVKSVKRNADEPEPQHDLQRPVKVRKGQLEKDLKNQSCNSGVKSVKSQAHSVLKKTSQDQNVMQVSKPLTHSLSDKLHGHSGSSKEPHPVAQSGHSLHSSQKLSHKPQQQAPVVKATSHGKDEHEHPGSEHLKEEDKLKLKKPEKNLQPRQRRSSRSFSLDEPPLFIPDNIATVKREGSDHTSSVESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDISDTDILEDQTTVEAHSEEKTMECEKLGSSKHMVANDKNKYMDDAVKHKVKILKRESGEGKTSSDSRDNDIKKWQLAPLRKLGQPALPRRSSEEKGEKTHKESTANTCTVEKASKSGTHEKQEMKKKKIEKGGPHVHPPAAASKPSADQIRQSVRHSLKDILMRRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEATMEMQEPSANKSLEKTEGSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKNVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTTETPETAPVALPPDKKGKMESSMEETAEEENDFFNSFTTVLHKQRNKPLQSLQEDLPTTAEPLMEVSRQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVFEQAQPVGEQSTLKEIPFISDQTSPKLEKIDKVEVTEGEAKEIKVKVDNSSESTGKNSGVEETSLVGSSSISPGPLTSLSLRGKPPDVSTEAFLTNLSKQEETVENKERTLKRQLLQEQESTLQDNRTSNNSPCRPSTGKGNIDGSAGCSESLIANTRSPQFINLKRDPRQAAGRSQQTTSESKEAESCRNGDKNALPGPSHSKEPLAEPVSGEGKLSSVEKNSCVEQNDDSEAAQNPSSVENLNSSQTEQANPLQEDILTQNIETVNPFRRGSATASSHFEAGSTCQSEFPSKSINFTSRSTSPRASASFSSMRPQQPSVQHLKSSPPGFPFPAPPNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPMVPWPPVHLPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHDKEWEQESERHRHRDRSQDRDRKSKEEGHKERARVSHSDGTTDGKAGRESKNADKKPDHEKEKEREKNKHREGDKDRERYRKDRDHTDRAKSKR", "length": 1951, "header": "tr|A0A9J7F6E9-1|A0A9J7F6E9_CRIGR Computationally mapped isoform of PHD finger protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Phf3 PE=4 SV=1 CANONICAL=A0A8C2MXV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK9/entry", "sequence": { "sequence": "MVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDISDTDILEDQTTVEAHSEEKTMECEKLGSSKHMVANDKNKYMDDAVKHKVKILKRESGEGKTSSDSRDNDIKKWQLAPLRKLGQPALPRRSSEEKGEKTHKESTANTCTVEKASKSGTHEKQEMKKKKIEKGGPHVHPPAAASKPSADQIRQSVRHSLKDILMRRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEATMEMQEPSANKSLEKTEGSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKNVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTTETPETAPVALPPDKKGKMESSMEETAEEENDFFNSFTTVLHKQRNKPLQSLQEDLPTTAEPLMEVSRQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVFEQAQPVGEQSTLKEIPFISDQTSPKLEKIDKVEVTEGEAKEIKVKVDNSSESTGKNSGVEETSLVGSSSISPGPLTSLSLRGKPPDVSTEAFLTNLSKQEETVENKERTLKRQLLQEQESTLQDNRTSNNSPCRPSTGKGNIDGSAGCSESLIANTRSPQFINLKRDPRQAAGRSQQTTSESKEAESCRNGDKNALPGPSHSKEPLAEPVSGEGKLSSVEKNSCVEQNDDSEAAQNPSSVENLNSSQTEQANPLQEDILTQNIETVNPFRRGSATASSHFEAGSTCQSEFPSKSINFTSRSTSPRASASFSSMRPQQPSVQHLKSSPPGFPFPAPPNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPMVPWPPVHLPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHDKEWEQESERHRHRDRSQDRDRKSKEEGHKERARVSHSDGTTDGKAGRESKNADKKPDHEKEKEREKNKHREGDKDRERYRKDRDHTDRAKSKR", "length": 1293, "header": "tr|A0A9J7HBK9-1|A0A9J7HBK9_CRIGR Computationally mapped isoform of PHD finger protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Phf3 PE=4 SV=1 CANONICAL=A0A8C2MXV8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFF7/entry", "sequence": { "sequence": "MKDEAELDSKHACNNNQGELNVPSHELNCPLLSESCASVEEKKNETLMECKSKTDCSPLFKFSDKEEEQNDVVSGEMDDTIEERSAVGKLEQEAEEIKLPCEGDQMTEEPGPSDVFSDSACTDKNRTEKNEAAECHLELKSTVALGDKAENSLQRNQMETSLGYCEDMASNDVQLQSTEFHKSNLEDVDTCAFEPESTTLENTICDVPDQNSKQLNITQSIKVDSHETADLQDDRSSLEPKSIKSKHIKSNAKQSMTTETPRKTVAVKHEVVHSKTKSNVKSVKRNADEPEPQHDLQRPVKVRKGQLEKDLKNQSCNSGVKSVKSQAHSVLKKTSQDQNVMQVSKPLTHSLSDKLHGHSGSSKEPHPVAQSGHSLHSSQKLSHKPQQQAPVVKATSHGKDEHEHPGSEHLKEEDKLKLKKPEKNLQPRQRRSSRSFSLDEPPLFIPDNIATVKREGSDHTSSVESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDISDTDILEDQTTVEAHSEEKTMECEKLGSSKHMVANDKNKYMDDAVKHKVKILKRESGEGKTSSDSRDNDIKKWQLAPLRKLGQPALPRRSSEEKGEKTHKESTANTCTVEKASKSGTHEKQEMKKKKIEKGGPHVHPPAAASKPSADQIRQSVRHSLKDILMRRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEATMEMQEPSANKSLEKTEGSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKNVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTTETPETAPVALPPDKKGKMESSMEETAEEENDFFNSFTTVLHKQRNKPLQSLQEDLPTTAEPLMEVSRQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVFEQAQPVGEQSTLKEIPFISDQTSPKLEKIDKVEVTEGEAKEIKVKVDNSSESTGKNSGVEETSLVGSSSISPGPLTSLSLRGKPPDVSTEAFLTNLSKQEETVENKERTLKRQLLQEQESTLQDNRTSNNSPCRPSTGKGNIDGSAGCSESLIANTRSPQFINLKRDPRQAAGRSQQTTSESKEAESCRNGDKNALPGPSHSKEPLAEPVSGEGKLSSVEKNSCVEQNDDSEAAQNPSSVENLNSSQTEQANPLQEDILTQNIETVNPFRRGSATASSHFEAGSTCQSEFPSKSINFTSRSTSPRASASFSSMRPQQPSVQHLKSSPPGFPFPAPPNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPMVPWPPVHLPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHDKEWEQESERHRHRDRSQDRDRKSKEEGHKERARVSHSDGTTDGKAGRESKNADKKPDHEKEKEREKNKHREGDKDRERYRKDRDHTDRAKSKR", "length": 1779, "header": "tr|A0A9J7KFF7-1|A0A9J7KFF7_CRIGR Computationally mapped isoform of PHD finger protein 3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Phf3 PE=4 SV=1 CANONICAL=A0A8C2MXV8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763501", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763501", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287B6Q0-1", "protein_name": "PHD finger protein 3", "gene_name": "PHF3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSTSQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRNLRDKVEENSVRSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLNSTKKASGKTVSAPKAGVKQPERCQVKEEVGASPKLEHHKESRRSSRHAGQMEAAVSSCLEMQDEAGIDSEQKCNNQGEANMPSHELNCPLLSETCVSIEEKKNEAQMECQTKTVSNPFFKLPDKEEHERNDSISGKMEGTIVEELKAKGEVEQESKIVRVSHEDDHVIDEPASSAAFSGDAAYTNPSKIEENLVGLSGSVDEANECSLELKNTMEVADKAENPLQRNEIEALAYCKDTESNDKQLEGTRFNKSNLEVVNTGALEPESNTVDNAIYDTPDQSSKQLNIVESIKMESHETANLQNDRDSLSSSNSCLESKSIKSKHTKPSVHSKQTVASDAQKKTVTAKHELIPNKTKVNVKSVKRNADESESKQNFHRPVKVRKKQVDKASNIQSCNSGVKSVKNQAHSVFKKTSQDQNLVQISKPLTHSLSDKPHGHPSCSKEPHHSAQTGHLLHSNQKQCHKPQQLAPAVKTNSHVKEEPEHTGGVEHFKEEDKLKFKKPEKNLQPRQRRSSKSFSLDEPPLFIPDNIATIKREGSDHSSSFESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCCAEEDKKSEIVDPDILGNQAKVEVHSEDKAMEYEKLGLSKHTTTNDKTKCVDDTVKHKVKILKRESGEGKSSSDCRDSEIKKWQLAPLRKMGQPVLPRRSSEEKGEKIPKESTTVICTGEKASKPGAHEKQEIKKKKMEKGTPSVHPPAAPAPKPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLRGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEAGMEIQEPTANRSMEKTEGSEKPREEIDSMSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKKVKVVVGVSRKHSDNEAESIADALSSTSNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGATDKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRQHSATAGTSHTAETPESVPATLPPDKKSKIEVSTEEAPEEENDFFNSFTTVLHKQRNKPQQALQEDLPAVIEPLVEVTKQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVYEQAQSGLEQNTLKEIPFLNEQANPKIEKIDTAEAADDEAKEVKVKGENLSESTGDSVEGGEEAPGMGASSVSPGPLTGLSLRGKPPDVSTEAFLTNLSIQSKQEETVESKEKALKRQLPQDQETNLQDNRTSNTSSPCRSVVGKGNIDGSASCSESLVAHTTRSPQFINLKRDPRQAAGRSQQAPPTESTDGESCQNGEKHPVPGPPHQEHLTEQSSVEEKLPSVEKNSCVQQSDDSGVVQNSPSVENIHTSQTEQAKPLQEDTVMQNIETVHPFRRGSAAASHFEVGNTCQSEFPSKSISFTSRSTSPRTSANFSPIRPQQPNLQHLKSSPPGFPFPGPPNFPPQSMFGFPPHLPPPLLPPPGFGFAQNPMVPWPPVVHLAGQQQRMMGPLSQASRYIGPQNFYQVKDIRRPERRHSDPWGRQDQPQLDRPFNRGKGDRQRFYSDSHHLKRERHEKEWEPESERHRRRDRAQDKERDRKSRDEGHKGKERARLSHGDRGADGRASRDSRSVDRKPDKPKSEDQERDKEREKSKHREGEKDRDRHHKDRDHADRAKSKR", "length": 2032 }, "evidence": [ { "id": "A0A8C2MXV8", "url": "https://omabrowser.org/oma/group/A0A8C2MXV8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0X5R8-1", "protein_name": "PHD finger protein 3", "gene_name": "PHF3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIFFLSFYRAERHTGLFMDIVDTFNHLIPTEHLDDALFLGSNPENEVCEDFSTSQSVLEDSLKNMLSDKDPMLGSASAQFCLPVLDSNDPNFQMPCSTVVGLDDIMDEEGVKESGNDAIDEDELTVHNRNLRSRLEETSVASPRKSPRLMAQEPVRSLRQSTLAKRSNIAPVASTKKSAVKSGSATKTGQRQQEKSPAKEAGVATPLKVEQPKEVRRSTRRSGQTEGTVVASQSTKSIPGPDEIHEVKSEPLEQAKVEETSQELSSNSGGACSLPEETKEISEIATKAESGNFDSVCSADPEITALNDKANDVNDSMGSEASSEEKTENKTVELEKITEEQSGLTGKTNDPSSVCVNQSEIDETFSNLSGSVEDGVECRLGSCSVEVHDENTLSVKECVTEPVDDGKGLEKTVTLSEKLLDSTEFDNKDLKSEEFTSVDPGNSILESNVLDHTSQNVRQQINSTKVEDSDSLKFQVDDKQINIPSKCEKNMKPRHSKFVVENKQNMTVGIEQKSSTTQQDVKHSRTRADFAVSSLHSSSSASLKRNADEQESHQHPNNPVKIRKKQTDLALKAKSHLTAATVKKQSNTMLKKIPRVQASGLVHKSSVQRVIEKSTQSSSKDTHHSGHPVPGHISNLGQKQVQKHQLASVLKTNSSTKEELEAKDAPMVEHVKEDDKEKNKPKRTDKNLQPRQRRSSKSLSLDEPPLFIPDNISTVKREGLEHTPASESKHVWVPNKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCCAEEDKKAECLDQSVLDTQVKIDSNKEEKTIEYEKPGMSKQGPTCNLNVGTEKGKQTEDTGKHKVKIFKRESGDGKNLSESRDSDTKKGQHVPARKVSQTAVIPRRSSEEKGEKISKESLSVVEKSTKSGVHEKQEIKKKKNEKGPISATHLPNVPASKPSADQIRHSVKQSLKEILMKRLTDSSLKIPEERAAKVATRIERELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIKMSPEELASKELAAWRQRENRHTIEMIEKEQREVERRPITKITHKGEIEIESETPMKEQEVMEIQEPNMMKLHEKSEEAEKDKEGNESASPDTTSQHKNHLFDLNCKICIGRMAPPTDDDLSAKKVKVSVGVARKQSDNEAESIADALSSTSCILASELLEDDKQDSSKSSFPTLPKSETPGTVECESLFLARLNFIWKGFINMPSVAKFVIKAYPVSGSFEYLTEDLPDSIQVGGRISPHTVWEYVEKIKASGTKEICVVRFTPVTEEDQISYALLFAYFSSRKRYGVAANNMKQVKDLYLIPLGSSDKVPHHLVPFDGPGIEIHRPNLLLGLIIRQKMKRQISAVTSVTSSFVDEVSESTLSSVPPEKKSKPSKPEVSHNELALEEEEENDFFNSFTTVLHKQRNKPQQSNIEDVPAVIEPLVESTKHEPPKPLRFLPGVLVGWENQPSTLELANKPLPVDDILQSLLGTTGQVSEQSKPEASPSEDIPLLNEQATLKEENMDVDEVTAEVSETKASSDDTQESTNATVGPADAAVVGSSSATRNAGTLLGLSLKGKPPDVSTEAFLANLSAQSQNKETEESKENDSKWQIPDKDNVTQEIRRTTNSSFSSSSNAGKSNENNTNVSSVEGTTGNTSKSPPFINLKRDPRQAAGRNQQTNASESKEGDVSKNEDQQVVSGNDQVEPENKQSSGEIGLSLYPSDAQTNEMQYSSTATKTDNACASQVEDTKQSQEDAMQNIEALNSFRRGPAATSSHFETENSSCSEFISKVPSPVTGGNFSSVRPPQQNFQHPKSNPPGFQFQAPAPPNFPPQNSPMFGFPPHLPPQLLPPPGFGFPQNPMMPWPPVGHLSGQPPPYTGPIAQGLPVAHKQSRFVGPENFFQSKDNRRPERRHSDPWGRQEQHVERGFSRGKNDQQRQRFYSDSHHQKKERHEKDWNNEKYWEQDSERNRRRDRNQEKERERKSREEGHRDKERLRLPHSDRGADGKSPRETRNPEKKTEKPKPEEQAQEKDKEREKSKEKHRERESEKSRDRHRDHSDRSKSKR", "length": 2082 }, "evidence": [ { "id": "A0A8C2MXV8", "url": "https://omabrowser.org/oma/group/A0A8C2MXV8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q92576-1", "protein_name": "PHD finger protein 3", "gene_name": "PHF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSASQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRNLRDKVEENSVRSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPERSQVKEEVCMSLKPEYHKENRRCSRNSGQIEVVPEVSVSSSHSSVSSCLEMKDEDGLDSKHKCNNPGEIDVPSHELNCSLLSETCVTIGEKKNEALMECKAKPVGSPLFKFSDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDAACTNPNKTENSLVGLPSCVDEVTECNLELKDTMGIADKTENTLERNKIEPLGYCEDAESNRQLESTEFNKSNLEVVDTSTFGPESNILENAICDVPDQNSKQLNAIESTKIESHETANLQDDRNSQSSSVSYLESKSVKSKHTKPVIHSKQNMTTDAPKKIVAAKYEVIHSKTKVNVKSVKRNTDVPESQQNFHRPVKVRKKQIDKEPKIQSCNSGVKSVKNQAHSVLKKTLQDQTLVQIFKPLTHSLSDKSHAHPGCLKEPHHPAQTGHVSHSSQKQCHKPQQQAPAMKTNSHVKEELEHPGVEHFKEEDKLKLKKPEKNLQPRQRRSSKSFSLDEPPLFIPDNIATIRREGSDHSSSFESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCCAEEDKKTEILDPDTLENQATVEFHSGDKTMECEKLGLSKHTTNDRTKYIDDTVKHKVKILKRESGEGRNSSDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKSEKIPKESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHPAASASKPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEAAMEIQEPAANKSLEKPEGSEKQKEEVDSMSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSPKKVKVVVGVARKHSDNEAESIADALSSTSNILASEFFEEEKQESPKSTFSPAPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGATDKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRQHSACASTSHIAETPESAPPIALPPDKKSKIEVSTEEAPEEENDFFNSFTTVLHKQRNKPQQNLQEDLPTAVEPLMEVTKQEPPKPLRFLPGVLIGWENQPTTLELANKPLPVDDILQSLLGTTGQVYDQAQSVMEQNTVKEIPFLNEQTNSKIEKTDNVEVTDGENKEIKVKVDNISESTDKSAEIETSVVGSSSISAGSLTSLSLRGKPPDVSTEAFLTNLSIQSKQEETVESKEKTLKRQLQEDQENNLQDNQTSNSSPCRSNVGKGNIDGNVSCSENLVANTARSPQFINLKRDPRQAAGRSQPVTTSESKDGDSCRNGEKHMLPGLSHNKEHLTEQINVEEKLCSAEKNSCVQQSDNLKVAQNSPSVENIQTSQAEQAKPLQEDILMQNIETVHPFRRGSAVATSHFEVGNTCPSEFPSKSITFTSRSTSPRTSTNFSPMRPQQPNLQHLKSSPPGFPFPGPPNFPPQSMFGFPPHLPPPLLPPPGFGFAQNPMVPWPPVVHLPGQPQRMMGPLSQASRYIGPQNFYQVKDIRRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHEKEWEQESERHRRRDRSQDKDRDRKSREEGHKDKERARLSHGDRGTDGKASRDSRNVDKKPDKPKSEDYEKDKEREKSKHREGEKDRDRYHKDRDHTDRTKSKR", "length": 2039 }, "evidence": [ { "id": "A0A8C2MXV8", "url": "https://omabrowser.org/oma/group/A0A8C2MXV8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MXV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1064, "end_pos": 1066, "annotation": "n_glycosylation_sequon" }, { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1510, "end_pos": 1512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1557, "end_pos": 1559, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1587, "end_pos": 1589, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1591, "end_pos": 1593, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1706, "end_pos": 1708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1758, "end_pos": 1760, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MXV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 698, "end_pos": 753, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MXV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MXV8" }, { "id": "PS51321", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51321" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TFIIS central", "eco_id": "ECO_0000259", "start_pos": 909, "end_pos": 1028, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1064, "end_pos": 1066 }, { "start_pos": 111, "end_pos": 113 }, { "start_pos": 1510, "end_pos": 1512 }, { "start_pos": 1557, "end_pos": 1559 }, { "start_pos": 1587, "end_pos": 1589 }, { "start_pos": 1591, "end_pos": 1593 }, { "start_pos": 1706, "end_pos": 1708 }, { "start_pos": 1758, "end_pos": 1760 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 539, "end_pos": 541 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MY14-1", "uniprot_ac": "A0A8C2MY14", "uniprot_id": "A0A8C2MY14_CRIGR", "mass": { "chemical_mass": 22332.0, "monoisotopic_mass": 22332.0 }, "refseq": { "ac": "XP_003501778", "name": "peroxisomal membrane protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501778" }, "gene_names": [ { "name": "Pxmp2", "type": "recommended", "evidence": [ { "id": "A0A8C2MY14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14" } ] }, { "name": "Pxmp2", "type": "synonym", "evidence": [ { "id": "XP_003501778", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501778" } ] } ], "protein_names": [ { "name": "Peroxisomal membrane protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MY14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14/entry#names_and_taxonomy" } ] }, { "name": "peroxisomal membrane protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003501778", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501778" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 234 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613859.1) and transcript sequence (IACG01047098.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003501778", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501778" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MY14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pxmp2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14", "locus": {} } ], "crossref": [ { "id": "100774960", "url": "https://www.ncbi.nlm.nih.gov/gene/100774960", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774960", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QHSVFAY", "url": "https://omabrowser.org/oma/group/QHSVFAY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MY14", "url": "https://www.orthodb.org/?gene=A0A8C2MY14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FXV7", "url": "https://www.orthodb.org/?gene=A0A9J7FXV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266:SF80", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266:SF80", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04117", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04117", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003501778", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003501778", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MY14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MY14-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPAASRLRAECELPSLPRRALAQYLLLLKLYPVFTKAVSSGILSAVGNLLAQMIEKKQKNDSQSLDVSGLLRYLIYGFFVTGPLSHYFYLFMEYWIPPGVPLATVKRLLLDRLLFAPTFLLLFFLIMNLLEGKDVSAFASKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLASLRK", "length": 194, "header": "tr|A0A8C2MY14-1|A0A8C2MY14_CRIGR Isoform 1 of Peroxisomal membrane protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pxmp2 PE=3 SV=1 CANONICAL=A0A8C2MY14-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MY14-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14/entry", "sequence": { "sequence": "MAPAASRLRAECELPSLPRRALAQYLLLLKLYPVFTKAVSSGILSAVGNLLAQMIEKKQKNDSQSLDVSGLLRYLIYGFFVTGPLSHYFYLFMEYWIPPGVPLATVKRLLLDRLLFAPTFLLLFFLIMNLLEGKDVSAFASKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLASLRK", "length": 194, "header": "tr|A0A8C2MY14-1|A0A8C2MY14_CRIGR Isoform 1 of Peroxisomal membrane protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pxmp2 PE=3 SV=1 CANONICAL=A0A8C2MY14-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXV7/entry", "sequence": { "sequence": "MAPAASRLRAECELPSLPRRALAQYLLLLKLYPVFTKAVSSGILSAVGNLLAQMIEKKQKNDSQSLDVSGLLRFFVTGPLSHYFYLFMEYWIPPGVPLATVKRLLLDRLLFAPTFLLLFFLIMNLLEGKDVSAFASKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLASLRK", "length": 189, "header": "tr|A0A9J7FXV7-1|A0A9J7FXV7_CRIGR Computationally mapped isoform of Peroxisomal membrane protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pxmp2 PE=3 SV=1 CANONICAL=A0A8C2MY14-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MY14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MY14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774960", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0S0WGR0-1", "protein_name": "Peroxisomal membrane protein PMP22", "gene_name": "anon-WO0118547.268", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTSTQSDQISQFLECHGTTPVPNSGTSEILKFVPSAKVVGSALSCESATKTFGVSQAHLCTTGNMVLSKPLYSLFGTYLEQLFNHPVRTKSITACVLATSANVTSQRLAGAKTLNQQSVFAYGLFGLIFGGSVPHYFYTTVERLFSQDVRFRRFFLFLSERLVYAPIYQALSLFFLALFEGKSPSTALKNVEKLYWPLLKANWQYLSVFVYLNFAYVPPMFRSISMAIISFIWVVYIAQKRRRFQDKLAAKEAAK", "length": 255 }, "evidence": [ { "id": "A0A8C2MY14", "url": "https://omabrowser.org/oma/group/A0A8C2MY14/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A287AV17-1", "protein_name": "Peroxisomal membrane protein 2", "gene_name": "PXMP2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAPAASKLRTEAGLGALPRRALAQYLRLLRLYPVLTKAATSGILSALGNFLAQMIEKKQKKESCSQKLDVNGPLRYAIYGFFFTGPLSHFFYLFLEHWIPPEAPWASVQRLLLDRLLFAPAFLLLFFLIMNFLEGKDFAAFVAKMKRGFWPALQMNWRVWTPVQFINVNYVPLQFRVLFANVVALFWYAYLASLGK", "length": 196 }, "evidence": [ { "id": "A0A8C2MY14", "url": "https://omabrowser.org/oma/group/A0A8C2MY14/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q07066-1", "protein_name": "Peroxisomal membrane protein 2", "gene_name": "Pxmp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPAASRLRVESELRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLLEGKNISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLASLGK", "length": 194 }, "evidence": [ { "id": "A0A8C2MY14", "url": "https://omabrowser.org/oma/group/A0A8C2MY14/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54GD8-1", "protein_name": "PXMP2/4 family protein 3", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNSKPLSLTDAVTTWYMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLISSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLAILDGKPKSILFKLYFDLFPTLKASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKKRN", "length": 184 }, "evidence": [ { "id": "A0A8C2MY14", "url": "https://omabrowser.org/oma/group/A0A8C2MY14/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9NR77-1", "protein_name": "Peroxisomal membrane protein 2", "gene_name": "PXMP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPAASRLRAEAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYLASLGK", "length": 195 }, "evidence": [ { "id": "A0A8C2MY14", "url": "https://omabrowser.org/oma/group/A0A8C2MY14/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MY14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MY14", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MY18-1", "uniprot_ac": "A0A8C2MY18", "uniprot_id": "A0A8C2MY18_CRIGR", "mass": { "chemical_mass": 28200.0, "monoisotopic_mass": 28200.0 }, "refseq": { "ac": "XP_007642814", "name": "protein NipSnap homolog 3B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642814" }, "gene_names": [ { "name": "LOC100760938", "type": "recommended", "evidence": [ { "id": "A0A8C2MY18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY18" } ] }, { "name": "LOC100760938", "type": "synonym", "evidence": [ { "id": "XP_007642814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642814" } ] } ], "protein_names": [ { "name": "Protein NipSnap homolog 3B isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MY18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY18/entry#names_and_taxonomy" } ] }, { "name": "protein NipSnap homolog 3B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007642814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642814" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 212 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613603.1) and transcript sequence (IACG01087416.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642814", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642814" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MY18", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY18" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760938", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY18", "locus": {} } ], "crossref": [ { "id": "100760938", "url": "https://www.ncbi.nlm.nih.gov/gene/100760938", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051557", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051557", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760938", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760938", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MY18", "url": "https://www.orthodb.org/?gene=A0A8C2MY18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21017:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21017:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07978", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07978", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642814", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642814", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MY18", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MY18-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAFGSCLRKALVPRVLAPQVCSPFATGPRQSDGTFYEFRTYFLKPSKTNEFLENFKKNVNLRTAHSELVGYWSVEFGGRTNKVFHIWKYDNFAHRTAVRKALANDKAWQEEFLIPNLAFIDKQEVEITYLVPWCKIGKPPKEGVYELATFQMKPGGPALWGNAFKRAVNAHVDLGYSTLVGVFHTEYGALNRVHVLWWNESADSRAAGRHWSHEDPRVVAAVRESVNYLESQQNMFLIPASFSPLK", "length": 247, "header": "tr|A0A8C2MY18-1|A0A8C2MY18_CRIGR Isoform 1 of Protein NipSnap homolog 3B isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760938 PE=3 SV=1 CANONICAL=A0A8C2MY18-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MY18-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MY18/entry", "sequence": { "sequence": "MLAFGSCLRKALVPRVLAPQVCSPFATGPRQSDGTFYEFRTYFLKPSKTNEFLENFKKNVNLRTAHSELVGYWSVEFGGRTNKVFHIWKYDNFAHRTAVRKALANDKAWQEEFLIPNLAFIDKQEVEITYLVPWCKIGKPPKEGVYELATFQMKPGGPALWGNAFKRAVNAHVDLGYSTLVGVFHTEYGALNRVHVLWWNESADSRAAGRHWSHEDPRVVAAVRESVNYLESQQNMFLIPASFSPLK", "length": 247, "header": "tr|A0A8C2MY18-1|A0A8C2MY18_CRIGR Isoform 1 of Protein NipSnap homolog 3B isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760938 PE=3 SV=1 CANONICAL=A0A8C2MY18-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYA9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYA9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750386", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750386", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYA9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYA9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MYA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYA9" }, { "id": "PF05205", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05205" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BOD1/SHG1", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 204, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MYC6-1", "uniprot_ac": "A0A8C2MYC6", "uniprot_id": "A0A8C2MYC6_CRIGR", "mass": { "chemical_mass": 81736.0, "monoisotopic_mass": 81736.0 }, "refseq": { "ac": "XP_007646134", "name": "AN1-type zinc finger protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646134" }, "gene_names": [ { "name": "Zfand4", "type": "recommended", "evidence": [ { "id": "A0A8C2MYC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6" } ] }, { "name": "Zfand4", "type": "synonym", "evidence": [ { "id": "XP_007646134", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646134" } ] } ], "protein_names": [ { "name": "AN1-type zinc finger protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007646134", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646134" }, { "id": "A0A8C2MYC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614360.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646134", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646134" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zfand4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6", "locus": {} } ], "crossref": [ { "id": "cd01802", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01802", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768161", "url": "https://www.ncbi.nlm.nih.gov/gene/100768161", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768161", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768161", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MYC6", "url": "https://www.orthodb.org/?gene=A0A8C2MYC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GFA1", "url": "https://www.orthodb.org/?gene=A0A9J7GFA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KCL5", "url": "https://www.orthodb.org/?gene=A0A9J7KCL5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46728", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46728", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46728:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46728:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01428", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01428", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007646134", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646134", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MYC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MYC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6P7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCL5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFKADLGRTGIQLYTTYSRGIEKVKVMDNRKEPPFFNEDNVGPFYFKLPFYDTMELFIETLTGTCFELRVSPFEAVISVKGKIQRLEGIPICQQHLIWNNMELEDDYCLNDYNISEGCTLKLVLAMRGGPISTRKVPVEDPLRELAEYMDSSRDEVWEKTSCNKQVTFLVYREGDQLNFFRVVDRGDGTLTPLSESLSGGSVYNLYTDEDEEAEPSPSGQQIIENSITMNKMKLLKAKMENMNLSKKPKKVVKVKPRPPVAPRPPSSSTAAARHRLLRVLPHIGQSCLPSPGNAYLPETSRNAGTSSSAAQGPVDRPVSSLRNELLKEDDKWEMNALSHPPGSIRLLPQMAHIELENDKELADSVLHLGSSLPRRTKLLSGNLPSSNEDDVVLFPPSEECVSEELLLPEVGPFAPFAEGNGVEQSSGVEGIGKVTPEFPLTKGDRGLRAAEQPLNHVARVLSSDPIDNAILNHRESSSHKNRLLSPLLCAAPVSLHNSLVKPQRQSKCFESGNPSASTSQNALRELDIRTIADSSFSRTARFRGVKVDSPGKRSDIISKVEARDITEMANKASKEPVGCVNNNGFLASLARSASRDSLQNTRGAGRLRPSGIGLSTNFQHFQDENIRKSSPQSEPTEFFLSARGIGVSGNNAAAGKRVGESTRHLPPVKAPLQAKKKITKHCFLCGKKTGLASSFECRCGNNFCASHRYAETHGCTYDYKGAGRRYLQEANPVVNAPKLPKI", "length": 742, "header": "tr|A0A8C2MYC6-1|A0A8C2MYC6_CRIGR Isoform 1 of AN1-type zinc finger protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfand4 PE=4 SV=1 CANONICAL=A0A8C2MYC6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MYC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6/entry", "sequence": { "sequence": "MFKADLGRTGIQLYTTYSRGIEKVKVMDNRKEPPFFNEDNVGPFYFKLPFYDTMELFIETLTGTCFELRVSPFEAVISVKGKIQRLEGIPICQQHLIWNNMELEDDYCLNDYNISEGCTLKLVLAMRGGPISTRKVPVEDPLRELAEYMDSSRDEVWEKTSCNKQVTFLVYREGDQLNFFRVVDRGDGTLTPLSESLSGGSVYNLYTDEDEEAEPSPSGQQIIENSITMNKMKLLKAKMENMNLSKKPKKVVKVKPRPPVAPRPPSSSTAAARHRLLRVLPHIGQSCLPSPGNAYLPETSRNAGTSSSAAQGPVDRPVSSLRNELLKEDDKWEMNALSHPPGSIRLLPQMAHIELENDKELADSVLHLGSSLPRRTKLLSGNLPSSNEDDVVLFPPSEECVSEELLLPEVGPFAPFAEGNGVEQSSGVEGIGKVTPEFPLTKGDRGLRAAEQPLNHVARVLSSDPIDNAILNHRESSSHKNRLLSPLLCAAPVSLHNSLVKPQRQSKCFESGNPSASTSQNALRELDIRTIADSSFSRTARFRGVKVDSPGKRSDIISKVEARDITEMANKASKEPVGCVNNNGFLASLARSASRDSLQNTRGAGRLRPSGIGLSTNFQHFQDENIRKSSPQSEPTEFFLSARGIGVSGNNAAAGKRVGESTRHLPPVKAPLQAKKKITKHCFLCGKKTGLASSFECRCGNNFCASHRYAETHGCTYDYKGAGRRYLQEANPVVNAPKLPKI", "length": 742, "header": "tr|A0A8C2MYC6-1|A0A8C2MYC6_CRIGR Isoform 1 of AN1-type zinc finger protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfand4 PE=4 SV=1 CANONICAL=A0A8C2MYC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFA1/entry", "sequence": { "sequence": "MFKADLGRTGIQLYTTYSRGIEKVKVMDNRKEPPFFNEDNVGPFYFKLPFYDTMELFIETLTGTCFELRVSPFEAVISVKGKIQRLEGIPICQQHLIWNNMELEDDYCLNDYNISEGCTLKLVLAMRGGPISTRKVPVEDPLRELAEYMDSSRDEVWEKTSCNKQVTFLVYREGDQLNFFRVVDRGDGTLTPLSESLSGGSVYNLYTDEDEEAEPSPSGQQIIENSITMNKMKLLKAKMENMNLSKKPKKVVKVKPRPPVAPRPPSSSTAAARHRLLRVLPHIGQSCLPSPGNAYLPETSRNAGTSSSAAQGPVDRPVSSLRNELLKEDDKWEMNALSHPPGSIRLLPQMAHIELENDKELADSVLHLGSSLPRRTKLLSGNLPSSNEDDVVLFPPSEECVSEELLLPEVGPFAPFAEGNGVEQSSGVEGIGKVTPEFPLTKGDRGLRAAEQPLNHVARVLSSDPIDNAILNHRESSSHKNRLLSPLLCAAPVSLHNSLVKPQRQSKCFESGNPSASTSQNALRELDIRTIADSSFSRTARFRGVKVDSPGKRSDIISKVEARDITEMANKASKEPVGCVNNNGFLASLARSASRDSLQNTRGAGRLRPSGIGLSTNFQHFQDENIRKSSPQSEPTEFFLERWQEPSQWYVQGESTRHLPPVKAPLQAKKKITKHCFLCGKKTGLASSFECRCGNNFCASHRYAETHGCTYDYKGAGRRYLQEANPVVNAPKLPKI", "length": 736, "header": "tr|A0A9J7GFA1-1|A0A9J7GFA1_CRIGR Computationally mapped isoform of AN1-type zinc finger protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfand4 PE=4 SV=1 CANONICAL=A0A8C2MYC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P7/entry", "sequence": { "sequence": "MFKADLGRTGIQLYTTYSRGIEKVKVMDNRKEPPFFNEDNVGPFYFKLPFYDTMELFIETLTGTCFELRVSPFEAVISVKGKIQRLEGIPICQQHLIWNNMELEDDYCLNDYNISEGCTLKLVLAMRGGPISTRKVPVEDPLRELAEYMDSSRDEVWEKTSCNKQVTFLVYREGDQLNFFRVVDRGDGTLTPLSESLSGGSVYNLYTDEDEEAEPSPSGQQIIENSITMNKMKLLKAKMENMNLSKKPKKVVKVKPRPPVAPRPPSSSTAAARHRLLRVLPHIGQSCLPSPGNAYLPETSRNAGTSSSAAQGPVDRPVSSLRNELLKEDDKWEMNALSHPPGSIRLLPQMAHIELENDKELADSVLHLGSSLPRRTKLLSGNLPSSNEDDVVLFPPSEECVSEELLLPEVGPFAPFAEGNGVEQSSGVEGIGKVTPEFPLTKGDRGLRAAEQPLNHVARVLSSDPIDNAILNHRESSSHKNRLLSPLLCAAPVSLHNSLVKPQRQSKCFESGNPSASTSQNALRELDIRTIADSSFSRTARFRGVKVDSPGKRSDIISKVEARDITEMANKASKEPVGCVNNNGFLASLARSASRDSLQNTRGAGRLRPSGIGLSTNFQHFQDENIRKSSPQSEPTEFFLVFCVLIVVCSWYWSEWE", "length": 657, "header": "tr|A0A9J7H6P7-1|A0A9J7H6P7_CRIGR Computationally mapped isoform of AN1-type zinc finger protein 4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zfand4 PE=4 SV=1 CANONICAL=A0A8C2MYC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCL5/entry", "sequence": { "sequence": "MNKMKLLKAKMENMNLSKKPKKVVKVKPRPPVAPRPPSSSTAAARHRLLRVLPHIGQSCLPSPGNAYLPETSRNAGTSSSAAQGPVDRPVSSLRNELLKEDDKWEMNALSHPPGSIRLLPQMAHIELENDKELADSVLHLGSSLPRRTKLLSGNLPSSNEDDVVLFPPSEECVSEELLLPEVGPFAPFAEGNGVEQSSGVEGIGKVTPEFPLTKGDRGLRAAEQPLNHVARVLSSDPIDNAILNHRESSSHKNRLLSPLLCAAPVSLHNSLVKPQRQSKCFESGNPSASTSQNALRELDIRTIADSSFSRTARFRGVKVDSPGKRSDIISKVEARDITEMANKASKEPVGCVNNNGFLASLARSASRDSLQNTRGAGRLRPSGIGLSTNFQHFQDENIRKSSPQSEPTEFFLSARGIGVSGNNAAAGKRVGESTRHLPPVKAPLQAKKKITKHCFLCGKKTGLASSFECRCGNNFCASHRYAETHGCTYDYKGAGRRYLQEANPVVNAPKLPKI", "length": 514, "header": "tr|A0A9J7KCL5-1|A0A9J7KCL5_CRIGR Computationally mapped isoform of AN1-type zinc finger protein 4 isoform X5 OS=Cricetulus griseus OX=10029 GN=Zfand4 PE=4 SV=1 CANONICAL=A0A8C2MYC6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768161", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768161", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MYC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6" }, { "id": "PS51039", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51039" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AN1-type", "eco_id": "ECO_0000259", "start_pos": 676, "end_pos": 723, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MYC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC6" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 129, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 243, "end_pos": 245 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MYG4-1", "uniprot_ac": "A0A8C2MYG4", "uniprot_id": "A0A8C2MYG4_CRIGR", "mass": { "chemical_mass": 39899.0, "monoisotopic_mass": 39899.0 }, "refseq": { "ac": "XP_003514328", "name": "calcium-binding protein 39", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514328" }, "gene_names": [ { "name": "Cab39", "type": "recommended", "evidence": [ { "id": "A0A8C2MYG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4" } ] }, { "name": "Cab39", "type": "synonym", "evidence": [ { "id": "XP_003514328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514328" } ] } ], "protein_names": [ { "name": "Calcium-binding protein 39", "type": "synonym", "evidence": [ { "id": "A0A8C2MYG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4/entry#names_and_taxonomy" } ] }, { "name": "calcium-binding protein 39", "type": "synonym", "evidence": [ { "id": "XP_003514328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514328" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616489.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514328", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514328" } ] }, { "annotation": "Component of a complex that binds and activates STK11/LKB1. In the complex, required to stabilize the interaction between CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta) and STK11/LKB1.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4#function" }, { "database": "UniProtKB", "id": "ARBA00025206", "url": "https://www.uniprot.org/uniprotkb/ARBA00025206#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cab39", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4", "locus": {} } ], "crossref": [ { "id": "100772119", "url": "https://www.ncbi.nlm.nih.gov/gene/100772119", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772119", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772119", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AYDHKES", "url": "https://omabrowser.org/oma/group/AYDHKES/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MYG4", "url": "https://www.orthodb.org/?gene=A0A8C2MYG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514328", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514328", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MYG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MYG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341, "header": "tr|A0A8C2MYG4-1|A0A8C2MYG4_CRIGR Isoform 1 of Calcium-binding protein 39 OS=Cricetulus griseus OX=10029 GN=Cab39 PE=3 SV=1 CANONICAL=A0A8C2MYG4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MYG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4/entry", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341, "header": "tr|A0A8C2MYG4-1|A0A8C2MYG4_CRIGR Isoform 1 of Calcium-binding protein 39 OS=Cricetulus griseus OX=10029 GN=Cab39 PE=3 SV=1 CANONICAL=A0A8C2MYG4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772119", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772119", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "C7G028-1", "protein_name": "Mo25-like family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNIFFNKKQKTPSELVKSIKESLASMDKSGPNSKSTEKASEEISKCLQEIKKILHGDSEHEPNQEVVAVLSNEICTSDLVQILIKDLNKLEFEAKKDVAQIFNILLRHKNGARSPIVEYIAKNPEILDSLVKGYEQQDIALNCGTMLRECIKHESLAKILIYSPNFWEFFEFVEVSNFDVASDTFATFKEILTKHKTLSAEFLEKNYDQVFEKYTTLLNSQNYVTRRQSIKVNNNSNNNNNNNNNNNNNNNNNNNNNAAILLGELLLDRSNFNIMPLYISSAANLKFMMNLLRDKSKSIQYEAFHVFKVFVANPNKTKPILEILTKNKEKLIAFLSQFHNDKEEDQFSDEKNFLVKQIQAIQG", "length": 363 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "D3ZJ77-1", "protein_name": "Calcium binding protein 39", "gene_name": "Cab39", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRAAQQEA", "length": 341 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1SMX5-1", "protein_name": "Calcium binding protein 39", "gene_name": "CAB39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPFPFGKSHKSPADIVRNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P32464-1", "protein_name": "Protein HYM1", "gene_name": "HYM1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFKKYKNQDLDMAFWWKKNPKTPSDYARLIIEQLNKFSSPSLTQDNKRKVQEECTKYLIGTKHFIVGDTDPHPTPEAIDELYTAMHRADVFYELLLHFVDLEFEARRECMLIFSICLGYSKDNKFVTVDYLVSQPKTISLMLRTAEVALQQKGCQDIFLTVGNMIIECIKYEQLCRIILKDPQLWKFFEFAKLGNFEISTESLQILSAAFTAHPKLVSKEFFSNEINIIRFIKCINKLMAHGSYVTKRQSTKLLASLIVIRSNNALMNIYINSPENLKLIMTLMTDKSKNLQLEAFNVFKVMVANPRKSKPVFDILVKNRDKLLTYFKTFGLDSQDSTFLDEREFIVQEIDSLPRIISSTTEVSNNNASSSNVASITSPSSVMNNQSSILTHSTSPDSR", "length": 399 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P91891-1", "protein_name": "Protein Mo25", "gene_name": "Mo25", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPLFGKSQKSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNMLYGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAEFLDANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISEPENLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQTKLVDFLTNFHTDRSEDEQFNDEKAYLIKQIKELKPLPEA", "length": 339 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q06138-1", "protein_name": "Calcium-binding protein 39", "gene_name": "Cab39", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLGTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRAAQQEA", "length": 341 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q29RI6-1", "protein_name": "Calcium-binding protein 39", "gene_name": "CAB39", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9Y376-1", "protein_name": "Calcium-binding protein 39", "gene_name": "CAB39", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GI86-1", "protein_name": "Calcium binding protein 39", "gene_name": "CAB39", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "A0A8C2MYG4", "url": "https://omabrowser.org/oma/group/A0A8C2MYG4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 }, { "start_pos": 286, "end_pos": 288 }, { "start_pos": 298, "end_pos": 300 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MYJ7-1", "uniprot_ac": "A0A8C2MYJ7", "uniprot_id": "A0A8C2MYJ7_CRIGR", "mass": { "chemical_mass": 42480.0, "monoisotopic_mass": 42480.0 }, "refseq": { "ac": "XP_027251957", "name": "proline-rich protein 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251957" }, "gene_names": [ { "name": "Prr5", "type": "recommended", "evidence": [ { "id": "A0A8C2MYJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYJ7" } ] }, { "name": "Prr5", "type": "synonym", "evidence": [ { "id": "XP_027251957", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251957" } ] } ], "protein_names": [ { "name": "Proline-rich protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MYJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYJ7/entry#names_and_taxonomy" } ] }, { "name": "proline-rich protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027251957", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251957" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251957", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251957" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYJ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prr5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYJ7", "locus": {} } ], "crossref": [ { "id": "100752193", "url": "https://www.ncbi.nlm.nih.gov/gene/100752193", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013745", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013745", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752193", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752193", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MYJ7", "url": "https://www.orthodb.org/?gene=A0A8C2MYJ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K5P2", "url": "https://www.orthodb.org/?gene=A0A9J7K5P2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32428", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32428", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32428:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32428:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08539", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08539", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251957", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251957", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MYJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MYJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDC0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5P2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5P2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTLRRLKFMSSPSLSDLGKREPGAAGADERGTQQRRACANATWNSIHNGVIAVFQRKGLPDQELFILNEGVRQLLKTELGSFFTEYLQNQLLTKGMVILRDKIRFYEGQKLLDSLAETWDFFFSDVLPTLQAIFYPVQGKEPSVRQLALLHFRNTITLSVKLEDALARSHARVPPAIAQMLLVLQGVHESRGVTEDYLRLETLIQKVVSPYLGTYGLYSSEGSCTHSCILEKRLLRRSRSGDVLAKNPVVRSKSYNTPLLNPVAEHEAEGTAAGGTSIRRHSVSEMTSCPEPQGFVDTPGQGPSGTFRSSPTPHSGPCPSRLYPPAHSPEQGPAHSSPPTSSPETLVDQILESVDSDSEGIFIDFGRGSRSSVSDFDATGSRPSVV", "length": 387, "header": "tr|A0A8C2MYJ7-1|A0A8C2MYJ7_CRIGR Isoform 1 of Proline-rich protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prr5 PE=3 SV=1 CANONICAL=A0A8C2MYJ7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MYJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYJ7/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003613609.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496057" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYW0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYW0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Stmnd1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYW0", "locus": {} } ], "crossref": [ { "id": "100765884", "url": "https://www.ncbi.nlm.nih.gov/gene/100765884", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036002", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036002", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765884", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765884", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "APKKGWE", "url": "https://omabrowser.org/oma/group/APKKGWE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MYW0", "url": "https://www.orthodb.org/?gene=A0A8C2MYW0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10104", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10104", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10104:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10104:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00836", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00836", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496057", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MYW0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MYW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCGPSQQAGDQSQSHHVPSPRKGWEEGSKADVRVTSSKENCSPQTEAAWVKDIVDDAESLYQQAQMGNLPGTIPESYPPPSKTNGRVNSDPVANGIINKPQLLESWERPKSSDILEELIVQGIIQSRSKVFRNGESYDVMVDATEKPLRKPPARLKKLKVKTEVKDFTIQDIEEKMQAAEERRKTKKEEIRKRLRSDRLLTTKPSDAAEPGRVEAPFAKGLPDVSSPALLRSYMQEGEPLKRKKSESNVARMNKNNPCTGLGVVESDMYYNREDDIF", "length": 278, "header": "tr|A0A8C2MYW0-1|A0A8C2MYW0_CRIGR Isoform 1 of Stathmin domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Stmnd1 PE=4 SV=1 CANONICAL=A0A8C2MYW0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MYW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYW0/entry", "sequence": { "sequence": "MGCGPSQQAGDQSQSHHVPSPRKGWEEGSKADVRVTSSKENCSPQTEAAWVKDIVDDAESLYQQAQMGNLPGTIPESYPPPSKTNGRVNSDPVANGIINKPQLLESWERPKSSDILEELIVQGIIQSRSKVFRNGESYDVMVDATEKPLRKPPARLKKLKVKTEVKDFTIQDIEEKMQAAEERRKTKKEEIRKRLRSDRLLTTKPSDAAEPGRVEAPFAKGLPDVSSPALLRSYMQEGEPLKRKKSESNVARMNKNNPCTGLGVVESDMYYNREDDIF", "length": 278, "header": "tr|A0A8C2MYW0-1|A0A8C2MYW0_CRIGR Isoform 1 of Stathmin domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Stmnd1 PE=4 SV=1 CANONICAL=A0A8C2MYW0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281046", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281046" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MYX0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYX0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C1qtnf2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYX0", "locus": {} } ], "crossref": [ { "id": "100765047", "url": "https://www.ncbi.nlm.nih.gov/gene/100765047", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001073", "database": "InterPro", "categories": [ "Protein Classification" 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This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296293", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296293" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plekhg1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13243", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13243", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767054", "url": "https://www.ncbi.nlm.nih.gov/gene/100767054", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767054", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767054", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WHSTYSN", "url": "https://omabrowser.org/oma/group/WHSTYSN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MZG9", "url": "https://www.orthodb.org/?gene=A0A8C2MZG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45924", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45924", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45924:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45924:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035296293", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296293", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MZG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5C5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELSDSDRPISFGSTSSSASSRDSHGSFGSRMTLVSNSHLGLFHQDKEAGAIKLELVPAQPFSSSELQRDNPSGTQDMDGVRERQPGTPWRVDTNGTPQTTADSDSSPKLLYVDRVVQEILETERTYVQDLKSIVEDYLACIRDQAKLPLGTEDRAALFGNIQDIYHFNSELLQDLENCENDPVAIAECFVSKSEEFHIYTQYCTNYPRSVAVLTECMRNKILAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAIRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLLDKVLLITKKRDDTFTYKSHILCGNLMLVEVIPKDPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHAAKIPAKAKQAILEMDAIHHPGFCYSPEGQTKAPFGASKEGAAPYRMRRKSEPSSRSHKVMKTSETAHDIQKVSREEGSSPLTSATPSPAQRNSQPTSTAIISMLRGGGAVRSLWTDHHLRQSLFPSRRSPQENEDDDDDYQMFVPSFSSSDLNSTRLCEENTSSRPCSWHLGLIEPAEISSSGHRIVRRASSAGESNTCPPEVRIRDSDGSQYCPRREMQNGPQPEGQGAMTPFGSSVELTIDDIDHVYDNISFEDLKLMVAKRDEAESSFSKSPRDSVRPKSTPELAFSKRQASHSTSSLYPKKEAAPSGQEASSQSIHELQVVEENIYDTIGLPDPPSLDFKCSTLKQPKKNSFLGLEADFACCDSLRPFVSQDSLQFSEDDVSYPQGPSDTDYLSLLYDSPRCNLPIADKTLSDKLSEEVDEIWNDLENYIKKNEDKARDRLLAAFPVSKDDVPERLCVESSRELSRDTGHATSMLSLPGNQAFLTPGKSRVARASRANCSLGDDLISTEGSFMSLNQLSLASEVPPMDSPYDLANYSLPQADPENPDLGLEATDKTKSRVFMMARQYSQKIKKANQILKVRSPELEQPPSSQHKPIPKDLAAILEEKRQGGPAIGARIAEYSQLYDQIVFRETPIKVQKDGWARTQEPSLHRPMSPSQPHRGGEDWLWHSPYSNGELADFCPQSEQDSKAKYPTLEIITKSIPRQLSAACSVPSLQVSDPLLGPVQRCSVVVSQPHKENCQGHLYNSLGRKAQPSSRPQSSSSILINKSLDSINYPSETENKHLLSLHKSPRGVSQQDLLTGVVDSCQQDTGKRSDLTLQDSQKVLVVNRNLPLSAQVATQNYFSNFKETEGDEDDYVEIKSEEEEVDLGLSLSQGRKSDPKTPAPDCSGNLCRHSAPCSLKEPVSSRLGLPPYLTPCKDSDKLNDYLWRGPSPSQQNIVQSLREKFQCLSSSSFA", "length": 1379, "header": "tr|A0A8C2MZG9-1|A0A8C2MZG9_CRIGR Isoform 1 of Pleckstrin homology domain-containing family G member 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Plekhg1 PE=4 SV=1 CANONICAL=A0A8C2MZG9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MZG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9/entry", "sequence": { "sequence": "MELSDSDRPISFGSTSSSASSRDSHGSFGSRMTLVSNSHLGLFHQDKEAGAIKLELVPAQPFSSSELQRDNPSGTQDMDGVRERQPGTPWRVDTNGTPQTTADSDSSPKLLYVDRVVQEILETERTYVQDLKSIVEDYLACIRDQAKLPLGTEDRAALFGNIQDIYHFNSELLQDLENCENDPVAIAECFVSKSEEFHIYTQYCTNYPRSVAVLTECMRNKILAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAIRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLLDKVLLITKKRDDTFTYKSHILCGNLMLVEVIPKDPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHAAKIPAKAKQAILEMDAIHHPGFCYSPEGQTKAPFGASKEGAAPYRMRRKSEPSSRSHKVMKTSETAHDIQKVSREEGSSPLTSATPSPAQRNSQPTSTAIISMLRGGGAVRSLWTDHHLRQSLFPSRRSPQENEDDDDDYQMFVPSFSSSDLNSTRLCEENTSSRPCSWHLGLIEPAEISSSGHRIVRRASSAGESNTCPPEVRIRDSDGSQYCPRREMQNGPQPEGQGAMTPFGSSVELTIDDIDHVYDNISFEDLKLMVAKRDEAESSFSKSPRDSVRPKSTPELAFSKRQASHSTSSLYPKKEAAPSGQEASSQSIHELQVVEENIYDTIGLPDPPSLDFKCSTLKQPKKNSFLGLEADFACCDSLRPFVSQDSLQFSEDDVSYPQGPSDTDYLSLLYDSPRCNLPIADKTLSDKLSEEVDEIWNDLENYIKKNEDKARDRLLAAFPVSKDDVPERLCVESSRELSRDTGHATSMLSLPGNQAFLTPGKSRVARASRANCSLGDDLISTEGSFMSLNQLSLASEVPPMDSPYDLANYSLPQADPENPDLGLEATDKTKSRVFMMARQYSQKIKKANQILKVRSPELEQPPSSQHKPIPKDLAAILEEKRQGGPAIGARIAEYSQLYDQIVFRETPIKVQKDGWARTQEPSLHRPMSPSQPHRGGEDWLWHSPYSNGELADFCPQSEQDSKAKYPTLEIITKSIPRQLSAACSVPSLQVSDPLLGPVQRCSVVVSQPHKENCQGHLYNSLGRKAQPSSRPQSSSSILINKSLDSINYPSETENKHLLSLHKSPRGVSQQDLLTGVVDSCQQDTGKRSDLTLQDSQKVLVVNRNLPLSAQVATQNYFSNFKETEGDEDDYVEIKSEEEEVDLGLSLSQGRKSDPKTPAPDCSGNLCRHSAPCSLKEPVSSRLGLPPYLTPCKDSDKLNDYLWRGPSPSQQNIVQSLREKFQCLSSSSFA", "length": 1379, "header": "tr|A0A8C2MZG9-1|A0A8C2MZG9_CRIGR Isoform 1 of Pleckstrin homology domain-containing family G member 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Plekhg1 PE=4 SV=1 CANONICAL=A0A8C2MZG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GSY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSY9/entry", "sequence": { "sequence": "MELSDSDRPISFGSTSSSASSRDSHGSFGSRMTLVSNSHLGLFHQDKEAGAIKLELVPAQPFSSSELQRDNPSGTQDMDGVRERQPGTPWRVDTNGTPQTTADSDSSPKLLYVDRVVQEILETERTYVQDLKSIVEDYLACIRDQAKLPLGTEDRAALFGNIQDIYHFNRSVAVLTECMRNKILAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAIRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLLDKVLLITKKRDDTFTYKSHILCGNLMLVEVIPKDPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHAAKIPAKAKQAILEMDAIHHPGFCYSPEGQTKAPFGASKEGAAPYRMRRKSEPSSRSHKVMKTSETAHDIQKVSREEGSSPLTSATPSPAQRNSQPTSTAIISMLRGGGAVRSLWTDHHLRQSLFPSRRSPQENEDDDDDYQMFVPSFSSSDLNSTRLCEENTSSRPCSWHLGLIEPAEISSSGHRIVRRASSAGESNTCPPEVRIRDSDGSQYCPRREMQNGPQPEGQGAMTPFGSSVELTIDDIDHVYDNISFEDLKLMVAKRDEAESSFSKSPRDSVRPKSTPELAFSKRQASHSTSSLYPKKEAAPSGQEASSQSIHELQVVEENIYDTIGLPDPPSLDFKCSTLKQPKKNSFLGLEADFACCDSLRPFVSQDSLQFSEDDVSYPQGPSDTDYLSLLYDSPRCNLPIADKTLSDKLSEEVDEIWNDLENYIKKNEDKARDRLLAAFPVSKDDVPERLCVESSRELSRDTGHATSMLSLPGNQAFLTPGKSRVARASRANCSLGDDLISTEGSFMSLNQLSLASEVPPMDSPYDLANYSLPQADPENPDLGLEATDKTKSRVFMMARQYSQKIKKANQILKVRSPELEQPPSSQHKPIPKDLAAILEEKRQGGPAIGARIAEYSQLYDQIVFRETPIKVQKDGWARTQEPSLHRPMSPSQPHRGGEDWLWHSPYSNGELADFCPQSEQDSKAKYPTLEIITKSIPRQLSAACSVPSLQVSDPLLGPVQRCSVVVSQPHKENCQGHLYNSLGRKAQPSSRPQSSSSILINKSLDSINYPSETENKHLLSLHKSPRGVSQQDLLTGVVDSCQQDTGKRSDLTLQDSQKVLVVNRNLPLSAQVATQNYFSNFKETEGDEDDYVEIKSEEEEVDLGLSLSQGRKSDPKTPAPDCSGNLCRHSAPCSLKEPVSSRLGLPPYLTPCKDSDKLNDYLWRGPSPSQQNIVQSLREKFQCLSSSSFA", "length": 1340, "header": "tr|A0A9J7GSY9-1|A0A9J7GSY9_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Plekhg1 PE=4 SV=1 CANONICAL=A0A8C2MZG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5C5/entry", "sequence": { "sequence": "MELSDSDRPISFGSTSSSASSRDSHGSFGSRMTLVSNSHLGLFHQDKEAGAIKLELVPAQPFSSSELQRDNPSGTQDMDGVRERQPGTPWRVDTNGTPQTTADSDSSPKLLYVDRVVQEILETERTYVQDLKSIVEDYLACIRDQAKLPLGTEDRAALFGNIQDIYHFNSELLQDLENCENDPVAIAECFVSKSEEFHIYTQYCTNYPRSVAVLTECMRNKILAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAIRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLLDKVLLITKKRDDTFTYKSHILCGNLMLVEVIPKDPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHAAKIPAKAKQAILEMDAIHHPGFCYSPEGQTKAPFGASKEGAAPYRMRRKSETAHDIQKVSREEGSSPLTSATPSPAQRNSQPTSTAIISMLRGGGAVRSLWTDHHLRQSLFPSRRSPQENEDDDDDYQMFVPSFSSSDLNSTRLCEENTSSRPCSWHLGLIEPAEISSSGHRIVRRASSAGESNTCPPEVRIRDSDGSQYCPRREMQNGPQPEGQGAMTPFGSSVELTIDDIDHVYDNISFEDLKLMVAKRDEAESSFSKSPRDSVRPKSTPELAFSKRQASHSTSSLYPKKEAAPSGQEASSQSIHELQVVEENIYDTIGLPDPPSLDFKCSTLKQPKKNSFLGLEADFACCDSLRPFVSQDSLQFSEDDVSYPQGPSDTDYLSLLYDSPRCNLPIADKTLSDKLSEEVDEIWNDLENYIKKNEDKARDRLLAAFPVSKDDVPERLCVESSRELSRDTGHATSMLSLPGNQAFLTPGKSRVARASRANCSLGDDLISTEGSFMSLNQLSLASEVPPMDSPYDLANYSLPQADPENPDLGLEATDKTKSRVFMMARQYSQKIKKANQILKVRSPELEQPPSSQHKPIPKDLAAILEEKRQGGPAIGARIAEYSQLYDQIVFRETPIKVQKDGWARTQEPSLHRPMSPSQPHRGGEDWLWHSPYSNGELADFCPQSEQDSKAKYPTLEIITKSIPRQLSAACSVPSLQVSDPLLGPVQRCSVVVSQPHKENCQGHLYNSLGRKAQPSSRPQSSSSILINKSLDSINYPSETENKHLLSLHKSPRGVSQQDLLTGVVDSCQQDTGKRSDLTLQDSQKVLVVNRNLPLSAQVATQNYFSNFKETEGDEDDYVEIKSEEEEVDLGLSLSQGRKSDPKTPAPDCSGNLCRHSAPCSLKEPVSSRLGLPPYLTPCKDSDKLNDYLWRGPSPSQQNIVQSLREKFQCLSSSSFA", "length": 1366, "header": "tr|A0A9J7K5C5-1|A0A9J7K5C5_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family G member 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekhg1 PE=4 SV=1 CANONICAL=A0A8C2MZG9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767054", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767054", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XPU3-1", "protein_name": "Pleckstrin homology and RhoGEF domain containing G1", "gene_name": "PLEKHG1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDLSDSDRPVSFSSTSSSASSRDSHCSFGSRMTLVSNSHLGLFNQEKEAGAIKLELVPARRFSSNKPRKNIPTEQEDPEESLEKKLSTPRKAEPKGAGKNCAMSLVTEPTSPKLLYVDRVVQEILETERMYVQDLKSIVKDYLDCITDQSKLPLGTEERSALFGNIRDIYLFNSELLQDLENCENDPVAIADCFVSKSEDFHIYTQYCTNYPRSVAVLTECMRNKTLAKFFRERQEALQHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAIRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLFDKLLLITKKRDEMFAYKAHILCGNLMLVEVIPKEPLSFSVFHYKNPKMQHTVQAKSQQEKRLWILHLKRLILENHPAKIPAKAKQAILEMDAIHHPGFHYSPEGETKSTYQPKEGATQQRVRRKSEPSSRVHKVLKSNDISPDMQKRICIEGALLSQANKLGSNESLLNSRKKGSLESSGLESQFQGSAEPAYNSDQDENLQTSAAEQIDADDEEESEQGMQQNSLQKSKGGRKRLNSQAAENVEKRRSVNLSKCEMQSSKDPSDEESSQLNTDLPFSCSARQSQSPRQFNTPQNNSLIMNILGGTTSVRNIWTDHQIRQALFPSRRPPYENEDDDDDYQMFMPSLSTSNSGSAVSGERRSHSDRPCSWHLGVVHQNETPSSNRHKIVRRASSAGESNTCPTIARCKISERSSRRDVKRTDVSSMNAYPESSEELTIDDIEHVYDNISYEDLKLMGLTRREETHHGPQRSARDSLYEEENKSSLNSPSKKRTANQSRTSLHASRDEILLGRDAATSSLDELRIVEDNVYDTIVLPETPLLKFKHDPLKCSKKRSFLGLEKDLTCSDNLQQFVSEESLQFSEDESPYHRLPIDNDYLSLVDSSSNSDSLSHKSAADKLSEEVDEIWNDLENYIKKNQEKTRDRHLAAFPVCKDDIQERLHAGSTPELSKDVEYSMSTLSLPETPIFPKTVKPRAATVSEASLRLEDATACKESSLASLNRSSFLGEMPFVDSPYESASSVLSNAHTECMENDPAIVDKTKNRVFMMARQYSQKIKKANQLLKVKTPEQEQPASRQQKLKHKDLAAILEEKKQGGPAIGARIAEYSQLYDQIVFRDSSPKVQKEAWASPQEPSAVRFSTPLASTLPCAQVTGECSRAEDWLLHSTYSNGELADFSPWPESQDTKSKSSYAEAVTKSNSRQLPSACSVPSLQISNRLHVPAQRWSAIISQPNKENLHQDHIYNSLGRRVSSMKPQAYSRSQSSSSIVVNRSGESIVYPNETDKKTPHSNRNFRLNSHQALGIASACTGPDMRKQIPENYSDMILQDSQKVLRVNRPSPLTAQMATQNYFSNFKDTEEGEGDDDDYVEIRSEDEGSDLEASQNQTRKLDPKLHNTDTDPSETLCSKTVSCTPAKPTGSKHTLTPYLTAYSDSDKLNDYLWRVPSPSQQNIVQSLREKFQCLSSSSFA", "length": 1530 }, "evidence": [ { "id": "A0A8C2MZG9", "url": "https://omabrowser.org/oma/group/A0A8C2MZG9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9SF51-1", "protein_name": "Pleckstrin homology and RhoGEF domain containing G1", "gene_name": "PLEKHG1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSTTMVGALVRGWRNRSSPRRAESKLIIPQSQDEIQTRVLLGAESDDKVSSPQDIEDLPGEVSDAHQLRREVRSAVTQARYLRTTARHSCSGDLGAMELSDSDRPVSFGSTSSSASSRDSHGSFGSRMTLVSSSHLGLFPQDKEAGAIKLELMPARPFSSSELQTDRAAGQQSTDEGGERQPRAQRRVEANGPTKTGAESATSPKLLYVDRVVQEILETERTYVQDLKSIVEDYLDCIRDQTKLPLGTDERSALFGNIQDIYHFNSELLQELENCENDPVAIAECFVSKSEEFHIYTQYCTNYPRSVAVLTECMRNKMLAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAVRLQEIQSLLTNWKGPDLTSYGELVLEGTFRLQRAKNERTLFLFDKLLLITKKRDDTFTYKAHILCGNLMLVEVIPKEPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHAAKIPAKAKQAILEMDAIHYPGFCYSPEGETCGSRNGSAPYRLRRKSEPSSRSHKVLKTSETAQDIQKVSREEGSPQLTSAGPSPAQRNSQPSSSTILSVLRGGGAVRNIWTDHQIRQALFPSRRSQENEEDEDDYQMFLPSFSSSDLNSAQLCEDGTSSRPCSWHMGQIESSETSSSGHRIVRRASSAGESNTCPPDIRTRDSGGSQYSSRRELQGDPKTEGQDGTTPYGSSIELTIDDIDHVYDNISYEDLKLMVAKREDAEVSPQKPVRDSVRPKSTPELAFSKKPAGPEEESTLHPRRDGALPAGEAWNQSMHDLQVMEENVYDTIALPEAPSRDFKGSSPKRSARSTFLGLEADLGCCDSLRASASQDSLQFSEDEAPYPPGSSDNDYLSLLYNSFGCNLALADRSISDKLSEEVDEIWNDLENYIKKNEVKARNRLLAAFPVSKDDVQERPLAGSTPELSARSPLSLAAGRALLAPPADRPGPAPCALDRDPASKDSSCLSLHRLSLASDLPPAESPYDVAGGSLSSADLENPEPGLDNVDKTRSRVFLMARQYSQKIKKANQLLKVKNPELEQTLSSQPQKPASKDLAAILEEKRQGGPAIGARIAEYSQLYDQIVFRETPFKTQKDGWASPQDPSNLSSASPSHAQQGSEDWLLHSTYSNGELADFCPWPEQDLKSKYPILEINARSTPKQLSAACSVPSLQTSDPLLGFVQRHSVVVSQPNKENSCQGHLYNSLGRKGISAKSQPYNRSQSSSSILINKSADSINYPSGVAKQQPVSLHRSSRWESHQDLLPSIADSGQQGPEKRSDLTLQDSQKVLVVNRNLPLSAQMATQNYFSNFKETEGDEDDYVEIKSEEDESELELSHSRRRKSDPKITDADFADNVCSHTTSYSLNSPCTPKKPVSGKLGISPYLTPYNDPDKLNDYLWKGPSPNQQNIVQSLREKFQCLSSSSFA", "length": 1477 }, "evidence": [ { "id": "A0A8C2MZG9", "url": "https://omabrowser.org/oma/group/A0A8C2MZG9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LJM1-1", "protein_name": "Pleckstrin homology and RhoGEF domain containing G1", "gene_name": "Plekhg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSTTMVGTLVRGWRNRSSPRRTELKPPTPQRQGGIRIQDGHRRLQLEVPSAVSRVPDPRTTTEPSQCPERKTMELSDSDRPISFGSTSSSASSRDSHGSFGSRMTLVSNSHLGLFHQDKEAGAIKLELVPAQPFSSSELQKDNPAGPPNMDGVGEKQPRAPWRVDTNGTPQTTADSATSPKLLYVDRVVQEILETERTYVQDLKSIVEDYLACIRDQTKLPLGTEDRAALFGNIQDIYHFNSELLQELENCENDPVAIAECFVSKSEEFHIYTQYCTNYPRSVAVLTECMRNKMLAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAVRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLLDKLLLITKKREDTFTYKAHILCGNLMLVEVIPKEPLSFSVFHYKSPKLQHTVQAKSQQEKRLWILHLKRLILENHAAKIPAKAKQAILEMDAIHHPGFCYDPKGEVKTPCGSAPHRLRRKSEPSSRSHKVLKTSETAQDIQKVSREESSSQLTSAVPAQRNRQPGNAAVLNMLRGGGSVRGLWMDHHIQQPFFPSRRTPQENEDDDDDYQMFVPSFSSSDLNSTRLCEENTSSRPCSWHLGLIEPTEISSSGHRIVRRASSAGESNACPPEVRLRDSDGSQYCPGREMQNSPQPGGQGGMTPFGSSVELTIDDIDHVYDNISFEDLKLMVAKRDETESSFSKSSRDSVRPKSTPELAFSKRQASHSTSSLHSKKETASSGQEASNQSIHEHQEVEENIYDTIGLPDPPSLNFQRSSLQQPKRSTFLGLEADFACCDSLRPFVSQDRLQFSEDDISYHQGPSDTDYLSLLYDSPRCNLPIADKTLSDKLSEEVDEIWNDLENYIKKNEDKSRDRLLAAFPVSKDDVPERLYVESTQELSRDAGRATSMLALPGSQTFLTPGESRVVRASRANCSLEDDLISTEGSFLSLNQLSLVSDEPSEDNPYDLASCSLPQTDPENPDPRMEITDKTKSRVFMMARQYSQKIKKVNQLLKVKSPELEQPLSSQHRPIHKDLVAILEEKRQGGPAIGARIAEYSQLYDQIVFRETPLKSQKDGWTSTQEPALHRPASPPQVQGAGEDWLWHSSYSNREVADFSPQTEQDSKSKYPVTLESITKIMPRQLSAACSVPSLQGSDPLLGSVQQRCSVVVSQPHKENSGQGHLYNSLGRKAISAKLQPYSRPQSSSSVLINKSLDSINYPSETEKKQLLSLQKSPRGASQQDLLSGLADSCQQDTGKQSDLTLQDSQKVLVVNRNLPLSAQIASQNYFSNFKETEGDEDDYVEIKSEEDEVRLDLSPRRNRKSDPKIPDPDCSDNICRHNTPYSLKEPVSGRLGLPPYLTACKDSDKLNDYLWRGPSPNQQNIVQSLREKFQCLSSSSFA", "length": 1453 }, "evidence": [ { "id": "A0A8C2MZG9", "url": "https://omabrowser.org/oma/group/A0A8C2MZG9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ULL1-1", "protein_name": "Pleckstrin homology domain-containing family G member 1", "gene_name": "PLEKHG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELSDSDRPVSFGSTSSSASSRDSHGSFGSRMTLVSNSHMGLFNQDKEVGAIKLELIPARPFSSSELQRDNPATGQQNADEGSERPPRAQWRVDSNGAPKTIADSATSPKLLYVDRVVQEILETERTYVQDLKSIVEDYLDCIRDQTKLPLGTEERSALFGNIQDIYHFNSELLQDLENCENDPVAIAECFVSKSEEFHIYTQYCTNYPRSVAVLTECMRNKILAKFFRERQETLKHSLPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLDAIDTMQRVAWHINDMKRKHEHAVRLQEIQSLLTNWKGPDLTSYGELVLEGTFRIQRAKNERTLFLFDKLLLITKKRDDTFTYKAHILCGNLMLVEVIPKEPLSFSVFHYKNPKLQHTVQAKSQQDKRLWVLHLKRLILENHAAKIPAKAKQAILEMDAIHHPGFCYSPEGGTKALFGSKEGSAPYRLRRKSEPSSRSHKVLKTSETAQDIQKVSREEGSPQLSSARPSPAQRNSQPSSSTMISVLRAGGALRNIWTDHQIRQALFPSRRSPQENEDDEDDYQMFVPSFSSSDLNSTRLCEDSTSSRPCSWHMGQMESTETSSSGHRIVRRASSAGESNTCPPEIGTSDRTRELQNSPKTEGQEEMTPFGSSIELTIDDIDHVYDNISYEDLKLMVAKREEAESTPSKSARDSVRPKSTPELAFTKRQAGHSKGSLYAQTDGTLSGGEASSQSTHELQAVEENIYDTIGLPDPPSLGFKCSSLKRAKRSTFLGLEADFVCCDSLRPFVSQDSLQLSEDEAPYHQATPDHGYLSLLYDSPSGNLSMPHKPVSDKLSEEVDEIWNDLENYIKKNEDKARDRLLAAFPVSKDDVPDRLHAESTPELSRDVGRSVSTLSLPESQALLTPVKSRAGRASRANCPFEEDLISKEGSFMSLNRLSLASEMPLMDNPYDLANSGLSQTDPENPDLGMEATDKTKSRVFMMARQYSQKIKKANQLLKVKSLELEQPPASQHQKSMHKDLAAILEEKKQGGPAIGARIAEYSQLYDQIVFRESPLKIQKDGWASPQESSLLRSVSPSQVHHGSGDWLLHSTYSNGELADFCLPPEQDLRSRYPTFEINTKSTPRQLSAACSVPSLQTSDPLPGSVQRCSVVVSQPNKENWCQDHLYNSLGRKGISAKSQPYHRSQSSSSVLINKSMDSINYPSDVGKQQLLSLHRSSRCESHQDLLPDIADSHQQGTEKLSDLTLQDSQKVVVVNRNLPLNAQIATQNYFSNFKETDGDEDDYVEIKSEEDESELELSHNRRRKSDSKFVDADFSDNVCSGNTLHSLNSPRTPKKPVNSKLGLSPYLTPYNDSDKLNDYLWRGPSPNQQNIVQSLREKFQCLSSSSFA", "length": 1385 }, "evidence": [ { "id": "A0A8C2MZG9", "url": "https://omabrowser.org/oma/group/A0A8C2MZG9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZG9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1190, "end_pos": 1192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 572, "end_pos": 574, "annotation": "n_glycosylation_sequon" }, { "start_pos": 580, "end_pos": 582, "annotation": "n_glycosylation_sequon" }, { "start_pos": 670, "end_pos": 672, "annotation": "n_glycosylation_sequon" }, { "start_pos": 921, "end_pos": 923, "annotation": "n_glycosylation_sequon" }, { "start_pos": 958, "end_pos": 960, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MZG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 112, "end_pos": 292, "start_aa": "Tyr", "end_aa": "Met", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MZG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZG9" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 316, "end_pos": 415, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1190, "end_pos": 1192 }, { "start_pos": 572, "end_pos": 574 }, { "start_pos": 580, "end_pos": 582 }, { "start_pos": 670, "end_pos": 672 }, { "start_pos": 921, "end_pos": 923 }, { "start_pos": 958, "end_pos": 960 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MZH4-1", "uniprot_ac": "A0A8C2MZH4", "uniprot_id": "A0A8C2MZH4_CRIGR", "mass": { "chemical_mass": 266768.0, "monoisotopic_mass": 266768.0 }, "refseq": { "ac": "XP_007649603", "name": "protein TASOR 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649603" }, "gene_names": [ { "name": "Tasor2", "type": "recommended", "evidence": [ { "id": "A0A8C2MZH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ] }, { "name": "Tasor2", "type": "synonym", "evidence": [ { "id": "XP_007649603", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649603" } ] } ], "protein_names": [ { "name": "Protein TASOR 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2MZH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4/entry#names_and_taxonomy" } ] }, { "name": "Protein TASOR 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2MZH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4/entry#names_and_taxonomy" } ] }, { "name": "protein TASOR 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007649603", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649603" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613580.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649603", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649603" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tasor2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4", "locus": {} } ], "crossref": [ { "id": "100766168", "url": "https://www.ncbi.nlm.nih.gov/gene/100766168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046432", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046432", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766168", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766168", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VPCYIQI", "url": "https://omabrowser.org/oma/group/VPCYIQI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MZH4", "url": "https://www.orthodb.org/?gene=A0A8C2MZH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16207:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16207:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12480", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12509", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12509", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23314", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23314", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007649603", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649603", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MZH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPTYKSLLQLSQNALISPWKGQLIIQGCLLCDITLWSTHGTGIPVQLPQELDFKYVMKVSSLKESLPEAAFGRQNYLEQKVCCQDLCFDLYEVELSNKQGENIDKLIRYIKNKQLAIIKCLEDGGFFILLTSSALTPEPDFGDKQMGLHGLHLFHSPQSTGAKDLKVEDGISLKVIPILPALSHALLEAKKSLPEKGIPPNILVKHSFQDLFKVDKSLSLMALRDEMKDTAFKGKLSHAFDLAPPLEKCPSESLTQLKSYFLDPSGYTLDLSAALDLLAEHPQCPCISDGICDAGFSLVMTPDPEFLDSEMELRKETETSKKSGKPLRVKKRAVALLTPASNLRVQPKRKASTSAVMLPNKRVSLGRPLSKRTASKADSGSCNPTLKLVKGQFPQKRKRGAEVLTAQFVQKTRLDRKKQEASVSKDAPVATNAKRAKKQEKSPGRVVSRPKPSVKKSTQKRKVNVARGRRNPRTRKQPQPAEKDIALHLQSEISSNGQIDGTNLSTAQQESITVIPKGFPENSIVNCDSQALNMLADLALSSAASSIPSSELRTVPCFPELPQNNVLLSKENSLHGTTDHEYHRGVKNQKGILLPKPSSDEKIDSKLDLPFSQEENMVPCAQPLAIAQPAPAEEARESSDASQNSVAVEHSYALLLAEQSKKHLHQRKLPSPAFAKNGAKGPEAGTPIGKVMPFRHLQNTSPLQKRSEDSLTKRKSLFVSSSIKDVFCSHTVLSCDGSFKITFKCEGEYAFNLDSKYTSNSLEKTVVRALHGPWNTDLPENMEDVKLLLHMWVALFYSKKNKIMGSPRKVVEHRNPAKYVCINRSVESFDQSEIEEFSSVERYSIDHLLETKEAYEGHATNMTFPGPNCVLPFISPPTTRDLELCVQNEQKEMFTGECHLDTSGSQNFTYSCNNEVTGGKDKQELPCIPETSNVGLSGVTSAQSNGSCIPSEDKTLQSTKMVSCNDSVTQATLTTTYEGARSESMMCQKSVVGNLENKDDTLHPSLLKKTGAVQDVIHHSSPVNNNYTPSVERTDDDVEYMMINLEPVTLAFEKTAYIPIHKEVNTADKPTGFNTELVKQVSSALSIQYSLSTLEKAQTECPRDIPSLAISEYKASKCLSASSLKKKTPPESLGPLQKEIPPPTSADEGLITEALPLVKSSSYSLANDKTKCPQDSFLQTQNGFRMSLDEVLEPSQVKASSPTSATLGKKQSLNCIPAISNVSDDSSEVRNNDKSSLNQEKALQTFNSLFPKQTDLSMNKEEVSRKLSGEDSDIDLTLTVSPHPSSREEMAAGEIKQLQRAPISNLGLQSRTEEMVEPEAQVSHIKNEEISSASFMSVFPVEPREPLKETQSSDLKPGTLILSKENCSPEVTEEINVPSGFPFGPLIEEVSPASSPDPIVQTEETQPSPCCLKPHGAESEKSSNFSQIKSGDLTIPEKGNSFVGPKPSMGQDKLPQVQVQISAEMPQILNNAGIEGRVTVPGEITEFSVPSEHNENLSFSEKVQCYDTELSKSTSPPKYRGNFKPLEKLIESGNPLQAVCMENRNLDIKPFALESIVPSCSPRKVVENKSLADTLVSVTTVNAIVDMSLKETSSKKNKNICDSDLKTEGDTNKQAGSVNSASIDKTDVVPANMHPEISNFVSSSDHAQCTYFTKPVSVEPGFQTQEIQTSSLLQNVGTELHEERMDLSAIGLHSNSTSTKGEQKTIHVLQDTSKCEEEKPLNDGISPQNAHSSQNTADISKSINEEPSASFVTESVNSVCGVYKEHIVSENPNMGHKTKADSETLSRNTEISVNASMCYGPLSEDTDQDSLDCRNCKLDSENLCTLRGCHANQKDAVKDSNDSFTGLNISDNNTWVYSNKISELETHIPCRSWDTELCPISTNKCMPRYVQIPDSHGIPRTYANFTISKESRDTTRTLHSLKRHRNFTANCGLLSSWTSTWHVADDLTQNTLDLEYLRFDHKLKQIVKKVDSQQASPNTSSFSEESLIQISVRTHPSTQTADASLLRLPAKSRSPILVTVGHSDTRQQSHRRRSHSPSNLDSSSFFWREQCSQSRNLKNSERSHTVPVHLNKLKYNSTLKEGRNDISLILNEYAEFNKVMMNSDQIVSQEKELSVASAEAVSQETCQPRQSVSYKDVITDLCATLHIKLKGVMREACKSPFWFYLVETEDKSFFLRTKSILKKGGHSEIELLDFCQAFQGENETLLVIIKNEDIMSHLHQIPSLLKLKHLPSVIFAGVDSPEDILNDTYQELFRSGGFVVSDDNILESLTLVQLKEIVTILEKLNENGRWKWLLHYRENKKLKEDVRVDSIAHKKNLILKSYQSVNIIELLHYHNCDSPSPTKAENLKCLLNLQVQHISARFAVFLTDKPTVSTEVFENNGILVTNVNYFTENIQKIAAPFRSSYW", "length": 2408, "header": "tr|A0A8C2MZH4-1|A0A8C2MZH4_CRIGR Isoform 1 of Protein TASOR 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tasor2 PE=3 SV=1 CANONICAL=A0A8C2MZH4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MZH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4/entry", "sequence": { "sequence": "MATPTYKSLLQLSQNALISPWKGQLIIQGCLLCDITLWSTHGTGIPVQLPQELDFKYVMKVSSLKESLPEAAFGRQNYLEQKVCCQDLCFDLYEVELSNKQGENIDKLIRYIKNKQLAIIKCLEDGGFFILLTSSALTPEPDFGDKQMGLHGLHLFHSPQSTGAKDLKVEDGISLKVIPILPALSHALLEAKKSLPEKGIPPNILVKHSFQDLFKVDKSLSLMALRDEMKDTAFKGKLSHAFDLAPPLEKCPSESLTQLKSYFLDPSGYTLDLSAALDLLAEHPQCPCISDGICDAGFSLVMTPDPEFLDSEMELRKETETSKKSGKPLRVKKRAVALLTPASNLRVQPKRKASTSAVMLPNKRVSLGRPLSKRTASKADSGSCNPTLKLVKGQFPQKRKRGAEVLTAQFVQKTRLDRKKQEASVSKDAPVATNAKRAKKQEKSPGRVVSRPKPSVKKSTQKRKVNVARGRRNPRTRKQPQPAEKDIALHLQSEISSNGQIDGTNLSTAQQESITVIPKGFPENSIVNCDSQALNMLADLALSSAASSIPSSELRTVPCFPELPQNNVLLSKENSLHGTTDHEYHRGVKNQKGILLPKPSSDEKIDSKLDLPFSQEENMVPCAQPLAIAQPAPAEEARESSDASQNSVAVEHSYALLLAEQSKKHLHQRKLPSPAFAKNGAKGPEAGTPIGKVMPFRHLQNTSPLQKRSEDSLTKRKSLFVSSSIKDVFCSHTVLSCDGSFKITFKCEGEYAFNLDSKYTSNSLEKTVVRALHGPWNTDLPENMEDVKLLLHMWVALFYSKKNKIMGSPRKVVEHRNPAKYVCINRSVESFDQSEIEEFSSVERYSIDHLLETKEAYEGHATNMTFPGPNCVLPFISPPTTRDLELCVQNEQKEMFTGECHLDTSGSQNFTYSCNNEVTGGKDKQELPCIPETSNVGLSGVTSAQSNGSCIPSEDKTLQSTKMVSCNDSVTQATLTTTYEGARSESMMCQKSVVGNLENKDDTLHPSLLKKTGAVQDVIHHSSPVNNNYTPSVERTDDDVEYMMINLEPVTLAFEKTAYIPIHKEVNTADKPTGFNTELVKQVSSALSIQYSLSTLEKAQTECPRDIPSLAISEYKASKCLSASSLKKKTPPESLGPLQKEIPPPTSADEGLITEALPLVKSSSYSLANDKTKCPQDSFLQTQNGFRMSLDEVLEPSQVKASSPTSATLGKKQSLNCIPAISNVSDDSSEVRNNDKSSLNQEKALQTFNSLFPKQTDLSMNKEEVSRKLSGEDSDIDLTLTVSPHPSSREEMAAGEIKQLQRAPISNLGLQSRTEEMVEPEAQVSHIKNEEISSASFMSVFPVEPREPLKETQSSDLKPGTLILSKENCSPEVTEEINVPSGFPFGPLIEEVSPASSPDPIVQTEETQPSPCCLKPHGAESEKSSNFSQIKSGDLTIPEKGNSFVGPKPSMGQDKLPQVQVQISAEMPQILNNAGIEGRVTVPGEITEFSVPSEHNENLSFSEKVQCYDTELSKSTSPPKYRGNFKPLEKLIESGNPLQAVCMENRNLDIKPFALESIVPSCSPRKVVENKSLADTLVSVTTVNAIVDMSLKETSSKKNKNICDSDLKTEGDTNKQAGSVNSASIDKTDVVPANMHPEISNFVSSSDHAQCTYFTKPVSVEPGFQTQEIQTSSLLQNVGTELHEERMDLSAIGLHSNSTSTKGEQKTIHVLQDTSKCEEEKPLNDGISPQNAHSSQNTADISKSINEEPSASFVTESVNSVCGVYKEHIVSENPNMGHKTKADSETLSRNTEISVNASMCYGPLSEDTDQDSLDCRNCKLDSENLCTLRGCHANQKDAVKDSNDSFTGLNISDNNTWVYSNKISELETHIPCRSWDTELCPISTNKCMPRYVQIPDSHGIPRTYANFTISKESRDTTRTLHSLKRHRNFTANCGLLSSWTSTWHVADDLTQNTLDLEYLRFDHKLKQIVKKVDSQQASPNTSSFSEESLIQISVRTHPSTQTADASLLRLPAKSRSPILVTVGHSDTRQQSHRRRSHSPSNLDSSSFFWREQCSQSRNLKNSERSHTVPVHLNKLKYNSTLKEGRNDISLILNEYAEFNKVMMNSDQIVSQEKELSVASAEAVSQETCQPRQSVSYKDVITDLCATLHIKLKGVMREACKSPFWFYLVETEDKSFFLRTKSILKKGGHSEIELLDFCQAFQGENETLLVIIKNEDIMSHLHQIPSLLKLKHLPSVIFAGVDSPEDILNDTYQELFRSGGFVVSDDNILESLTLVQLKEIVTILEKLNENGRWKWLLHYRENKKLKEDVRVDSIAHKKNLILKSYQSVNIIELLHYHNCDSPSPTKAENLKCLLNLQVQHISARFAVFLTDKPTVSTEVFENNGILVTNVNYFTENIQKIAAPFRSSYW", "length": 2408, "header": "tr|A0A8C2MZH4-1|A0A8C2MZH4_CRIGR Isoform 1 of Protein TASOR 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tasor2 PE=3 SV=1 CANONICAL=A0A8C2MZH4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766168", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766168", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XW89-1", "protein_name": "Transcription activation suppressor family member 2", "gene_name": "FAM208B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGERRDEAARRPGAGLHPEFKESSSLLQTAVSVLQSSYLDSTSQDGFRYSQAILVENDVFLNELKAFVQAKEAAGYSQEELEETFAFLLFDNEEEAKEVCQTGLRVNSSSISMLGDPAKGVYISKYADCLHPRPWYHGKSGFIVICKLIKGKVKVVSENYTTSYTCPSPGYDCHVAMSRSIMSSKSSPCQAFEQNQYYVYEVSDGSTAERPRQICPYIVIACQYREPKEMPVLARESLPEPNHKGLYCPWRGQLSIQGQLLCNIALRTPYSSTIPAQLPHNLDINHVMGLSDLKKKLPEAAFGKRNYIENEVCFQGVYFSLYEVEISNKDQHKMDQLLENLRKRDLAIIKYLQDHGVLILLTSSALAQDDGFDPKEPVSLLALFLFSSSRSVCLRVEGHNSKCERKVSDISLKIASVLPGLHYALQKATNSLWGDALGTNMCIKQHFQEYAKLEQNTQHEAPCSSCLSPAEDEGIKSCRGHSEQSFSQLQHYLSNPSSYTVEMSAALGCLAGAAQSLCNNSETAHKVDFSLAVPPDPIPPEVKGENPKAAAGLDQSKGPTKDISASSKMWVKQNKRKSNGTPVTSTRKKWSPLKMQIHPVGDSSRKRKATKKKVNITFSFPKKTGLAANSSEPMLKLAHLQFPHRRKRGAEVLSAEFVHKTQSEPVQKRTSAPSSSGSETKRPKMLKNSDVKKAPVTESTAKPMKSKVVKSVANRPSKPHTRKPTESEWKDPFSILPSKVSSQSHATDSQMGEIYPSIITGHSFDMKGSNCESHALNLLADLALGSCIPPFIPMDNGMIALSCSSSTDSAKEQQSHCKHRSSRSASDHEYHRVDKLARAAVSSSKASPNQKFPPIGKTELKDSTRIPGENNLGINSKNSQQTCVLPPKETTQEATEVNKHSFISFEHSYASLMPEHSKKHRGVPYPGSATSRNGTRSSRAAPLVGKVLPFRHQNSICPQNPFEATRARRRSSLLPPRLKEDFAKSHTVSHCGESMKVTCQWEEEYLFHLDSRYTNDALEKTVIRALHGPWDSDLPDDVEEMKLILHMWVALFYSKPSKLLSSTRKVVEHSNPKKYVSLNSTGDFFELSEDSDDCFELETCPADSRSDPDQTPSSSLDPSTRCQGCFQAEENPADSQTDADGTPGVVDSTISSSSGEEEPSSTSSESPSLTERADESNLAGKYKTEECVHDVSTVTAVEPLKEELMDAGMTSRPSNELGDAGEPQAVLGRENPHGQTLNFSPAPQSDSLCAQHGGGEQPESRWATCSGGGPSPEERGSKKDAGHGMDSSWATSNGPQRFCDSMPSEAGLKTHSNSSGLGEEERESQEPIGHTEKEEQEMEEGKREKDNSENESMIVRPVDLAFSERGDIELVNSAPPKDFGIPGDVPMSIPTASVLPCENGSMSVPSGGTGTGPQGLSGDAALSLGALQEPWGAVATPSAETNGVGLAHADGPMSVLPLSPNLSLVHGVTITSSCQSPSEMLRDGLEQKDEDRAPSAETRVLAGSKAACTAGPESPRGQAPFLTQSPDSSFVCFDGGSDVRAAPEDQVATALLQALLETPPRSGPGGSLSQRCAGDVSTELTLPSAGELHRDQNEVLEEGQCGSPSGNHTDVLNEPSGACDGQGFAFSCAARAGVSDTEASTGVYLGAEKPPSSNETSTVDASQELKTSLCDLLESDSSSSMREEKPVDNIPPLIVAQHQQNSPNSPSLPSPHQHPSPHGTAANPHCCLLEQSEQEPELCPRGKPCKTVAAAELSVAAENPALDGSLKPGCAEGAKDLGLCRAKPTESSPLDTLTPGEPGSRPCSPLHGRETEPDPVFGMDPKMSPTHAPDAVLSSSCMGQLPPDADSRSACPGSPEQCEGGSSTAPASSGAGELFMPMGEPGSLHSQGDSTVLADPHCADEELEEGEIPVLSIPTSLLCADSGESLGTSDTGDILNALLKVKHFPSTEKCVGFSWEDPSCRSSSSDSGWEKHLGCTAHPLLTPRGCHCSRSVGATRTDCNSSSSMSSGCSEGCSEEWGSLSTEEGCWWPTSQWNASSRHVPPYVNITDSRGISRDYLNFTVTTKRPGRMGSSQGQAHLLDSLMGTWRGFEEITQHTLDMEHLRFRYKLKQILRSGTPPLSTSVFPRDCSPQTSSVQGAPAPHSLRSKSPLQVTILPSDTWPHGLRSRQRRSHHRDPSHCTPSWDTCWWQRSRASSPNQGCTAPFHLSKLKYENKLKDSRGDISVILDEYAEFNRVMLSRVDTEGESRGKGLAHGEAISARRCTSLPRQTAAFEDVITELCSTLQFRLRSMAEEACRQPGMFYLVETGEEPFFARVKTLLKKDGHVEMEPLSFCKTKHRDTNWLLVVIRNEDISSHIHKVPCLLRLKHCPSVVFAGLDSPEDITDQTYQELFHTGGFVVSDNEVLETVTLGQLKEVVKVLEKLNRSGRWKWFLHYKESKKLRENVRVDANAHRKNLILKSCQDLIEVLHYHACDSSLSPGSEYMKCLLNLQVQHVSARFAVYLTEKPSVSRDVLESKGILVADISTFLGMAQEVTAPFRRSCWSLHSKVCAYTSEN", "length": 2555 }, "evidence": [ { "id": "A0A8C2MZH4", "url": "https://omabrowser.org/oma/group/A0A8C2MZH4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZVI2-1", "protein_name": "Transcription activation suppressor family member 2", "gene_name": "Tasor2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPTYKSTLELNKNALVSPWKGQLIIQGCVLCDVTLRSTYRTEAPGQLPQELDFKHVMKVSSLKESLPEAAFRRRNYLEQKVCCQDLCFDLYEVELSNKQGENIDKLMEYVKNKELALIKCLEDRGFFILLTSSALIPEPDFGDEQLGLHALHLFQAPQAAGSKDLKVEDGISLKVIPILPALSYALLEAKKSLSEEAIPPNILVKHSFQDLYKVDKSLSLMAPPQDGLKDAAPTGGLPHAFDLAPALETCPSESLAQLKCYFSDPAGYTLDLSAALDLLPEHPQFPCISDGVCDAGFSLVMTPDPEFLDSEMEIRKETETAEKPGRTLKVKKKGVTPSTPSSNQRVQPKRKASTSVITLPSKRVSLGRPTSKRTAPRTDRSCNPTLKLAKGQFPQRKRGAEVLTAQIVQKTRLERKKQDVSVSKDGPVPANAKRAKKQEKSPGRVASRPKPPVKKSPQKRKVNVARGRRNTKVRKQLQPAKKEIALHLQSEMSLDGQKDGLNLLSTSQPESIAVIPKGPPENSIVSCDSQALNMLADLALSSAASPIPSCELRSFPCFSELPQNNVLLTKESALHGASDHEYHKGVKSQKAVQLPKPYSDEKISSESNLTHSQEENLVPSAQPLAVAQSAPHEEAQEFSDASQNSVVVEHSYALLLAEQSKKHLHPRKLPSPGFVKNGAKGSEAGTPIGKVMPFRHLQSASPLQKHSEDSLTKRKSPFVSSSLREFFCSHTILSCDGSFKITFKCEGEYVFSLDSKYTSNPLEKTVVRALHGPWNTDFPENMDDVKLLLHIWVALFYSKKNKAVGSPRKVVEHKNPAKYVCINRSLESLDHSEIEEFSNVERPSVGGSVDPLLETKETHIGHATNMTFPGPKRVLPFINPPTTRDLELCVQNDQKEVFTGECHLDTSGSQNFIYSCNTEVTGGKAKQELSNKLETSNVVLSGVVSAQSNGTCIPSEDKACQSTKVVSCRDTVTQATLTTAYDGASSESMRQKSVFHNLENKVDTFHPSLLIKTGAVQDVIQHSSLINNECQPSVERRDDSVECMMVNLEPVTLAFEKSASVPVHTEVNTADKPTGFNTELVKQVPPALSIQSPVSALEKVETQSPRDVSSLAMSEYKDSTCLSASSVNEETPPESLCLLQKEIPLTSPADKGLIMEALSLVKSSSYSLASDKTKCPQDVSLQTQNGLSMSSGEVLEPSQVKVVSSTSVTLRAQQSPNCISVTSDVAGGSSEIMNSDNSSLNQKKVLQIFNSVFPKETDLSLNREEVSMELSGEDADIDLTLTISPPTSPSEEIAAGEIEQLQRATGSNVGQQSRPEEMVEPEQQGSHIKNREISSAGCISVYPVESKEMSKNYTPEVAEKVNVTSDFPFGPLIEVSPASSPDPIVQTGDRQSSPCCLKLQDSQSEKTNTFSQIKSGDLTIPEKESSLVGPKSPKEQDKLAQTQVQLSAEMPQILTNAEIEGRDAVPGKVTEVTVPSEHENLSFSEKVQCYDTELNKPTSPAKYGGNFKPLEKPVKSGNSLEADCMENRNMDMKSLALESSVSSCSPRKVENKPLSDTLVSVTINGIVNMSLKQTSSQNIKKNVCDSDIKAEADSNMQAGAVNSASIDKTDIQAYFHPEDSEFASSSECAQCTDYTNPVSAEPGFQTQEIPVVRMASLLKNIGTELHEERMDLSAVALQSNPMSAKDEQKIIHLPQDTKCEVTELLNGDFSQNAHSCQNIVDFSKSEEPSASFVPTLADSVCGNYKEHSDPSMGHETKADAATLSRDTEISASASVCHGPHSGDSVQDSLDCKNCKFDTENLRGNHASQKNAVKDSCDSFTSLNNSDDTWTCSSKISALETHISPRNQETEPCPVSPNTKCMPRYIQIPDSHGIPKTYANFTITKEFKDTTRRLHSLKRHRNLSANCDLLSSWTSTWHVADDLTQNTLDLEYLRFDHKLKQIIKKGDSQQSSPSNNIFPKESRMQFSVGTLPSTQTPEASGLHLPPKNRSPILVTVVHSDTRQQNHHHRRSYSHSSLDSAAAFWKEKCSQSRNLKNSERSQTVPFHLNKLKYNSTFKESRNDISLILNEYAEFNKVMMNSNQIVSQEKELNAASAEAVSQETYQPRQSVSYRDVITDLCATLHVKLKGVMREACKSPFWFYLVETEDKSFFLRTKSILKKGGHTEVELLDFCQAFHRENETLLVIIKNEDMIAHLHQIPSLLKLKHFPSVIFAGVDSPEDILNDTYQELFRSGGFVVSDDHVLESLSLVQLKEVLKTLEKLNENSRWKWLLHYRENKKLKEDVRVDSIAHKKNLILKSYQSVNIIDLLHYHNCDSPSSTKAEILKCLLNLQIQHISARFAVFLTDKPAVSTEIFENHGILVTDVNYFTENIQKIAAPFRSSYW", "length": 2384 }, "evidence": [ { "id": "A0A8C2MZH4", "url": "https://omabrowser.org/oma/group/A0A8C2MZH4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5DTT3-1", "protein_name": "Protein TASOR 2", "gene_name": "Tasor2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPTSKIILELNKNALISPWKGQFIIQGCLLCDITLWSTYGTVVPLQLPRELDFKYVMDVSSLKESLPEAAFRRRSYLEQKVCCQDLCFDLYEVELTNKQGENIDKLMEYVKNKELALIKCLEDKSFFILFTSSALTPEPGFGAEQMGLHGLHLFHAPQTAGAKDLKVEDGISLKVIPILPALSYALLEAKKSLSEEGIPPNILVKHSFQELYKVDKSLSLMAPPQDGVEDTASTGKLSHAFDLPPPLETCPSESLTHLKCYFSDPAGYTLDLSAALDLLAEHPQFPCIADGVCDAGFSLVMTPDPEFLDSEMEIRKTETAEKSGRKLKVKKKAVTPSSNQRVQPKRKASTTAVTLPSKRVSLGRPTSKRTVPRTDNRSCNPTLKLVKGQFPQKRKRGAEVLAAQIVQKTRLERKKQEASVSKDAPVPTNTKRAKKQEKSPGRIASQPKPPMKKSPQKRKVNVARGRRNTRKQLQPAEKEIALHLQSEISSDGQKDGLNLSTSQQESISMIPKGPPENSVISCDSQALNMLADLALSSAAASIPSCKPRNLPCVSDLPRNNVLLTKENPLLGASDHEYHKGVKSQKAVLLPKPYSDEKISSESDLTRSQEENLVPCAQPLPIAQPAPHSEARELSDASQNSVVVEHSYALLLAEQSQKHLHQRKLPSPAFVKNGIKGPEAGTPVGKVMPFRHLQNTSPLQKHSEDSLMKHKSLFVSSTLKEFFCSHTVLKCDGSFKITFKCEGEYVFSLDSKYTSNPLEKTVLRALHGPWNTDLPENVDDVKLLLHIWVALFYSKNNKVIGSPRKVVEHKNPAKYVCINRSLESLDHSEIEAFSNVERPSVEGSVDPLLETKETHIGHATNMTFPGPNRVLPFINPPTTRDLELCVQNDQKEVFTGECHLDTSGNQNFIYSCNTEVTGGKTKQELSNKLETSNVVLSGVVSAQSHGTCIPSEDKTCQSTKMVSYNDSVTQATLTTAYDEASSELMCQKSVFDNLENKVDSFHPSPLIKTDAVQDVIQHSSHINNECQPSVEKREDNVECMMVNLDPVTLAFEKNASVPIHTEVHTTDKPTGFNIELVKRVSPASSVQYPMSALEEVQTQSSRDVPSLAMSEYKDSKCLSASSVKKETPPESLCLLQKEIPPLTSSADEGLIMEALSLVKSSSYSLASDKTKCPQDDSLQTQNGLSMSLDEVLEPSKVNVVSSTSVTLREQPSPNCIPAMSDVAGASTVIMNSGSSSLNQEKILQTFSLVFPKQTDLSLKREEVSMELSGEEADINLTLTISPPTSPSEEIAAGEIEQFQKTPVSNVGQQSRSEEMVEPEEEERLIRNREINSASCMSVYPVESRELLKNCTPEVTEKVNVTLDFPFGPLIEVSPASSPDPIVQPGDRPSSPCCLKLHSSQSEKTNKFSQIKSGEVTIPEKESLFLGPESPKGQDKLAEVQVQISAEMLQITTNAEVEGRVNMPGKVTKVSVPSEHSENLSFLEKVQCNTELNELSLPAKYGGNFKPLEKSGNSLEAGCMENRNVDVKHLALESSVPSCSPRKVVENKSLTDTLVSITTSGIVNMSLKQTSSKNIKKNVCDSDVKTDSDVKTEADSNMQTEAVNSALIDKTDVQAYSHPEVSKFVSSSDSAQCTYHAKPVSVEPGFQTQEIPVVRMASLLKNIGVELHEEKMDLSATGLQSNSMSAKDEQKTMHVLQDTICEVKEFLNGDVFSQNAHSCQNTVDFSKSISEEPSASFVPEFVDAICGVYKEHTFNESPNMVHETKADAETLSRNTEISVNASMFCGPRSGAYVQDSHDCKSCKFDVENLRGNHESQKDAVKDSCDSFTSLNNSDDTWACSSKISTLETHIPPRDQETEPRLISPNKCIPRYIQIPDSHGIPKTYANFTITKEFKDTTRRLHSLKRHRNLSANCNLLSSWTSTWHVTDDLTQHTLDLEYLRFDHKLKQIKKGGSQQSSFPKESLVQISSGTSPSTQTSEASGLHLPPESRSPILVTVVRADTRQQSHHRRGCSPSSLDGSSSFWKKKCSQSRNLKNSERSQTVPFHLNKLKYNSTLKESRNDISLILNEYAEFNKIMMNSKQIVSQDEELNVASAEAVFQEAYQPRQPVSYEDVITDLCATLHVKLKGVVREACKSPFWFYLVETEDKSFLLRTKSILKKGGHIEIELLDFCQAFHRENETLLVIIKNEDIISHLHQIPSLLKLKHFPSVVFAGVDSPEDIVNETYQELFRSGGFVVSDDVILESLTLVQLKEILKILEKLNENGKWKWLLHYRESKNLKEDVRVDSIAHKKNLILKSYQSVNIIDLLHYHNCDSPSSTKAEIFKCLLNLQIQHISARFAVFLTDKPTVSTEIFENNGILVTDVNYFTENIQKIAAPFRSSYW", "length": 2382 }, "evidence": [ { "id": "A0A8C2MZH4", "url": "https://omabrowser.org/oma/group/A0A8C2MZH4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VWN6-1", "protein_name": "Protein TASOR 2", "gene_name": "TASOR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPPAHKSILERSENVLMSPWKGKLIVQDRMLCDIALWSTYGAMIPTQLPQELDFKYVMKVSSLKKRLPEAAFRKQNYLEEKVCFQDLCFNLYEVELSNRQGENIDKLTECIKNKQLAIIKCLEDRGFFILLTSSALLSEPDFGGKQMGLHGLHLFRSPLSTGVKDLKVEDDISMKVIPILSTLNCALLETKKSLPEERIHPNTLVKRHFQELYKADRSPSLSVAPQDRMKDPTFLGKLPSGFDLIPPAEKCPSESLTQLNSYFSDPSAYILEVSTALDLLAEHPQSPCVSDGICDAGFSLVMTPDPEFLVSEAEVRKETETKKDSEEMLKAKKRVFPLSPASNLRVQPKRKASMPHMVQSKKVNLCRPFPKRTASRADNSSDSPTTLKLVKGQFPQKRKRGAEVLTAQFVQKTKLDRKNQEAPISKDVPVPTNAKRARKQEKSPVKTVPRAKPPVKKSPQKQRVNIVKGNENPRNRKQLQPVKGETASKLQSEISRGCQEDGISINSVQPENTTAAHNDLPENSIVNYDSQALNMLADLALSSATSSTPVSEARNLHCSSELPQNDVLLSKENSLRGTSDHEYHRGVKTQKGELLPNPSSDRKSNSGSDLTVSQDEESLVPCSQAPAKAQSALTEEMLESSDASQSSSVSVEHSYALLLTEHSKKHLQEREILSPLFPRNGTKSPEAATPVGKVMPFRHQPGLLLQQKPPDDPVVKPKDRPPSARVKKSSCSRIVLSCDDSVKITFKCETEYAFSLDSKYTNNPLEKTVVRALHGPWNTDLPDNVEEVKLLLHMWVALFYSNQNKIIRSSRKVVEHSNPAKYVSINSTLESCELREIEESLGLEKCSADSLLETNEISRAHAAEVSFRDPNCLLPFIKTPLTQGLELCVQNEQKKTFARECDPDTQEDQNFICSYNNEVTGEEAKQESLETSNLVLSGIGSTQTNGPSVPSEEEIVQPLDSTRVASYSGTVTQATFTRTYDGPGSQPVICQSSVYGTLENKVDILDAAVQTKTGTLQDLIQHGSPINNECHPSLERKDDNMGCAVINPEPITLTFEKNAHVPIQTEGVNTADERTTFKKELIKQVSPAASLRHPVSTSENARTQGLRDIPSLVVAGQKGTKYLCASSVGGETLDKAVCSLQKETPLPVSLPSDKTMVMEALSLAKSSSHLSPSEEVRCTQDFLSQTQSLLGLSSEGLLELTQVEVDSSSASTTLGRQCSLNCISSGCHTSGDSLELRKNHKNGPNTENMNLEAFDSVFIKQTSLSVSREVSLELSEEDSDIDLALTISPPTSPREEMPAGEIEQFEEAPFSNLELQDVAEEIGEPEEVALTESREVSSADNVSVYPSVSEEPVENKERKGDNLQPVTLILSKENCTLEIAEEINVTSDFPFDSVIEEVSPASSPEPPVPVKETRPYQAVTPCILKLHGTQCEKSNQISQCESEDLGITEKENVFVGPTHPVGQDNFTQVQQMQVSAEMPLILTDHPGRTGRPTLPGKVTEEIVSSEHDEGLSFSGKVQCYGRELNQPASAAKCTGDFSPSPEKLVKSGNPLQPVSIENRNLDLKHLVLESSEPPFGPRNVIENKSLSDTLVSTTAPSGIVNVSVKQQTSPKSSQNHLFPGDLKTDEGIYLQVKSLTAASVDGAYSTQGCMCSVVPTLCSSSDNATLTHYVRPINAEPVFQAQEIPAGRMASLLKNGEPEAELHKETTGPGTAGPQSNTTSSLKGERKAIHTLQDVSTCETKELLNVGVSSLCAGPYQNTADTKENLSKEPLASFVSESFDTSVCGIATEHVEIENSGEGLRAEAGSETLGRDGEVGVNSDMHYELSGDSDLDLLGDCRNPRLDLEDSYTLRGSYTRKKDVPTDGYESSLNFHNNNQEDWGCSSWVPGMETSLPPGHWTAAVKKEEKCVPPYVQIRDLHGILRTYANFSITKELKDTMRTSHGLRRHPSFSANCGLPSSWTSTWQVADDLTQNTLDLEYLRFAHKLKQTIKNGDSQHSASSANVFPKESPTQISIGAFPSTKISEAPFLHPAPRSRSPLLVTVVESDPRPQGQPRRGYTASSLDSSSSWRERCSHNRDLRNSQRNHTVSFHLNKLKYNSTVKESRNDISLILNEYAEFNKVMKNSNQFIFQDKELNDVSGEATAQEMYLPFPGRSASYEDIIIDVCTNLHVKLRSVVKEACKSTFLFYLVETEDKSFFVRTKNLLRKGGHTEIEPQHFCQAFHRENDTLIIIIRNEDISSHLHQIPSLLKLKHFPSVIFAGVDSPGDVLDHTYQELFRAGGFVISDDKILEAVTLVQLKEIIKILEKLNGNGRWKWLLHYRENKKLKEDERVDSTAHKKNIMLKSFQSANIIELLHYHQCDSRSSTKAEILKCLLNLQIQHIDARFAVLLTDKPTIPREVFENSGILVTDVNNFIENIEKIAAPFRSSYW", "length": 2430 }, "evidence": [ { "id": "A0A8C2MZH4", "url": "https://omabrowser.org/oma/group/A0A8C2MZH4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "pmid": "" }, { "name": "HUSH2 complex", "id": "GO:0140286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140286", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of gene expression, epigenetic", "id": "GO:0045814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045814", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "pmid": "" }, { "name": "negative regulation of type I interferon production", "id": "GO:0032480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032480", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1028, "end_pos": 1030, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1223, "end_pos": 1225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1368, "end_pos": 1370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1426, "end_pos": 1428, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1498, "end_pos": 1500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1570, "end_pos": 1572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1697, "end_pos": 1699, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1796, "end_pos": 1798, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1843, "end_pos": 1845, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1850, "end_pos": 1852, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1854, "end_pos": 1856, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1906, "end_pos": 1908, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1928, "end_pos": 1930, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1980, "end_pos": 1982, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2078, "end_pos": 2080, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2204, "end_pos": 2206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2248, "end_pos": 2250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" }, { "start_pos": 825, "end_pos": 827, "annotation": "n_glycosylation_sequon" }, { "start_pos": 863, "end_pos": 865, "annotation": "n_glycosylation_sequon" }, { "start_pos": 909, "end_pos": 911, "annotation": "n_glycosylation_sequon" }, { "start_pos": 947, "end_pos": 949, "annotation": "n_glycosylation_sequon" }, { "start_pos": 967, "end_pos": 969, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MZH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" }, { "id": "PF12480", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgi associated RAB2 interactor protein-like Rab2B-binding", "eco_id": "ECO_0000259", "start_pos": 94, "end_pos": 166, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MZH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" }, { "id": "PF24630", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24630" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TASOR PIN", "eco_id": "ECO_0000259", "start_pos": 2259, "end_pos": 2398, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MZH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" }, { "id": "PF23314", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23314" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TASOR alpha/beta", "eco_id": "ECO_0000259", "start_pos": 2160, "end_pos": 2255, "start_aa": "Lys", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MZH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH4" }, { "id": "PF12509", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12509" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TASOR pseudo-PARP", "eco_id": "ECO_0000259", "start_pos": 555, "end_pos": 704, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1028, "end_pos": 1030 }, { "start_pos": 1223, "end_pos": 1225 }, { "start_pos": 1368, "end_pos": 1370 }, { "start_pos": 1426, "end_pos": 1428 }, { "start_pos": 1498, "end_pos": 1500 }, { "start_pos": 1570, "end_pos": 1572 }, { "start_pos": 1697, "end_pos": 1699 }, { "start_pos": 1796, "end_pos": 1798 }, { "start_pos": 1843, "end_pos": 1845 }, { "start_pos": 1850, "end_pos": 1852 }, { "start_pos": 1854, "end_pos": 1856 }, { "start_pos": 1906, "end_pos": 1908 }, { "start_pos": 1928, "end_pos": 1930 }, { "start_pos": 1980, "end_pos": 1982 }, { 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"field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2MZK6-1", "uniprot_ac": "A0A8C2MZK6", "uniprot_id": "A0A8C2MZK6_CRIGR", "mass": { "chemical_mass": 158240.0, "monoisotopic_mass": 158240.0 }, "refseq": { "ac": "XP_007608724", "name": "nuclear pore complex protein Nup160", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608724" }, "gene_names": [ { "name": "Nup160", "type": "recommended", "evidence": [ { "id": "A0A8C2MZK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" } ] }, { "name": "Nup160", "type": "synonym", "evidence": [ { "id": "XP_007608724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608724" } ] } ], "protein_names": [ { "name": "Nuclear pore complex protein Nup160", "type": "synonym", "evidence": [ { "id": "A0A8C2MZK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6/entry#names_and_taxonomy" } ] }, { "name": "nuclear pore complex protein Nup160", "type": "synonym", "evidence": [ { "id": "XP_007608724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608724" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613646.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007608724", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608724" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZK6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nup160", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6", "locus": {} } ], "crossref": [ { "id": "100765104", "url": "https://www.ncbi.nlm.nih.gov/gene/100765104", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056535", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056535", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056547", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056547", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059141", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059141", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765104", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765104", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLWKNNM", "url": "https://omabrowser.org/oma/group/TLWKNNM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MZK6", "url": "https://www.orthodb.org/?gene=A0A8C2MZK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21286:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21286:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11715", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11715", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23345", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23345", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23347", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23347", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23354", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23354", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007608724", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608724", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MZK6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MZK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGSLERSFVELSGAERERPRHFREFTACGIGTANAVFGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELVEESLDINLLNNAVRLKFQNCSILPSGVHVSETQNHVIILILTNQTVHRLILPHPSRMYRSELVTESQMQSIFTDIGKVDFRDPCNYQLIPTVPGLSPSSTTSAAWLSSDGEALFALPSAAGGIFVLKLPPYDLPGVTSVVELKQSSVMQRLLTGWMPTAIRGDQGPSDRALSLAVHCVEHDAFLFALCQDHKLRMWSYKDQMCLMVADMLEYVPVNKDLRLTAGTGHKLRLAYSPSMGLYLGIYMHAPKRGQFCVFQLVSTENNRYSLDHISSLFTSQETLVDFALTSTDIWALWHDAENQTVVKYINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLRSLFTPGNFINAALSKALQIFCRGTERNLDLSWSELKKEITLAVENELQGSVTEYEFSQDEFRTLQQEFWCKFYACCLQYQEALSHPLALHLNPLTNMVCLLKKGYLSFLVPSSLVDHLYLLPDEHLLTEDETTISDDADVARDVICLIKCLRMIGESVTMDMAVLMETSCYNLQSPEKAAEQILEDLITIDVENVMEDICSKLQEIRNPVHAIGLLIREMDYETEVEMEKGFDPAQPLNVRMNLSQLYGSSTAGYIVCRGVYKIASTRFLICRDLLILQQLLTRLGDAVILGAGQLFQAQQDLLHRTAPLLLSYYLIKWASQCLATDVPVDTLESNLQHLSVLELTDSGALMANKLVSSPQTIMELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEVQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPKLQYYDKVLRLLDVVGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVSDRPGASPKRNYDGECTVAPTNRQIEILELEDLEKECSLARIRLTLARHDPSAIAIAGSSSAKEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVELVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSTNSHNIVLSQKILDKLEDYQQKVDKATRDLLYRRDL", "length": 1402, "header": "tr|A0A8C2MZK6-1|A0A8C2MZK6_CRIGR Isoform 1 of Nuclear pore complex protein Nup160 OS=Cricetulus griseus OX=10029 GN=Nup160 PE=4 SV=1 CANONICAL=A0A8C2MZK6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MZK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6/entry", "sequence": { "sequence": "MAAAGSLERSFVELSGAERERPRHFREFTACGIGTANAVFGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELVEESLDINLLNNAVRLKFQNCSILPSGVHVSETQNHVIILILTNQTVHRLILPHPSRMYRSELVTESQMQSIFTDIGKVDFRDPCNYQLIPTVPGLSPSSTTSAAWLSSDGEALFALPSAAGGIFVLKLPPYDLPGVTSVVELKQSSVMQRLLTGWMPTAIRGDQGPSDRALSLAVHCVEHDAFLFALCQDHKLRMWSYKDQMCLMVADMLEYVPVNKDLRLTAGTGHKLRLAYSPSMGLYLGIYMHAPKRGQFCVFQLVSTENNRYSLDHISSLFTSQETLVDFALTSTDIWALWHDAENQTVVKYINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLRSLFTPGNFINAALSKALQIFCRGTERNLDLSWSELKKEITLAVENELQGSVTEYEFSQDEFRTLQQEFWCKFYACCLQYQEALSHPLALHLNPLTNMVCLLKKGYLSFLVPSSLVDHLYLLPDEHLLTEDETTISDDADVARDVICLIKCLRMIGESVTMDMAVLMETSCYNLQSPEKAAEQILEDLITIDVENVMEDICSKLQEIRNPVHAIGLLIREMDYETEVEMEKGFDPAQPLNVRMNLSQLYGSSTAGYIVCRGVYKIASTRFLICRDLLILQQLLTRLGDAVILGAGQLFQAQQDLLHRTAPLLLSYYLIKWASQCLATDVPVDTLESNLQHLSVLELTDSGALMANKLVSSPQTIMELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEVQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPKLQYYDKVLRLLDVVGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVSDRPGASPKRNYDGECTVAPTNRQIEILELEDLEKECSLARIRLTLARHDPSAIAIAGSSSAKEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVELVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSTNSHNIVLSQKILDKLEDYQQKVDKATRDLLYRRDL", "length": 1402, "header": "tr|A0A8C2MZK6-1|A0A8C2MZK6_CRIGR Isoform 1 of Nuclear pore complex protein Nup160 OS=Cricetulus griseus OX=10029 GN=Nup160 PE=4 SV=1 CANONICAL=A0A8C2MZK6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZK6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZK6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765104", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZBL6-1", "protein_name": "Nucleoporin 160", "gene_name": "Nup160", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAGSLERSFVELSGAERERPRHFREFTVCDLGTANAAFGAVKYSESAGGFYYVESGKLFSITRNRFIHWKTSGDTLELVEESLDLNLLNNAVRLKFQNYSLLPGGVHVSETQNHVIILILTNHTVHRLILPHPSRMYRSELVTESQMQSIFTDIGKVDFKDPCNYQLIPTVPGLSPSSTTSAAWLSSDGEALFALPSASGGIFVLKLPPYDIPGIASVVELKQSSVMQRLLTGWMPTAIRGDHGPSDRALSLAVHCVEHDAFIFALCQDHKLRMWSYKDQMCLMVADMLEYVPVNKDLRLTAGTGHKLRLAYSPSMGLYLGIYMHAPKRGQFCIFQLVSTESSRYSLDHISSLFTSQETLVDFALTSTDIWALWHDAENQTIVKYINFEHNVAGQWNPVFMQSLPEEEIVIRDDQDPREMYLRSLFTPGQFINAALCKALQIFCRGTERNLDLSWSELKKEITLAVENEVRCWLQGSVTEYEFSQDEFRTLQQEFWCKFYACCLQYQEALSHPLALHLNPLTNMVCLLKKGYLSFLVPSSLVDHLYLLPDEHLLTEDETTISDDADVARDVLCLIKCLRMIGESVTMDMAVLMETSCYNLQSPEKAAEHILEDLITIDVENVMEDICSKLQEIRNPVHAIGLLIREMDYETEVEMEKGFDPAQPLNVRMNLSQLYGSSTAGYIVCRGVYKIASTRFLICRDLLILQQLLTRLGDAVILGAGQLFQAQQDLLHRTAPLLLSYYLIKWSSQCLATDVPVDTLESNLQHLSVLELTDSGALMANKLVSSPQTIMELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMVTAVTGYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEVQKALECFCQAASEVGKEEFLDRLIRTEDGEIVSTPKLQYYDKVLRLLDVVGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLGGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVSDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLARHDPSAIAIAGSSSAKEMSTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQGEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIILSQKILDKLEDYQQKVDKATRDLLYRRDL", "length": 1406 }, "evidence": [ { "id": "A0A8C2MZK6", "url": "https://omabrowser.org/oma/group/A0A8C2MZK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MZR0-1", "protein_name": "Nucleoporin 160", "gene_name": "NUP160", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAGAVERSFVEVVGAERERPRHFREFTVCGIGTANAAAGAVKYGESAGGFYYVESGKLFSVTRNRFIHWKASGDTLELVEESLDINLLNNAVRLKFQNGVLLPGGVHVSETQNHVIILILTNQTVHRLLLPHPSRMYRSELAIESQMQSIFTDIGKVDFRDPCNYQPIPSVPGLSPGSATSAAWLSNDGEALFALPSASGGIFVLKLPPYDIPGVVSVVELKQSSVMQRLLIGWMPTAIRGDQGPSDRPLSLAVHCVEHNAFIFALCQDHKLRMWSYKDQMCLMVADMLEFVPVNKDLRLTAGTGHKLRLAYSPSMGLYLGVYLHAPKRGQFCVFQLVSAENNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTAVKYINFEHNVAGQWSPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGRFINAALCKALQIFCRGTERNLDLSWMELKKEVTLAVESELQGSVTEYEFSQEEFRSLQQEFWCKFYACCLQYQEALSHPLALHLNPHTSMVCLLKKGYLSFLVPSSLVDHLYLLPDENLLTEDETTISDDVDVARDVMCLIKCLRLIGESVTMDMSVMMEMSCYNLQSPEKAAEQILEDLITIDVDNVMEDICSKLQEIRNPIHAIGLLIREMDYETEVEMEKGFSPAQPLNVRMNLSQLYGSSTSGHIVCRSVCKIASTRFLICRDLLILQQLLMRLGDAVILGAGQLFQAQQDLLHRTAPLLLSYYLIKWGSQCLATDVPVDTLESNLQHLSVLELTDSGALTANKFVSSPQTIVELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMITAVTNYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKVLRLLDVVGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTIRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAAAVAGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAVQAEAWAWLAANQLSSVITTKESSATDEAWRLLSAYLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVELVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENTANSHNIALSQKILDKLEDYQQKVDKATRDLLYRRNL", "length": 1402 }, "evidence": [ { "id": "A0A8C2MZK6", "url": "https://omabrowser.org/oma/group/A0A8C2MZK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSIFTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPYDIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDHKLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRGQFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERNLDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPLALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICLIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATDVPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPVSGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAVAGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDKATRDLLYRRTL", "length": 1436 }, "evidence": [ { "id": "A0A8C2MZK6", "url": "https://omabrowser.org/oma/group/A0A8C2MZK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VKJ3-1", "protein_name": "Nuclear pore complex protein Nup160 homolog", "gene_name": "Nup160", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPTSKLQANMSYREVIPRNLSPAEWIEVKINTGTQSTLQDLKTFETSGGYCYKNTKNVQTRNRFIYWRTYQDVLELSEVSLDISLQRNHLRLRFTDSAVLNVSLTEQGTSVTLLVVTVSSVHRYVFPLKVAGQEGGAASPEDLLSQSIFYDVNDKINDPSTYYVTDGFGTMPNAAVSYLTQDSQSAYFAVAYQSKLLLHVMKCSTGHTITHEIKEPKLMPWFLSNLKGALTGRSETLEAATSMAFSEIGGEIFILVLYRNNELRLWSVDNLQTVASINCSTELGQDSAAQGPQNSQLRKISDQNFCLFLSHNSRAEFICVSIMPDADDASVINLVQNMVPAPQTDLVDFDATSSHIWALWSNAEGDFHVSAAYFASNNAIKWVSAALEPPPDRYCLTMEQGVDPRETYCSYIFHPGRFDRNVIAKALYMFRRVNLQFDVKQLSMSVLKEQVCQAVEDEIQNELKDFVVTDEEYLEISTRLWDRFYSCCEQYHIKLSEPTGLAVLGGMDAVCLVRRQSFALLRPCEVLEHLLLIGEHNDEVATYVAPLFRNDPEMAKGFVELMNVVTLLDKLISEDIKIELDKQLYQRESPVEVISKLVARISMIDDNGPILPSNCVRQIQQKLQNIPNLEPALEMLLDVLCMIDPDEPPHDYSLSTRFLQSSGALMGSEYGLSILSETVKQMAMIRFSVCRNLLVLQYMAYGQNEMESENVLTNLNYLNSYYTLVWIAETPISSSTPAGFEASIQRLSRAQLFSGYNRPYSSHLKHNGNDQTTLLRLFLESKGLFSALTMLLKHDSLSLDSEQLNLRQSLLQLVGYINKMLWPGSPIYVFPEWLFGTCHHIIVQDYVRILSNWCSVQKHARRFMLAVSLLDCGEAHKAVHLFHEAESGIVEDDFLFEHVLKNTPLYGKLQNSVSRGDTISPEDTKLAIVHYYLKVIQLFEQHSALDYIIQLADMAIRVLQPDDPQLPMFQSIVFNNHLQLGHYVEAYTALVNNADISRRKDCLRQLVITLFQNKCLPLLMQFSYIGLQDEFESIVESRARSMSIDQNEVYNFLYAFHTNKGNMRKASTVMYEQAMRFQVDSDAPNALEKRCSSLLICLNCLHLVDSRYRWIAKPVLGDEQVITIDQDNDDGEPKCDEDKRGQEVVVLELADIRRELVHAEALRELSFYRKDTAAYERATPEELSYLLASSGLYTAALKLSRGHSFSVLPIFESLTSACVAATEDKSSDAWNWLQNNDMADLPHRSNAADMAWTLLQKLVVDNEAKDSTLIRKSVVQRLLGLNAFLPQWLINSYKLSHSRELLHLLVKHNRLLEAADLGCEIIAGMLGAGSEYFEFKHAVNIANPQLCFPISTIDLLLHGLKINGKDDLDYEMAYFKLEEEVQRYIETIKRTTDDKMSMAVLQMRTDLQEER", "length": 1411 }, "evidence": [ { "id": "A0A8C2MZK6", "url": "https://omabrowser.org/oma/group/A0A8C2MZK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Z0W3-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "Nup160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGSLERSFVELSGAERERPRHFREFTVCDIGTASAAFGTVKYSESAGGFYYVESGKLFSITRNRFIHWKTSGDTLELVEESLDLNLLNNAVRLKFQNYNILPGGVHVSETQNHVIILILTNQTVHRLILPHPSRMYRSELVTESQMQSIFTDIGKVDFRDPCNSQLIPSVPGLSPGSTTSAAWLSSDGEALFALPSASGGIFVLKLPPYDVPGIASVVELKQSSVMQRLLTGWMPTAIRGDHGPSDRALSLAVHCVEHDAFIFALCQDHKLRMWSYKDQMCLMVADMLEYVPVNKDLRLTAGTGHKLRLAYSPSMGLYLGIYMHAPKRGQFCVFQLVSTENNRYSLDHISSLFTSQETLVDFALTSTDIWALWHDAENQTIVKYINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLRSLFTPGHFINAALCKALQIFCRGTERNLDLSWNELKKEITLAVENELQGSVTEYEFSQDEFRTLQQEFWCKFYACVLQYQEALSHPLALHLNPVTNMVCLLKKGYLSFLVPSSLVDHLYLLPDEHLLTEDETTISDDADVARDVLCLIKCLRMIGESVTMDMAVLMETSCYNLQSPEKAAEHILEDLITIDVENVMEDICSKLQEIRNPVHAIGLLIREMDYETEVEMEKGFDPAQPLNVRMNLSQLYGSSTAGYIVCRGVYKIASTRFLICRDLLILQQLLTRLGDAVILGAGQLFQAQQDLLHRTAPLLLSYYLIKWASQCLATDVPVDTLESNLQHLSVLELTDSGALMANKLVSSPQTIMELFFQEVARKQIISHLFSQPKAPLSQTGLNWPEMITAVTGYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEVQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPKLQYYDKVLRLLDVVGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVSDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKEYSLARIRLTLARHDPSVIAIAGSSSAKEMSALLVQAGLFDTAISLCQTFTLPLTPVFEGLAFKCIKLQFGGEAAQGEAWSWLATNQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIILSQKILDKLEDYQQKVDKATRDLLYRRDL", "length": 1402 }, "evidence": [ { "id": "A0A8C2MZK6", "url": "https://omabrowser.org/oma/group/A0A8C2MZK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear pore", "id": "GO:0005643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005643", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZK6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA export from nucleus", "id": "GO:0006406", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006406", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZK6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of nuclear pore", "id": "GO:0017056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017056", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZK6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1365, "end_pos": 1367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2MZK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" }, { "id": "PF23347", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23347" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NUP160 C-terminal TPR", "eco_id": "ECO_0000259", "start_pos": 1145, "end_pos": 1402, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MZK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" }, { "id": "PF23345", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23345" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NUP160 helical", "eco_id": "ECO_0000259", "start_pos": 562, "end_pos": 792, "start_aa": "Asp", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MZK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" }, { "id": "PF23354", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23354" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NUP160 middle TPR", "eco_id": "ECO_0000259", "start_pos": 836, "end_pos": 1100, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2MZK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZK6" }, { "id": "PF11715", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11715" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleoporin Nup120/160 beta-propeller", "eco_id": "ECO_0000259", "start_pos": 67, "end_pos": 540, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 124, "end_pos": 126 }, { "start_pos": 1365, "end_pos": 1367 }, { "start_pos": 381, "end_pos": 383 }, { "start_pos": 668, "end_pos": 670 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N025-1", "uniprot_ac": "A0A8C2N025", "uniprot_id": "A0A8C2N025_CRIGR", "mass": { "chemical_mass": 71479.0, "monoisotopic_mass": 71479.0 }, "refseq": { "ac": "XP_035307628", "name": "ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307628" }, "gene_names": [ { "name": "Btbd11", "type": "recommended", "evidence": [ { "id": "A0A8C2N025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N025" } ] }, { "name": "Btbd11", "type": "synonym", "evidence": [ { "id": "XP_035307628", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307628" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2N025", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N025/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035307628", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307628" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307628", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307628" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N025", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N025" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Btbd11", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N025", "locus": {} } ], "crossref": [ { "id": "cd18351", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18351", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18527", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18527", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46071", "url": 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259166", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259166" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0P2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spink4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P2", "locus": {} } ], "crossref": [ { "id": "100758031", "url": "https://www.ncbi.nlm.nih.gov/gene/100758031", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758031", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758031", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NECHLCL", "url": "https://omabrowser.org/oma/group/NECHLCL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N0P2", "url": "https://www.orthodb.org/?gene=A0A8C2N0P2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21179:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21179:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00050", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00050", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259166", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259166", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0P2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMHLWMVTLTLAGLLAMDSEGQVSAGKLVFSRMPICEHMAASPKCPKTPELICGTDGVTYKNECYLCVTRIKTKKDIQIMKDGKC", "length": 86, "header": "tr|A0A8C2N0P2-1|A0A8C2N0P2_CRIGR Isoform 1 of Serine protease inhibitor Kazal-type 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spink4 PE=4 SV=1 CANONICAL=A0A8C2N0P2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P2/entry", "sequence": { "sequence": "MAMHLWMVTLTLAGLLAMDSEGQVSAGKLVFSRMPICEHMAASPKCPKTPELICGTDGVTYKNECYLCVTRIKTKKDIQIMKDGKC", "length": 86, "header": "tr|A0A8C2N0P2-1|A0A8C2N0P2_CRIGR Isoform 1 of Serine protease inhibitor Kazal-type 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spink4 PE=4 SV=1 CANONICAL=A0A8C2N0P2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613863.1) and transcript sequence (IACG01092434.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016830792.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830792", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830792" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rbfa", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3", "locus": {} } ], "crossref": [ { "id": "100763391", "url": "https://www.ncbi.nlm.nih.gov/gene/100763391", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023799", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023799", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763391", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763391", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N0S3", "url": "https://www.orthodb.org/?gene=A0A8C2N0S3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14725", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14725", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14725:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14725:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016830792", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830792", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0S3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0S3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVVFPSRVAGRRFGRPRLTRPSVPQPLVLAGRALRGMWAGAAGLRGSCARLQALRGGHGAAFFPGRAQALHTSVASHGSKNLLKKFASKTRKKFWYEGPSLGSHLTHKPSKFEFLMKSTLKKTRKEDTVRLRVLNGLLYKALTELLCTPAVSQEVYDLNVELSKVSVTSDFSACRVYWKIGVSADQNRHTEAVLQRSAAYIRHLLMSQQTLRNVPPIVFIQDKKDILLAEVDRLLAVADFGPPDERDGLALDCLRNPEALSSHDAQEPATHPNLCGIDHEALNKQIMEYKRKKEKGLQCMNLAQPSGQELVPDLTHLLRRRKKTSSRRHQDTSPRSFLLGEEAEDEEEEDNTTEYGCQAHEAEEDWEAEARGDGVQQGPCGKREQR", "length": 387, "header": "tr|A0A8C2N0S3-1|A0A8C2N0S3_CRIGR Isoform 1 of Ribosome-binding factor A, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Rbfa PE=4 SV=1 CANONICAL=A0A8C2N0S3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0S3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3/entry", "sequence": { "sequence": "MRVVFPSRVAGRRFGRPRLTRPSVPQPLVLAGRALRGMWAGAAGLRGSCARLQALRGGHGAAFFPGRAQALHTSVASHGSKNLLKKFASKTRKKFWYEGPSLGSHLTHKPSKFEFLMKSTLKKTRKEDTVRLRVLNGLLYKALTELLCTPAVSQEVYDLNVELSKVSVTSDFSACRVYWKIGVSADQNRHTEAVLQRSAAYIRHLLMSQQTLRNVPPIVFIQDKKDILLAEVDRLLAVADFGPPDERDGLALDCLRNPEALSSHDAQEPATHPNLCGIDHEALNKQIMEYKRKKEKGLQCMNLAQPSGQELVPDLTHLLRRRKKTSSRRHQDTSPRSFLLGEEAEDEEEEDNTTEYGCQAHEAEEDWEAEARGDGVQQGPCGKREQR", "length": 387, "header": "tr|A0A8C2N0S3-1|A0A8C2N0S3_CRIGR Isoform 1 of Ribosome-binding factor A, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Rbfa PE=4 SV=1 CANONICAL=A0A8C2N0S3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0043024", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3" } ], "pmid": "" }, { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3" } ], "pmid": "" }, { "name": "mitochondrial small ribosomal subunit assembly", "id": "GO:0180026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180026", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S3" } ], "pmid": "" } ] } ] }, 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281049", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281049" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccnjl", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6", "locus": {} } ], "crossref": [ { "id": "cd20528", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20528", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20529", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20529", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767662", "url": "https://www.ncbi.nlm.nih.gov/gene/100767662", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767662", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767662", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N0S6", "url": "https://www.orthodb.org/?gene=A0A8C2N0S6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02984", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02984", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281049", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281049", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0S6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIYLLDHFMDQYNITTSKQLYTVAVSCLLLASKFEDREDRVPKLEQINSTRILSSQNFSLTKKELLTTELLLLEAFSWDLCLPTPAHFLDYYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRVSSYSLEHLSTCIEILLVAYDNVLKDAVAVKSQALAMVPGTSPAPTQVLFQPPTYPTLSQPPPTLAQFQSPAQDLCLAYRDSLQAHRSGTLLSGDTGPSLHTPYPTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHIFPTGCFDS", "length": 386, "header": "tr|A0A8C2N0S6-1|A0A8C2N0S6_CRIGR Isoform 1 of Cyclin-J-like protein OS=Cricetulus griseus OX=10029 GN=Ccnjl PE=3 SV=1 CANONICAL=A0A8C2N0S6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6/entry", "sequence": { "sequence": "MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIYLLDHFMDQYNITTSKQLYTVAVSCLLLASKFEDREDRVPKLEQINSTRILSSQNFSLTKKELLTTELLLLEAFSWDLCLPTPAHFLDYYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRVSSYSLEHLSTCIEILLVAYDNVLKDAVAVKSQALAMVPGTSPAPTQVLFQPPTYPTLSQPPPTLAQFQSPAQDLCLAYRDSLQAHRSGTLLSGDTGPSLHTPYPTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHIFPTGCFDS", "length": 386, "header": "tr|A0A8C2N0S6-1|A0A8C2N0S6_CRIGR Isoform 1 of Cyclin-J-like protein OS=Cricetulus griseus OX=10029 GN=Ccnjl PE=3 SV=1 CANONICAL=A0A8C2N0S6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB4/entry", "sequence": { "sequence": "MELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIYLLDHFMDQYNITTSKQLYTVAVSCLLLASKFEDREDRVPKLEQINSTRILSSQNFSLTKKELLTTELLLLEAFSWDLCLPTPAHFLDYYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRVSSYSLEHLSTCIEILLVAYDNVLKDAVAVKSQALAMVPGTSPAPTQVLFQPPTYPTLSQPPPTLAQFQSPAQDLCLAYRDSLQAHRSGTLLSGDTGPSLHTPYPTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHIFPTGCFDS", "length": 366, "header": "tr|A0A9J7GBB4-1|A0A9J7GBB4_CRIGR Computationally mapped isoform of Cyclin-J-like protein OS=Cricetulus griseus OX=10029 GN=Ccnjl PE=3 SV=1 CANONICAL=A0A8C2N0S6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0S6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767662", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767662", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N0S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6" }, { "id": "SM01332", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01332" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin C-terminal", "eco_id": "ECO_0000259", "start_pos": 144, "end_pos": 274, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2N0S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0S6" }, { "id": "SM00385", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00385" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-like", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 135, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 118, "end_pos": 120 }, { "start_pos": 74, "end_pos": 76 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N0T8-1", "uniprot_ac": "A0A8C2N0T8", "uniprot_id": "A0A8C2N0T8_CRIGR", "mass": { "chemical_mass": 95694.0, "monoisotopic_mass": 95694.0 }, "refseq": { "ac": "XP_027244607", "name": "von Willebrand factor A domain-containing protein 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244607" }, "gene_names": [ { "name": "Vwa7", "type": "recommended", "evidence": [ { "id": "A0A8C2N0T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0T8" } ] }, { "name": "Vwa7", "type": "synonym", "evidence": [ { "id": "XP_027244607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244607" } ] } ], "protein_names": [ { "name": "von Willebrand factor A domain-containing protein 7", "type": "synonym", "evidence": [ { "id": "XP_027244607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244607" }, { "id": "A0A8C2N0T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0T8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244607", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244607" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0T8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0T8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Vwa7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0T8", "locus": {} } ], "crossref": [ { "id": "100770280", "url": "https://www.ncbi.nlm.nih.gov/gene/100770280", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056475", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056475", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057613", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057613", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770280", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770280", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N0T8", "url": "https://www.orthodb.org/?gene=A0A8C2N0T8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14905", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14905", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14905:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14905:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23610", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23610", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23619", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23619", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244607", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244607", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0T8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0T8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0T8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAPLTHLGPPILLLLQLLPLPTFAFFPNIWSLLAAPGSVTHQDLTEEAALNVTLQLFLDRPSPGRPRLRLEDYRGRTLLADDIFAAYFGPGSPSRRFRAALGEVSRANAAQDFLPASRNNPDLHFDAERLVQGRTLLVGALRETLVAATAFESALARQRLGAALHALQDFYSHSNWVELGKQQPHPHLLWPRPELWSLAQVGDPTCSDCEELSCPGNMLDFTLLTSGYFGTHPPKPRGKCSHGGQFDQSSSQPPRGGINKDSTSPSFSPHHTLHLQAAEVALLASIQVFSLLRSRLGDRGFSRLLDITPASSLSFVLDTTGSMGEEINAAKIQARRIVEQRQDSPMEPTSYVLVPFHDPGFGPVFTTSDPDSFWQKLNEIHALGGGDEPEMCLSALELALMHTPPLSDIFVFTDASPKDTFLTNRVESLTRERRCRVTFLVTEDPSRVQGRVRREVLSPLRFEPYEAIALASGGEVIFTKDQHIQDVAAIVGESMAGLVTLPLEPPVFAPGETCVFTVDRLLRQVTVRIHGDISSFWIKSPAGVSQGPEEGIGPLGHTRRFGQFWTVTMTDPPQTGSWEMQVAAEGTPRVRVQAQTSLDFLFHFGIPVEDGPHPGLYPLTQPVAGLQTQLLVEVTGLVSRHNPEDGQPHFSHVVLRRVPEGTHLGRVPLEPVGPPERGLLAASLPPTLLSIAAPFSLELAGQDGGGQGLRRTAPQPCAVAPVLLELSGPPASLAPGSKAPLSLHVASFSGPQDLDLRTSVNPRFSLTSNLSRAHLGLNESAWGRLWLEVPDSAAPDSVVMVTVTALGQGASPVPPTHAFLRLLVLASPSQGPMASPAHSAGRVLPPAASTPLPSPSVIRARAGEGTVSTSWWGTVAGVLFLLDCSSW", "length": 888, "header": "tr|A0A8C2N0T8-1|A0A8C2N0T8_CRIGR Isoform 1 of von Willebrand factor A 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294938" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0U0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0U0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Triqk", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0U0", "locus": {} } ], "crossref": [ { "id": "100770565", "url": "https://www.ncbi.nlm.nih.gov/gene/100770565", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770565", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NIGKQDY", "url": "https://omabrowser.org/oma/group/NIGKQDY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N0U0", "url": "https://www.orthodb.org/?gene=A0A8C2N0U0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20583:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20583:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294938", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0U0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0U0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRKDSSTTKLPVDQYRKQIGKQDYKKTKPILRATKLKAEAKKTAIGIKEVGLMLAAILALLLAFYAFFYLRLSTNIDSDLDPDED", "length": 86, "header": "tr|A0A8C2N0U0-1|A0A8C2N0U0_CRIGR Isoform 1 of Triple QxxK/R motif-containing protein OS=Cricetulus griseus OX=10029 GN=Triqk PE=3 SV=1 CANONICAL=A0A8C2N0U0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0U0/entry", "sequence": { "sequence": "MGRKDSSTTKLPVDQYRKQIGKQDYKKTKPILRATKLKAEAKKTAIGIKEVGLMLAAILALLLAFYAFFYLRLSTNIDSDLDPDED", "length": 86, "header": "tr|A0A8C2N0U0-1|A0A8C2N0U0_CRIGR Isoform 1 of Triple QxxK/R motif-containing protein OS=Cricetulus griseus OX=10029 GN=Triqk PE=3 SV=1 CANONICAL=A0A8C2N0U0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613788.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500432", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500432" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0W3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH3orf84", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3", "locus": {} } ], "crossref": [ { "id": "100772342", "url": "https://www.ncbi.nlm.nih.gov/gene/100772342", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772342", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772342", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NSGFYGH", "url": "https://omabrowser.org/oma/group/NSGFYGH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N0W3", "url": "https://www.orthodb.org/?gene=A0A8C2N0W3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35539", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35539", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35539:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35539:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15115", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15115", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500432", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500432", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0W3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDALIGSWYNSGFYGHYRGQVKSESAGEYRLAAKPPPPAVFLQRCEEPVRQHFFSKHDNRTSFDKGPYWLLQGIGRRKDLERLWKRHTFLRWAPCELELSQQPPLESSYQTDFGSGSGLSRLPQRLVHFMQIQPPYVSTTYQHNFCHPSRGGHCGSAKVRPQEPATEIRPDRPGIPRPKLLQHYLHDGVSECLNWSQALNRLC", "length": 204, "header": "tr|A0A8C2N0W3-1|A0A8C2N0W3_CRIGR Isoform 1 of Uncharacterized protein C3orf84 homolog OS=Cricetulus griseus OX=10029 GN=CUNH3orf84 PE=4 SV=1 CANONICAL=A0A8C2N0W3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3/entry", "sequence": { "sequence": "MRDALIGSWYNSGFYGHYRGQVKSESAGEYRLAAKPPPPAVFLQRCEEPVRQHFFSKHDNRTSFDKGPYWLLQGIGRRKDLERLWKRHTFLRWAPCELELSQQPPLESSYQTDFGSGSGLSRLPQRLVHFMQIQPPYVSTTYQHNFCHPSRGGHCGSAKVRPQEPATEIRPDRPGIPRPKLLQHYLHDGVSECLNWSQALNRLC", "length": 204, "header": "tr|A0A8C2N0W3-1|A0A8C2N0W3_CRIGR Isoform 1 of Uncharacterized protein C3orf84 homolog OS=Cricetulus griseus OX=10029 GN=CUNH3orf84 PE=4 SV=1 CANONICAL=A0A8C2N0W3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0W3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0W3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772342", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772342", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8W4FAZ4-1", "protein_name": "Ciliary microtubule inner protein 7", "gene_name": "CIMIP7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKSALVGSWHNSGFYGHYRGQFKSESAREYRLAAKPQPPAVFLQRCQEPARQHYFSKHDNRTSFDKGPYCLLQGIGRRKDLARLWQQHTFLHWAPCELELSQQRPLQSSYQANFQSVPGLSGLPQRLVHFVQIQPPRASTTYQQNFCQPSRGGHCGSDNMGLQASVTNTLPDLPEIPRPKLLQHYLHAGVSECLNWSRTLNKDS", "length": 204 }, "evidence": [ { "id": "A0A8C2N0W3", "url": "https://omabrowser.org/oma/group/A0A8C2N0W3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "H3BNL1-1", "protein_name": "Ciliary microtubule inner protein 7", "gene_name": "CIMIP7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQSALVGSWHNNGFYGHYRSQFKSESAREYHLAAKPQPPAVFLQRCQEPAQRHFFSKHDNRTSFDKGPYCLLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADFRPGPGLSGLPQHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVTDVLPDLPGIPRPKLLQHYLHAGVSECLNWSRALNKDS", "length": 204 }, "evidence": [ { "id": "A0A8C2N0W3", "url": "https://omabrowser.org/oma/group/A0A8C2N0W3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N0W3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0W3" }, { "id": "PF15115", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Domain of unknown function with conserved HDNR motif", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 115, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 195, "end_pos": 197 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N130-1", "uniprot_ac": "A0A8C2N130", "uniprot_id": "A0A8C2N130_CRIGR", "mass": { "chemical_mass": 68593.0, "monoisotopic_mass": 68593.0 }, "refseq": { "ac": "XP_027288979", "name": "prickle planar cell polarity protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288979" }, "gene_names": [ { "name": "Prickle3", "type": "recommended", "evidence": [ { "id": "A0A8C2N130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130" } ] }, { "name": "Prickle3", "type": "synonym", "evidence": [ { "id": "XP_027288979", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288979" } ] } ], "protein_names": [ { "name": "Prickle planar cell polarity protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2N130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130/entry#names_and_taxonomy" } ] }, { "name": "prickle planar cell polarity protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027288979", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288979" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288979", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288979" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N130", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prickle3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130", "locus": {} } ], "crossref": [ { "id": "cd09415", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09415", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09418", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09418", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09420", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09420", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09827", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09827", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758570", "url": "https://www.ncbi.nlm.nih.gov/gene/100758570", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033726", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033726", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033727", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033727", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758570", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N130", "url": "https://www.orthodb.org/?gene=A0A8C2N130", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24211", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24211", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24211:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24211:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06297", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06297", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288979", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288979", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N130", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N130-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2S0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFARGSRRRRSGRAPPEAEDPAHGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVHTVPVDLERIMCRLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGTVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHSGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMGHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLGAETTAPGPGRRSWSAGTVTAQLTASTASFPAAEGTSETASKGTCTKAEPAAGSDEPSRFLRGAPHRHSMPELGLRGAPEPPTETPGHPALNPDDNAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRPRSPPPRAPSCRHRRRRHRRRGSHHHHHRPGRHGHHRCNAGSGSDSGSCSSSPSSPSSESSEDDGFFLGERIPLPPHLCRSRTTQDAATETFNNPAPPLVQVSHPVMPRHTRDKNCIVA", "length": 618, "header": "tr|A0A8C2N130-1|A0A8C2N130_CRIGR Isoform 1 of Prickle planar cell polarity protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prickle3 PE=3 SV=1 CANONICAL=A0A8C2N130-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N130-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130/entry", "sequence": { "sequence": "MFARGSRRRRSGRAPPEAEDPAHGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVHTVPVDLERIMCRLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGTVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHSGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMGHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLGAETTAPGPGRRSWSAGTVTAQLTASTASFPAAEGTSETASKGTCTKAEPAAGSDEPSRFLRGAPHRHSMPELGLRGAPEPPTETPGHPALNPDDNAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRPRSPPPRAPSCRHRRRRHRRRGSHHHHHRPGRHGHHRCNAGSGSDSGSCSSSPSSPSSESSEDDGFFLGERIPLPPHLCRSRTTQDAATETFNNPAPPLVQVSHPVMPRHTRDKNCIVA", "length": 618, "header": "tr|A0A8C2N130-1|A0A8C2N130_CRIGR Isoform 1 of Prickle planar cell polarity protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prickle3 PE=3 SV=1 CANONICAL=A0A8C2N130-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GL69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL69/entry", "sequence": { "sequence": "MFARGSRRRRSGRAPPEAEDPAHGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVHTVPVDLERIMCRLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGTVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHSGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMGHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIAAGSDEPSRFLRGAPHRHSMPELGLRGAPEPPTETPGHPALNPDDNAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRPRSPPPRAPSCRHRRRRHRRRGSHHHHHRPGRHGHHRCNAGSGSDSGSCSSSPSSPSSESSEDDGFFLGERIPLPPHLCRSRTTQDAATETFNNPAPPLVQVSHPVMPRHTRDKNCIVA", "length": 518, "header": "tr|A0A9J7GL69-1|A0A9J7GL69_CRIGR Computationally mapped isoform of Prickle planar cell polarity protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Prickle3 PE=3 SV=1 CANONICAL=A0A8C2N130-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A3/entry", "sequence": { "sequence": 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"evidence": [ { "database": "UniProtKB", "id": "A0A8C2N130", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 184, "end_pos": 249, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2N130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N130" }, { "id": "PS51303", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51303" } ], 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Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274974" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N142", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N142" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836166", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N142", "locus": {} } ], "crossref": [ { "id": "113836166", "url": "https://www.ncbi.nlm.nih.gov/gene/113836166", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836166", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836166", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N142", "url": "https://www.orthodb.org/?gene=A0A8C2N142", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37363", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37363", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37363:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37363:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N142", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N142", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N142-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N142-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELTGEYVGCDGEPRRLQVSCEASGDADPLQSLSAGVARMRELVAEFFGPLVEQRDAQGVTADPEDAEEGDDEDDTEDEKNIGSRTNSDGPSAKRQKPAS", "length": 100, "header": "tr|A0A8C2N142-1|A0A8C2N142_CRIGR Isoform 1 of EKC/KEOPS complex subunit GON7-like OS=Cricetulus griseus OX=10029 GN=LOC113836166 PE=4 SV=1 CANONICAL=A0A8C2N142-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N142-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N142/entry", "sequence": { "sequence": "MELTGEYVGCDGEPRRLQVSCEASGDADPLQSLSAGVARMRELVAEFFGPLVEQRDAQGVTADPEDAEEGDDEDDTEDEKNIGSRTNSDGPSAKRQKPAS", "length": 100, "header": "tr|A0A8C2N142-1|A0A8C2N142_CRIGR Isoform 1 of EKC/KEOPS complex subunit GON7-like OS=Cricetulus griseus OX=10029 GN=LOC113836166 PE=4 SV=1 CANONICAL=A0A8C2N142-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N148-1", "uniprot_ac": "A0A8C2N148", "uniprot_id": "A0A8C2N148_CRIGR", "mass": { "chemical_mass": 80271.0, "monoisotopic_mass": 80271.0 }, "refseq": { "ac": "XP_003500723", "name": "coiled-coil domain-containing protein 13", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500723" }, "gene_names": [ { "name": "Ccdc13", "type": "recommended", "evidence": [ { "id": "A0A8C2N148", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ] }, { "name": "Ccdc13", "type": "synonym", "evidence": [ { "id": "XP_003500723", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500723" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 13", "type": "synonym", "evidence": [ { "id": "A0A8C2N148", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 13", "type": "synonym", "evidence": [ { "id": "XP_003500723", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500723" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613803.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003500723.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500723", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500723" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc13", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148", "locus": {} } ], "crossref": [ { "id": "100766977", "url": "https://www.ncbi.nlm.nih.gov/gene/100766977", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766977", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766977", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VNINTMN", "url": "https://omabrowser.org/oma/group/VNINTMN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N148", "url": "https://www.orthodb.org/?gene=A0A8C2N148", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31935", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31935", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31935:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31935:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003500723", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500723", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N148-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEESSADTLRLQFKAMQELQHRRLQKHMEKKKEKELSCKGKADQEELAEIPDNLSLLDTEEQNLKTIFEKRVLEDEIQQLRNELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRFAFTGTTGMAGDLVATKIIELSKKNRGLMAESESAKVRVKQLTNRIQELEHELQMAPAKPPAKGTTDTGAKPSRTQTGDRALLETPEVKALQDRLAATNLKMSDLRNQIQSAKQELRMAQKVLASEVGEDVNVQQLLTSPGTWRGRAQQILVLQSKVRELEKQLGQRQNKTTDSSSSEIAVSSDPRKLTAQEKNLLRIRSLERDKLESWEKLAGERDTLQTELEELRRKFEGMRSRNKVLSSEVKTLRSQMLTLVEKGRHDDELIDALMDQLKQLQDILGSLSVQEESRRTSQHRLDQKVNSEAQQSSSLVAQLRAMVAEREAKVRQLELEIGQLSVQYLHNKGAGEGASPIHARFPEDQTPVTNSPASSGDHVRRLGSSRSVSSLGHTLVESSLTRPSLPSPHGTSPRFLDSPEQKGWQAQAAEMKALWQAAEVERDRLNEFVTVLQKRVEESSSKLLDAEQRLQEERQRAVLLEQHLEKMRLEPSRPPASQKAARNKSGPPTPSTKHNPTGSAKKDSSSSQLSDVPMESQIEELTTRLTIQMEENRVLRDALGSALRGKEEDFRMYHQTLGQVKGVFLQALRQQKANKL", "length": 709, "header": "tr|A0A8C2N148-1|A0A8C2N148_CRIGR Isoform 1 of Coiled-coil domain-containing protein 13 OS=Cricetulus griseus OX=10029 GN=Ccdc13 PE=4 SV=1 CANONICAL=A0A8C2N148-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N148-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148/entry", "sequence": { "sequence": "MAAEESSADTLRLQFKAMQELQHRRLQKHMEKKKEKELSCKGKADQEELAEIPDNLSLLDTEEQNLKTIFEKRVLEDEIQQLRNELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRFAFTGTTGMAGDLVATKIIELSKKNRGLMAESESAKVRVKQLTNRIQELEHELQMAPAKPPAKGTTDTGAKPSRTQTGDRALLETPEVKALQDRLAATNLKMSDLRNQIQSAKQELRMAQKVLASEVGEDVNVQQLLTSPGTWRGRAQQILVLQSKVRELEKQLGQRQNKTTDSSSSEIAVSSDPRKLTAQEKNLLRIRSLERDKLESWEKLAGERDTLQTELEELRRKFEGMRSRNKVLSSEVKTLRSQMLTLVEKGRHDDELIDALMDQLKQLQDILGSLSVQEESRRTSQHRLDQKVNSEAQQSSSLVAQLRAMVAEREAKVRQLELEIGQLSVQYLHNKGAGEGASPIHARFPEDQTPVTNSPASSGDHVRRLGSSRSVSSLGHTLVESSLTRPSLPSPHGTSPRFLDSPEQKGWQAQAAEMKALWQAAEVERDRLNEFVTVLQKRVEESSSKLLDAEQRLQEERQRAVLLEQHLEKMRLEPSRPPASQKAARNKSGPPTPSTKHNPTGSAKKDSSSSQLSDVPMESQIEELTTRLTIQMEENRVLRDALGSALRGKEEDFRMYHQTLGQVKGVFLQALRQQKANKL", "length": 709, "header": "tr|A0A8C2N148-1|A0A8C2N148_CRIGR Isoform 1 of Coiled-coil domain-containing protein 13 OS=Cricetulus griseus OX=10029 GN=Ccdc13 PE=4 SV=1 CANONICAL=A0A8C2N148-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 622, "start_aa": "Thr", "end_pos": 622, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr622", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766977", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766977", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AFB0-1", "protein_name": "Coiled-coil domain containing 13", "gene_name": "Ccdc13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAADESSADTLRLQFKAMQELQHRRLQKQMERKREKELSCQSKADDQEGLMVIPDGLSLLDTEEQNLKNIFEKRVLEDEVQQLRSELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRFAFTGATGMAGDLVATKIVELSKKNRGLMAESESAKVRIKQLTNRIQELEHELQMASAKPPAKGATDAGTKPLKTQTGDKAVQPETPEVKALQDRLAATNLKMSDLRNQIQSAKQELRVAQKVLANEVGEDVNIQQLLASPGTWRGRAQQILVLQSKVRDLEKQLGQRQNKIAGSPSSELPLNSDPRKLTAQEKNLLRIRSLERDKQESWEKLTSERDTLQTELEEQKKKFEGIRSRNKVLSSEVKTLRSQMVTLVEKGRHDDELIDALMDQLKQLQDILGSLSVQEESRRTSQQHLDQKVNSEAQRSSSLVAQLRAMVADREAKVRQLELEIGQLSVQYLHGKGGGEGASPTDARFPEDQTPITNSPASAGDHVGRLGSSRSVTSLGHTLVESALTRPSLPSPHGTSPRFSDSPEQKGWQAQAAEMKALWQAAEVERDRLNEFVTVLQKRVEESSSKLLEAERRLQEERQRAVLLEQHLEKLRLEPSRALVSQKAPKNKPGPPAASTKPNSTGSAKKDSSSTQLSDMPMESQIEELNARLAIQMEENGVLRDALGSALRGKEEDFRMYHQTLGQVKGVFLQALRQQKANKQ", "length": 711 }, "evidence": [ { "id": "A0A8C2N148", "url": "https://omabrowser.org/oma/group/A0A8C2N148/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3YV10-1", "protein_name": "Coiled-coil domain-containing protein 13", "gene_name": "Ccdc13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAADESSADTLRLQFKAMQELQHRRLQKQMEKKREKELSCQSKADNQEGFMVIPDGLSLLDTEEQNLKNIFEKRVLEDEIQHLRSELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRFAFTGASGMAGDLVATKIVELSKKNRGLMAESESAKVRIKQLTNRIQELEHQLQMASAKPPSKGATDAGAKPLKTQTGDRALLETPEVKALQDRLAATNLKMSDLRNQIQSAKQELRVAQKVLANEVGEDVNIQQLLASPGTWRGRAQQILVLQSRVRDLEKQLGQRQNKPAGSSSSEVPLSSDSRKMTAQEKNLLRIRSLERDKQESWEKLASERDTLQTELEELRKKFEGMRSRNKVLSSEVKTLRSQMTTLVEKGRHDDELIDALMDQLKQLQDILSSLSVQEESRRTSQQHLDQKVNSEAQRSSSLVAQLRAMVADREAKVRQLELEIGQLSVQYLHGKGGGEGASPADARFPEDQTPITNSPASAGDHVGRLGSSRSVTSLGHTLVESALTRPSLPSPHGTSPRFSDSPEQKGWQAQAAEMKALWQAAEVERDRLNEFVTVLQKRVEESSSKLLEAERRLQEERQRAVLLEQHLEKMRLEPSRASVSQKTKNKPGPPAANTKPNSAGSAKKDSSSTQLCDMPMESQIQELNARLAIQMEENGILRDALGSALRGKEEDFRMYHQTLGQVKGVFLQALRQQKANKQ", "length": 709 }, "evidence": [ { "id": "A0A8C2N148", "url": "https://omabrowser.org/oma/group/A0A8C2N148/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IYE1-1", "protein_name": "Coiled-coil domain-containing protein 13", "gene_name": "CCDC13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAADESSQNTLRLQFKAMQEMQHKRLQKQMEKKREKELSLKSRADDQEEPLEVSDGLSLLHAGEPNSKNSFEKRVLEDEIEHLRNELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRFAFTGTAGVAGDVVATKIVELSKKNRLLMAESEGAKTRVKQLTNRIQELERELQTALTRLSAKGATDAGAKPPRAQMGDRALLETPEVKALQDRLVATNLKMSDLRNQIQSVKQELRMAQKVLAREVGEDINVQQLLSSPGTWRGRAQQILVLQSKVQELEKQLGQARSQSAGTASDELSVYPDPRKLSAQEKNLLRIRSLEREKQEGLEKLASERDVLQRELEELKKKFEGMRSRNKLLSSEMKTLKSQMGTLVEKGRHDDELIDALMDQLKQLQEILGSLSLQEEKTRVSQHHLDQQLNSEAQRSNSLVAQLQAMVAEREAKVRQLEMEIGQLNVHYLRNKGVGEGSSGREVSPAYTQFLEDPGLTKSPASAGDHVGRLGSSRSVTSLGHTLVESALTRPSLPSPHRTSPRFSDSPEQKGWQAQVSEIKALWQAAEVERDRLTEFVTVLQKRVEESNSKLLESERKLQEERHRTVVLEQHLEKIRLEPGKASASQRAAPRTKTGLPTSNNRHNPTGSEKKDPSFAQLSDVPVESQMEELTTRLAIQVEENEMLKAALGSALRGKEEDFRMYHEILGQVKSVFLQALRQQKTGKQ", "length": 715 }, "evidence": [ { "id": "A0A8C2N148", "url": "https://omabrowser.org/oma/group/A0A8C2N148/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VV90-1", "protein_name": "Coiled-coil domain-containing protein 13", "gene_name": "Ccdc13", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METLPEEYVAHRDQELLGCKVGRSSRRRHDHDAMAAAHVVLTTAVVKPKPTKPESKKLRKKLSECEQEKQSLAQAIHEKNQEISDLKKSVDSLNEVLNSVPIDELRCNSSIASTKILELSKKNRQMRSELEQAKSRLGKKDAQIEKLEKELRAHEEKLQHNQDLPKKGCSPDELQAKINSMQQKLFETRNRNTELQSQLKLAQKCLQHEIGESCNINILANNLNQANWRGRAQQIIALNQKVHELKARLDFYEDRAVDRAEYAAPVPLGSDLELVTGSCRSHHASSERLGGGDGGGATTASFDRFTPGVRKSEILHRAKVEALEKEILSLQNQLEDQRSKTLALKVRNKNLNEEMNKYKILYNELEEQTDFNGTNINTMNDKLNQQRIQYENRLDDMRGELVRVTEERDLSRRQMEELSGMHLELQTVVKQKDVAMASLQDMIKKLEMDLRALSGGFLFSCREFRKEEFVGILDALEVEKNQLMLLTKTLGDRLETERAKNEAAQEQIGKLKARISRLEVKIRDLEKELDVQSDKKKRTQRMADYASSLSRTSLNGSIGSFCFENQSQYQSTNTLNSAGQPEPRIEDLKNNLELAKEKITMLTEKLEYITEEKNADAKFFEDTINSTKTIILETVLGAREKGLSDRSKNADKSTSETSIQ", "length": 660 }, "evidence": [ { "id": "A0A8C2N148", "url": "https://omabrowser.org/oma/group/A0A8C2N148/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "pmid": "" }, { "name": "axonemal central pair", "id": "GO:0097540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097540", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "pmid": "" }, { "name": "axoneme assembly", "id": "GO:0035082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035082", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "pmid": "" }, { "name": "cytoplasmic microtubule organization", "id": "GO:0031122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031122", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N148", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N148" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 616, "end_pos": 618, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 622 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 287, "end_pos": 289 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 616, "end_pos": 618 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", 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Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 477 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614086.1) and transcript sequence (IACG01086445.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003504830.2. 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Isoform 1 of SH2 domain-containing adapter protein F isoform X3 OS=Cricetulus griseus OX=10029 GN=Shf PE=4 SV=1 CANONICAL=A0A8C2N163-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N163-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N163/entry", "sequence": { "sequence": "MLLSGAPPPGSGPGPRAQGSAGGGPGGSRRGAGGAGAGPGGGGSGGVAKWLREHLGFRGGGGGGGAKPAPPEPDYRPPAPCPAAPPAPPPDILAAYRLQRDRDFEDPYSGGSSVSAALSTPAAPGPTPPPRHGSPPHRLIRVETPGPPAPPPEERISGPHASSDRLAILEDYADPFDVQETAEGSGGTSMAPEKVPENDGYMEPYEAQKMMAEIRGSKETAAQPLPLYDTPYEPEDEGASPEGEGTPWPRESRLPEDDERPPEEYDQPWEWKKERISKAFAAQFEGSEKNCLSPGREEKGRLPPRLSAGNPKSAKPLGMEPSSPLGEWTDPALPLENQVWYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEHKYVLGQNSPPFSSVPEIVHHYASRKLPIKGAEHMSLLYPVAIRTL", "length": 440, "header": "tr|A0A8C2N163-1|A0A8C2N163_CRIGR Isoform 1 of SH2 domain-containing adapter protein F isoform X3 OS=Cricetulus griseus OX=10029 GN=Shf PE=4 SV=1 CANONICAL=A0A8C2N163-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZN3-1", "url": 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"MAPEKVPENDGYMEPYEAQKMMAEIRGSKETAAQPLPLYDTPYEPEDEGASPEGEGTPWPRESRLPEDDERPPEEYDQPWEWKKERISKAFAAQFEGSEKNCLSPGREEKGRLPPRLSAGNPKSAKPLGMEPSSPLGEWTDPALPLENQVWYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEHKYVLGQNSPPFSSVPEIVHHYASRKLPIKGAEHMSLLYPVAIRTL", "length": 251, "header": "tr|A0A9J7KAH5-1|A0A9J7KAH5_CRIGR Computationally mapped isoform of SH2 domain-containing adapter protein F isoform X5 OS=Cricetulus griseus OX=10029 GN=Shf PE=4 SV=1 CANONICAL=A0A8C2N163-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 127, "start_aa": "Thr", "end_pos": 127, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr127", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N163", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N163" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N163", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N163" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N163", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N163" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N163", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N163" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 340, "end_pos": 435, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 127 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", 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"Protein" ] }, { "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J926", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J926", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J926-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J926-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGGGYYGQGGMSGGGWRGMY", "length": 340, "header": "tr|A0A8C2N1F1-1|A0A8C2N1F1_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein H3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnph3 PE=4 SV=1 CANONICAL=A0A8C2N1F1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N1F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1/entry", "sequence": { "sequence": "MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGGGYYGQGGMSGGGWRGMY", "length": 340, "header": "tr|A0A8C2N1F1-1|A0A8C2N1F1_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein H3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnph3 PE=4 SV=1 CANONICAL=A0A8C2N1F1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J926-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J926/entry", "sequence": { "sequence": "MYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGGGYYGQGGMSGGGWRGMY", "length": 209, "header": "tr|A0A9J7J926-1|A0A9J7J926_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein H3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Hnrnph3 PE=4 SV=1 CANONICAL=A0A8C2N1F1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756529", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756529", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1N8Z4-1", "protein_name": "Heteroous nuclear ribonucleoprotein H3", "gene_name": "HNRNPH3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAFKSNGIEMDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY", "length": 355 }, "evidence": [ { "id": "A0A8C2N1F1", "url": "https://omabrowser.org/oma/group/A0A8C2N1F1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A5K1TZB6-1", "protein_name": "Heteroous nuclear ribonucleoprotein H3", "gene_name": "HNRNPH3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY", "length": 329 }, "evidence": [ { "id": "A0A8C2N1F1", "url": "https://omabrowser.org/oma/group/A0A8C2N1F1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D3YWT1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H3", "gene_name": "Hnrnph3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNSYSGGYGAPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY", "length": 331 }, "evidence": [ { "id": "A0A8C2N1F1", "url": "https://omabrowser.org/oma/group/A0A8C2N1F1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4ABK7-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H3", "gene_name": "Hnrnph3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNSYSGGYGAPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY", "length": 346 }, "evidence": [ { "id": "A0A8C2N1F1", "url": "https://omabrowser.org/oma/group/A0A8C2N1F1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P31942-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H3", "gene_name": "HNRNPH3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY", "length": 346 }, "evidence": [ { "id": "A0A8C2N1F1", "url": "https://omabrowser.org/oma/group/A0A8C2N1F1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VGH5-1", "protein_name": "Glorund, isoform D", "gene_name": "glo", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSNADVQFNYGQQGNGDNFNDDSNQQQDEDDQYNEDGGGKIENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRATGAGGGVGGRPGPYDIRDRGANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPSLMNSGNFGNNQGGNNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFGNFGNNGGGNFGGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSSSGVGNFGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNGSNFGGGNSMGGGGNFGPIGGGRGNDIEYYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMGSRYIELFYDGKTRGLNGGEHGGGNGGGGMGNNGGGNFSRRI", "length": 586 }, "evidence": [ { "id": "A0A8C2N1F1", "url": "https://omabrowser.org/oma/group/A0A8C2N1F1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" } ], "pmid": "" }, { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1F1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N1F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1F1" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 93, "start_aa": "Gly", "end_aa": "Arg", 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N1H5-1", "uniprot_ac": "A0A8C2N1H5", "uniprot_id": "A0A8C2N1H5_CRIGR", "mass": { "chemical_mass": 83165.0, "monoisotopic_mass": 83165.0 }, "refseq": { "ac": "XP_027246594", "name": "amyloid-beta A4 precursor protein-binding family B member 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246594" }, "gene_names": [ { "name": "Apbb2", "type": "recommended", "evidence": [ { "id": "A0A8C2N1H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5" } ] }, { "name": "Apbb2", "type": "synonym", "evidence": [ { "id": "XP_027246594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246594" } ] } ], "protein_names": [ { "name": "Amyloid-beta A4 precursor protein-binding family B member 2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2N1H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5/entry#names_and_taxonomy" } ] }, { "name": "amyloid-beta A4 precursor protein-binding family B member 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027246594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246594" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246594" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Apbb2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5", "locus": {} } ], "crossref": [ { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01272", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01272", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755787", "url": "https://www.ncbi.nlm.nih.gov/gene/100755787", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039576", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039576", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755787", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755787", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N1H5", "url": "https://www.orthodb.org/?gene=A0A8C2N1H5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14058", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14058", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14058:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14058:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246594", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N1H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1I5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1I5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F336", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F336", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F336-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F336-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F358", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F358", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F358-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F358-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F452", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F452", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F452-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F452-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEVLPADSGVDTLAVFMASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETADIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 759, "header": "tr|A0A8C2N1H5-1|A0A8C2N1H5_CRIGR Isoform 1 of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N1H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5/entry", "sequence": { "sequence": "MSEVLPADSGVDTLAVFMASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETADIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 759, "header": "tr|A0A8C2N1H5-1|A0A8C2N1H5_CRIGR Isoform 1 of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N1I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1I5/entry", "sequence": { "sequence": "MSEVLPADSGVDTLAVFMASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETADIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 738, "header": "tr|A0A8C2N1I5-1|A0A8C2N1I5_CRIGR Computationally mapped isoform of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK3/entry", "sequence": { "sequence": "MSEVLPADSGVDTLAVFMASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETDIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 736, "header": "tr|A0A9J7EYK3-1|A0A9J7EYK3_CRIGR Computationally mapped isoform of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X9 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F336-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F336/entry", "sequence": { "sequence": "MSEVLPADSGVDTLAVFMASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETADIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 758, "header": "tr|A0A9J7F336-1|A0A9J7F336_CRIGR Computationally mapped isoform of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F358-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F358/entry", "sequence": { "sequence": "MSEVLPADSGVDTLAVFMASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETDIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 758, "header": "tr|A0A9J7F358-1|A0A9J7F358_CRIGR Computationally mapped isoform of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F452-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F452/entry", "sequence": { "sequence": "MSEVLPADSGVDTLAVFMASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETDIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 737, "header": "tr|A0A9J7F452-1|A0A9J7F452_CRIGR Computationally mapped isoform of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFS3/entry", "sequence": { "sequence": "MASSGTTDVANRNSPATPPNTLNLRSSHNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNISPTAVINITSEKLEVKDLHPPESSGCEILPSQPRRTKSFLNYYADLETSARELGQNLDPCQGVGEEKAQPGPGQAPVVIGNGDLLLQKPNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETADIWSDHSFQTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERPVSIPVDLQGSRKGSLSSVTSSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHADDDDSCSVNSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERTNVSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDTLNSAIENLMTSSSQEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPVDSMTRRVTTNVKRGVLSLIDTLKQKRPVTETP", "length": 742, "header": "tr|A0A9J7KFS3-1|A0A9J7KFS3_CRIGR Computationally mapped isoform of Amyloid-beta A4 precursor protein-binding family B member 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Apbb2 PE=4 SV=1 CANONICAL=A0A8C2N1H5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 344, "start_aa": "Thr", "end_pos": 344, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr344", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 34, "start_aa": "Thr", "end_pos": 34, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr34", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755787", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755787", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1H5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1H5", "url": 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computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252005", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252005" } ] }, { "annotation": "May act as a GTPase-activating protein for Rab family protein(s).", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1H8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H8#function" }, { "database": "UniProtKB", "id": "ARBA00043879", "url": "https://www.uniprot.org/uniprotkb/ARBA00043879#function" }, { "database": "UniProtKB", "id": "A0A9J7FBB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB6#function" }, { "database": "UniProtKB", "id": "A0A9J7GS85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS85#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1H8", "url": 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Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF255", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF255", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252005", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252005", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N1H8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8F0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GS85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GS85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASDGARKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKSTPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMATESLNSEVVMETAHRVLRNHSQRQSQPSQKEMTEPEPQPIAEPPVAPSGDLRLVKSVSESHTPCPSESTSDPVPLQRSQSLPHSATVSLSGTSDPHALGGSALSKREATRLDKFKQLLAGPNTDLEELRKLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYNSRNDEAHQDTYRQIHIDIPRMSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIDQEDVDEVDVSSVPAEVLRNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDERVHRHLDGHEVRYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLFLQNLPTARWNDQDVSLLLAEAYRLKFAFADAPNHYKK", "length": 515, "header": "tr|A0A8C2N1H8-1|A0A8C2N1H8_CRIGR Isoform 1 of TBC1 domain family member 22A isoform X2 OS=Cricetulus griseus OX=10029 GN=Tbc1d22a PE=4 SV=1 CANONICAL=A0A8C2N1H8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N1H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1H8/entry", "sequence": { "sequence": "MASDGARKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKSTPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMATESLNSEVVMETAHRVLRNHSQRQSQPSQKEMTEPEPQPIAEPPVAPSGDLRLVKSVSESHTPCPSESTSDPVPLQRSQSLPHSATVSLSGTSDPHALGGSALSKREATRLDKFKQLLAGPNTDLEELRKLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYNSRNDEAHQDTYRQIHIDIPRMSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIDQEDVDEVDVSSVPAEVLRNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDERVHRHLDGHEVRYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLFLQNLPTARWNDQDVSLLLAEAYRLKFAFADAPNHYKK", "length": 515, "header": "tr|A0A8C2N1H8-1|A0A8C2N1H8_CRIGR Isoform 1 of TBC1 domain family member 22A isoform X2 OS=Cricetulus griseus OX=10029 GN=Tbc1d22a PE=4 SV=1 CANONICAL=A0A8C2N1H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8F0/entry", "sequence": { "sequence": "MASDGARKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKSTPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMATESLNSEVVMETAHRVLRNHSQRQSQPSQKEMTEPEPQPIAEPPVAPSGDLRLVKSVSESHTPCPSESTSDPVPLQRSQSLPHSATVSLSGTSDPHALGGSALSKREATRLDKFKQLLAGPNTDLEELRKLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYNSRNDEAHQDTYRQIHIDIPRMSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIDQEDVDEVDVSSVPAEVLRNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDERVHRHLDGHEVRYLQFAFRWMNNLLMRELPLRCTIRLWDTYQELLLFLQNLPTARWNDQDVSLLLAEAYRLKFAFADAPNHYKK", "length": 483, "header": "tr|A0A9J7F8F0-1|A0A9J7F8F0_CRIGR Computationally mapped isoform of TBC1 domain family member 22A isoform X4 OS=Cricetulus griseus OX=10029 GN=Tbc1d22a PE=4 SV=1 CANONICAL=A0A8C2N1H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB6/entry", "sequence": { "sequence": "MASDGARKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKSTPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMATESLNSEVVMETAHRVLRNHSQRQSQPSQKEMTEPEPQPIAEPPVAPSGDLRLVKSVSESHTPCPSESTSDPVPLQRSQSLPHSATVSLSGTSDPHALGGSALSKREATRLDKFKQLLAGPNTDLEELRKLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYNSRNDEAHQDTYRQIHIDIPRMSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIDQEDVDEVDVSSVPAEVLRNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDERVHRHLDGHEVRYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQVP", "length": 475, "header": "tr|A0A9J7FBB6-1|A0A9J7FBB6_CRIGR Computationally mapped isoform of TBC1 domain family member 22A isoform X5 OS=Cricetulus griseus OX=10029 GN=Tbc1d22a PE=4 SV=1 CANONICAL=A0A8C2N1H8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GS85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS85/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255464", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255464" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem50a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1", "locus": {} } ], "crossref": [ { "id": "100752566", "url": "https://www.ncbi.nlm.nih.gov/gene/100752566", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752566", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752566", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N2P1", "url": "https://www.orthodb.org/?gene=A0A8C2N2P1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13180", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13180", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05255", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05255", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255464", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255464", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N2P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N2P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGFLEGARCSECMDWGEKRNTVASIAAGILFFTGWWIIIDAAVIYPSMEEFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYVAKEKPIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ", "length": 157, "header": "tr|A0A8C2N2P1-1|A0A8C2N2P1_CRIGR Isoform 1 of Transmembrane protein 50A OS=Cricetulus griseus OX=10029 GN=Tmem50a PE=3 SV=1 CANONICAL=A0A8C2N2P1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N2P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1/entry", "sequence": { "sequence": "MSGFLEGARCSECMDWGEKRNTVASIAAGILFFTGWWIIIDAAVIYPSMEEFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYVAKEKPIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ", "length": 157, "header": "tr|A0A8C2N2P1-1|A0A8C2N2P1_CRIGR Isoform 1 of Transmembrane protein 50A OS=Cricetulus griseus OX=10029 GN=Tmem50a PE=3 SV=1 CANONICAL=A0A8C2N2P1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752566", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752566", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2P1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N2Q8-1", "uniprot_ac": "A0A8C2N2Q8", "uniprot_id": "A0A8C2N2Q8_CRIGR", "mass": { "chemical_mass": 58546.0, "monoisotopic_mass": 58546.0 }, "refseq": { "ac": "XP_027274530", "name": "G patch domain-containing protein 2 isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274530" }, "gene_names": [ { "name": "Gpatch2", "type": "recommended", "evidence": [ { "id": "A0A8C2N2Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Q8" } ] }, { "name": "Gpatch2", "type": "synonym", "evidence": [ { "id": "XP_027274530", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274530" } ] } ], "protein_names": [ { "name": "G patch domain-containing protein 2 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_027274530", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274530" }, { "id": "A0A8C2N2Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Q8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274530", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274530" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2Q8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Q8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpatch2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Q8", "locus": {} } ], "crossref": [ { "id": "100760239", "url": "https://www.ncbi.nlm.nih.gov/gene/100760239", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051189", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051189", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760239", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760239", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N2Q8", "url": "https://www.orthodb.org/?gene=A0A8C2N2Q8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14195", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14195", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274530", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274530", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N2Q8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N2Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N5S7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5S7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N5S7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5S7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2I0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2I0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9W2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9W2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFGAAGRPAIGAAAAAGKSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRNVSCPLKRQARKRRGRKRRSYNVHHPWETGHGLSEGSDSSLEEASKDYRENHNNNKKDHSDSDDQMLVAKRRPSSNLNSSVRGKRLLWHETDFAVDNLGNRTLRRRRKVKRMAVDLPQDIANKRTMTQLPEGCRDQEMDNDRAYQYPEFTRNKVKKRKLKVIRQGPKTQEEVVLESEEMSQTNKDKMEYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEKESGGACGIAGVVPWWEKEDPAELDRDLPDPVFESILSGSFPLMSHPGRRGFQARLSCLRGMPSKNIKKSGGAPPSMTSAPGPASNKRMVHFSPDAHHHDHWFSPGARTEHGQHQLLRDNRSERGHKKNCSMKTASRQTSMHLGSLCTGDIKRRRKAAPLPGPTAAGIVGENAQPILESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLGFPLPKSTPTSSAPTSGKPS", "length": 528, "header": "tr|A0A8C2N2Q8-1|A0A8C2N2Q8_CRIGR Isoform 1 of G patch domain-containing protein 2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Gpatch2 PE=4 SV=1 CANONICAL=A0A8C2N2Q8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N2Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Q8/entry", "sequence": { "sequence": "MFGAAGRPAIGAAAAAGKSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRNVSCPLKRQARKRRGRKRRSYNVHHPWETGHGLSEGSDSSLEEASKDYRENHNNNKKDHSDSDDQMLVAKRRPSSNLNSSVRGKRLLWHETDFAVDNLGNRTLRRRRKVKRMAVDLPQDIANKRTMTQLPEGCRDQEMDNDRAYQYPEFTRNKVKKRKLKVIRQGPKTQEEVVLESEEMSQTNKDKMEYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEKESGGACGIAGVVPWWEKEDPAELDRDLPDPVFESILSGSFPLMSHPGRRGFQARLSCLRGMPSKNIKKSGGAPPSMTSAPGPASNKRMVHFSPDAHHHDHWFSPGARTEHGQHQLLRDNRSERGHKKNCSMKTASRQTSMHLGSLCTGDIKRRRKAAPLPGPTAAGIVGENAQPILESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLGFPLPKSTPTSSAPTSGKPS", "length": 528, "header": "tr|A0A8C2N2Q8-1|A0A8C2N2Q8_CRIGR Isoform 1 of G patch domain-containing protein 2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Gpatch2 PE=4 SV=1 CANONICAL=A0A8C2N2Q8-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N5S7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5S7/entry", "sequence": { "sequence": "MFGAAGRPAIGAAAAAGKSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRNVSCPLKRQARKRRGRKRRSYNVHHPWETGHGLSEGSDSSLEEASKDYRENHNNNKKDHSDSDDQMLVAKRRPSSNLNSSVRGKRLLWHETDFAVDNLGNRTLRRRRKVKRMAVDLPQDIANKRTMTQLPEGCRDQEMDNDRAYQYPEFTRNKVKKRKLKVIRQGPKTQEEVVLESEEMSQTNKDKMEYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEKESGGACGIAGVVPWWEKEDPAELDRDLPDPVFESILSGSFPLMSHPGRRGFQARLSCLRGMPSKNIKKSGGAPPSMAANWTSEIPL", "length": 376, "header": "tr|A0A8C2N5S7-1|A0A8C2N5S7_CRIGR Computationally mapped isoform of G patch domain-containing protein 2 isoform X12 OS=Cricetulus griseus OX=10029 GN=Gpatch2 PE=4 SV=1 CANONICAL=A0A8C2N2Q8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2I0/entry", "sequence": { "sequence": 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111 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614175.1) and transcript sequence (IACG01202694.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016832713.1. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2V8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2V8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760309", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760309", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2V8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2V8" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2V8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2V8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of hippo signaling", "id": "GO:0035332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035332", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2V8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2V8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N2V8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2V8" }, { "id": "PF10148", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10148" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Schwannomin interacting protein 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 224, "end_pos": 453, "start_aa": "Gln", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 20, "end_pos": 22 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 275, "end_pos": 277 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295164" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2Y0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klhl30", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0", "locus": {} } ], "crossref": [ { "id": "cd18469", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18469", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772873", "url": "https://www.ncbi.nlm.nih.gov/gene/100772873", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772873", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772873", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WFYSGVC", "url": "https://omabrowser.org/oma/group/WFYSGVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N2Y0", "url": "https://www.orthodb.org/?gene=A0A8C2N2Y0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295164", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N2Y0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N2Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRNLDSLDFHLPSHAQDMLDGLQRLRSLPKLADVTLLVGDQELPCHRSLLALSSPYFHAMFAGDFAESFSARVELRDVEPAAAGQLVDFVYTGRLTITQTNVEALTRTASRLHFPTVQKVCGRYLQQQLDATNCLGICEFGEQQGLLGVAAKAWAFLRENFEAVAQEDEFLQLPRDRLATCLASDLLQVQPEQSRLQALLRWVRHDPQERSAHLPELLSLVHLDAVPRPCVQQLLATEPLIQESEACQEALSQGHRRELPGLPQKMQEVLVVVGGRALEEDEEGGEEPSAHTGNFAFYNTKARQWMALPDFPDYHKWGFSLAALNSDVYVTGGSRGTKTDTWSTTQAWCFPLKEAVWKPVAPMLKARTNHASTALNGEIYAIGGTALDAVEVERYDPYTDSWTPVSPALKYVSNFSAASCQGRLYLVGSSACKYNMLALQCYSPVTDVWSVIASPFLPKYLSSPRCAALNGALYLIGDNTKKVYVYDPGANLWQKVQSQHSLHENGALVSLGDALYVTGGRWQGMDGDYHVEMEAYDTVRDAWARHGSLPRLWLYHGASTIFLDISKWTKPFSPSATQEH", "length": 581, "header": "tr|A0A8C2N2Y0-1|A0A8C2N2Y0_CRIGR Isoform 1 of Kelch-like protein 30 isoform X2 OS=Cricetulus griseus OX=10029 GN=Klhl30 PE=4 SV=1 CANONICAL=A0A8C2N2Y0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N2Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0/entry", "sequence": { "sequence": "MVRNLDSLDFHLPSHAQDMLDGLQRLRSLPKLADVTLLVGDQELPCHRSLLALSSPYFHAMFAGDFAESFSARVELRDVEPAAAGQLVDFVYTGRLTITQTNVEALTRTASRLHFPTVQKVCGRYLQQQLDATNCLGICEFGEQQGLLGVAAKAWAFLRENFEAVAQEDEFLQLPRDRLATCLASDLLQVQPEQSRLQALLRWVRHDPQERSAHLPELLSLVHLDAVPRPCVQQLLATEPLIQESEACQEALSQGHRRELPGLPQKMQEVLVVVGGRALEEDEEGGEEPSAHTGNFAFYNTKARQWMALPDFPDYHKWGFSLAALNSDVYVTGGSRGTKTDTWSTTQAWCFPLKEAVWKPVAPMLKARTNHASTALNGEIYAIGGTALDAVEVERYDPYTDSWTPVSPALKYVSNFSAASCQGRLYLVGSSACKYNMLALQCYSPVTDVWSVIASPFLPKYLSSPRCAALNGALYLIGDNTKKVYVYDPGANLWQKVQSQHSLHENGALVSLGDALYVTGGRWQGMDGDYHVEMEAYDTVRDAWARHGSLPRLWLYHGASTIFLDISKWTKPFSPSATQEH", "length": 581, "header": "tr|A0A8C2N2Y0-1|A0A8C2N2Y0_CRIGR Isoform 1 of Kelch-like protein 30 isoform X2 OS=Cricetulus griseus OX=10029 GN=Klhl30 PE=4 SV=1 CANONICAL=A0A8C2N2Y0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2Y0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N2Y0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772873", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772873", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P4W6-1", "protein_name": "Kelch like family member 30", "gene_name": "KLHL30", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLNVDDFDFCLPSHAQGVLEGLQRLRAHPKLSDVTLLAGGREFPCHRGVLALCSHYFHAMFSGDFAESIAARVELKEVDPGALETLLDFAYTGKVTVNQGNVEGLMRTSSQLHFPTIQQVCSRYLRQQMDATNCLGICEFGESHGCPEVSSKAWSFLQENFEAVSQQEEFLQLSKERLAVYLSNEQLQVQEEQSVAEAVLRWVRYDPGQRAQFLPELLELARLVSLPDHYLQNLLAAEPLVRDSAASQALVARSRATLGATGTVPTPPNAAPPQKLEEVLVVVGGRVLEESEDEEGGLETPAAPRNFAFYNPKTRRWMALPDFPDYNKWGFSLVALNNDVYVTGGSRGSRNDTWSTTQAWRFCPKDGAWTAIASMLRARTNHTSAVLNGEIYVLGGTTVEVVEVERYDPYNQSWAAISPALKYVSNFAAAGCLGKLYLVGSCAVKYNALTLQCYNPVRDAWSVITSPFIPKYLSAPRCATLHGLIYLIGDNTKKVHVYDPEANIWQKVQLLHTLHENGGMVPLGDRLFVTGGHWKGMDGDYRVEMEVYDCAKDRWVREGSLPCLWLFHSSSSIFMDTSKWTEAFPGDQRW", "length": 591 }, "evidence": [ { "id": "A0A8C2N2Y0", "url": "https://omabrowser.org/oma/group/A0A8C2N2Y0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZHA2-1", "protein_name": "Kelch-like family member 30", "gene_name": "Klhl30", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRNVDDLDFHLPSHAQDMLEGLQRLRSLPKLADVTLLVGDQELPCHRSLLALNSPYFHAMFAGDFAESFSARVELRDVEPAAVGQLVDFVYTGRLTITQSNVEALTRSASRLHFPTVQKVCGRYLQQQLDATNCLGICEFGEQQGLLGVAAKAWAFLRENFEAVAQEDEFLQLPRDRLATCLASDLLQVQPEQSRLEALLRWVRHDPQDRAAYLPELLNLVHLDALPRPCVQQLLATEPLIQESEACQEALSQGHSAEPPGLPQKMQEVLVVVGGRALEEDEEGGEEPSPHTGNFAFYNTKARQWMALPDFPDYHKWGFSLATLNSDVYVTGGSRGTKTDTWSTTQAWCFPLKEAVWKPVAPMLKARTNHASTALNGEIYAIGGTALDAVEVERYDPYTDSWAPVRPALKYVSNFSAASCQGRLYLVGSSACKYNMLALQCYSPVTDVWSVIASPFLPKYLSSPRCAALNGALYLIGDNTKKVYVYDPGANLWQKVQSQHSLHENGALVPLGDLLYVTGGRWQGMDGDYHVEMEAYDTVRDAWARHGSLPRLWLYHGASTIFLDISKWTQPFSPTAPREH", "length": 581 }, "evidence": [ { "id": "A0A8C2N2Y0", "url": "https://omabrowser.org/oma/group/A0A8C2N2Y0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "I3LTF2-1", "protein_name": "Kelch like family member 30", "gene_name": "KLHL30", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVRNVDDLDFHLPSHAQDMLDGLQRLRFQPKLADVTLLVGGRELPCHRGLLALSSPYFHAMFAGDFAESFSARVELRDVEPAVVAQLVDFVYTGRLTITQANVEALTRTAARLHFPAVQKVCGRYLQQQLDATNCLGICEFGEQQGLLGVAAKAWAFLRENFEAVAREDEFLQLSQERLATCLASDLLQVQPEQSRLEALLRWVRHDSQARAAHLPELLGLVHLDAVPRPHVQQLLATEPLIRESEACREALSQGHEAALLALPQKLEEVLVVVGGRALEEEEGAEELAPQPGNFAFYDTKAQRWMALPDFPDYHKWGFSLAALNNDVYVTGGSRGTKTDTWSTTQAWCFPLKEAAWRPVAPMRKARTNHASAALNGEIYAIGGTTLDVVEVESYDPYTDTWTPVSPALKYVSNFSAAGCGGRLYLVGSSACKYNALALQCYNPVADAWSVIASPFLPKYLSSPRCAALQGALYLVGDNTKKVYVYDPGANLWQKVQALHSLHENGALVPLGDALYVTGGRWQGMDGDYHVEMEAYDPGRDAWIRHGALPRLWLYHGASAVFLDVSKWTQPFGPAQEP", "length": 578 }, "evidence": [ { "id": "A0A8C2N2Y0", "url": "https://omabrowser.org/oma/group/A0A8C2N2Y0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q0D2K2-1", "protein_name": "Kelch-like protein 30", "gene_name": "KLHL30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVRNVDDLDFHLPSHAQDMLDGLQRLRSQPKLADVTLLVGGRELPCHRGLLALSSPYFHAMFAGDFAESFSARVELRDVEPAVVGQLVDFVYTGRLTITQGNVEALTRTAARLHFPSVQKVCGRYLQQQLDAANCLGICEFGEQQGLLGVAAKAWAFLRENFEAVAREDEFLQLPRERLVTCLAGDLLQVQPEQSRLEALMRWVRHDPQARAAHLPELLSLVHLDAVPRPCVQQLLASEPLIQESEACRAALSQGHDGAPLALQQKLEEVLVVVGGQALEEEEAGEEPTPGLGNFAFYNSKAKRWMALPDFPDYHKWGFSLAALNNNIYVTGGSRGTKTDTWSTTQAWCFPLKEASWKPVAPMLKPRTNHASAALNGEIYVIGGTTLDVVEVESYDPYTDSWTPVSPALKYVSNFSAAGCRGRLYLVGSSACKYNALALQCYNPVTDAWSVIASPFLPKYLSSPRCAALHGELYLIGDNTKKVYVYDPGANLWQKVQSQHSLHENGALVPLGDALYVTGGRWQGMEGDYHVEMEAYDTVRDTWTRHGALPRLWLYHGASTVFLDVSKWTQPSGPTQEH", "length": 578 }, "evidence": [ { "id": "A0A8C2N2Y0", "url": "https://omabrowser.org/oma/group/A0A8C2N2Y0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C3F7-1", "protein_name": "Kelch-like protein 30", "gene_name": "Klhl30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVRNLDDLDFHLPSHAQDMLEGLQRLRSLPKLADVTLLVGDQELPCHRSLLALNSPYFHAMFAGDFTESFLARVELRDVEPAMVGQLVDFVYTGRLTITQANVEALTRSASRLNFPTVQKVCGRYLQQQLDATNCLGICEFGEQQGLLGVAAKAWAFLRENFEAVAQEDEFLQLARDRLATCLASDLLQVQPEQSRLEALLRWVRHDPQDRAAHLPELLSLVHLDAVPRPCVQQLLATEPLIQESEACQEALSQGHSEELPGLPQKMQEVLVVVGGRALEEDEDGGEEPSHHTGNFAFYNTKARQWMALPDFPDYHKWGFSLAALNSDVYVTGGSRGTKTDTWSTTQAWCFPLKEAIWKPVAPMLKARTNHASTALNGEIYAIGGTALDAVEVERYDPYTDSWAPVGPAPKYVSNFSAAGCQGRLYLVGSSACKYNMLALQCYSPVTDAWSVIASPFLPKYLSSPRCAALNGALYLIGDNTKKVYVYDPGANLWQKVQSQHSLHENGALVPLGDLLYVTGGRWQGMDGDYHVEMEAYDTVRDAWARHGSLPRLWLYHGASTIFLDVSKWTQPFIPTAPQEH", "length": 581 }, "evidence": [ { "id": "A0A8C2N2Y0", "url": "https://omabrowser.org/oma/group/A0A8C2N2Y0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 415, "end_pos": 417, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N2Y0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2Y0" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 100, "start_aa": "Ala", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 415, "end_pos": 417 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N307-1", "uniprot_ac": "A0A8C2N307", "uniprot_id": "A0A8C2N307_CRIGR", "mass": { "chemical_mass": 14191.0, "monoisotopic_mass": 14191.0 }, "refseq": { "ac": "XP_003503024", "name": "LIM domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503024" }, "gene_names": [ { "name": "Limd2", "type": "recommended", "evidence": [ { "id": "A0A8C2N307", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307" } ] }, { "name": "Limd2", "type": "synonym", "evidence": [ { "id": "XP_003503024", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503024" } ] } ], "protein_names": [ { "name": "LIM domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "XP_003503024", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503024" }, { "id": "A0A8C2N307", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 120 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613926.1) and transcript sequence (IACG01047550.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003503024.4. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503024" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N307", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Limd2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307", "locus": {} } ], "crossref": [ { "id": "cd09486", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09486", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774186", "url": "https://www.ncbi.nlm.nih.gov/gene/100774186", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774186", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774186", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "APAHEAK", "url": "https://omabrowser.org/oma/group/APAHEAK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N307", "url": "https://www.orthodb.org/?gene=A0A8C2N307", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503024", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N307", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N307-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFQAAGAAQATPSHEAKGSSGSSAVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA", "length": 128, "header": "tr|A0A8C2N307-1|A0A8C2N307_CRIGR Isoform 1 of LIM domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Limd2 PE=4 SV=1 CANONICAL=A0A8C2N307-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N307-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307/entry", "sequence": { "sequence": "MFQAAGAAQATPSHEAKGSSGSSAVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA", "length": 128, "header": "tr|A0A8C2N307-1|A0A8C2N307_CRIGR Isoform 1 of LIM domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Limd2 PE=4 SV=1 CANONICAL=A0A8C2N307-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 11, "start_aa": "Thr", "end_pos": 11, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr11", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N307", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N307", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774186", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774186", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M3AQP1-1", "protein_name": "LIM domain-containing protein 2 isoform X1", "gene_name": "limd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFVLVAAQTKGACESIQQMEGFRRDWRKCSEGSIFEDNRNTSDEKPVQRSKSFSFKTQKETCASCEKTVYPMERLVANNLIFHAACFCCKHCNTKLSLGSYAALQGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWASKDAESIGKTA", "length": 149 }, "evidence": [ { "id": "A0A8C2N307", "url": "https://omabrowser.org/oma/group/A0A8C2N307/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LZA7-1", "protein_name": "LIM domain-containing protein 2", "gene_name": "LIMD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFQAAGAAQATPSHEAKGGGSSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA", "length": 128 }, "evidence": [ { "id": "A0A8C2N307", "url": "https://omabrowser.org/oma/group/A0A8C2N307/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BGB5-1", "protein_name": "LIM domain-containing protein 2", "gene_name": "Limd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQAAGAAQATPSHEAKGSSGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA", "length": 128 }, "evidence": [ { "id": "A0A8C2N307", "url": "https://omabrowser.org/oma/group/A0A8C2N307/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BT23-1", "protein_name": "LIM domain-containing protein 2", "gene_name": "LIMD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFQAAGAAQATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA", "length": 127 }, "evidence": [ { "id": "A0A8C2N307", "url": "https://omabrowser.org/oma/group/A0A8C2N307/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N307", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N307" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N344-1", "uniprot_ac": "A0A8C2N344", "uniprot_id": "A0A8C2N344_CRIGR", "mass": { "chemical_mass": 56657.0, "monoisotopic_mass": 56657.0 }, "refseq": { "ac": "XP_027242693", "name": "rho guanine nucleotide exchange factor 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242693" }, "gene_names": [ { "name": "Arhgef4", "type": "recommended", "evidence": [ { "id": "A0A8C2N344", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344" } ] }, { "name": "Arhgef4", "type": "synonym", "evidence": [ { "id": "XP_027242693", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242693" } ] } ], "protein_names": [ { "name": "Rho guanine nucleotide exchange factor 4 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2N344", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344/entry#names_and_taxonomy" } ] }, { "name": "rho guanine nucleotide exchange factor 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027242693", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242693" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242693", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242693" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N344", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgef4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774841", "url": "https://www.ncbi.nlm.nih.gov/gene/100774841", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": 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factor 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arhgef4 PE=4 SV=1 CANONICAL=A0A8C2N344-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N344-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344/entry", "sequence": { "sequence": "MDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADNYEAPRAGAGETEDSIPEAQSCKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKREDMFSEEQLRTIFGNIEDIYRCQKAFVKALEQKFNTERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDGKDRDLHVSVKNAFRLYCGATGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITELQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPPLPASRPQQQVLVLAEPRRKPSNFWHSISRLAPFRK", "length": 484, "header": "tr|A0A8C2N344-1|A0A8C2N344_CRIGR Isoform 1 of Rho guanine nucleotide exchange factor 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arhgef4 PE=4 SV=1 CANONICAL=A0A8C2N344-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFR8/entry", "sequence": { "sequence": "MDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADNYEAPRAGAGETEDSIPEAQSCKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKREDMFSEEQLRTIFGNIEDIYRCQKAFVKALEQKFNTERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDGKDRDLHVSVKNAFRLYCGATGDSHLLCARKPEQKQRWLKAFAREREQASPSLSCRGSRPC", "length": 414, "header": "tr|A0A9J7KFR8-1|A0A9J7KFR8_CRIGR Computationally mapped isoform of Rho guanine nucleotide exchange factor 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgef4 PE=4 SV=1 CANONICAL=A0A8C2N344-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N344", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774841", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774841", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q7TNR9-1", "protein_name": "Rho guanine nucleotide exchange factor 4", "gene_name": "Arhgef4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDYEAPRAGAREADDSGPEAQSCKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKREDMFSEEQLRTIFGNIEDIYRCQKAFVKALEQKFNTERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDGKDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITELQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWHSISRLAPFRK", "length": 484 }, "evidence": [ { "id": "A0A8C2N344", "url": "https://omabrowser.org/oma/group/A0A8C2N344/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N344", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N344", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N344", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N344" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N344", 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N348-1", "uniprot_ac": "A0A8C2N348", "uniprot_id": "A0A8C2N348_CRIGR", "mass": { "chemical_mass": 32968.0, "monoisotopic_mass": 32968.0 }, "refseq": { "ac": "XP_027269624", "name": "protein NipSnap homolog 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269624" }, "gene_names": [ { "name": "Nipsnap2", "type": "recommended", "evidence": [ { "id": "A0A8C2N348", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N348" } ] }, { "name": "Nipsnap2", "type": "synonym", "evidence": [ { "id": "XP_027269624", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269624" } ] } ], "protein_names": [ { "name": "Protein NipSnap homolog 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2N348", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N348/entry#names_and_taxonomy" } ] }, { "name": "protein NipSnap homolog 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027269624", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269624" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269624", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269624" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N348", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N348" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nipsnap2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N348", "locus": {} } ], "crossref": [ { "id": "100756369", "url": "https://www.ncbi.nlm.nih.gov/gene/100756369", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051557", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051557", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756369", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756369", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N348", "url": "https://www.orthodb.org/?gene=A0A8C2N348", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21017:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21017:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07978", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07978", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269624", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269624", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N348", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N348", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N348-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N348-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARVLLARGGLLRPAAPGSFLPGLRRVTSSSHRAREDSWLKSLFVRKVDPRKDAHSNLLAKKETSSLYKLQFHNVKPECLDAYNKICQEVLPKIHEGKQYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLKENQEFVNFRKARSDMLLSRRNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDNNEAVGGFFSQIGQLYMVHHLWAYKDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ", "length": 281, "header": "tr|A0A8C2N348-1|A0A8C2N348_CRIGR Isoform 1 of Protein NipSnap homolog 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nipsnap2 PE=3 SV=1 CANONICAL=A0A8C2N348-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N348-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N348/entry", "sequence": { "sequence": "MAARVLLARGGLLRPAAPGSFLPGLRRVTSSSHRAREDSWLKSLFVRKVDPRKDAHSNLLAKKETSSLYKLQFHNVKPECLDAYNKICQEVLPKIHEGKQYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLKENQEFVNFRKARSDMLLSRRNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDNNEAVGGFFSQIGQLYMVHHLWAYKDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ", "length": 281, "header": "tr|A0A8C2N348-1|A0A8C2N348_CRIGR Isoform 1 of Protein NipSnap homolog 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nipsnap2 PE=3 SV=1 CANONICAL=A0A8C2N348-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614067.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504480" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3B8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3B8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Phtf2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3B8", "locus": {} } ], "crossref": [ { "id": "100758475", "url": "https://www.ncbi.nlm.nih.gov/gene/100758475", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758475", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758475", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IPTFCRL", "url": "https://omabrowser.org/oma/group/IPTFCRL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N3B8", "url": "https://www.orthodb.org/?gene=A0A8C2N3B8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F7L1", "url": "https://www.orthodb.org/?gene=A0A9J7F7L1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12680", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12680", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12680:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12680:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12129", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12129", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504480", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N3B8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N3B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3B8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4N0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4N0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7L1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2M4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGAGTSYSVGTVFRDLWNAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGPQDLEPQCETIRPEDIAWATPMPRNVPAKDAQRKITNVSDEVSSEDDPETGYSLRCHGDRTSESSLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECHSSCTSETDVGNPQVNPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVLLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 747, "header": "tr|A0A8C2N3B8-1|A0A8C2N3B8_CRIGR Isoform 1 of Homeodomain transcription factor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Phtf2 PE=4 SV=1 CANONICAL=A0A8C2N3B8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N3B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3B8/entry", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGAGTSYSVGTVFRDLWNAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGPQDLEPQCETIRPEDIAWATPMPRNVPAKDAQRKITNVSDEVSSEDDPETGYSLRCHGDRTSESSLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECHSSCTSETDVGNPQVNPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVLLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 747, "header": "tr|A0A8C2N3B8-1|A0A8C2N3B8_CRIGR Isoform 1 of Homeodomain transcription factor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Phtf2 PE=4 SV=1 CANONICAL=A0A8C2N3B8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4N0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N0/entry", "sequence": { "sequence": "MADAALGDCALPDCFNKNTQTSSKHRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGAGTSYSVGTVFRDLWNAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGPQDLEPQCETIRPEDIAWATPMPRNVPAKDAQRKITNVSDEVSSEDDPETGYSLRCHGDRTSESSLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECHSSCTSETDVGNPQVNPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVLLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 607, "header": "tr|A0A9J7F4N0-1|A0A9J7F4N0_CRIGR Computationally mapped isoform of Homeodomain transcription factor 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Phtf2 PE=4 SV=1 CANONICAL=A0A8C2N3B8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7L1/entry", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGAGTSYSVGTVFRDLWNAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGPQDLEPQCETIRPEDIAWATPMPRNVPAKDAQRKITNVSDEVSSEDDPETGYSLRCHGDRTSESSLRNRKPHHYKKHYANEFQTGF", "length": 340, "header": "tr|A0A9J7F7L1-1|A0A9J7F7L1_CRIGR Computationally mapped isoform of Homeodomain transcription factor 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Phtf2 PE=4 SV=1 CANONICAL=A0A8C2N3B8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M4/entry", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGAGTSYSVGTVFRDLWNAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGPQDLEPQCETIRPEDIAWATPMPRNVPAKDAQRKITNVSDEVSSEDDPETGYSLRCHGDRTSESSLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECHSSCTSETDVGNPQVNPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQELMP", "length": 619, "header": "tr|A0A9J7K2M4-1|A0A9J7K2M4_CRIGR Computationally mapped isoform of Homeodomain transcription factor 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Phtf2 PE=4 SV=1 CANONICAL=A0A8C2N3B8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3B8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3B8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3B8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3B8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758475", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758475", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M7Q4-1", "protein_name": "Putative homeodomain transcription factor 2", "gene_name": "PHTF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVTEPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYSVGAVFRDLWHAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGIQSHEPQCETLQPEEATWNTGTLRNIPSKVNDTQRTVTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYVIAFGSNEDVIVLSMVIISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 749 }, "evidence": [ { "id": "A0A8C2N3B8", "url": "https://omabrowser.org/oma/group/A0A8C2N3B8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A4X1SFB9-1", "protein_name": "Putative homeodomain transcription factor 2", "gene_name": "PHTF2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 751 }, "evidence": [ { "id": "A0A8C2N3B8", "url": "https://omabrowser.org/oma/group/A0A8C2N3B8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0ABK0L440-1", "protein_name": "Putative homeodomain transcription factor 2", "gene_name": "Phtf2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTALTRKGIVRVVFFPFFFRWWLQVTSKVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPVWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGTVQSPGAGAPYSVGSVFRDLWHAAFLLSGSKKTKNSIDKSTETDNGYVSLDGKRTVKSSEDGAQDHEPQCETIRPEDTAWATRTPRSVPAKDAQRKITNVSDEVSSEEGPETGYPSRCHGDRTSESGLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVGNPQINPCGKKEYRDDPFHQTHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQIFGNAVSLILGFTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDFMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFVCCAQLLHVHEIFLDCHYNWELAIWCISLSLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 751 }, "evidence": [ { "id": "A0A8C2N3B8", "url": "https://omabrowser.org/oma/group/A0A8C2N3B8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NXV0-1", "protein_name": "Putative homeodomain transcription factor 2", "gene_name": "PHTF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTGHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFYRWWLQVTSRVIFFWLLVLYLLQVAAVVLFCTAQSPHNIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPPSTGVKRRRKLRKAAHLEVHREGDGSSTTDNTQEGTVQSYGTSTSYSIGAVFRDIWHAAFFLSGSKKAKNSIDKSTETDNGYVSLEGKKTGKSSEECAQAQERLCEVIKPEESGWSTTTMRETFSTPIHHKETHRTVTNLSDEVSSEEGPETGYSLRRNVERTSSDGTLRNRKSHHYKKHYPLEDTPKSGTSCSSRCSSSRQDSESTRPESETEDVWEDLLHCAECHSSCTSETDVESPQMNPCVKKEYRDDPFHQSHLPWIHSLNPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSYIPGIGYQIFGNIISLILGLMPFVFRLSQAKDLEQLAAHSATELCITAFGSNGDILVLSMVVISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHMHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 752 }, "evidence": [ { "id": "A0A8C2N3B8", "url": "https://omabrowser.org/oma/group/A0A8C2N3B8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8CB19-1", "protein_name": "Protein PHTF2", "gene_name": "Phtf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFSRWWLQVTSRVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLGTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSYGAGAPYSVGTVFRDLWLAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKRTVKSSEDGAQYHELQCETVGPEDAAWATRTPRSVPAKDTQRKITNVSDEVSSEEGPETGYPLRGHVDRTSESGLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEGVLWEDLLHCAECRSSCTSETDVGNPQINPCGKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQVFGNAISLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHCNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 747 }, "evidence": [ { "id": "A0A8C2N3B8", "url": "https://omabrowser.org/oma/group/A0A8C2N3B8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N3S3-1", "protein_name": "Protein PHTF2", "gene_name": "PHTF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASKVTDAIVWYQKKEFLSVATTAPGPQQVLPGYCQCSLKDQGLFIQCLIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSTSSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQNHGTSTSHSVGTVFRDLWHAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGIQNHEPQCETIRPEETAWNTGTLRNGPSKDTQRTITNVSDEVSSEEGPETGYSLRRHVDRTSEGVLRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESARPESETEDVLWEDLLHCAECHSSCTSETDVENHQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVIVLSMVIISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 785 }, "evidence": [ { "id": "A0A8C2N3B8", "url": "https://omabrowser.org/oma/group/A0A8C2N3B8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { 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analysis. This record is derived from a genomic sequence (NW_003616302.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250532", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250532" } ] }, { "annotation": "Binds specifically to the 3'-terminal U-tract of U6 snRNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4M1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4M1#function" }, { "database": "UniProtKB", "id": "RU365049", "url": "https://www.uniprot.org/uniprotkb/RU365049#function" }, { "database": "UniProtKB", "id": "A0A9J7KB42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB42#function" } ] }, { "annotation": "Plays a role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4M1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4M1#function" }, { "database": "UniProtKB", "id": "ARBA00056431", "url": "https://www.uniprot.org/uniprotkb/ARBA00056431#function" }, { "database": "UniProtKB", "id": "A0A9J7KB42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB42#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lsm4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5", "locus": {} } ], "crossref": [ { "id": "A0A9J7F4V5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F4V5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01723", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01723", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769464", "url": "https://www.ncbi.nlm.nih.gov/gene/100769464", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027141", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027141", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034101", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034101", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769464", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769464", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23338", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23338", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250532", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250532", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M4M1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M4M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSGLVACRGAPDQAVFTAFPRSLRAAEDHQPVSDTGPSSPPAAVRAQAREPALTTFAHEVAPHQTQRRTAAHAPFPIIHLERARGAPRPFASLRPHFTAAPESHGANPARRAVALRRHRPPPRQLGERPSSPSLIGRSLCQSPQASGAQRAAGGSARGCAAAEVSPEEDASLVAAQDGAESPHAGGAEEWGDIQWAPGEL", "length": 201, "header": "tr|A0A9J7F4V5-1|A0A9J7F4V5_CRIGR Isoform 1 of U6 snRNA-associated Sm-like protein LSm4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lsm4 PE=4 SV=1 CANONICAL=A0A9J7F4V5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M4M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4M1/entry", "sequence": { "sequence": "MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVREEAAKGRGRGGPQQQKQQKGRGMGGAGRGVFGGRGRGGIPGAGRGQTEKKPGRQAGKQ", "length": 138, "header": "tr|A0A8C2M4M1-1|A0A9J7F4V5_CRIGR Computationally mapped isoform of U6 snRNA-associated Sm-like protein LSm4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lsm4 PE=4 SV=1 CANONICAL=A0A9J7F4V5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5/entry", "sequence": { "sequence": "MGSGLVACRGAPDQAVFTAFPRSLRAAEDHQPVSDTGPSSPPAAVRAQAREPALTTFAHEVAPHQTQRRTAAHAPFPIIHLERARGAPRPFASLRPHFTAAPESHGANPARRAVALRRHRPPPRQLGERPSSPSLIGRSLCQSPQASGAQRAAGGSARGCAAAEVSPEEDASLVAAQDGAESPHAGGAEEWGDIQWAPGEL", "length": 201, "header": "tr|A0A9J7F4V5-1|A0A9J7F4V5_CRIGR Isoform 1 of U6 snRNA-associated Sm-like protein LSm4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lsm4 PE=4 SV=1 CANONICAL=A0A9J7F4V5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KB42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB42/entry", "sequence": { "sequence": "MESRFFLGRSACPARKEGSAFLWFTLSSRALGLLQTSHGGEEKGGSPSQFLMLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVREEAAKGRGRGGPQQQKQQKGRGMGGAGRGVFGGRGRGGIPGAGRGQTEKKPGRQAGKQ", "length": 189, "header": "tr|A0A9J7KB42-1|A0A9J7F4V5_CRIGR Computationally mapped isoform of U6 snRNA-associated Sm-like protein LSm4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lsm4 PE=4 SV=1 CANONICAL=A0A9J7F4V5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4M1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4M1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4M1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4M1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769464", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769464", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" }, { "name": "PH domain binding", "id": "GO:0042731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042731", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" }, { "name": "Lsm2-8 complex", "id": "GO:0120115", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120115", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" }, { "name": "U4/U6 x U5 tri-snRNP complex", "id": "GO:0046540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046540", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "nuclear-transcribed mRNA catabolic process", "id": "GO:0000956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000956", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4V5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F484-1", "uniprot_ac": "A0A9J7F484", "uniprot_id": "A0A9J7F484_CRIGR", "mass": { "chemical_mass": 57080.0, "monoisotopic_mass": 57080.0 }, "refseq": { "ac": "XP_027250047", "name": "protein arginine N-methyltransferase 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250047" }, "gene_names": [ { "name": "Prmt2", "type": "recommended", "evidence": [ { "id": "A0A9J7F484", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ] }, { "name": "Prmt2", "type": "synonym", "evidence": [ { "id": "XP_027250047", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250047" } ] } ], "protein_names": [ { "name": "type I protein arginine methyltransferase", "type": "recommended", "evidence": [ { "id": "A0A9J7F484", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.319", "type": "synonym", "evidence": [ { "id": "A0A9J7F484", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484/entry#names_and_taxonomy" } ] }, { "name": "protein arginine N-methyltransferase 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027250047", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250047" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250047" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F484", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prmt2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484", "locus": {} } ], "crossref": [ { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11806", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11806", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752416", "url": "https://www.ncbi.nlm.nih.gov/gene/100752416", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025799", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025799", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752416", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752416", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NSEPTHW", "url": "https://omabrowser.org/oma/group/NSEPTHW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F3D8", "url": "https://www.orthodb.org/?gene=A0A9J7F3D8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F484", "url": "https://www.orthodb.org/?gene=A0A9J7F484", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H8X4", "url": "https://www.orthodb.org/?gene=G3H8X4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11006:SF92", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11006:SF92", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05175", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05175", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22528", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22528", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250047", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "48096", "url": "https://www.rhea-db.org/rhea/48096", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F3D8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3D8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3D8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3D8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F484", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F484-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H8X4", "url": "https://www.uniprot.org/uniprotkb/G3H8X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H8X4-1", "url": "https://www.uniprot.org/uniprotkb/G3H8X4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METPGDCPGNESQVIPVLEEDPVDYGCEMQLLQDGAQLQLQLQPEEFVAIADYTATDETQLSFLRGEKIVILRQTTADWWWGERAGCCGYIPANHLGKQVEEYDPEDTWQDEEYFDSYGTLKLHLEMLADQPRTTKYHNVILQNKESLKDKVILDVGCGTGIISLFCAHHARPKAVYAVEASEMAQHTGQLVLQNGFADTITVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDTWLKEDGVIWPTTAALHLVPCSAEKDYHSKVLFWDNAYEFDLSALKSLAIKEFFSKPKSNHILKPEDCLSEPCTILQLDMRTVQISDLEHHTLEADLVYDGRPSPSPHRRRGHRFRRFTKKSGVEKAHVCLSELVCLIYARSYISKSWRESLSNLEVTVKHCLGVMAMVCILWKKRHLATSCDIHKHLSHAVPFPPSRRHRPLTDKPLGSPPSVVPLVGCVYRCSSRGAYRLPAAGCQLPVFPAGSSRRFLRHTFQPVRL", "length": 503, "header": "tr|A0A9J7F484-1|A0A9J7F484_CRIGR Isoform 1 of type I protein arginine methyltransferase OS=Cricetulus griseus OX=10029 GN=Prmt2 PE=4 SV=1 CANONICAL=A0A9J7F484-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F3D8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3D8/entry", "sequence": { "sequence": "METPGDCPGNESQVIPVLEEDPVDYGCEMQLLQDGAQLQLQLQPEEFVAIADYTATDETQLSFLRGEKIVILRQTTADWWWGERAGCCGYIPANHLGKQVEEYDPEDTWQDEEYFDSYGTLKLHLEMLADQPRTTKYHNVILQNKESLKDKVILDVGCGTGIISLFCAHHARPKAVYAVEASEMAQHTGQLVLQNGFADTITVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDTWLKEDGVIWPTTAALHLVPCSAEKDYHSKVLFWDNAYEFDLSALKSLAIKEFFSKPKSNHILKPEDCLSEPCTILQLDMRTVQISDLEAGEKVFPIWR", "length": 342, "header": "tr|A0A9J7F3D8-1|A0A9J7F3D8_CRIGR Computationally mapped isoform of type I protein arginine methyltransferase OS=Cricetulus griseus OX=10029 GN=Prmt2 PE=4 SV=1 CANONICAL=A0A9J7F484-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F484-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484/entry", "sequence": { "sequence": "METPGDCPGNESQVIPVLEEDPVDYGCEMQLLQDGAQLQLQLQPEEFVAIADYTATDETQLSFLRGEKIVILRQTTADWWWGERAGCCGYIPANHLGKQVEEYDPEDTWQDEEYFDSYGTLKLHLEMLADQPRTTKYHNVILQNKESLKDKVILDVGCGTGIISLFCAHHARPKAVYAVEASEMAQHTGQLVLQNGFADTITVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDTWLKEDGVIWPTTAALHLVPCSAEKDYHSKVLFWDNAYEFDLSALKSLAIKEFFSKPKSNHILKPEDCLSEPCTILQLDMRTVQISDLEHHTLEADLVYDGRPSPSPHRRRGHRFRRFTKKSGVEKAHVCLSELVCLIYARSYISKSWRESLSNLEVTVKHCLGVMAMVCILWKKRHLATSCDIHKHLSHAVPFPPSRRHRPLTDKPLGSPPSVVPLVGCVYRCSSRGAYRLPAAGCQLPVFPAGSSRRFLRHTFQPVRL", "length": 503, "header": "tr|A0A9J7F484-1|A0A9J7F484_CRIGR Isoform 1 of type I protein arginine methyltransferase OS=Cricetulus griseus OX=10029 GN=Prmt2 PE=4 SV=1 CANONICAL=A0A9J7F484-1" }, "locus": {} }, { "isoform_ac": "G3H8X4-1", "url": "https://www.uniprot.org/uniprotkb/G3H8X4/entry", "sequence": { "sequence": "METPGDCPGNESQVIPVLEEDPVDYGCEMQLLQDGAQLQLQLQPEEFVAIADYTATDETQLSFLRGEKIVILRQTTADWWWGERAGCCGYIPANHLGKQVEEYDPEDTWQDEEYFDSYGTLKLHLEMLADQPRTTKYHNVILQNKESLKDKVILDVGCGTGIISLFCAHHARPKAVYAVEASEMAQHTGQLVLQNGFADTITVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDTWLKEDGVIWPTTAALHLVPCSAEKDYHSKVLFWDNAYEFDLSALKSLAIKEFFSKPKSNHILKPEDCLSEPCTILQLDMRTVQISDLETMRGELRFDIQKAGTLHGFTAWFSVHFQSLEEGQPQQVLSTGPLHPTTHWKQTLFMMDDPVPVHTGDVVTGSVVLQRNPVWRRHMSVSLSWSVSSTLDPTSQRAGEKVFPIWR", "length": 445, "header": "tr|G3H8X4-1|A0A9J7F484_CRIGR Computationally mapped isoform of type I protein arginine methyltransferase OS=Cricetulus griseus OX=10029 GN=Prmt2 PE=4 SV=1 CANONICAL=A0A9J7F484-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H8X4", "url": "https://www.uniprot.org/uniprotkb/G3H8X4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H8X4", "url": "https://www.uniprot.org/uniprotkb/G3H8X4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752416", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752416", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1QDD1-1", "protein_name": "Protein arginine N-methyltransferase 2", "gene_name": "prmt2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIESESRDCNEGEEYVGLVDFVAEGDEQLSFSVGDKLLVHDRSSDVWWWAEMQGRFGYVPSSYLHQRTEDMEDAWQDDEYFGNYGTLRLHLEMLSDKPRTETYRQVILSNSAALREKVVLDLGCGTGVISLFCALLAKPAGVYAVEASSMAEHTEELVKQNGCDGVVTVFQERAENLTLPTKVDVLVSEWMGNCLLFEYMLESVLLARDRWLKKGGMMWPSSACLTIVPCQAFSDYRQKVEFWENPYGLNFSYLQSLAQKEFLSKPKFSHHLQPEDCLSTPADVITLDMVTIQVSDLERLKGEFTFTVEKSGMFHGFTVWFSAHFQSLEDGPSIELNTGPYSEITHWKQTLFMLDAPVSVEEGDIIAGSIRLQRNPIWRRHLSITFLWNINSTEVSTVKTKCFPMWR", "length": 407 }, "evidence": [ { "id": "A0A9J7F484", "url": "https://omabrowser.org/oma/group/A0A9J7F484/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P55345-1", "protein_name": "Protein arginine N-methyltransferase 2", "gene_name": "PRMT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATSGDCPRSESQGEEPAECSEAGLLQEGVQPEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHVDEYDPEDTWQDEEYFGSYGTLKLHLEMLADQPRTTKYHSVILQNKESLTDKVILDVGCGTGIISLFCAHYARPRAVYAVEASEMAQHTGQLVLQNGFADIITVYQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEDGVIWPTMAALHLVPCSADKDYRSKVLFWDNAYEFNLSALKSLAVKEFFSKPKYNHILKPEDCLSEPCTILQLDMRTVQISDLETLRGELRFDIRKAGTLHGFTAWFSVHFQSLQEGQPPQVLSTGPFHPTTHWKQTLFMMDDPVPVHTGDVVTGSVVLQRNPVWRRHMSVALSWAVTSRQDPTSQKVGEKVFPIWR", "length": 433 }, "evidence": [ { "id": "A0A9J7F484", "url": "https://omabrowser.org/oma/group/A0A9J7F484/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6AYB9-1", "protein_name": "Protein arginine N-methyltransferase 2", "gene_name": "Prmt2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAPAEDPSHESQVTPAPVRKSHGLTIVRRRSASSQEEDPVDYGCEMQLLQDGAQLQLQLQPEEFVAIADYTATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHLGKQVEEYDPEDTWQDEEYFDSYGTLKLHLEMLADQPRTTKYHSVILQNKESLKDKVILDVGCGTGIISLFCAHHARPKAVYAVEASDMAQHTGQLVLQNGFADTITVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEDGIIWPTTAALHLVPCSAEKDYHSKVLFWDNAYEFNLSALKSLAIKEFFSRPKSNHILKPEDCLSEPCTILQLDMRTVQVSDLETMRGELRFDIQKAGTLHGFTAWFSVHFQSLEEGQPQQVLSTGPLHPTTHWKQTLFMMDDPVPVHTGDVVTGSVVLQRNPVWRRHMSVCLSWVVTSAVDPTSQRAGEKVFPIWR", "length": 463 }, "evidence": [ { "id": "A0A9J7F484", "url": "https://omabrowser.org/oma/group/A0A9J7F484/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9MAT5-1", "protein_name": "Protein arginine N-methyltransferase PRMT10", "gene_name": "PRMT10", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MRSSQNGGAMGGRAAGTGGGGPSAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFIE", "length": 383 }, "evidence": [ { "id": "A0A9J7F484", "url": "https://omabrowser.org/oma/group/A0A9J7F484/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F484", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F484", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-arginine omega-N asymmetric methyltransferase activity", "id": "GO:0035242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035242", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F484", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ], "pmid": "" }, { "name": "histone methyltransferase activity", "id": "GO:0042054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042054", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F484", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F484", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "48096", "name": "", "equation": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A8C2MIT8-1", "A0A9J7F484-1", "A0A8C2LPN7-1", "A0A8C2MYC8-1", "A0A8C2QFL4-1", "A0A9J7H3T3-1" ], "evidence": [ { "id": "48096", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/48096" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A8C2LPN7", "gene_name": "Prmt8", "activity": [ { "ec_number": "2.1.1.319", "activity": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+).", "evidence": [ { "id": "A0A8C2LPN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPN7" } ] }, { "ec_number": "2.1.1.319", "activity": "", "evidence": [ { "id": "A0A8C2LPN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPN7" } ] } ] }, { "uniprot_ac": "A0A8C2MIT8", "gene_name": "Prmt1", "activity": [ { "ec_number": "2.1.1.319", "activity": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+).", "evidence": [ { "id": "A0A8C2MIT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIT8" } ] }, { "ec_number": "2.1.1.319", "activity": "", "evidence": [ { "id": "A0A8C2MIT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIT8" } ] } ] }, { "uniprot_ac": "A0A8C2MYC8", "gene_name": "Carm1", "activity": [ { "ec_number": "2.1.1.319", "activity": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+).", "evidence": [ { "id": "A0A8C2MYC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC8" } ] }, { "ec_number": "2.1.1.319", "activity": "", "evidence": [ { "id": "A0A8C2MYC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYC8" } ] } ] }, { "uniprot_ac": "A0A8C2QFL4", "gene_name": "Prmt3", "activity": [ { "ec_number": "2.1.1.319", "activity": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+).", "evidence": [ { "id": "A0A8C2QFL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFL4" } ] }, { "ec_number": "2.1.1.319", "activity": "", "evidence": [ { "id": "A0A8C2QFL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFL4" } ] } ] }, { "uniprot_ac": "A0A9J7F484", "gene_name": "Prmt2", "activity": [ { "ec_number": "2.1.1.319", "activity": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+).", "evidence": [ { "id": "A0A9J7F484", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ] }, { "ec_number": "2.1.1.319", "activity": "", "evidence": [ { "id": "A0A9J7F484", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" } ] } ] }, { "uniprot_ac": "A0A9J7H3T3", "gene_name": "Mettl23", "activity": [ { "ec_number": "2.1.1.319", "activity": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+).", "evidence": [ { "id": "A0A9J7H3T3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3T3" } ] }, { "ec_number": "2.1.1.319", "activity": "", "evidence": [ { "id": "A0A9J7H3T3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3T3" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F484", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F484" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 101, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "2.1.1.319", "ec_name": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+).", "evidence": [ { "id": "2.1.1.319", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:2.1.1.319" }, { "id": "2.1.1.319", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=2.1.1.319" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EYI5-1", "uniprot_ac": "A0A9J7EYI5", "uniprot_id": "A0A9J7EYI5_CRIGR", "mass": { "chemical_mass": 66180.0, "monoisotopic_mass": 66180.0 }, "refseq": { "ac": "XP_027245746", "name": "suppressor of tumorigenicity 7 protein isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245746" }, "gene_names": [ { "name": "St7", "type": "recommended", "evidence": [ { "id": "A0A9J7EYI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5" } ] }, { "name": "St7", "type": "synonym", "evidence": [ { "id": "XP_027245746", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245746" } ] } ], "protein_names": [ { "name": "Suppressor of tumorigenicity 7 protein isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7EYI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5/entry#names_and_taxonomy" } ] }, { "name": "suppressor of tumorigenicity 7 protein isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027245746", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245746" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245746", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245746" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "St7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5", "locus": {} } ], "crossref": [ { "id": "A0A9J7EYI5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EYI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11557", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11557", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752218", "url": "https://www.ncbi.nlm.nih.gov/gene/100752218", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007311", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007311", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752218", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752218", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYI5", "url": "https://www.orthodb.org/?gene=A0A9J7EYI5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F2M1", "url": "https://www.orthodb.org/?gene=A0A9J7F2M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H9J1", "url": "https://www.orthodb.org/?gene=G3H9J1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12745", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12745", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12745:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12745:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027245746", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245746", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MHV7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MHV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F228", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F228", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F228-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F228-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9Q2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2S6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9J1", "url": "https://www.uniprot.org/uniprotkb/G3H9J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9J1-1", "url": "https://www.uniprot.org/uniprotkb/G3H9J1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEAAAAGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 578, "header": "tr|A0A9J7EYI5-1|A0A9J7EYI5_CRIGR Isoform 1 of Suppressor of tumorigenicity 7 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MHV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MHV7/entry", "sequence": { "sequence": "MAEAAAAGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINECATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 555, "header": "tr|A0A8C2MHV7-1|A0A9J7EYI5_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5/entry", "sequence": { "sequence": "MAEAAAAGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 578, "header": "tr|A0A9J7EYI5-1|A0A9J7EYI5_CRIGR Isoform 1 of Suppressor of tumorigenicity 7 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F228-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F228/entry", "sequence": { "sequence": "MAEAAAAGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKSPVPTATSFLPTQRLQLGRAGPGLSQLPLWCLPAKHSSGVSPGCEILTRGCISAGAEHSRDECSRGHSQSCGI", "length": 458, "header": "tr|A0A9J7F228-1|A0A9J7F228_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein isoform X9 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2M1/entry", "sequence": { "sequence": "MFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 525, "header": "tr|A0A9J7F2M1-1|A0A9J7F2M1_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9Q2/entry", "sequence": { "sequence": "MAEAAAAGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLRINDNLSTECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 497, "header": "tr|A0A9J7H9Q2-1|A0A9J7H9Q2_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein isoform X7 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2S6/entry", "sequence": { "sequence": "MIVDPSEHVSEHIDTEVLRGPDRHFLTNIRTYFECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 479, "header": "tr|A0A9J7K2S6-1|A0A9J7K2S6_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein isoform X8 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAJ6/entry", "sequence": { "sequence": "MMGSLWFLSSHCFVQANQNCFQCFSETANDQEAVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 560, "header": "tr|A0A9J7KAJ6-1|A0A9J7EYI5_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} }, { "isoform_ac": "G3H9J1-1", "url": "https://www.uniprot.org/uniprotkb/G3H9J1/entry", "sequence": { "sequence": "MFGTESSLSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI", "length": 534, "header": "tr|G3H9J1-1|A0A9J7EYI5_CRIGR Computationally mapped isoform of Suppressor of tumorigenicity 7 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=St7 PE=3 SV=1 CANONICAL=A0A9J7EYI5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H9J1", "url": "https://www.uniprot.org/uniprotkb/G3H9J1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H9J1", "url": "https://www.uniprot.org/uniprotkb/G3H9J1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752218", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752218", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 112, "end_pos": 114 }, { "start_pos": 115, "end_pos": 117 }, { "start_pos": 118, "end_pos": 120 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F2X2-1", "uniprot_ac": "A0A9J7F2X2", "uniprot_id": "A0A9J7F2X2_CRIGR", "mass": { "chemical_mass": 27953.0, "monoisotopic_mass": 27953.0 }, "refseq": { "ac": "XP_003513827", "name": "transmembrane protein 33 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513827" }, "gene_names": [ { "name": "Tmem33", "type": "recommended", "evidence": [ { "id": "A0A9J7F2X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2X2" } ] }, { "name": "Tmem33", "type": "synonym", "evidence": [ { "id": "XP_003513827", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513827" } ] } ], "protein_names": [ { "name": "Transmembrane protein 33 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F2X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2X2/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 33 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003513827", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513827" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616124.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513827", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513827" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2X2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2X2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2X2", "locus": {} } ], "crossref": [ { "id": "A0A9J7F2X2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F2X2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766549", "url": "https://www.ncbi.nlm.nih.gov/gene/100766549", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766549", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766549", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FFSIRPT", "url": "https://omabrowser.org/oma/group/FFSIRPT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F2X2", "url": "https://www.orthodb.org/?gene=A0A9J7F2X2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IGD1", "url": "https://www.orthodb.org/?gene=G3IGD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12703", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12703", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12703:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12703:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513827", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513827", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F2X2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2X2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IGD1", "url": "https://www.uniprot.org/uniprotkb/G3IGD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IGD1-1", "url": "https://www.uniprot.org/uniprotkb/G3IGD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADTTPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRLHQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSVLDKLSANQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRNLFNELRIVVEHIIMKPSCPLFVRRLCLQSIAFISRLAPTVA", "length": 247, "header": "tr|A0A9J7F2X2-1|A0A9J7F2X2_CRIGR Isoform 1 of Transmembrane protein 33 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem33 PE=3 SV=1 CANONICAL=A0A9J7F2X2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F2X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2X2/entry", "sequence": { "sequence": "MADTTPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRLHQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSVLDKLSANQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRNLFNELRIVVEHIIMKPSCPLFVRRLCLQSIAFISRLAPTVA", "length": 247, "header": "tr|A0A9J7F2X2-1|A0A9J7F2X2_CRIGR Isoform 1 of Transmembrane protein 33 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem33 PE=3 SV=1 CANONICAL=A0A9J7F2X2-1" }, "locus": {} }, { "isoform_ac": "G3IGD1-1", "url": "https://www.uniprot.org/uniprotkb/G3IGD1/entry", "sequence": { "sequence": "MADTTPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRLHQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSVLDKLSANQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRNLFNELRIVVEHIIMKPSCPLFVRRLCLQSIAFISRLAPTA", "length": 246, "header": "tr|G3IGD1-1|A0A9J7F2X2_CRIGR Computationally mapped isoform of Transmembrane protein 33 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem33 PE=3 SV=1 CANONICAL=A0A9J7F2X2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IGD1", "url": "https://www.uniprot.org/uniprotkb/G3IGD1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IGD1", "url": "https://www.uniprot.org/uniprotkb/G3IGD1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766549", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766549", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1UR13-1", "protein_name": "Transmembrane protein 33", "gene_name": "TMEM33", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MADTAPNGPQGGAVQFMMANKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRLHQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSVLDKLSANQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHLIMKPACPLFVRRLCLQSIAFISRLAPTVA", "length": 246 }, "evidence": [ { "id": "A0A9J7F2X2", "url": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F1W9-1", "uniprot_ac": "A0A9J7F1W9", "uniprot_id": "A0A9J7F1W9_CRIGR", "mass": { "chemical_mass": 16089.0, "monoisotopic_mass": 16089.0 }, "refseq": { "ac": "XP_003506343", "name": "small integral membrane protein 29 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506343" }, "gene_names": [ { "name": "Smim29", "type": "recommended", "evidence": [ { "id": "A0A9J7F1W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W9" } ] }, { "name": "Smim29", "type": "synonym", "evidence": [ { "id": "XP_003506343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506343" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 29 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F1W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W9/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 29 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003506343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506343" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 144 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614227.1) and transcript sequence (IACG01069068.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003506343.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506343", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506343" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smim29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W9", "locus": {} } ], "crossref": [ { "id": "A0A9J7F1W9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F1W9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756942", "url": "https://www.ncbi.nlm.nih.gov/gene/100756942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043239", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043239", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756942", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AVIMYIR", "url": "https://omabrowser.org/oma/group/AVIMYIR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F1W9", "url": "https://www.orthodb.org/?gene=A0A9J7F1W9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47730:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47730:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27898", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27898", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506343", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EW98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EW98-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HS07", "url": "https://www.uniprot.org/uniprotkb/G3HS07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HS07-1", "url": "https://www.uniprot.org/uniprotkb/G3HS07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQTCLSPLSTTDNLASSSPGSPGEAPSRGHRCSCRPLSHLATDVMSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYMQKKQRVDRLRHHLLPMYSYDPAEELHEAEQELLSDVGDPKVVRGWQSSYQHKRVPLLDIKT", "length": 146, "header": "tr|A0A9J7F1W9-1|A0A9J7F1W9_CRIGR Isoform 1 of Small integral membrane protein 29 isoform X1 OS=Cricetulus griseus OX=10029 GN=Smim29 PE=4 SV=1 CANONICAL=A0A9J7F1W9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EW98-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW98/entry", "sequence": { "sequence": "MQTCLSPLSTTDNLASSSPGSPGEAPSRGHRCSCRPLSHLATDVMSNTTVPNAPQANSDSMVMYMQKKQRVDRLRHHLLPMYSYDPAEELHEAEQELLSDVGDPKVVRGWQSSYQHKRVPLLDIKT", "length": 126, "header": "tr|A0A9J7EW98-1|A0A9J7EW98_CRIGR Computationally mapped isoform of Small integral membrane protein 29 isoform X2 OS=Cricetulus griseus OX=10029 GN=Smim29 PE=4 SV=1 CANONICAL=A0A9J7F1W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0W0/entry", "sequence": { "sequence": "MSNTTVPNAPQANSDSMVMYMQKKQRVDRLRHHLLPMYSYDPAEELHEAEQELLSDVGDPKVVRGWQSSYQHKRVPLLDIKT", "length": 82, "header": "tr|A0A9J7F0W0-1|A0A9J7F0W0_CRIGR Computationally mapped isoform of Small integral membrane protein 29 isoform X4 OS=Cricetulus griseus OX=10029 GN=Smim29 PE=4 SV=1 CANONICAL=A0A9J7F1W9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W9/entry", "sequence": { "sequence": "MQTCLSPLSTTDNLASSSPGSPGEAPSRGHRCSCRPLSHLATDVMSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYMQKKQRVDRLRHHLLPMYSYDPAEELHEAEQELLSDVGDPKVVRGWQSSYQHKRVPLLDIKT", "length": 146, "header": "tr|A0A9J7F1W9-1|A0A9J7F1W9_CRIGR Isoform 1 of Small integral membrane protein 29 isoform X1 OS=Cricetulus griseus OX=10029 GN=Smim29 PE=4 SV=1 CANONICAL=A0A9J7F1W9-1" }, "locus": {} }, { "isoform_ac": "G3HS07-1", "url": "https://www.uniprot.org/uniprotkb/G3HS07/entry", "sequence": { "sequence": "MSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYMQKKQRVDRLRHHLLPMYSYDPAEELHEAEQELLSDVGDPKVVRGWQSSYQHKRVPLLDIKT", "length": 102, "header": "tr|G3HS07-1|A0A9J7F1W9_CRIGR Computationally mapped isoform of Small integral membrane protein 29 isoform X1 OS=Cricetulus griseus OX=10029 GN=Smim29 PE=4 SV=1 CANONICAL=A0A9J7F1W9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HS07", "url": "https://www.uniprot.org/uniprotkb/G3HS07" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HS07", "url": "https://www.uniprot.org/uniprotkb/G3HS07" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756942", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q86T20-1", "protein_name": "Small integral membrane protein 29", "gene_name": "SMIM29", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKKKRVDRLRHHLLPMYSYDPAEELHEAEQELLSDMGDPKVVHGWQSGYQHKRMPLLDVKT", "length": 102 }, "evidence": [ { "id": "A0A9J7F1W9", "url": "https://omabrowser.org/oma/group/A0A9J7F1W9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R043-1", "protein_name": "Small integral membrane protein 29", "gene_name": "Smim29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKKKRVDRLRHHLLPMYSYDPAEELQEAEQELLSDVGDPKVVHGWQSSYQHKRMPLLDIKT", "length": 102 }, "evidence": [ { "id": "A0A9J7F1W9", "url": "https://omabrowser.org/oma/group/A0A9J7F1W9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F3A1-1", "uniprot_ac": "A0A9J7F3A1", "uniprot_id": "A0A9J7F3A1_CRIGR", "mass": { "chemical_mass": 61095.0, "monoisotopic_mass": 61095.0 }, "refseq": { "ac": "XP_027246113", "name": "zinc finger protein 395 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246113" }, "gene_names": [ { "name": "Znf395", "type": "recommended", "evidence": [ { "id": "A0A9J7F3A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ] }, { "name": "Znf395", "type": "synonym", "evidence": [ { "id": "XP_027246113", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246113" } ] } ], "protein_names": [ { "name": "Zinc finger protein 395 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F3A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 395 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027246113", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246113" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246113", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246113" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf395", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1", "locus": {} } ], "crossref": [ { "id": "A0A9J7F3A1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F3A1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772882", "url": "https://www.ncbi.nlm.nih.gov/gene/100772882", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772882", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772882", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DHDYQRK", "url": "https://omabrowser.org/oma/group/DHDYQRK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F3A1", "url": "https://www.orthodb.org/?gene=A0A9J7F3A1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I6L5", "url": "https://www.orthodb.org/?gene=G3I6L5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13006:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13006:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15997", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15997", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246113", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246113", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I6L5", "url": "https://www.uniprot.org/uniprotkb/G3I6L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I6L5-1", "url": "https://www.uniprot.org/uniprotkb/G3I6L5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWRKRHLLQPSQCDPGPREGERRELTSQSCPPLQTQAMVRMDDPPVMHIRRQSRVSSMLSRRLGKRSLLGARVLGPNASEVPLGASLPLEPQIEVPEGATPQPSHTSKDPVCQEQPKEVLKALGTSGHPQVAFHPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQICCKVEEVWLAELQGATSQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDPWKESGDVSDSGSSTTSGHWSGSSGISTPSPPHPQASPKYLGDAFGSPQTDHGFETDSDPFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDPDQFKREEDFYYTEMQMKEESALAVAAPSAPGTPNSEPAPTSRVTSPSLAALSLPPPKVQSSGPEHPGLESPLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAPTTTSPLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSSRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 560, "header": "tr|A0A9J7F3A1-1|A0A9J7F3A1_CRIGR Isoform 1 of Zinc finger protein 395 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf395 PE=4 SV=1 CANONICAL=A0A9J7F3A1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F3A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1/entry", "sequence": { "sequence": "MAWRKRHLLQPSQCDPGPREGERRELTSQSCPPLQTQAMVRMDDPPVMHIRRQSRVSSMLSRRLGKRSLLGARVLGPNASEVPLGASLPLEPQIEVPEGATPQPSHTSKDPVCQEQPKEVLKALGTSGHPQVAFHPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQICCKVEEVWLAELQGATSQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDPWKESGDVSDSGSSTTSGHWSGSSGISTPSPPHPQASPKYLGDAFGSPQTDHGFETDSDPFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDPDQFKREEDFYYTEMQMKEESALAVAAPSAPGTPNSEPAPTSRVTSPSLAALSLPPPKVQSSGPEHPGLESPLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAPTTTSPLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSSRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 560, "header": "tr|A0A9J7F3A1-1|A0A9J7F3A1_CRIGR Isoform 1 of Zinc finger protein 395 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf395 PE=4 SV=1 CANONICAL=A0A9J7F3A1-1" }, "locus": {} }, { "isoform_ac": "G3I6L5-1", "url": "https://www.uniprot.org/uniprotkb/G3I6L5/entry", "sequence": { "sequence": "MLSRRLGKRSLLGARVLGPNASEVPLGASLPLEPQIEVPEGATPQPSHTSKDPVCQEQPKEVLKALGTSGHPQVAFHPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQICCKVEEVWLAELQGATSQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDPWKESGDVSDSGSSTTSGHWSGSSGISTPSPPHPQASPKYLGDAFGSPQTDHGFETDSDPFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDPDQFKREEDFYYTEMQMKEESALAVAAPSAPGTPNSEPAPTSRVTSPSLAALSLPPPKVQSSGPEHPGLESPLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAPTTTSPLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSSRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 502, "header": "tr|G3I6L5-1|A0A9J7F3A1_CRIGR Computationally mapped isoform of Zinc finger protein 395 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf395 PE=4 SV=1 CANONICAL=A0A9J7F3A1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I6L5", "url": "https://www.uniprot.org/uniprotkb/G3I6L5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I6L5", "url": "https://www.uniprot.org/uniprotkb/G3I6L5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772882", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772882", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A480NW01-1", "protein_name": "Zinc finger protein 395", "gene_name": "ZNF395", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEVWLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPTPGMTSPPLAILPPPPPKAQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATAPSTASSLSPVRSRSLSFSEPQQPPPAMKSHLIVTSPPRAQSSARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 500 }, "evidence": [ { "id": "A0A9J7F3A1", "url": "https://omabrowser.org/oma/group/A0A9J7F3A1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D3ZPR2-1", "protein_name": "Zinc finger protein 395", "gene_name": "Zfp395", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTEKPVSSMLSRRLGKRSLLGARVLGPSASEVPSGASLPLEPQIEVPEGATPQSSLTSKDPVCQEQPKEVLRALGTSGHPQVTFQPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQICCKVEEVWLAEPQGTTSHVPASEPRAQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDPWKESGDISDSGSSGHWSGSSGSSTPSPPHPQASPKYLGDAFGSPQTDHGFETDTDPFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEMQMKEDCAVAVAAPPPPGTPTGEPVSTSRVTSPSLAALSLPPAKVQSSGPEHPGLESSLPPVALSKSAPGSFWHIQADHAYQALPAFQIPVSPHIYTSISWAAAPTTTSSLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSTRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 516 }, "evidence": [ { "id": "A0A9J7F3A1", "url": "https://omabrowser.org/oma/group/A0A9J7F3A1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q5N9-1", "protein_name": "Zinc finger protein 395", "gene_name": "Zfp395", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSRRLGKRSLLGARVLGPSAAEVPSGATLPLEPQIEVPEGAMSLSPLTSKDPVCQEQPKELLKALGTSGHPQVAFQPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQIRCKVEEVWLAELQGSASHVPALEPGAQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDLWKESGDVSDSGSSGHWSGSSGSSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRRNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEMQMKEESAQAVAAPPAPGTPMGEPASTSRVTSPSLAALSLPPAKVQSSGPEHPGLESSLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAPTTTSSLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSTRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 508 }, "evidence": [ { "id": "A0A9J7F3A1", "url": "https://omabrowser.org/oma/group/A0A9J7F3A1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H8N7-1", "protein_name": "Zinc finger protein 395", "gene_name": "ZNF395", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKEVLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCCRVEEVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTPSMTGLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSVSWAAAPSAACSLSPVRSRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 513 }, "evidence": [ { "id": "A0A9J7F3A1", "url": "https://omabrowser.org/oma/group/A0A9J7F3A1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F3A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3A1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 331, "end_pos": 361, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EWE0-1", "uniprot_ac": "A0A9J7EWE0", "uniprot_id": "A0A9J7EWE0_CRIGR", "mass": { "chemical_mass": 42505.0, "monoisotopic_mass": 42505.0 }, "refseq": { "ac": "XP_027244123", "name": "dnaJ homolog subfamily B member 12 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244123" }, "gene_names": [ { "name": "Dnajb12", "type": "recommended", "evidence": [ { "id": "A0A9J7EWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ] }, { "name": "Dnajb12", "type": "synonym", "evidence": [ { "id": "XP_027244123", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244123" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily B member 12 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7EWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily B member 12 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027244123", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244123" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244123", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244123" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dnajb12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0", "locus": {} } ], "crossref": [ { "id": "A0A9J7EWE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EWE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759717", "url": "https://www.ncbi.nlm.nih.gov/gene/100759717", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759717", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759717", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ARSREHN", "url": "https://omabrowser.org/oma/group/ARSREHN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EWE0", "url": "https://www.orthodb.org/?gene=A0A9J7EWE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43908", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43908", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43908:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43908:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09320", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09320", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244123", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244123", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EWE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HJ29", "url": "https://www.uniprot.org/uniprotkb/G3HJ29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HJ29-1", "url": "https://www.uniprot.org/uniprotkb/G3HJ29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVTELIESLNQKPQSAGDQPQPTDTSHTTHRKAGGTETPSANGEAGGGESTKGYTSEQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRENQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPSVGHVHKRVTDHLSVVYYVADTFSDEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCSRLSETMKSLENFW", "length": 378, "header": "tr|A0A9J7EWE0-1|A0A9J7EWE0_CRIGR Isoform 1 of DnaJ homolog subfamily B member 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dnajb12 PE=4 SV=1 CANONICAL=A0A9J7EWE0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EWE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0/entry", "sequence": { "sequence": "MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVTELIESLNQKPQSAGDQPQPTDTSHTTHRKAGGTETPSANGEAGGGESTKGYTSEQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRENQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPSVGHVHKRVTDHLSVVYYVADTFSDEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCSRLSETMKSLENFW", "length": 378, "header": "tr|A0A9J7EWE0-1|A0A9J7EWE0_CRIGR Isoform 1 of DnaJ homolog subfamily B member 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dnajb12 PE=4 SV=1 CANONICAL=A0A9J7EWE0-1" }, "locus": {} }, { "isoform_ac": "G3HJ29-1", "url": "https://www.uniprot.org/uniprotkb/G3HJ29/entry", "sequence": { "sequence": "MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVTELIESLNQKPQSAGDQPQPTDTSHTTHRKAGGTETPSANGEAGGGESTKGYTSEQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRENQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPSVGHVHKRVTDHLSVVYYVADTFSDEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCSRLSEVQASLHG", "length": 376, "header": "tr|G3HJ29-1|A0A9J7EWE0_CRIGR Computationally mapped isoform of DnaJ homolog subfamily B member 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dnajb12 PE=4 SV=1 CANONICAL=A0A9J7EWE0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HJ29", "url": "https://www.uniprot.org/uniprotkb/G3HJ29" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HJ29", "url": "https://www.uniprot.org/uniprotkb/G3HJ29" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759717", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759717", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8D0IPU6-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member B12", "gene_name": "DNAJB12", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESNKDEAERCISIALKAIQSNQHDRALRFLEKAQRLYPTPRVRALIESLNQKPQSAGDQPQSTEATHATHRKAGGASSPSANGEAGGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARQGHGHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYAYHQRQDRRENQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSLRPSVGHVHKRVTDHLNVVYYVADTFSEEYTGSSLKMVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHKAQKMGTPSCNRLSEVQASLHG", "length": 376 }, "evidence": [ { "id": "A0A9J7EWE0", "url": "https://omabrowser.org/oma/group/A0A9J7EWE0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F7F4L4-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member B12", "gene_name": "Dnajb12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVTALIESLNQKSQSAGDQSQPTDTTHTTTRKTSGTETPSANGEAGGGESTKGYTSEQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKNQAARHGHSHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPSVGHIHKRVTDHLNVAYYVADTFSEEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMSTPSCSRLSEVQASLHG", "length": 376 }, "evidence": [ { "id": "A0A9J7EWE0", "url": "https://omabrowser.org/oma/group/A0A9J7EWE0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9M2L3-1", "protein_name": "DnaJ heat shock amino-terminal domain protein (DUF1977)", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGNKDDALKCLKICKSAMEAGDRPRALKFLAKARRLDPNLPIDDLVSELNNNKSDEPGSAKSPGSAAAKDSSNSSDRPSLRQRGSSTTSSSSSMSYTEEQISIVRKIKSKKDYYEILGLESNCSVDDVRKAYRKLSLKVHPDKNQAPGSEEAFKSVSKAFQCLSNDEARKKYDVSGSDEPIYQPRRSARSNGFNGGYYYEDEFDPNEIFRSFFGGGGFGGGGMPPATAQFRSFNFGATRQRTANNNQAPDAGFNARILLQLLPVVFILLLNFMPSSQPVYQLSATYPYQYKFTTQKGVNYFVKSSKFEQDYPRDSNDRHTLEEQVERDYVSILSQNCRYEMQRKQWGFVRETPHCDMMRRFDTAAA", "length": 367 }, "evidence": [ { "id": "A0A9J7EWE0", "url": "https://omabrowser.org/oma/group/A0A9J7EWE0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NXW2-1", "protein_name": "DnaJ homolog subfamily B member 12", "gene_name": "DNAJB12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVRALIESLNQKPQTAGDQPPPTDTTHATHRKAGGTDAPSANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHGHGDFHRGFEADISPEDLFNMFFGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPSVGHIHRRVTDHLGVVYYVGDTFSEEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTDMYHRAQKMGTPSCSRLSEVQASLHG", "length": 375 }, "evidence": [ { "id": "A0A9J7EWE0", "url": "https://omabrowser.org/oma/group/A0A9J7EWE0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VFP0-1", "protein_name": "J domain-containing protein", "gene_name": "Dmel\\CG3061", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDGNKDEAQRCIDFAVQALAAGKIEKAEKFLLKAERLFPTDNAKKLLAQLKSTPSNESNGKSRTAGASDEKDSGPRKRVNSDSRSSAPDYTKDQLEAVRKVKTCKDYYEVLGVSKTATDSEIKKAYKKLALQLHPDKNKAPGAVEAFKALGNAAGVLTDAEKRKNYDLYGINESHNGHGNNGGGHHGHGQYYNNEYGYSRGFQADISAEELFNMFFNGGFPQQNVHMRQQRRRQQAREDREGNNSSALVNLLPIVLLIGLSMMSSFFISDPMYSLTPSHKYSVKRETNSLKVPYYVKDNFYSEYQGSVARLEESVEEDFVNHLKHSCSRERNYRDSMLAKARTFGDRDLYRKAQNINTPSCENLQKYLIT", "length": 370 }, "evidence": [ { "id": "A0A9J7EWE0", "url": "https://omabrowser.org/oma/group/A0A9J7EWE0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "pmid": "" }, { "name": "cellular response to misfolded protein", "id": "GO:0071218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071218", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "pmid": "" }, { "name": "protein-containing complex assembly", "id": "GO:0065003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0065003", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "Hsp70 protein binding", "id": "GO:0030544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030544", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWE0" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 175, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F292-1", "uniprot_ac": "A0A9J7F292", "uniprot_id": "A0A9J7F292_CRIGR", "mass": { "chemical_mass": 52069.0, "monoisotopic_mass": 52069.0 }, "refseq": { "ac": "XP_007645798", "name": "uncharacterized protein C8orf58 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645798" }, "gene_names": [ { "name": "CUNH8orf58", "type": "recommended", "evidence": [ { "id": "A0A9J7F292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292" } ] }, { "name": "CUNH8orf58", "type": "synonym", "evidence": [ { "id": "XP_007645798", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645798" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C8orf58 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C8orf58 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007645798", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645798" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613613.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007645798.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645798", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645798" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F292", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH8orf58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292", "locus": {} } ], "crossref": [ { "id": "A0A9J7F292", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F292", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769160", "url": "https://www.ncbi.nlm.nih.gov/gene/100769160", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769160", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769160", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYX4", "url": "https://www.orthodb.org/?gene=A0A9J7EYX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F292", "url": "https://www.orthodb.org/?gene=A0A9J7F292", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J3C2", "url": "https://www.orthodb.org/?gene=A0A9J7J3C2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J7R9", "url": "https://www.orthodb.org/?gene=A0A9J7J7R9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GUY4", "url": "https://www.orthodb.org/?gene=G3GUY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37336", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37336", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37336:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37336:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15552", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15552", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645798", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645798", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EYX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F292", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F292-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3C2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GUY4", "url": "https://www.uniprot.org/uniprotkb/G3GUY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GUY4-1", "url": "https://www.uniprot.org/uniprotkb/G3GUY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSGPNLHLALSFSHIQGSPPRLGHFRQILIKGLLIHLHFRLSQLARTLSPTCPKCRFLSIVNNCYKENPILPSKGRAFSQWGCGWFVSFSPLVQDTPPQVLKEMLPTARNAGGDEGSLPSLILTLLTDGAFEDLAQGCVVPGVTCTYRRIPDKTHGCSLDFGEGQMPLLKLASQDSGMEMVVGDSPLATLSGLSQDSLNLEPTGSPELPSVQLDRLRARRKLDQVLERSQEFPSLSGQRRHSLQLLSKPVGGVPIFAGELESTEAATELEEAKVVGDVESGALTCLPGQGLRYLEHLCLVLEQMARLQQLYLQLQTQRPSRDPQEEELALALSSSSHSPDNRMQGHKEQLSQTRDLGDVVLSEGAEAASLPEVGVLIANAPRLPEALLESTHTLPSSQGHKQDVSHWDKVKVLLNRIRWRSPRLPEPPAPPDGSGPRMEFTNLSERIQYHSHRKTFMPTLVVKKPRAKNLSV", "length": 474, "header": "tr|A0A9J7F292-1|A0A9J7F292_CRIGR Isoform 1 of Uncharacterized protein C8orf58 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf58 PE=4 SV=1 CANONICAL=A0A9J7F292-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EYX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX4/entry", "sequence": { "sequence": "MLSRRRVFAVERLGSRDGAFEDLAQGCVVPGVTCTYRRIPDKTHGCSLDFGEGQMPLLKLASQDSGMEMVVGDSPLATLSGLSQDSLNLEPTGSPELPSVQLDRLRARRKLDQVLERSQEFPSLSGQRRHSLQLLSKPVGGVPIFAGELESTEAATELEEAKVVGDVESGALTCLPGQGLRYLEHLCLVLEQMARLQQLYLQLQTQRPSRDPQEEELALALSSSSHSPDNRMQGHKEQLSQTRDLGAEAASLPEVGVLIANAPRLPEALLESTHTLPSSQGHKDVSHWDKVKVLLNRIRWRSPRLPEPPAPPDGSGPRMEFTNLSERIQYHSHRKTFMPTLVVKKPRAKNLSV", "length": 353, "header": "tr|A0A9J7EYX4-1|A0A9J7EYX4_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf58 homolog isoform X6 OS=Cricetulus griseus OX=10029 GN=CUNH8orf58 PE=4 SV=1 CANONICAL=A0A9J7F292-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F292-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292/entry", "sequence": { "sequence": "MALSGPNLHLALSFSHIQGSPPRLGHFRQILIKGLLIHLHFRLSQLARTLSPTCPKCRFLSIVNNCYKENPILPSKGRAFSQWGCGWFVSFSPLVQDTPPQVLKEMLPTARNAGGDEGSLPSLILTLLTDGAFEDLAQGCVVPGVTCTYRRIPDKTHGCSLDFGEGQMPLLKLASQDSGMEMVVGDSPLATLSGLSQDSLNLEPTGSPELPSVQLDRLRARRKLDQVLERSQEFPSLSGQRRHSLQLLSKPVGGVPIFAGELESTEAATELEEAKVVGDVESGALTCLPGQGLRYLEHLCLVLEQMARLQQLYLQLQTQRPSRDPQEEELALALSSSSHSPDNRMQGHKEQLSQTRDLGDVVLSEGAEAASLPEVGVLIANAPRLPEALLESTHTLPSSQGHKQDVSHWDKVKVLLNRIRWRSPRLPEPPAPPDGSGPRMEFTNLSERIQYHSHRKTFMPTLVVKKPRAKNLSV", "length": 474, "header": "tr|A0A9J7F292-1|A0A9J7F292_CRIGR Isoform 1 of Uncharacterized protein C8orf58 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf58 PE=4 SV=1 CANONICAL=A0A9J7F292-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA0/entry", "sequence": { "sequence": "MALSGPNLHLALSFSHIQGSPPRLGHFRQILIKGLLIHLHFRLSQLARTLSPTCPKCRFLSIVNNCYKENPILPSKGRAFSQWGCGWFVSFSPLVQDTPPQVLKEMLPTARNAGGDEGSLPSLILTLLTDGAFEDLAQGCVVPGVTCTYRRIPDKTHGCSLDFGEGQMPLLKLASQDSGMEMVVGDSPLATLSGLSQDSLNLEPTGSPELPSVQLDRLRARRKLDQVLERSQEFPSLSGQRRHSLQLLSKPVGGVPIFAGELESTEAATELEEAKVVGDVESGALTCLPGQGLRYLEHLCLVLEQMARLQQLYLQLQTQRPSRDPQEEELALALSSSSHSPDNRMQGHKEQLSQTRDLGAEAASLPEVGVLIANAPRLPEALLESTHTLPSSQGHKDVSHWDKVKVLLNRIRWRSPRLPEPPAPPDGSGPRMEFTNLSERIQYHSHRKTFMPTLVVKKPRAKNLSV", "length": 466, "header": "tr|A0A9J7HEA0-1|A0A9J7HEA0_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf58 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=CUNH8orf58 PE=4 SV=1 CANONICAL=A0A9J7F292-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J3C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3C2/entry", "sequence": { "sequence": "MALSGPNLHLALSFSHIQGSPPRLGHFRQILIKGLLIHLHFRLSQLARTLSPTCPKCRFLSIVNNCYKENPILPSKGRAFSQWGCGWFVSFSPLVQDTPPQVLKEMLPTARNAGGDEGSLPSLILTLLTDGAFEDLAQGCVVPGVTCTYRRIPDKTHGCSLDFGEGQMPLLKLASQDSGMEMVVGDSPLATLSGLSQDSLNLEPTGSPELPSVQLDRLRARRKLDQVLERSQEFPSLSGQRRHSLQLLSKPVGGVPIFAGELESTEAATELEEAKVVGDVESGALTCLPGQGLRYLEHLCLVLEQMARLQQLYLQLQTQRPSRDPQEEELALALSSSSHSPDNRMQGHKEQLSQTRDLGDVVLSEGAEAASLPEVGVLIANAPRLPEALLESTHTLPSSQGHKDVSHWDKVKVLLNRIRWRSPRLPEPPAPPDGSGPRMEFTNLSERIQYHSHRKTFMPTLVVKKPRAKNLSV", "length": 473, "header": "tr|A0A9J7J3C2-1|A0A9J7J3C2_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf58 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH8orf58 PE=4 SV=1 CANONICAL=A0A9J7F292-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R9/entry", "sequence": { "sequence": "MALSGPNLHLALSFSHIQGSPPRLGHFRQILIKGLLIHLHFRLSQLARTLSPTCPKCRFLSIVNNCYKENPILPSKGRAFSQWGCGWFVSFSPLVQDTPPQVLKEMLPTARNAGGDEGSLPSLILTLLTDGAFEDLAQGCVVPGVTCTYRRIPDKTHGCSLDFGEGQMPLLKLASQDSGMEMVVGDSPLATLSGLSQDSLNLEPTGSPELPSVQLDRLRARRKLDQVLERSQEFPSLSGQRRHSLQLLSKPVGGVPIFAGELESTEAATELEEAKVVGDVESGALTCLPGQGLRYLEHLCLVLEQMARLQQLYLQLQTQRPSRDPQEEELALALSSSSHSPDNRMQGHKEQLSQTRDLGAEAASLPEVGVLIANAPRLPEALLESTHTLPSSQGHKQDVSHWDKVKVLLNRIRWRSPRLPEPPAPPDGSGPRMEFTNLSERIQYHSHRKTFMPTLVVKKPRAKNLSV", "length": 467, "header": "tr|A0A9J7J7R9-1|A0A9J7J7R9_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf58 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=CUNH8orf58 PE=4 SV=1 CANONICAL=A0A9J7F292-1" }, "locus": {} }, { "isoform_ac": "G3GUY4-1", "url": "https://www.uniprot.org/uniprotkb/G3GUY4/entry", "sequence": { "sequence": "MLSRRRVFAVERLGSRDGAFEDLAQGCVVPGVTCTYRRIPDKTHGCSLDFGEGQMPLLKLASQDSGMEMVVGDSPLATLSGLSQDSLNLEPTGSPELPSVQLDRLRARRKLDQVLERSQEFPSLSGQRRHSLQLLSKPVGGVPIFAGELESTEAATELEEAKVVGDVESGALTCLPGQGLRYLEHLCLVLEQMARLQQLYLQLQTQRPSRDPQEEELALALSSSSHSPDNRMQGHKEQLSQTRDLGDVVLSEGAEAASLPEVGVLIANAPRLPEALLESTHTLPSSQGHKQDVSHWDKVKVLLNRIRWRSPRLPEPPAPPDGSGPRMEFTNLSERIQYHSHRKTFMPTLVVKKPRAKNLSV", "length": 361, "header": "tr|G3GUY4-1|A0A9J7F292_CRIGR Computationally mapped isoform of Uncharacterized protein C8orf58 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH8orf58 PE=4 SV=1 CANONICAL=A0A9J7F292-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GUY4", "url": "https://www.uniprot.org/uniprotkb/G3GUY4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GUY4", "url": "https://www.uniprot.org/uniprotkb/G3GUY4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F292", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F292" }, { "id": "PF15552", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15552" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4657", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 474, "start_aa": "Met", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 444, "end_pos": 446 }, { "start_pos": 471, "end_pos": 473 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EXG7-1", "uniprot_ac": "A0A9J7EXG7", "uniprot_id": "A0A9J7EXG7_CRIGR", "mass": { "chemical_mass": 35635.0, "monoisotopic_mass": 35635.0 }, "refseq": { "ac": "XP_007620867", "name": "SERTA domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007620867" }, "gene_names": [ { "name": "Sertad2", "type": "recommended", "evidence": [ { "id": "A0A9J7EXG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7" } ] }, { "name": "Sertad2", "type": "synonym", "evidence": [ { "id": "XP_007620867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007620867" } ] } ], "protein_names": [ { "name": "SERTA domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007620867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007620867" }, { "id": "A0A9J7EXG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613679.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007620867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007620867" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sertad2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7", "locus": {} } ], "crossref": [ { "id": "A0A9J7EXG7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EXG7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753488", "url": "https://www.ncbi.nlm.nih.gov/gene/100753488", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009263", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009263", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052262", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052262", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753488", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753488", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FCAVSPP", "url": "https://omabrowser.org/oma/group/FCAVSPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EXG7", "url": "https://www.orthodb.org/?gene=A0A9J7EXG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16277:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16277:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007620867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007620867", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EXG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EXG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H127", "url": "https://www.uniprot.org/uniprotkb/G3H127", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H127-1", "url": "https://www.uniprot.org/uniprotkb/G3H127-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTRALKLAHNSSQYMLGKGGKRKFDEHEDGLEGKIVSPSDGPSRVSYTLQRQTVFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPAFTPTSQPSDSLSDSYREAPPAFTHLASPPAHPCDLGSTTPLEACLTPASLLEDDDDTFCTLQAAPPAAPTRLPCAALPPEKDSFSSALDDIEELCPTSTSTEAAVASSAAPDSLKGTSSESSIQKPEGPQEGRTDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCASTSGTASKMAPVSADELLKTLAPYSGQPVAPSQPFKMDLTELDHIMEVLVGS", "length": 331, "header": "tr|A0A9J7EXG7-1|A0A9J7EXG7_CRIGR Isoform 1 of SERTA domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sertad2 PE=4 SV=1 CANONICAL=A0A9J7EXG7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EXG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7/entry", "sequence": { "sequence": "MTRALKLAHNSSQYMLGKGGKRKFDEHEDGLEGKIVSPSDGPSRVSYTLQRQTVFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPAFTPTSQPSDSLSDSYREAPPAFTHLASPPAHPCDLGSTTPLEACLTPASLLEDDDDTFCTLQAAPPAAPTRLPCAALPPEKDSFSSALDDIEELCPTSTSTEAAVASSAAPDSLKGTSSESSIQKPEGPQEGRTDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCASTSGTASKMAPVSADELLKTLAPYSGQPVAPSQPFKMDLTELDHIMEVLVGS", "length": 331, "header": "tr|A0A9J7EXG7-1|A0A9J7EXG7_CRIGR Isoform 1 of SERTA domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sertad2 PE=4 SV=1 CANONICAL=A0A9J7EXG7-1" }, "locus": {} }, { "isoform_ac": "G3H127-1", "url": "https://www.uniprot.org/uniprotkb/G3H127/entry", "sequence": { "sequence": "MLGKGGKRKFDEHEDGLEGKIVSPSDGPSRVSYTLQRQTVFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPAFTPTSQPSDSLSDSYREAPPAFTHLASPPAHPCDLGSTTPLEACLTPASLLEDDDDTFCTLQAAPPAAPTRLPCAALPPEKDSFSSALDDIEELCPTSTSTEAAVASSAAPDSLKGTSSESSIQKPEGPQEGRTDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCASTSGTASKMAPVSADELLKTLAPYSGQPVAPSQPFKMDLTELDHIMEVLVGS", "length": 317, "header": "tr|G3H127-1|A0A9J7EXG7_CRIGR Computationally mapped isoform of SERTA domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sertad2 PE=4 SV=1 CANONICAL=A0A9J7EXG7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H127", "url": "https://www.uniprot.org/uniprotkb/G3H127" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H127", "url": "https://www.uniprot.org/uniprotkb/G3H127" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753488", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753488", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AI46-1", "protein_name": "SERTA domain containing 2", "gene_name": "SERTAD2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLGKGGKRKFDEHEDGLEGKIVSPSDGPSKVSYTLQRQTIFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPAFPASSPPDPRGAGLGAGSREAPPAFSAPAAPPAPPCELGGPAPLEACLTPASLLEDYDDTFCTSPAAPPVAPARLAPPALPPEKDSFSSALDEIEELCPTPTSAEAATDGSKGGSGGAGAQRPEGDSRPDDPKLMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTSSKMAPVSADDLLKTLAPYSSQPVTPSQPFKMDLTELDHIMEVLVGS", "length": 312 }, "evidence": [ { "id": "A0A9J7EXG7", "url": "https://omabrowser.org/oma/group/A0A9J7EXG7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0AAA9TZ06-1", "protein_name": "SERTA domain containing 2", "gene_name": "SERTAD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MYTRYMLGKGGKRKFDEHEDGLEGKIVSPSDGPSKVSYTLQRQTIFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPAFPASAPPAAAADPLGSSSREAPPAFSQPAPAPCELGGAAALEACLTPASLLEDDDPDTFCTSSPAAPARLAPPALLPPEKDSFSSALDEIEELCPTSTSTEAAEADGPKGDSSSGGPGAPQRPEGLQEGGRPEDPKLMDSLPGNFEITASTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMSPVSADDLLKTLAPYSSQPVAPSQPFKMDLTELDHIMEVLVGS", "length": 320 }, "evidence": [ { "id": "A0A9J7EXG7", "url": "https://omabrowser.org/oma/group/A0A9J7EXG7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q14140-1", "protein_name": "SERTA domain-containing protein 2", "gene_name": "SERTAD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLGKGGKRKFDEHEDGLEGKIVSPCDGPSKVSYTLQRQTIFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPMFTPSSQPTTEPSDSYREAPPAFSHLASPSSHPCDLGSTTPLEACLTPASLLEDDDDTFCTSQAMQPTAPTKLSPPALLPEKDSFSSALDEIEELCPTSTSTEAATAATDSVKGTSSEAGTQKLDGPQESRADDSKLMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSSSGTASKMAPVSADDLLKTLAPYSSQPVTPSQPFKMDLTELDHIMEVLVGS", "length": 314 }, "evidence": [ { "id": "A0A9J7EXG7", "url": "https://omabrowser.org/oma/group/A0A9J7EXG7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JJG5-1", "protein_name": "SERTA domain-containing protein 2", "gene_name": "Sertad2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLGKGGKRKFDEHEDGLEGKIVSPSDGPSRVSYTLQRQTIFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPAFTPSSQPSNSLSDSYQEAPPPAPHPCDLGSTTPLEACLTPASLLEDDNDDTFCTLQAVHPAAPTRLSSAALPAEKDSFSSALDEIEELCPTSTSTEAAHTAAPEGPKGTSSESSVQKPEGPEEGRTDDSRFMDSLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSASGTASKMAPVSADDLLKTLAPYSNQPVAPSQPFKMDLTELDHIMEVLVGS", "length": 309 }, "evidence": [ { "id": "A0A9J7EXG7", "url": "https://omabrowser.org/oma/group/A0A9J7EXG7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GHF3-1", "protein_name": "SERTA domain containing 2", "gene_name": "SERTAD2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLGKGGKRKFDEHEDGLEGKVVSPTDGPSKVSYTLQRQTIFNISLMKLYNHRPLTEPSLQKTVLINNMLRRIQEELKQEGSLRPVFVTASQPADPLSDNFREAQPAFSHLASPSLLPTDLVSTTPLESCLTPASLLEDDTFCTSPTVQHDGPTKLPPPALQPVKDSFSSALDEIEELCPAPTSAEAVAVAAESAAGDSKAHPCESSVPKPEGVAESRTAESKLMEPLPGNFEITTSTGFLTDLTLDDILFADIDTSMYDFDPCTSAAGAASKMAPVSADELLKTLAPYSSQPVTPNQPFKMDLTELDHIMEVLVGS", "length": 316 }, "evidence": [ { "id": "A0A9J7EXG7", "url": "https://omabrowser.org/oma/group/A0A9J7EXG7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXG7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXG7", "url": 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"start_pos": 47, "end_pos": 94, "start_aa": "Tyr", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZB9-1", "uniprot_ac": "A0A9J7EZB9", "uniprot_id": "A0A9J7EZB9_CRIGR", "mass": { "chemical_mass": 63754.0, "monoisotopic_mass": 63754.0 }, "refseq": { "ac": "XP_007624042", "name": "AT-rich interactive domain-containing protein 5A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007624042" }, "gene_names": [ { "name": "Arid5a", "type": "recommended", "evidence": [ { "id": "A0A9J7EZB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9" } ] }, { "name": "Arid5a", "type": "synonym", "evidence": [ { "id": "XP_007624042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007624042" } ] } ], "protein_names": [ { "name": "AT-rich interactive domain-containing protein 5A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007624042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007624042" }, { "id": "A0A9J7EZB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613687.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007624042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007624042" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arid5a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZB9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZB9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16884", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16884", "database": "CDD", "categories": [ "Protein Classification" ] 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"Protein Classification" ] }, { "id": "G3H1S0", "url": "https://www.orthodb.org/?gene=G3H1S0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13964", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13964", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13964:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13964:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007624042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007624042", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H1S0", "url": "https://www.uniprot.org/uniprotkb/G3H1S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H1S0-1", "url": "https://www.uniprot.org/uniprotkb/G3H1S0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPPAKGKGEQSEEGDLLELPVSPKPDGEQSGSQSPIQLEDSPEAGEEREEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMTKELRGDDGTTEKSKKAKDSERQVDQTTLGKTKSDATGLTQLPSQAPSRNSMEQLGPTSGPSLPFMGASGCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPSKDLQESPQNLRGLAENSEHQLTPQEGLQAPSGSTKVEVQEGACPTVPTFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGLSAKEPQLVWGGDANRPSAFHKGSSRKRSFYPKPKACWVSPMAKVPAESPGATHPLPSSPGLGSKRNLEEEGFTHGGKKLRAVSPFLKEVDAKECGGKPAAPGVAVSCLLGPALAPTPPEAYRGTMLRCPLNFTSSSDPLKGQATLPFSPLVIPAFPAHLLATAGPSPMATSLMHFPPTCYDTALRNRLGPASSAWHVPPVTTYAAPHFFHLNTKL", "length": 589, "header": "tr|A0A9J7EZB9-1|A0A9J7EZB9_CRIGR Isoform 1 of AT-rich interactive domain-containing protein 5A isoform X1 OS=Cricetulus griseus OX=10029 GN=Arid5a PE=4 SV=1 CANONICAL=A0A9J7EZB9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9/entry", "sequence": { "sequence": "MAAPPAKGKGEQSEEGDLLELPVSPKPDGEQSGSQSPIQLEDSPEAGEEREEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMTKELRGDDGTTEKSKKAKDSERQVDQTTLGKTKSDATGLTQLPSQAPSRNSMEQLGPTSGPSLPFMGASGCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPSKDLQESPQNLRGLAENSEHQLTPQEGLQAPSGSTKVEVQEGACPTVPTFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGLSAKEPQLVWGGDANRPSAFHKGSSRKRSFYPKPKACWVSPMAKVPAESPGATHPLPSSPGLGSKRNLEEEGFTHGGKKLRAVSPFLKEVDAKECGGKPAAPGVAVSCLLGPALAPTPPEAYRGTMLRCPLNFTSSSDPLKGQATLPFSPLVIPAFPAHLLATAGPSPMATSLMHFPPTCYDTALRNRLGPASSAWHVPPVTTYAAPHFFHLNTKL", "length": 589, "header": "tr|A0A9J7EZB9-1|A0A9J7EZB9_CRIGR Isoform 1 of AT-rich interactive domain-containing protein 5A isoform X1 OS=Cricetulus griseus OX=10029 GN=Arid5a PE=4 SV=1 CANONICAL=A0A9J7EZB9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J3Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3Q7/entry", "sequence": { "sequence": "MTKELRGDDGTTEKSKKAKDSERQVDQTTLGKTKSDATGLTQLPSQAPSRNSMEQLGPTSGPSLPFMGASGCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPSKDLQESPQNLRGLAENSEHQLTPQEGLQAPSGSTKVEVQEGACPTVPTFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGLSAKEPQLVWGGDANRPSAFHKGSSRKRSFYPKPKACWVSPMAKVPAESPGATHPLPSSPGLGSKRNLEEEGFTHGGKKLRAVSPFLKEVDAKECGGKPAAPGVAVSCLLGPALAPTPPEAYRGTMLRCPLNFTSSSDPLKGQATLPFSPLVIPAFPAHLLATAGPSPMATSLMHFPPTCYDTALRNRLGPASSAWHVPPVTTYAAPHFFHLNTKL", "length": 430, "header": "tr|A0A9J7J3Q7-1|A0A9J7J3Q7_CRIGR Computationally mapped isoform of AT-rich interactive domain-containing protein 5A isoform X3 OS=Cricetulus griseus OX=10029 GN=Arid5a PE=4 SV=1 CANONICAL=A0A9J7EZB9-1" }, "locus": {} }, { "isoform_ac": "G3H1S0-1", "url": "https://www.uniprot.org/uniprotkb/G3H1S0/entry", "sequence": { "sequence": "MAPPAKGKGEQSEEGDLLELPVSPKPDGEQSGSQSPIQLEDSPEAGEEREEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMTKELRGDDGTTEKSKKAKDSERQVDQTTLGKTKSDATGLTQLPSQAPSRNSMEQLGPTSGPSLPFMGASGCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPSKDLQESPQNLRGLAENSEHQLTPQEGLQAPSGSTKVEVQEGACPTVPTFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGLSAKEPQLVWGGDANRPSAFHKGSSRKRSFYPKPKACWVSPMAKVPAESPGATHPLPSSPGLGSKRNLEEEGFTHGGKKLRAVSPFLKEVDAKECGGKPAAPGVAVSCLLGPALAPTPPEAYRGTMLRCPLNFTSSSDPLKGQATLPFSPLVIPAFPAHLLATAGPSPMATSLMHFPPTCYDTALRNRLGPASSAWHVPPVTTYAAPHFFHLNTKL", "length": 588, "header": "tr|G3H1S0-1|A0A9J7EZB9_CRIGR Computationally mapped isoform of AT-rich interactive domain-containing protein 5A isoform X1 OS=Cricetulus griseus OX=10029 GN=Arid5a PE=4 SV=1 CANONICAL=A0A9J7EZB9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 218, "start_aa": "Thr", "end_pos": 218, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr218", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 490, "start_aa": "Thr", "end_pos": 490, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr490", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H1S0", "url": "https://www.uniprot.org/uniprotkb/G3H1S0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H1S0", "url": "https://www.uniprot.org/uniprotkb/G3H1S0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773678", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773678", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EZB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZB9" }, { "id": "PS51011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ARID", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 142, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 218, 490 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 505, "end_pos": 507 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EY57-1", "uniprot_ac": "A0A9J7EY57", "uniprot_id": "A0A9J7EY57_CRIGR", "mass": { "chemical_mass": 83416.0, "monoisotopic_mass": 83416.0 }, "refseq": { "ac": "XP_027242350", "name": "F-box only protein 34 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242350" }, "gene_names": [ { "name": "Fbxo34", "type": "recommended", "evidence": [ { "id": "A0A9J7EY57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57" } ] }, { "name": "Fbxo34", "type": "synonym", "evidence": [ { "id": "XP_027242350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242350" } ] } ], "protein_names": [ { "name": "F-box only protein 34 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027242350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242350" }, { "id": "A0A9J7EY57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242350" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EY57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fbxo34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57", "locus": {} } ], "crossref": [ { "id": "A0A9J7EY57", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EY57", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755456", "url": "https://www.ncbi.nlm.nih.gov/gene/100755456", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755456", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755456", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EY57", "url": "https://www.orthodb.org/?gene=A0A9J7EY57", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H7B0", "url": "https://www.orthodb.org/?gene=G3H7B0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16271:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16271:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027242350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242350", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EY57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EY57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H7B0", "url": "https://www.uniprot.org/uniprotkb/G3H7B0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H7B0-1", "url": "https://www.uniprot.org/uniprotkb/G3H7B0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFGASVGLRRTALSSWSASVLGSESGLPTPHRAAAAPGQAPAGLKHRASVMHLKPYWKLQKRECPLEVSKDPLRTPVSHQNAISDEKGKVNYMKPTVFPSASLVKASCRKPFGILSPNVLCSMSGKSPVENSLNVKAKKNVPSATVHQSEEEGLPGSWAIVKPGNTKEKIAFFAAHQCSNRIGSMKIKSSWDIDGRATKRRKKSGDLKKAKVQLERMRETNSQCYQPEPFACGIEHCSVHYVSDSGDGIYTGRPLSVIQMVAFLEQRASALLASCAKNCTNSPAIVKITDQSRGVLPAPFSAPGTCEEPTEKGNPEAGRSQSEPVRVLDMVARLESECLKHQGQREPGTLSRNNSFRRNVGRVLLTNGAQASDQSGKGPADVPDTQVHPMQSVSVGEGLPTADHCSASDQAWDGMSQGCPSPAGVSSHMDSTQLEPGQQTAAKNCNRHDIEMTDEFDELSFSSHTCLQASELPTDAISCMSRALVPLTNHSPDQRKEPVCISITVCTIEKEQPSALDSLEEPLPGMLFFLSPGEDQQECSQLNEHTAQEASEARKPQDAAEGNSVCEEKDVSVEPFVSAVAVVESTLPVLEVASWKKQVSQDFLETRFKIQQLLEPQQYMVCLPHHIMVKIFRLLPTRSLAVLKCTCRYFKFIIEYYNIRPADSRWVRDPRYREDPCKQCKKKYVKGDVSLCRWHPKPYCQALPYGPGYWMCCHRSQKGFPGCKLGLHDNHWLPACHSFNRAIHKKSRGSETEEEY", "length": 757, "header": "tr|A0A9J7EY57-1|A0A9J7EY57_CRIGR Isoform 1 of F-box only protein 34 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fbxo34 PE=4 SV=1 CANONICAL=A0A9J7EY57-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EY57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57/entry", "sequence": { "sequence": "MGFGASVGLRRTALSSWSASVLGSESGLPTPHRAAAAPGQAPAGLKHRASVMHLKPYWKLQKRECPLEVSKDPLRTPVSHQNAISDEKGKVNYMKPTVFPSASLVKASCRKPFGILSPNVLCSMSGKSPVENSLNVKAKKNVPSATVHQSEEEGLPGSWAIVKPGNTKEKIAFFAAHQCSNRIGSMKIKSSWDIDGRATKRRKKSGDLKKAKVQLERMRETNSQCYQPEPFACGIEHCSVHYVSDSGDGIYTGRPLSVIQMVAFLEQRASALLASCAKNCTNSPAIVKITDQSRGVLPAPFSAPGTCEEPTEKGNPEAGRSQSEPVRVLDMVARLESECLKHQGQREPGTLSRNNSFRRNVGRVLLTNGAQASDQSGKGPADVPDTQVHPMQSVSVGEGLPTADHCSASDQAWDGMSQGCPSPAGVSSHMDSTQLEPGQQTAAKNCNRHDIEMTDEFDELSFSSHTCLQASELPTDAISCMSRALVPLTNHSPDQRKEPVCISITVCTIEKEQPSALDSLEEPLPGMLFFLSPGEDQQECSQLNEHTAQEASEARKPQDAAEGNSVCEEKDVSVEPFVSAVAVVESTLPVLEVASWKKQVSQDFLETRFKIQQLLEPQQYMVCLPHHIMVKIFRLLPTRSLAVLKCTCRYFKFIIEYYNIRPADSRWVRDPRYREDPCKQCKKKYVKGDVSLCRWHPKPYCQALPYGPGYWMCCHRSQKGFPGCKLGLHDNHWLPACHSFNRAIHKKSRGSETEEEY", "length": 757, "header": "tr|A0A9J7EY57-1|A0A9J7EY57_CRIGR Isoform 1 of F-box only protein 34 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fbxo34 PE=4 SV=1 CANONICAL=A0A9J7EY57-1" }, "locus": {} }, { "isoform_ac": "G3H7B0-1", "url": "https://www.uniprot.org/uniprotkb/G3H7B0/entry", "sequence": { "sequence": "MHLKPYWKLQKRECPLEVSKDPLRTPVSHQNAISDEKGKVNYMKPTVFPSASLVKASCRKPFGILSPNVLCSMSGKSPVENSLNVKAKKNVPSATVHQSEEEGLPGSWAIVKPGNTKEKIAFFAAHQCSNRIGSMKIKSSWDIDGRATKRRKKSGDLKKAKVQLERMRETNSQCYQPEPFACGIEHCSVHYVSDSGDGIYTGRPLSVIQMVAFLEQRASALLASCAKNCTNSPAIVKITDQSRGVLPAPFSAPGTCEEPTEKGNPEAGRSQSEPVRVLDMVARLESECLKHQGQREPGTLSRNNSFRRNVGRVLLTNGAQASDQSGKGPADVPDTQVHPMQSVSVGEGLPTADHCSASDQAWDGMSQGCPSPAGVSSHMDSTQLEPGQQTAAKNCNRHDIEMTDEFDELSFSSHTCLQASELPTDAISCMSRALVPLTNHSPDQRKEPVCISITVCTIEKEQPSALDSLEEPLPGMLFFLSPGEDQQECSQLNEHTAQEASEARKPQDAAEGNSVCEEKDVSVEPFVSAVAVVESTLPVLEVASWKKQVSQDFLETRFKIQQLLEPQQYMVCLPHHIMVKIFRLLPTRSLAVLKCTCRYFKFIIEYYNIRPADSRWVRDPRYREDPCKQCKKKYVKGDVSLCRWHPKPYCQALPYGPGYWMCCHRSQKGFPGCKLGLHDNHWLPACHSFNRAIHKKSRGSETEEEY", "length": 706, "header": "tr|G3H7B0-1|A0A9J7EY57_CRIGR Computationally mapped isoform of F-box only protein 34 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fbxo34 PE=4 SV=1 CANONICAL=A0A9J7EY57-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H7B0", "url": "https://www.uniprot.org/uniprotkb/G3H7B0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H7B0", "url": "https://www.uniprot.org/uniprotkb/G3H7B0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755456", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755456", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EY57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY57" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 618, "end_pos": 670, "start_aa": "Gln", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 279, "end_pos": 281 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 490, "end_pos": 492 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "O70524-1", "uniprot_ac": "O70524", "uniprot_id": "ZN330_CRIGR", "mass": { "chemical_mass": 35707.0, "monoisotopic_mass": 35707.0 }, "refseq": { "ac": "NP_001231227", "name": "zinc finger protein 330", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" }, "gene_names": [ { "name": "ZNF330", "type": "recommended", "evidence": [ { "id": "O70524", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70524" } ] }, { "name": "NOA36", "type": "synonym", "evidence": [ { "id": "NP_001231227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" }, { "id": "O70524", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70524" } ] }, { "name": "Noazfp", "type": "synonym", "evidence": [ { "id": "NP_001231227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" } ] }, { "name": "Zfp330", "type": "synonym", "evidence": [ { "id": "NP_001231227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" } ] }, { "name": "Znf330", "type": "synonym", "evidence": [ { "id": "NP_001231227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" } ] } ], "protein_names": [ { "name": "Zinc finger protein 330", "type": "recommended", "evidence": [ { "id": "O70524", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70524/entry#names_and_taxonomy" } ] }, { "name": "Nucleolar autoantigen 36", "type": "synonym", "evidence": [ { "id": "NP_001231227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" }, { "id": "O70524", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70524/entry#names_and_taxonomy" } ] }, { "name": "Nucleolar cysteine-rich protein", "type": "synonym", "evidence": [ { "id": "NP_001231227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" }, { "id": "O70524", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70524/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 330", "type": "synonym", "evidence": [ { "id": "NP_001231227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "O70524", "url": "https://www.uniprot.org/uniprotkb/O70524" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "ZNF330", "url": "https://www.uniprot.org/uniprotkb/O70524", "locus": {} } ], "crossref": [ { "id": "O70524", "url": "https://alphafold.ebi.ac.uk/entry/O70524", "database": "AlphaFoldDB", "categories": [] }, { "id": "100689256", "url": "https://www.ncbi.nlm.nih.gov/gene/100689256", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010531", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010531", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100689256", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689256", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "O70524", "url": "https://www.orthodb.org/?gene=O70524", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13214:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13214:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06524", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06524", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231227", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231227", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "O70524", "url": "https://www.uniprot.org/uniprotkb/O70524", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O70524-1", "url": "https://www.uniprot.org/uniprotkb/O70524-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKKKTGPRKKAENRREREKQLRASRSTVDLAKHPCNASMECDKCQRRQKNRAFCYFCNSVQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHACACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNRLGQHSCLRCKACFCDEHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQTGGEEGDGASGYDAYWKNLSSDEYADTGYHDDEEEDEAEDEEEEEDGKDSDAESSDLFTSLNLGRTYASGYAHYEEQEN", "length": 317, "header": "sp|O70524-1|ZN330_CRIGR Isoform 1 of Zinc finger protein 330 OS=Cricetulus griseus OX=10029 GN=ZNF330 PE=2 SV=1 CANONICAL=O70524-1" }, "isoforms": [ { "isoform_ac": "O70524-1", "url": "https://www.uniprot.org/uniprotkb/O70524/entry#O70524-1", "sequence": { "sequence": "MPKKKTGPRKKAENRREREKQLRASRSTVDLAKHPCNASMECDKCQRRQKNRAFCYFCNSVQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHACACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNRLGQHSCLRCKACFCDEHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQTGGEEGDGASGYDAYWKNLSSDEYADTGYHDDEEEDEAEDEEEEEDGKDSDAESSDLFTSLNLGRTYASGYAHYEEQEN", "length": 317, "header": "sp|O70524-1|ZN330_CRIGR Isoform 1 of Zinc finger protein 330 OS=Cricetulus griseus OX=10029 GN=ZNF330 PE=2 SV=1 CANONICAL=O70524-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 288, "end_pos": 288, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70524", "url": "https://www.uniprot.org/uniprotkb/O70524" } ], "site_lbl": "Ser288" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Molecular cloning of a zinc finger autoantigen transiently associated with interphase nucleolus and mitotic centromeres and midbodies. Orthologous proteins with nine CXXC motifs highly conserved from nematodes to humans.", "journal": "J. Biol. Chem.", "date": "1999", "authors": "Bolivar J, Diaz I, Iglesias C, Valdivia MM", "evidence": [ { "database": "UniProtKB", "id": "O70524", "url": "https://www.uniprot.org/uniprotkb/O70524" } ], "reference": [ { "type": "PubMed", "id": "10593942", "url": "https://glygen.org/publication/PubMed/10593942" } ] } ], "pathway": [ { "id": "cge:100689256", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689256", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "O70524", "url": "https://www.uniprot.org/uniprotkb/O70524" } ], "pmid": "" }, { "name": "chromosome, centromeric region", "id": "GO:0000775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000775", "evidence": [ { "database": "UniProtKB", "id": "O70524", "url": "https://www.uniprot.org/uniprotkb/O70524" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "O70524", "url": "https://www.uniprot.org/uniprotkb/O70524" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "O70524", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70524" } ], "ann_type": "Motif_Annotation", "uniprotkb_annotation": "Nuclear localization signal", "eco_id": "ECO_0000255", "start_pos": 3, "end_pos": 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"kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "P19890-1", "uniprot_ac": "P19890", "uniprot_id": "IAPP_CRIGR", "mass": { "chemical_mass": 3921.0, "monoisotopic_mass": 3921.0 }, "refseq": {}, "gene_names": [ { "name": "IAPP", "type": "recommended", "evidence": [ { "id": "P19890", "database": "UniProtKB", "url": 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"NP_001233753", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233753" } ] }, { "name": "arsenite-resistance protein", "type": "synonym", "evidence": [ { "id": "NP_001233753", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233753" } ] } ], "function": [ { "annotation": "Confers arsenite resistance.", "evidence": [ { "database": "UniProtKB", "id": "Q60435", "url": "https://www.uniprot.org/uniprotkb/Q60435#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "Q60435", "url": "https://www.uniprot.org/uniprotkb/Q60435" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "FAU", "url": "https://www.uniprot.org/uniprotkb/Q60435", "locus": {} } ], "crossref": [ { "id": "Q60435", "url": "https://alphafold.ebi.ac.uk/entry/Q60435", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01793", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01793", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100689400", "url": "https://www.ncbi.nlm.nih.gov/gene/100689400", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": 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Ubiquitin-like protein FUBI OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=2 CANONICAL=Q60435-1" }, "isoforms": [ { "isoform_ac": "Q60435-1", "url": "https://www.uniprot.org/uniprotkb/Q60435/entry#Q60435-1", "sequence": { "sequence": "MQLFVRAQGLHTLEVTGQETVAQIKAHVASLEGISPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGRMLGG", "length": 74, "header": "sp|Q60435-1|UBIM_CRIGR Isoform 1 of Ubiquitin-like protein FUBI OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=2 CANONICAL=Q60435-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Expression cloning for arsenite-resistance resulted in isolation of tumor-suppressor fau cDNA: possible involvement of the ubiquitin system in arsenic carcinogenesis.", "journal": "Carcinogenesis", "date": "1999", "authors": "Rossman TG, Wang Z", "evidence": [ { "database": "UniProtKB", "id": "Q60435", "url": "https://www.uniprot.org/uniprotkb/Q60435" } ], "reference": [ { "type": "PubMed", "id": 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800, "header": "sp|Q91Y26-1|NOC3L_CRIGR Isoform 1 of Nucleolar complex protein 3 homolog OS=Cricetulus griseus OX=10029 GN=NOC3L PE=2 SV=1 CANONICAL=Q91Y26-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100689254", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689254", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "Q91Y26", "url": "https://www.uniprot.org/uniprotkb/Q91Y26" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "Q91Y26", "url": "https://www.uniprot.org/uniprotkb/Q91Y26" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA replication initiation", "id": "GO:0006270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006270", "evidence": [ { "database": "UniProtKB", "id": "Q91Y26", "url": "https://www.uniprot.org/uniprotkb/Q91Y26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 640, "end_pos": 642, "annotation": "n_glycosylation_sequon" }, { "start_pos": 665, "end_pos": 667, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 640, "end_pos": 642 }, { "start_pos": 665, "end_pos": 667 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZ50-1", "uniprot_ac": "A0A9J7EZ50", "uniprot_id": "A0A9J7EZ50_CRIGR", "mass": { "chemical_mass": 104174.0, "monoisotopic_mass": 104174.0 }, "refseq": { "ac": "XP_003510917", "name": "testis-specific gene 10 protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510917" }, "gene_names": [ { "name": "Tsga10", "type": "recommended", "evidence": [ { "id": "A0A9J7EZ50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50" } ] }, { "name": "Tsga10", "type": "synonym", "evidence": [ { "id": "XP_003510917", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510917" } ] } ], "protein_names": [ { "name": "Testis-specific gene 10 protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7EZ50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50/entry#names_and_taxonomy" } ] }, { "name": "testis-specific gene 10 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003510917", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510917" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614980.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003510917.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510917", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510917" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tsga10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZ50", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZ50", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764195", "url": "https://www.ncbi.nlm.nih.gov/gene/100764195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764195", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764195", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DAKNEIH", "url": "https://omabrowser.org/oma/group/DAKNEIH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QJV8", "url": "https://www.orthodb.org/?gene=A0A8C2QJV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EY40", "url": "https://www.orthodb.org/?gene=A0A9J7EY40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EZ50", "url": "https://www.orthodb.org/?gene=A0A9J7EZ50", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J760", "url": "https://www.orthodb.org/?gene=A0A9J7J760", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20544", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20544", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20544:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20544:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003510917", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510917", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QJV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EY40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EY40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB47-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBS1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J760", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J760", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J760-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J760-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KC39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KC39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIEDLKQTNHDLEEYVRKLLDSKEVVSSQVNDLTNHNEHLCKELIKIDQLAEQLEKEKNFVVDTANKELEETKIELICQQNNITVLEDTIKRLKSIILDTEKAQNKSPSRLDSFVKTLEADRDYYKTEAQNLRKMIRNRSKSPRRPSPSSRGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 897, "header": "tr|A0A9J7EZ50-1|A0A9J7EZ50_CRIGR Isoform 1 of Testis-specific gene 10 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QJV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJV8/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIEDLKQTNHDLEEYVRKLLDSKEVVSSQVNDLTNHNEHLCKELIKIDQLAEQLEKEKNFVVDTANKELEETKIELICQQNNITVLEDTIKRLKSIILDTEKAQNKSPSRLDSFVKTLEADRDYYKTEAQNLRKMIRNRSKSPRRPSPSSRGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 892, "header": "tr|A0A8C2QJV8-1|A0A9J7EZ50_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EY40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY40/entry", "sequence": { "sequence": "MIRNRSKSPRRPSPSSRGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 697, "header": "tr|A0A9J7EY40-1|A0A9J7EY40_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X9 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYN2/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIEDLKQTNHDLEEYVRKLLDSKEVIELICQQNNITVLEDTIKRLKSIILDTEKAQNKSPSRLDSFVKTLEADRDYYKTEAQNLRKMIRNRSKSPRRPSPSSRGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 849, "header": "tr|A0A9J7EYN2-1|A0A9J7EYN2_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZ50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIEDLKQTNHDLEEYVRKLLDSKEVVSSQVNDLTNHNEHLCKELIKIDQLAEQLEKEKNFVVDTANKELEETKIELICQQNNITVLEDTIKRLKSIILDTEKAQNKSPSRLDSFVKTLEADRDYYKTEAQNLRKMIRNRSKSPRRPSPSSRGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 897, "header": "tr|A0A9J7EZ50-1|A0A9J7EZ50_CRIGR Isoform 1 of Testis-specific gene 10 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HB47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB47/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIEDLKQTNHDLEEYVRKLLDSKEVVSSQVNDLTNHNEHLCKELIKIDQLAEQLEKEKNFVVDTANKELEETKIELICQQNNITVLEDTIKRLKSIILDTEKAQNKSPSRLDSFVKTLEADRDYYKTEAQNLRKMIRNRSKSPRRPSPSSRGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 860, "header": "tr|A0A9J7HB47-1|A0A9J7HB47_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBS1/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIEDLKQTNHDLEEYVRKLLDSKEVIELICQQNNITVLEDTIKRLKSGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 793, "header": "tr|A0A9J7HBS1-1|A0A9J7HBS1_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HFB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB0/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIEDLKQTNHDLEEYVRKLLDSKEVVSSQVNDLTNHNEHLCKELIKIDQLAEQLEKEKNFVVDTANKELEETKIELICQQNNITVLEDTIKRLKSGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 841, "header": "tr|A0A9J7HFB0-1|A0A9J7HFB0_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J760-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J760/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIELICQQNNITVLEDTIKRLKSIILDTEKAQNKSPSRLDSFVKTLEADRDYYKTEAQNLRKMIRNRSKSPRRPSPSSRGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 825, "header": "tr|A0A9J7J760-1|A0A9J7J760_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KC39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC39/entry", "sequence": { "sequence": "MSSREDDGPGGRGRAPELQVEATEVTTKEHQFGLGAPVSEAGTNKNTLQLEQEVRTQDRFISTLKLQIELICQQNNITVLEDTIKRLKSGANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKTCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDALQEQFNKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQAEAENNNLKLELITAEAEVNRLKEKVDALNRELEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNVYHLSSVKPNSKCHSPDRAHHRSPDRGLDRSLEENLCYRDF", "length": 769, "header": "tr|A0A9J7KC39-1|A0A9J7KC39_CRIGR Computationally mapped isoform of Testis-specific gene 10 protein isoform X8 OS=Cricetulus griseus OX=10029 GN=Tsga10 PE=3 SV=1 CANONICAL=A0A9J7EZ50-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJV8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJV8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764195", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764195", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LY26-1", "protein_name": "Testis specific 10", "gene_name": "TSGA10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIRSRSKSPRRPSPSSRGTNCDVELLKTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKSCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHENDNLQEQFAKAKQENQALSKKLNDTHNELSDIKQKVQDTNLEVNKLKNILKSEESENRQMMDQLRKANEDAENWENKARQAEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIATLHKSVVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNAYHLSSTIKPNTKCHSPERTHHRSPDRGLDRSLEENLCYRDF", "length": 697 }, "evidence": [ { "id": "A0A9J7EZ50", "url": "https://omabrowser.org/oma/group/A0A9J7EZ50/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8M2B704-1", "protein_name": "Testis-specific gene 10 protein isoform X1", "gene_name": "tsga10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRPRRSTSPVKGASTHRSPVRHSPVKGGSFDSELMRVLRERDELQNMLDKHERHLSETQANVKVLTAERDKTRMHYQQAQEEIAALRREVMKSKAARGAKSCSVTAQSILKRVETERDEAISDLNRMTTERDSLRERLKISQETSISERAHLEQTLEDLQAAVLTLEQERGEQKCRHAQMRENMMGLEEEVHNLSRKLSASEEELIRCRNECCSLRLSNNQMESSLSENQRRLTNRIGELQNAQERNKTLDEMNDSLVRQVTVLREELNTQRATISQLDQQRNTLQEQMEKKSDLINTANHQLDENEKTIRSLKLRAEDLETTLIVLCSPSRALRDTISGKERELDVLKRKLSDSEKEMDTLMKVKDEASQENGQLRDDLDRAHQENQTLKFKLDEANLEIEDLQKKVQDHIADISRTEDLLSAKERECRELQESRRKESILVESWEDQARRAETTVIELRLELHNANSEILRLKERADSLENRLQQALSAERSCTSQLSQLNRKMIHMEEDLCQARAEHTQAQADLEKTRELCVKLDASKDAVQRELESCCSEIELLQKQLTSERLSVQTLESLLVSTREKELQRQLTSQERQTEIEILKDKLSMADSKANSQSREMAQLKTRSCQLEADLEMTKRHLSTERFERERAVQELRRQGLSAISPVLTSTMRSSSSSHRRSLSPHRSWSPEHSHLSTPDPLLLSHYPDRNLTFRDLHD", "length": 717 }, "evidence": [ { "id": "A0A9J7EZ50", "url": "https://omabrowser.org/oma/group/A0A9J7EZ50/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NY15-1", "protein_name": "Testis-specific gene 10 protein", "gene_name": "Tsga10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMRNRSKSPRRPSPTSRAANCDVELLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKSCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMANMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELGQIARERDILAHENDNLQEQFAKVKQENQALSKKLNDTHNELSDIKQKVQDTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQTEAENNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIATLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNAYNLGPMKPNTKCHSPERAHHRSPDRGLDRSLEENLCYRDF", "length": 697 }, "evidence": [ { "id": "A0A9J7EZ50", "url": "https://omabrowser.org/oma/group/A0A9J7EZ50/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BZW7-1", "protein_name": "Testis-specific gene 10 protein", "gene_name": "TSGA10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMRSRSKSPRRPSPTARGANCDVELLKTTTRDREELKCMLEKYERHLAEIQGNVKVLKSERDKIFLLYEQAQEEITRLRREMMKSCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETISTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGGTLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQCTEALIVCEQDVSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDAENWENKARQSEADNNTLKLELITAEAEGNRLKEKVDSLNREVEQHLNAERSYKSQISTLHKSVVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMRENELDSAHSEIELLRSQMANERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNAYHMSSTMKPNTKCHSPERAHHRSPDRGLDRSLEENLCYRDF", "length": 698 }, "evidence": [ { "id": "A0A9J7EZ50", "url": "https://omabrowser.org/oma/group/A0A9J7EZ50/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z220-1", "protein_name": "Testis-specific gene 10 protein", "gene_name": "Tsga10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMRNRSKSPRRPSPTSRAANCDVDLLKSTARDREELKCMLEKYERHLAEIQGNVKVLTSVRDKTFLLYEQAQEEIARLRREMMKSCQSPKSTTAHAILRRVETERDVAFTDLRRMTTARDSLRERLKIAQAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITIVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGATLNDLAKEKECLQTCLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELGQIARERDILAHENDNLQEQFAKVKQENQALSKKLNDTHNELSDIKQKVQDTNLEVNKLKNILKSEESTNLEVNKLKNILKSEESENRQIMEQLRKANEDAENWENKARQLEAENNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIATLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNAYHLGSMKPNTKCHSPERAHHRSPDRDLDRSLEENLCYRDF", "length": 712 }, "evidence": [ { "id": "A0A9J7EZ50", "url": "https://omabrowser.org/oma/group/A0A9J7EZ50/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50" } ], "pmid": "" }, { "name": "sperm fibrous sheath", "id": "GO:0035686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035686", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 576, "end_pos": 578, "annotation": "n_glycosylation_sequon" }, { "start_pos": 852, "end_pos": 854, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 }, { "start_pos": 171, "end_pos": 173 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 364, "end_pos": 366 }, { "start_pos": 400, "end_pos": 402 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 576, "end_pos": 578 }, { "start_pos": 852, "end_pos": 854 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245053", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245053" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYX8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762963", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX8", "locus": {} } ], "crossref": [ { "id": "A0A9J7EYX8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EYX8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03784", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03784", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762963", "url": "https://www.ncbi.nlm.nih.gov/gene/100762963", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762963", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762963", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYX8", "url": "https://www.orthodb.org/?gene=A0A9J7EYX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043:SF129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043:SF129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043:SF140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043:SF140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027245053", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245053", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "21032", "url": "https://www.rhea-db.org/rhea/21032", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A061IIP2", "url": "https://www.uniprot.org/uniprotkb/A0A061IIP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IIP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IIP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYX8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F166", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F166", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F166-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F166-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J591", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J591", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J591-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J591-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSNILLWSLQMSLLGISLGGNVLIWPMEGSHWLNIKTIIDELLRKEHNVTVLLASGALYITPSISPSLTFEIYPVPFGKEKIDSVIKDFVLTWLENRPSPSTIWKFYMEMAKVIEEFHIVSRGICDGVLKNEKLMAKLKKGKFEVLLSDPVFPCGDIIALKLGIPFMYSLRFSPASTVEKHCGKVPFPPSYVPAILSELTDQMSFTDRVRNFISYQMQDYMFETLWKSWDSYYSEALDGSHWLNIKTLLEELIRRNHSVTVLASSETLLIKSSTAAFVHFEEVPVSFTKSNIDEMIEHMIALWLDHRPTPLSMWTFYKELGKLFETFYQININLCDGVLNNTTLMAKLQNCGFNVLIADPTTTCGDLVALKLGIPFMYTLRYSPAFTVERHCGKIPAPVSYVPAALSELTDQMSFGERVKNTLSYYLQDYIFQSYWGRWNSYYSRVLGRPTTLCETMGKAEIWLMRTYWDFEFPRPYLPNFEFVGGLHCKPAKPLPKVLWRYKGKIPATLGSNTRLFDWIPQNDLLGHPKTRAFITHGGTNGIYEAIYHGIPMVGLPMFADQPDNIAHMKAKGAAVEVNMNTMESVDLLNALRTVINDPSYKENAMRLSRIHHDQPVKPLDRAVFWVEFVMRHKGAKHLRVAAHDLSWFQYHSLDVIGFLLACVASAIFLVAKSCLFVFQKFVKTGKKKKRD", "length": 693, "header": "tr|A0A9J7EYX8-1|A0A9J7EYX8_CRIGR Isoform 1 of UDP-glucuronosyltransferase 2A2 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100762963 PE=3 SV=1 CANONICAL=A0A9J7EYX8-1" }, "isoforms": [ { "isoform_ac": "A0A061IIP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IIP2/entry", "sequence": { "sequence": "MIKKFSQLLVFHLALTEIVFSGNVLIWPADGSHWLNIKTLLEELIRRNHSVTVLASSETLLIKSSTAAFVHFEEVPVSFTKSNIDEMIEHMIALWLDHRPTPLSMWTFYKELGKLFETFYQININLCDGVLNNTTLMAKLQNCGFNVLIADPTTTCGDLVALKLGIPFMYTLRYSPAFTVERHCGKIPAPVSYVPAALSELTDQMSFGERVKNTLSYYLQDYIFQSYWGRWNSYYSRVLGRPTTLCETMGKAEIWLMRTYWDFEFPRPYLPNFEFVGGLHCKPAKPLPKEMEEFVQSSGEHGIVVFSLGSMVKNLTEEKACLIASALAQIPQKVLWRYKGKIPATLGSNTRLFDWIPQNDLLGHPKTRAFITHGGTNGIYEAIYHGIPMVGLPMFADQPDNIAHMKAKGAAVEVNMNTMESVDLLNALRTVINDPSYKENAMRLSRIHHDQPVKPLDRAVFWVEFVMRHKGAKHLRVAAHDLSWFQYHSLDVIGFLLACVASAIFLVAKSCLFVFQKFVKTGKKKKRD", "length": 528, "header": "tr|A0A061IIP2-1|A0A061IIP2_CRIGR Computationally mapped isoform of UDP-glucuronosyltransferase OS=Cricetulus griseus OX=10029 GN=LOC100762963 PE=3 SV=1 CANONICAL=A0A9J7EYX8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX8/entry", "sequence": { "sequence": "MLSNILLWSLQMSLLGISLGGNVLIWPMEGSHWLNIKTIIDELLRKEHNVTVLLASGALYITPSISPSLTFEIYPVPFGKEKIDSVIKDFVLTWLENRPSPSTIWKFYMEMAKVIEEFHIVSRGICDGVLKNEKLMAKLKKGKFEVLLSDPVFPCGDIIALKLGIPFMYSLRFSPASTVEKHCGKVPFPPSYVPAILSELTDQMSFTDRVRNFISYQMQDYMFETLWKSWDSYYSEALDGSHWLNIKTLLEELIRRNHSVTVLASSETLLIKSSTAAFVHFEEVPVSFTKSNIDEMIEHMIALWLDHRPTPLSMWTFYKELGKLFETFYQININLCDGVLNNTTLMAKLQNCGFNVLIADPTTTCGDLVALKLGIPFMYTLRYSPAFTVERHCGKIPAPVSYVPAALSELTDQMSFGERVKNTLSYYLQDYIFQSYWGRWNSYYSRVLGRPTTLCETMGKAEIWLMRTYWDFEFPRPYLPNFEFVGGLHCKPAKPLPKVLWRYKGKIPATLGSNTRLFDWIPQNDLLGHPKTRAFITHGGTNGIYEAIYHGIPMVGLPMFADQPDNIAHMKAKGAAVEVNMNTMESVDLLNALRTVINDPSYKENAMRLSRIHHDQPVKPLDRAVFWVEFVMRHKGAKHLRVAAHDLSWFQYHSLDVIGFLLACVASAIFLVAKSCLFVFQKFVKTGKKKKRD", "length": 693, "header": "tr|A0A9J7EYX8-1|A0A9J7EYX8_CRIGR Isoform 1 of UDP-glucuronosyltransferase 2A2 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100762963 PE=3 SV=1 CANONICAL=A0A9J7EYX8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F166-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F166/entry", "sequence": { "sequence": "MLSNILLWSLQMSLLGISLGGNVLIWPMEGSHWLNIKTIIDELLRKEHNVTVLLASGALYITPSISPSLTFEIYPVPFGKEKIDSVIKDFVLTWLENRPSPSTIWKFYMEMAKVIEEFHIVSRGICDGVLKNEKLMAKLKKGKFEVLLSDPVFPCGDIIALKLGIPFMYSLRFSPASTVEKHCGKVPFPPSYVPAILSELTDQMSFTDRVRNFISYQMQDYMFETLWKSWDSYYSEALGRPTTLCETMGKAEIWLMRTYWDFEFPRPYLPNFEFVGGLHCKPAKPLPKVLWRYKGKIPATLGSNTRLFDWIPQNDLLGHPKTRAFITHGGTNGIYEAIYHGIPMVGLPMFADQPDNIAHMKAKGAAVEVNMNTMESVDLLNALRTVINDPSYKENAMRLSRIHHDQPVKPLDRAVFWVEFVMRHKGAKHLRVAAHDLSWFQYHSLDVIGFLLACVASAIFLVAKSCLFVFQKFVKTGKKKKRD", "length": 483, "header": "tr|A0A9J7F166-1|A0A9J7EYX8_CRIGR Computationally mapped isoform of UDP-glucuronosyltransferase 2A2 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100762963 PE=3 SV=1 CANONICAL=A0A9J7EYX8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J591-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J591/entry", "sequence": { "sequence": "MQVACYFSSGSCGNVLIWPADGSHWLNIKTLLEELIRRNHSVTVLASSETLLIKSSTAAFVHFEEVPVSFTKSNIDEMIEHMIALWLDHRPTPLSMWTFYKELGKLFETFYQININLCDGVLNNTTLMAKLQNCGFNVLIADPTTTCGDLVALKLGIPFMYTLRYSPAFTVERHCGKIPAPVSYVPAALSELTDQMSFGERVKNTLSYYLQDYIFQSYWGRWNSYYSRVLGRPTTLCETMGKAEIWLMRTYWDFEFPRPYLPNFEFVGGLHCKPAKPLPKEMEEFVQSSGEHGIVVFSLGSMVKNLTEEKACLIASALAQIPQKVLWRYKGKIPATLGSNTRLFDWIPQNDLLGHPKTRAFITHGGTNGIYEAIYHGIPMVGLPMFADQPDNIAHMKAKGAAVEVNMNTMESVDLLNALRTVINDPSYKENAMRLSRIHHDQPVKPLDRAVFWVEFVMRHKGAKHLRVAAHDLSWFQYHSLDVIGFLLACVASAIFLVAKSCLFVFQKFVKTGKKKKRD", "length": 519, "header": "tr|A0A9J7J591-1|A0A9J7J591_CRIGR Computationally mapped isoform of UDP-glucuronosyltransferase OS=Cricetulus griseus OX=10029 GN=LOC100762963 PE=3 SV=1 CANONICAL=A0A9J7EYX8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F166", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F166" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F166", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F166" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762963", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762963", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYX8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYX8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glucuronosyltransferase activity", "id": "GO:0015020", "url": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027244422.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244422", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244422" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0G5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH6orf15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G5", "locus": {} } ], "crossref": [ { "id": "A0A9J7F0G5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F0G5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754705", "url": "https://www.ncbi.nlm.nih.gov/gene/100754705", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754705", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754705", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0G5", "url": "https://www.orthodb.org/?gene=A0A9J7F0G5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15817:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15817:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15809", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15809", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244422", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244422", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IHE4", "url": "https://www.uniprot.org/uniprotkb/A0A061IHE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IHE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IHE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0G5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRELSKMQGLAGGSRAPLGLLLVCLSLPGLFARSIGAPEEKISPQAGKPSFDSLKLGTADLGQPQPKPDPANNELPRALPRLAESPPDGALPEEDSEELSQPSFWEGSPTESWFYEDPQPGMEAAAEDRLEQVLPETLPYLSRGSPGPVAFSATEASEDSEPDSSALRTEAEDFAQHPFWFLFRRLLPGFPWGILSPWGGGGAGTAWGRRPMPYPSGIWGSNSQLSGTGLVGNARYPPGSWGGIGWNPAGSWGGNGWNPAGSWGGNGWNPAGSWGGNGWNPAGSWGSNGWNRLPPGVRPPGPNRLPPRVRPPRPRLPPRVRPPRPNRPNRPIRLPPRVRPPGSSGNIPNPSFQ", "length": 353, "header": "tr|A0A9J7F0G5-1|A0A9J7F0G5_CRIGR Isoform 1 of Uncharacterized protein C6orf15 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH6orf15 PE=4 SV=1 CANONICAL=A0A9J7F0G5-1" }, "isoforms": [ { "isoform_ac": "A0A061IHE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IHE4/entry", "sequence": { "sequence": "MRELSKMQGLAGGSRAPLGLLLVCLSLPGLFARSIGAPEEKISPQAGKPSFDSLKLGTADLGQPQPKPDPANNELPRALPRLAESPPDGALPEEDSEELSQPSFWEGSPTESWFYEDPQPGMEAAAEDRLEQVLPETLPYLSRGSPGPVAFSATEASEDSEPDSSALRTEAEDFAQHPFWFLFRRSPTSWSQSASPESPTSSPPASPKSPTSSPQSPQSSHSASPKSPTSWFFWEHPKPQFPVSSPEASSGWVTRFPLLAPF", "length": 262, "header": "tr|A0A061IHE4-1|A0A9J7F0G5_CRIGR Computationally mapped isoform of Uncharacterized protein C6orf15 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH6orf15 PE=4 SV=1 CANONICAL=A0A9J7F0G5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G5/entry", "sequence": { "sequence": "MRELSKMQGLAGGSRAPLGLLLVCLSLPGLFARSIGAPEEKISPQAGKPSFDSLKLGTADLGQPQPKPDPANNELPRALPRLAESPPDGALPEEDSEELSQPSFWEGSPTESWFYEDPQPGMEAAAEDRLEQVLPETLPYLSRGSPGPVAFSATEASEDSEPDSSALRTEAEDFAQHPFWFLFRRLLPGFPWGILSPWGGGGAGTAWGRRPMPYPSGIWGSNSQLSGTGLVGNARYPPGSWGGIGWNPAGSWGGNGWNPAGSWGGNGWNPAGSWGGNGWNPAGSWGSNGWNRLPPGVRPPGPNRLPPRVRPPRPRLPPRVRPPRPNRPNRPIRLPPRVRPPGSSGNIPNPSFQ", "length": 353, "header": "tr|A0A9J7F0G5-1|A0A9J7F0G5_CRIGR Isoform 1 of Uncharacterized protein C6orf15 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH6orf15 PE=4 SV=1 CANONICAL=A0A9J7F0G5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IHE4", "url": "https://www.uniprot.org/uniprotkb/A0A061IHE4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IHE4", "url": "https://www.uniprot.org/uniprotkb/A0A061IHE4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754705", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754705", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0G5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0G5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"mass": { "chemical_mass": 95667.0, "monoisotopic_mass": 95667.0 }, "refseq": { "ac": "XP_027243115", "name": "coiled-coil domain-containing protein 157 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243115" }, "gene_names": [ { "name": "Ccdc157", "type": "recommended", "evidence": [ { "id": "A0A9J7EZC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8" } ] }, { "name": "Sec14l2", "type": "recommended", "evidence": [ { "id": "A0A9J7EZC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8" } ] }, { "name": "Ccdc157", "type": "synonym", "evidence": [ { "id": "XP_027243115", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243115" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 157 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7EZC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 157 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027243115", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243115" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243115", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243115" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc157", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754911", "url": "https://www.ncbi.nlm.nih.gov/gene/100754911", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100755200", "url": "https://www.ncbi.nlm.nih.gov/gene/100755200", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754911", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754911", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:100755200", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HCYDKVG", "url": "https://omabrowser.org/oma/group/HCYDKVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061IJ61", "url": "https://www.orthodb.org/?gene=A0A061IJ61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EZC8", "url": "https://www.orthodb.org/?gene=A0A9J7EZC8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23324", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324:SF90", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23324:SF90", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43696:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43696:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00650", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00650", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243115", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243115", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IJ61", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IJ61-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061ILN7", "url": "https://www.uniprot.org/uniprotkb/A0A061ILN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061ILN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061ILN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRWRRPREKPRKLVNTLPVTPPGRGALPTPPRGQGGALLRCHGSSLGAPLRVSRDHRSHWRSGGSSVSRPDTELRLRRRRQGWEGRLRPALYLNQESKSQKARHLHEPQISVLSPIGGHSRSLHLHGQTSVRAPGVVGMAHLLGSQACMDSLRKDLTDLQGTIVDVFSRAGPVRFPSWKFPDRVACDLDMVALLEHYDHVPGDPEFTQLSHAVLLELVIDRLLLLLQSCASYLENLSLEQMMPPTRAPGPCMSVGLTVRRFWSNLLRLGMLYQQAAPQKRANQGEIPIAKPTAKGEPSRSPECMTAKFIKPPSPVPGLPLICPGLQSIPVRVSIRGPPGTSEKTKSVYSQTIETALVPCDACTSVQGSLWEVGKVVISLCQSQNLPSSLGQFQKLVQDSMGLKPLPAATMSHWAAEQSKDLTRLNKHVGALTQLVGPLRAQLEDAEGQKDELRKQVDKLEQALRQEKGERQRQAEEAERSLAKCEHDRQQLLTETCDLKTKVATLEGDLKQQQKSMQATVAKAQQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGAGQQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDSLDQEREELRGSLDEAEARRAELEEQLQSLQNDREQGQCQIQAQQELLHSLHQEKQDLEQVTTDLQLTISELHLELEDLKERERLLVTFPDLHQHMEAQIQSSGNVTHDMEKQVQANDIRIQVLQEDNRRLQSMLTKIREVAQQGGLKMIPQGQLWSLPYKDTQGEVPPAQAQNTSPGPMGRRQSPVSRTSSTGRTPSGGPRASPPRQPWPSKSSLEDRTYSATCTQNPMRALARLRRKLSPNRGQAGSPYQPQERPT", "length": 856, "header": "tr|A0A9J7EZC8-1|A0A9J7EZC8_CRIGR Isoform 1 of Coiled-coil domain-containing protein 157 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc157 PE=4 SV=1 CANONICAL=A0A9J7EZC8-1" }, "isoforms": [ { "isoform_ac": "A0A061IJ61-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ61/entry", "sequence": { "sequence": "MSGRVGDLSPKQEEALAKFRENVQDVLPTLPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGRCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECAHQTTKLGKKIETITMIYDCEGLGLKHLWKPAVEAYGEFLSMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPEQLPVEYGGTMTDPDGNPKCKSKINYGGDIPKQYYVRDQVKQQYEHSVQISRASSHQVEYEILFPGCVLRWQFMSEGSDVGFGIFLKTKIGERQRAGEMTEVLPSQRYNSHMVPEDGTLTCSEPGIYVLRFDNTYSFIHAKKVSFTVEVLLPDKAAEEKMNQQGAVTPK", "length": 403, "header": "tr|A0A061IJ61-1|A0A9J7EZC8_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 157 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc157 PE=4 SV=1 CANONICAL=A0A9J7EZC8-1" }, "locus": {} }, { "isoform_ac": "A0A061ILN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061ILN7/entry", "sequence": { "sequence": "MAHLLGSQACMDSLRKDLTDLQGTIVDVFSRAGPVRFPSWKFPDRVACDLDMVALLEHYDHVPGDPEFTQLSHAVLLELVIDRLLLLLQSCASYLENLSLEQMMPPTRAPGPCMSVGLTVRRFWSNLLRLGMLYQQAAPQKRANQGEIPIAKPTAKGEPSRSPECMTAKFIKPPSPVPGLPLICPGLQSIPVRVSIRGPPGTSEKTKSVYSQTIETALVPCDACTSVQGSLWEVGKVVISLCQSQNLPSSLGQFQKLVQDSMGLKPLPAATMSHWAAEQSKDLTRLNKHVGALTQLVGPLRAQLEDAEGQKDELRKQVDKLEQALRQEKGERQRQAEEAERSLAKCEHDRQQLLTETCDLKTKVATLEGDLKQQQKSMQATVAKAQQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGAGQQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDSLDQEREELRGSLDEAEARRAELEEQLQSLQNDREQGQCQIQAQQELLHSLHQEKQDLEQVTTDLQLTISELHLELEDLKERERLLVTFPDLHQHMEAQIQSSGNVTHDMEKQVQANDIRIQVLQEDNRRLQSMLTKIREVAQQGGLKMIPQGQLWSLPYKDTQGEVPPAQAQNTSPGPMGRRQSPVSRTSSTGRTPSGGPRASPPRQPWPSKSSLEDRTYSATCTQNPMRALARLRRKLSPNRGQAGSPYQPQERPT", "length": 717, "header": "tr|A0A061ILN7-1|A0A9J7EZC8_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 157 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc157 PE=4 SV=1 CANONICAL=A0A9J7EZC8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYU0/entry", "sequence": { "sequence": "MKLTRTLSRSLMSRLLLLLQSCASYLENLSLEQMMPPTRAPGPCMSVGLTVRRFWSNLLRLGMLYQQAAPQKRANQGEIPIAKPTAKGEPSRSPECMTAKFIKPPSPVPGLPLICPGLQSIPVRVSIRGPPGTSEKTKSVYSQTIETALVPCDACTSVQGSLWEVGKVVISLCQSQNLPSSLGQFQKLVQDSMGLKPLPAATMSHWAAEQSKDLTRLNKHVGALTQLVGPLRAQLEDAEGQKDELRKQVDKLEQALRQEKGERQRQAEEAERSLAKCEHDRQQLLTETCDLKTKVATLEGDLKQQQKSMQATVAKAQQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGAGQQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDSLDQEREELRGSLDEAEARRAELEEQLQSLQNDREQGQCQIQAQQELLHSLHQEKQDLEQVTTDLQLTISELHLELEDLKERERLLVTFPDLHQHMEAQIQSSGNVTHDMEKQVQANDIRIQVLQEDNRRLQSMLTKIREVAQQGGLKMIPQGQLWSLPYKDTQGEVPPAQAQNTSPGPMGRRQSPVSRTSSTGRTPSGGPRASPPRQPWPSKSSLEDRTYSATCTQNPMRALARLRRKLSPNRGQAGSPYQPQERPT", "length": 648, "header": "tr|A0A9J7EYU0-1|A0A9J7EYU0_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 157 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccdc157 PE=4 SV=1 CANONICAL=A0A9J7EZC8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8/entry", "sequence": { "sequence": "MGRWRRPREKPRKLVNTLPVTPPGRGALPTPPRGQGGALLRCHGSSLGAPLRVSRDHRSHWRSGGSSVSRPDTELRLRRRRQGWEGRLRPALYLNQESKSQKARHLHEPQISVLSPIGGHSRSLHLHGQTSVRAPGVVGMAHLLGSQACMDSLRKDLTDLQGTIVDVFSRAGPVRFPSWKFPDRVACDLDMVALLEHYDHVPGDPEFTQLSHAVLLELVIDRLLLLLQSCASYLENLSLEQMMPPTRAPGPCMSVGLTVRRFWSNLLRLGMLYQQAAPQKRANQGEIPIAKPTAKGEPSRSPECMTAKFIKPPSPVPGLPLICPGLQSIPVRVSIRGPPGTSEKTKSVYSQTIETALVPCDACTSVQGSLWEVGKVVISLCQSQNLPSSLGQFQKLVQDSMGLKPLPAATMSHWAAEQSKDLTRLNKHVGALTQLVGPLRAQLEDAEGQKDELRKQVDKLEQALRQEKGERQRQAEEAERSLAKCEHDRQQLLTETCDLKTKVATLEGDLKQQQKSMQATVAKAQQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGAGQQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDSLDQEREELRGSLDEAEARRAELEEQLQSLQNDREQGQCQIQAQQELLHSLHQEKQDLEQVTTDLQLTISELHLELEDLKERERLLVTFPDLHQHMEAQIQSSGNVTHDMEKQVQANDIRIQVLQEDNRRLQSMLTKIREVAQQGGLKMIPQGQLWSLPYKDTQGEVPPAQAQNTSPGPMGRRQSPVSRTSSTGRTPSGGPRASPPRQPWPSKSSLEDRTYSATCTQNPMRALARLRRKLSPNRGQAGSPYQPQERPT", "length": 856, "header": "tr|A0A9J7EZC8-1|A0A9J7EZC8_CRIGR Isoform 1 of Coiled-coil domain-containing protein 157 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc157 PE=4 SV=1 CANONICAL=A0A9J7EZC8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 21, "start_aa": "Thr", "end_pos": 21, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr21", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 30, "start_aa": "Thr", "end_pos": 30, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr30", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJ61", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ61" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJ61", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ61" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754911", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754911", "resource": "KEGG Pathway" }, { "id": "cge:100755200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755200", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZRQ5-1", "protein_name": "SEC14 like lipid binding 2", "gene_name": "SEC14L2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRVGDLSPKQKEALAKFRENVQDVLPTLPNPDDHFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNILNWQPPEVIQQYLSGGLCGYDLDGCPVWYDVIGPLDAKGLLLSATKQDLLRTKMRDCELIQRECACQTEKTGKKIETVTLIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKINVLGANWKEVLLKYISPDQVPVEYGGTMTDPDGDPKCKSKINYGGDIPKKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGSDIGFGIFLKTKMGERQRAGEMTEVLASQRYNAHLVPEDGTLTCSNPGIYVLRFDNTYSFIHAKKVSFTVEVLLPDKASEEKMKQLGEATPK", "length": 403 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0AAA9SFN1-1", "protein_name": "SEC14 like lipid binding 2", "gene_name": "SEC14L2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGRVGDLSPKQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARNFNLQKSEAMLRKHVEFRKQKDIDNIMSWQPPEVVQQYLSGGMCGYDLEGSPIWYDIIGPLDAKGLLLSASKQDLFKTKMRDCELLLQECVRQTEKMGKKIEATTLIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFIVKAPKLFPVAYNLVKPFLSEDTRKKIQVLGANWKEVLLKYISPDQLPVEYGGTMTDPDGNPKCKSKINYGGDIPKKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGSDIGFGIFLKTKVGERQRAGEMREVLPSQRYNAHLVPEDGSLTCSDPGIYVLRFDNTYSFIHAKKVSFTVEVLLPDKASEEKMQQLGAVTPK", "length": 403 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A2BIR0-1", "protein_name": "SEC14-like lipid binding 8", "gene_name": "sec14l8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSGRVGDLSVKQAEALAQFREKVQDVLPQCPSQSDHFLLRWLRARNFNLQKSEAMLRKHIEFRKHMKVDTITTEWQVPEVIDKYLSGGMCGHDREGSPVWYDVIGPLDPKGLMHSASKQDLIKSKVRDCEILQKDCDRQSERLGRNIESITMVYDCEGLGMKHLYKPAIETYGEVLTMFEDNYPEGLKRLFVIKAPKLFPVAYNLVKHFLSEDTRRKVIVLGSNWQEVLQKYIDPEELPAYYGGKLTDPDGDPKCRTRITFGSEIPKSYYVRDSIKVDYEQSVSIGRGSSHQMEYELIAPNCALRWQFSCDGADIGFGVYLKKKMGERMKAGEMREIVPNQRYNAHLVPEDGSLTCPEPGVYVLRFDNTYSVFQSKTVKFTVEVLLPSQVNQSDN", "length": 395 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O76054-1", "protein_name": "SEC14-like protein 2", "gene_name": "SEC14L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGRVGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDKASEEKMKQLGAGTPK", "length": 403 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q55CK3-1", "protein_name": "Cellular retinaldehyde-binding/triple function domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSGFIKDLSQPQSEALNQFKEYLNKKETIVQIKSDIKNKLPTTTTTTTTTNTETEESSSSSSPSSKEEEKHLKIWNINLENDSKERDIILLKFLRAREFKIENSKQMLIDCLIWRKQNQVDDYEKIVNEAFPDYYKNIGTIFKTDKEGRPVMINHYHAINPDVIFKDGVDQFVRWKVQQMEIAIRDTLIPSQWEIEDLIVIHDYKDCSFFRMDPRIKQASNQTIQTLQNNYPEFLARKFFINIPWLMEKLFSIFTVFTSERTKSKFIICSGNYREKLLKYIEADSIAPKLSGFEDNQSPILNIKIKPQKSHSIQLGKLDADKTIEWEFCTNEIDSEIGAKILIEPNNQPTTSNDILYFNNNSNNNNNNNNSPTPSNSNYPFNCFLSIEPREFNSGSIQIEDDSYYTLVFNNHLNKQCDLFYRITIKSKTTHSSTTTSTIETLGN", "length": 444 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q99J08-1", "protein_name": "SEC14-like protein 2", "gene_name": "Sec14l2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGRVGDLSPKQEEALAKFRENVQDVLPTLPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDKIISWQPPEVIQQYLSGGRCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECIQQTTKLGKKIETITMIYDCEGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRRKIMVLGANWKEVLLKHISPDQLPVEYGGTMTDPDGNPKCKSKINYGGDIPKQYYVRDQVKQQYEHTVQVSRGSSHQVEYEILFPGCVLRWQFMSEGSDVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHMVPEDGTLTCSEPGIYVLRFDNTYSFIHAKKVSFTVEVLLPDKAAEEKMNQQGADTPK", "length": 403 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99MS0-1", "protein_name": "SEC14-like protein 2", "gene_name": "Sec14l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGRVGDLSPKQEEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDKIISWQPPEVIQQYLSGGRCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECTQQTAKLGKKIETITMIYDCEGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQLPVEYGGTMTDPDGNPKCKSKINYGGDIPKQYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSEGSDVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHMVPEDGTLTCSEPGIYVLRFDNTYSFIHAKKVSFTVEVLLPDKAAEEKLNQQGAVTPK", "length": 403 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9SCU1-1", "protein_name": "Patellin-6", "gene_name": "PATL6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDASLSPFDHQKTQNTEPKKSFITSLITLRSNNIKEDTYFVSELKPTEQKSLQELKEKLSASSSKASSMWGVSLLGGDDKADVILLKFLRARDFKVADSLRMLEKCLEWREEFKAEKLTEEDLGFKDLEGKVAYMRGYDKEGHPVCYNAYGVFKEKEMYERVFGDEEKLNKFLRWRVQVLERGVKMLHFKPGGVNSIIQVTDLKDMPKRELRVASNQILSLFQDNYPELVATKIFINVPWYFSVIYSMFSPFLTQRTKSKFVMSKEGNAAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPKPASEFSIKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDEAVCNSFTTVEAGKLILSVDNTLSRKKKVAAYRYTVRKSTTTV", "length": 409 }, "evidence": [ { "id": "A0A9J7EZC8", "url": "https://omabrowser.org/oma/group/A0A9J7EZC8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 703, "end_pos": 705, "annotation": "n_glycosylation_sequon" }, { "start_pos": 772, "end_pos": 774, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 21, 30 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 236, "end_pos": 238 }, { "start_pos": 703, "end_pos": 705 }, { "start_pos": 772, "end_pos": 774 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245709" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ica1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6", "locus": {} } ], "crossref": [ { "id": "cd07661", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07661", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759520", "url": "https://www.ncbi.nlm.nih.gov/gene/100759520", "database": "GeneID", "categories": [ "Genome 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"categories": [ "Protein" ] }, { "id": "A0A061IN91", "url": "https://www.uniprot.org/uniprotkb/A0A061IN91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IN91-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IN91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EXF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EXF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F211", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F211", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F211-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F211-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGHKCSYSWELQDRFAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEGKKSPPKKENPEAVAQEPKQLISLEDENQHKESSTCKEVLNSNASVARSCTSKHSPPHTARPSWNEARSQQEKQMGATAPISNCSKVAEDGKSILPSVDKSSATDACSGPIGELLDMKPKEACLGPIAGTPEPEGGDKDDLLLLNEIFSASCLDEGEFSREWAAVFGDDRLKEPAPVGAQGEPDPKPQLGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA", "length": 532, "header": "tr|A0A9J7EXF6-1|A0A9J7EXF6_CRIGR Isoform 1 of Islet cell autoantigen 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ica1 PE=4 SV=1 CANONICAL=A0A9J7EXF6-1" }, "isoforms": [ { "isoform_ac": "A0A061IJT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IJT5/entry", "sequence": { "sequence": "MSGHKCYSWELQDRFAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEGKKSPPKKENPEAVAQEPKQLISLEDENQHKESSTCKEVLNSNASVARSCTSKHSPPHTARPSWNEARSQQEKQMGATAPISNCSKVAEDGKSILPSVDKSSATDACSGPIGELLDMKPKEACLGPIAGTPEPEGGDKDDLLLLNEIFSASCLDEGEFSREWAAVFGDDRLKEPAPVGAQGEPDPKPQLGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA", "length": 531, "header": "tr|A0A061IJT5-1|A0A9J7EXF6_CRIGR Computationally mapped isoform of Islet cell autoantigen 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ica1 PE=4 SV=1 CANONICAL=A0A9J7EXF6-1" }, "locus": {} }, { "isoform_ac": "A0A061IN91-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IN91/entry", "sequence": { "sequence": "MSGHKCYSWELQDRFAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEGKKSPPKKENPEAVAQEPKQLISLEDENQHKESSTCKAEDGKSILPSVDKSSATDACSGPIGELLDMKPKEACLGPIAGTPEPEGGDKDDLLLLNEIFSASCLDEGEFSREWAAVFGDDRLKEPAPVGAQGEPDPKPQLGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA", "length": 481, "header": "tr|A0A061IN91-1|A0A061IN91_CRIGR Computationally mapped isoform of Islet cell autoantigen 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ica1 PE=4 SV=1 CANONICAL=A0A9J7EXF6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EXF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6/entry", "sequence": { "sequence": "MSGHKCSYSWELQDRFAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEGKKSPPKKENPEAVAQEPKQLISLEDENQHKESSTCKEVLNSNASVARSCTSKHSPPHTARPSWNEARSQQEKQMGATAPISNCSKVAEDGKSILPSVDKSSATDACSGPIGELLDMKPKEACLGPIAGTPEPEGGDKDDLLLLNEIFSASCLDEGEFSREWAAVFGDDRLKEPAPVGAQGEPDPKPQLGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA", "length": 532, "header": "tr|A0A9J7EXF6-1|A0A9J7EXF6_CRIGR Isoform 1 of Islet cell autoantigen 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ica1 PE=4 SV=1 CANONICAL=A0A9J7EXF6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F211-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F211/entry", "sequence": { "sequence": "MSGHKCSYSWELQDRFAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEGKKSPPKKENPEAVAQEPKQLISLEDENQHKESSTCKAEDGKSILPSVDKSSATDACSGPIGELLDMKPKEACLGPIAGTPEPEGGDKDDLLLLNEIFSASCLDEGEFSREWAAVFGDDRLKEPAPVGAQGEPDPKPQLGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA", "length": 482, "header": "tr|A0A9J7F211-1|A0A9J7F211_CRIGR Computationally mapped isoform of Islet cell autoantigen 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ica1 PE=4 SV=1 CANONICAL=A0A9J7EXF6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJT5", "url": "https://www.uniprot.org/uniprotkb/A0A061IJT5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJT5", "url": "https://www.uniprot.org/uniprotkb/A0A061IJT5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759520", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759520", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6" } ], "pmid": "" }, { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6" } ], "pmid": "" }, { "name": "secretory granule membrane", "id": "GO:0030667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030667", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXF6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243704", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243704" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F026", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F026" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ntan1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F026", "locus": {} } ], "crossref": [ { "id": "A0A9J7F026", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F026", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772842", "url": "https://www.ncbi.nlm.nih.gov/gene/100772842", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026750", 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mapped isoform of Protein N-terminal asparagine amidohydrolase isoform X4 OS=Cricetulus griseus OX=10029 GN=Ntan1 PE=4 SV=1 CANONICAL=A0A9J7F026-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F026-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F026/entry", "sequence": { "sequence": "MGGSGQGGEGRGGRLPRPGSGLGNAAAGGRAASTAAPLRCRAGPRAPVAGGERTQARGAGGVPGDRRRRGPERERARLLRGQSVQQVGPQGLLYVQQRELAVTTPKDGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTKAEVPLIMSAIKSFSDHTECGRLEVHLVGGFSDDRQLSQKLTHQLLSEFDKQDDDIHLVTLCVTELNDREENENHFPIIYGIAVNIKTAEIYRASFQDHGPEEQLRAARALAGGPNLSTSPLAEPPHFVEHIRSTLMFLKRFPSPANILFPGNKALLYKKNEDGLWEKISPGN", "length": 317, "header": "tr|A0A9J7F026-1|A0A9J7F026_CRIGR Isoform 1 of Protein N-terminal asparagine amidohydrolase isoform X2 OS=Cricetulus griseus OX=10029 GN=Ntan1 PE=4 SV=1 CANONICAL=A0A9J7F026-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M6/entry", "sequence": { "sequence": "MSAIKSFSDHTECGRLEVHLVGGFSDDRQLSQKLTHQLLSEFDKQDDDIHLVTLCVTELNDREENENHFPIIYGIAVNIKTAEIYRASFQDHGPEEQLRAARALAGGPMISIYDAKTEQLRIGPYSWTPFPHVDFWLQQDDKQILENLSTSPLAEPPHFVEHIRSTLMFLKRFPSPANILFPGNKALLYKKNEDGLWEKISPGN", "length": 204, "header": "tr|A0A9J7F0M6-1|A0A9J7F0M6_CRIGR Computationally mapped isoform of Protein N-terminal asparagine amidohydrolase isoform X1 OS=Cricetulus griseus OX=10029 GN=Ntan1 PE=4 SV=1 CANONICAL=A0A9J7F026-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 260, "end_pos": 262 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EYG3-1", "uniprot_ac": "A0A9J7EYG3", "uniprot_id": "A0A9J7EYG3_CRIGR", "mass": { "chemical_mass": 153041.0, "monoisotopic_mass": 153041.0 }, "refseq": { "ac": "XP_027244699", "name": "PH and SEC7 domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244699" }, "gene_names": [ { "name": "Psd3", "type": "recommended", "evidence": [ { "id": "A0A9J7EYG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" } ] }, { "name": "Psd3", "type": "synonym", "evidence": [ { "id": "XP_027244699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244699" } ] } ], "protein_names": [ { "name": "PH and SEC7 domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027244699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244699" }, { "id": "A0A9J7EYG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244699" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Psd3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3", "locus": {} } ], "crossref": [ { "id": "cd00171", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00171", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13295", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13295", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754008", "url": "https://www.ncbi.nlm.nih.gov/gene/100754008", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754008", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754008", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYG3", "url": "https://www.orthodb.org/?gene=A0A9J7EYG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663:SF337", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663:SF337", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01369", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01369", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244699", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LD04", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LD04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LD04-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LD04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0S8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0S8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1T1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1T1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H837", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H837", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H837-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H837-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC32-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J2J3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J2J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2J3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSSLAAGETVGAESCLPTAAEALRSKTRAKTSPAPLEEMAEQPQQQHMKTSFLFIQLQPPPTRATLTLPAPSPATAASRAAPGGLEEGHIFPSSRTGFLACWDLRYTQDLATTPLSLLPAESPGTQTPAVFNCYSLKEKKEETEKLQNLDVRRGGVCRSPHSRRCLAPASRKLGQPQGLPCRLASPTPTMNDGNSSPSMGWKHWPVISAHKDLRGMDPQARNAIELSGPQSTPSYSADSGKWAIQRRGTATQEVLRKNCEEETGTTVLATRARLFRYCPMIRISQSCPAPPAAVPLKTLPLIVDVVSCITILFSASLDHPSQHASSWGPPPPSSLGVPLSRQAETFVWVNNASAHSQSVAKAKYEFLFGKSEDKTPDTSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKESHGNQRCREVKFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1389, "header": "tr|A0A9J7EYG3-1|A0A9J7EYG3_CRIGR Isoform 1 of PH and SEC7 domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LD04-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LD04/entry", "sequence": { "sequence": "MIGVNSVQSASKVRVRTSGSVKYSREDSIRRQSHRSKSMKISNSSEFSAKETKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 376, "header": "tr|A0A8C2LD04-1|A0A9J7EYG3_CRIGR Computationally mapped isoform of PH and SEC7 domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3/entry", "sequence": { "sequence": "MNSSLAAGETVGAESCLPTAAEALRSKTRAKTSPAPLEEMAEQPQQQHMKTSFLFIQLQPPPTRATLTLPAPSPATAASRAAPGGLEEGHIFPSSRTGFLACWDLRYTQDLATTPLSLLPAESPGTQTPAVFNCYSLKEKKEETEKLQNLDVRRGGVCRSPHSRRCLAPASRKLGQPQGLPCRLASPTPTMNDGNSSPSMGWKHWPVISAHKDLRGMDPQARNAIELSGPQSTPSYSADSGKWAIQRRGTATQEVLRKNCEEETGTTVLATRARLFRYCPMIRISQSCPAPPAAVPLKTLPLIVDVVSCITILFSASLDHPSQHASSWGPPPPSSLGVPLSRQAETFVWVNNASAHSQSVAKAKYEFLFGKSEDKTPDTSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKESHGNQRCREVKFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1389, "header": "tr|A0A9J7EYG3-1|A0A9J7EYG3_CRIGR Isoform 1 of PH and SEC7 domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0S8/entry", "sequence": { "sequence": "MAEQPQQQHMKTSFLFIQLQPPPTRATLTLPAPSPATAASRAAPGGLEEGHIFPSSRTGFLACWDLRYTQDLATTPLSLLPAESPGTQTPAVFNCYSLKEKKEETEKLQNLDVRRGGVCRSPHSRRCLAPASRKLGQPQGLPCRLASPTPTMNDGNSSPSMGWKHWPVISAHKDLRGMDPQARNAIELSGPQSTPSYSADSGKWAIQRRGTATQEVLRKNCEEETGTTVLATRARLFRYCPMIRISQSCPAPPAAVPLKTLPLIVDVVSCITILFSASLDHPSQHASSWGPPPPSSLGVPLSRQAETFVWVNNASAHSQSVAKAKYEFLFGKSEDKTPDTSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKESHGNQRCREVKFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1350, "header": "tr|A0A9J7F0S8-1|A0A9J7F0S8_CRIGR Computationally mapped isoform of PH and SEC7 domain-containing protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1T1/entry", "sequence": { "sequence": "MNSSLAAGETVGAESCLPTAAEALRSKTRAKTSPAPLEEMAEQPQQQHMKTSFLFIQLQPPPTRATLTLPAPSPATAASRAAPGGLEEGHIFPSSRTGFLACWDLRYTQDLATTPLSLLPAESPGTQTPAVFNCYSLKEKKEETEKLQNLDVRRGGVCRSPHSRRCLAPASRKLGQPQGLPCRLASPTPTMNDGNSSPSMGWKHWPVISAHKDLRGMDPQARNAIELSGPQSTPSYSADSGKWAIQRRGTATQEVLRKNCEEETGTTVLATRARLFRYCPMIRISQSCPAPPAAVPLKTLPLIVDVVSCITILFSASLDHPSQHASSWGPPPPSSLGVPLSRQAETFVWVNNASAHSQSVAKAKYEFLFGKSEDKTPDTSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKERFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1379, "header": "tr|A0A9J7F1T1-1|A0A9J7F1T1_CRIGR Computationally mapped isoform of PH and SEC7 domain-containing protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H837-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H837/entry", "sequence": { "sequence": "MALAAGETVGAESCLPTAAEALRSKTRAKTSPAPLEEMAEQPQQQHMKTSFLFIQLQPPPTRATLTLPAPSPATAASRAAPGGLEEGHIFPSSRTGFLACWDLRYTQDLATTPLSLLPAESPGTQTPAVFNCYSLKEKKEETEKLQNLDVRRGGVCRSPHSRRCLAPASRKLGQPQGLPCRLASPTPTMNDGNSSPSMGWKHWPVISAHKDLRGMDPQARNAIELSGPQSTPSYSADSGKWAIQRRGTATQEVLRKNCEEETGTTVLATRARLFRYCPMIRISQSCPAPPAAVPLKTLPLIVDVVSCITILFSASLDHPSQHASSWGPPPPSSLGVPLSRQAETFVWVNNASAHSQSVAKAKYEFLFGKSEDKTPDTSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKESHGNQRCREVKFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1387, "header": "tr|A0A9J7H837-1|A0A9J7H837_CRIGR Computationally mapped isoform of PH and SEC7 domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HB85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB85/entry", "sequence": { "sequence": "MEGRNAAAETFVWVNNASAHSQSVAKAKYEFLFGKSEDKTPDTSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKESHGNQRCREVKFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1053, "header": "tr|A0A9J7HB85-1|A0A9J7HB85_CRIGR Computationally mapped isoform of PH and SEC7 domain-containing protein 3 isoform X8 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC32-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC32/entry", "sequence": { "sequence": "MEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKESHGNQRCREVKFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 988, "header": "tr|A0A9J7HC32-1|A0A9J7HC32_CRIGR Computationally mapped isoform of PH and SEC7 domain-containing protein 3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J2J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2J3/entry", "sequence": { "sequence": "MNSSLAAGETVGAESCLPTAAEALRSKTRAKTSPAPLEEMAEQPQQQHMKTSFLFIQLQPPPTRATLTLPAPSPATAASRAAPGGLEEGHIFPSSRTGFLACWDLRYTQDLATTPLSLLPAESPGTQTPAVFNCYSLKEKKEETEKLQNLDVRRGGVCRSPHSRRCLAPASRKLGQPQGLPCRLASPTPTMNDGNSSPSMGWKHWPVISAHKDLRGMDPQARNAIELSGPQSTPSYSADSGKWAIQRRGTATQEVLRKNCEEETGTTVLATRARLFRYCPMIRISQSCPAPPAAVPLKAETFVWVNNASAHSQSVAKAKYEFLFGKSEDKTPDTSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDTKSLPCRPLEQQAVHLLAGQDSMLSSVTEGPNDASQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDAKFSVQPVNKELSTAGHKPQRTHRTFPAGRESPDLPLSVEVSTDRNFSLNIQEDLTALLPEEAQAELSQITNYRRQGPLCVQEPVCPVSSLRTSIGSHNPVDRAGVLKDQRSDLGREHPRGCDSGGFMGRQGRIKHVEFQGVEILWTGEKAESQHPIDVETSPARTASPVSKGFAKGPSHYSSAAGLCSNSVNLTGSVWDETWKVPSAKPGVSLGTLSPVPLGESGEDEVFLRESKEHLEENLDLQGDKESHGNQRCREVKFLEQEEHLRGGDDDILGTGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIREGGQFLERTSVEGHQDVLSVSADGGIMMGYSTGIINGLHDSATSIYTKGPQEITFWGSGSHSHAEVKTRPDAHSEMGSTEILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTITSQDGVHCLTCAMMLLNTDLHGHNIGKKMTCQEFITNLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWISKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLDFEKTRYEIYVNILKEGGKELLSTEGNEAVGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1344, "header": "tr|A0A9J7J2J3-1|A0A9J7J2J3_CRIGR Computationally mapped isoform of PH and SEC7 domain-containing protein 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Psd3 PE=4 SV=1 CANONICAL=A0A9J7EYG3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 188, "start_aa": "Thr", "end_pos": 188, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr188", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 233, "start_aa": "Thr", "end_pos": 233, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr233", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LD04", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LD04" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LD04", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LD04" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754008", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754008", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of ARF protein signal transduction", "id": "GO:0032012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032012", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1099, "end_pos": 1101, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1370, "end_pos": 1372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" }, { "start_pos": 684, "end_pos": 686, "annotation": "n_glycosylation_sequon" }, { "start_pos": 790, "end_pos": 792, "annotation": "n_glycosylation_sequon" }, { "start_pos": 918, "end_pos": 920, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EYG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 1126, "end_pos": 1239, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7EYG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYG3" }, { "id": "PS50190", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50190" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SEC7", "eco_id": "ECO_0000259", "start_pos": 901, "end_pos": 1075, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 188, 233 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1099, "end_pos": 1101 }, { "start_pos": 1370, "end_pos": 1372 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 2, "end_pos": 4 }, { "start_pos": 352, "end_pos": 354 }, { "start_pos": 537, "end_pos": 539 }, { "start_pos": 684, "end_pos": 686 }, { "start_pos": 790, "end_pos": 792 }, { "start_pos": 918, "end_pos": 920 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", 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This record is derived from a genomic sequence (NW_003613652.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497583" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3K0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3K0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem209", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3K0", "locus": {} } ], "crossref": [ { "id": "A0A9J7F3K0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F3K0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755824", "url": "https://www.ncbi.nlm.nih.gov/gene/100755824", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019176", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019176", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755824", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755824", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LGA6", "url": "https://www.orthodb.org/?gene=A0A8C2LGA6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F3K0", "url": "https://www.orthodb.org/?gene=A0A9J7F3K0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21780", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21780", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21780:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21780:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09786", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09786", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497583", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LGA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LGA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3K0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3K0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWPEGLPLVVEGKRDSRRMAKVCCEMQEVSPSASLIDRTIKMRKETETRKVVLAWGLLNVSMAGMIYTEMTGKLISTYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQALLGLKTAVVQTTPPRDLAATQVPPSPPSPSIQGQSVLSYSPSRSPSPSPKFAASCMTGYSPQLQGLSSGGSGSYSPAVTYSPVSGYNKLASFSLSPPSPYPTTVGPVESSGLRSRYRSSPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVKAPLIPTLNAIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRRWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCIYQSAVNPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 584, "header": "tr|A0A9J7F3K0-1|A0A9J7F3K0_CRIGR Isoform 1 of Transmembrane protein 209 OS=Cricetulus griseus OX=10029 GN=Tmem209 PE=4 SV=1 CANONICAL=A0A9J7F3K0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LGA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGA6/entry", "sequence": { "sequence": "MMQEVSPSASLIDRTIKMRKETETRKVVLAWGLLNVSMAGMIYTEMTGKLISTYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQALLGLKTAVVQTTPPRDLAATQVPPSPPSPSIQGQSVLSYSPSRSPSPSPKFAASCMTGYSPQLQGLSSGGSGSYSPAVTYSPVSGYNKLASFSLSPPSPYPTTVGPVESSGLRSRYRSSPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVKAPLIPTLNAIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRRWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCIYQSAVNPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 560, "header": "tr|A0A8C2LGA6-1|A0A9J7F3K0_CRIGR Computationally mapped isoform of Transmembrane protein 209 OS=Cricetulus griseus OX=10029 GN=Tmem209 PE=4 SV=1 CANONICAL=A0A9J7F3K0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3K0/entry", "sequence": { "sequence": "MWPEGLPLVVEGKRDSRRMAKVCCEMQEVSPSASLIDRTIKMRKETETRKVVLAWGLLNVSMAGMIYTEMTGKLISTYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQALLGLKTAVVQTTPPRDLAATQVPPSPPSPSIQGQSVLSYSPSRSPSPSPKFAASCMTGYSPQLQGLSSGGSGSYSPAVTYSPVSGYNKLASFSLSPPSPYPTTVGPVESSGLRSRYRSSPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVKAPLIPTLNAIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRRWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCIYQSAVNPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 584, "header": "tr|A0A9J7F3K0-1|A0A9J7F3K0_CRIGR Isoform 1 of Transmembrane protein 209 OS=Cricetulus griseus OX=10029 GN=Tmem209 PE=4 SV=1 CANONICAL=A0A9J7F3K0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LGA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGA6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LGA6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGA6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755824", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755824", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3K0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3K0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 297, "end_pos": 299 }, { "start_pos": 367, "end_pos": 369 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A9J7EYH7-1", "uniprot_ac": "A0A9J7EYH7", "uniprot_id": "A0A9J7EYH7_CRIGR", "mass": { "chemical_mass": 160601.0, "monoisotopic_mass": 160601.0 }, "refseq": { "ac": "XP_027239876", "name": "uncharacterized protein KIAA0232 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239876" }, "gene_names": [ { "name": "Kiaa0232", "type": "recommended", "evidence": [ { "id": "A0A9J7EYH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYH7" } ] }, { "name": "Kiaa0232", "type": "synonym", "evidence": [ { "id": "XP_027239876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239876" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA0232 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7EYH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYH7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA0232 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027239876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239876" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613629.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027239876", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239876" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYH7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa0232", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYH7", "locus": {} } ], "crossref": [ { "id": "100769248", "url": "https://www.ncbi.nlm.nih.gov/gene/100769248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769248", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769248", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EWALVPP", "url": "https://omabrowser.org/oma/group/EWALVPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LHU9", "url": "https://www.orthodb.org/?gene=A0A8C2LHU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LJE5", "url": "https://www.orthodb.org/?gene=A0A8C2LJE5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EYH7", "url": "https://www.orthodb.org/?gene=A0A9J7EYH7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17611", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17611", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17611:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17611:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15376", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15376", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027239876", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239876", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LHU9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LHU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LHU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LHU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LJE5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LJE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZL5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3V0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCPVSTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKSSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSHSSSSSSSTAPPASTDTSSPKDCNSESEAIRERSTAASIPIHEKAQSRSRHEKENKLSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHCEKAERSVHAGSSSSSSSSGSIRQLCKRGKRPAKETGRSDPGNTAVKDLYVESRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSESVHGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHVLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEPTDSSANILGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDYVDEELLDFLQDEACQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAENKNFETTQACSESSPHGDGYSSGVIKDIWTKMADRNSVAAVETERTGEELFSTDVNNYCCCLDTDAKIEALQEPSRAVQRSEYHLWEGQKENLEKRAFISSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANIPIPSQIDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPVGKQNQCLECNFNESLEINLESSAVNCKIMAQCEEEINDFCSCKAGCQFPACEDNPVSSGQLEEIGKKENEERSKIPPTTTIFLRFLFPVLNTDVQEVTRDQEKQSWWEKALYSPLFPSSECEGSVASHGSYTRRQLATHLLKGPGIPEGPSIRNECYTNAKGENGIEEYPDAKETPSREERLLDFNRVSSVYEARCTGERGSEAKPNGLHRKMCSSASSDTGDTGSEAGGEWVGPNTEELFSRTHL", "length": 1451, "header": "tr|A0A9J7EYH7-1|A0A9J7EYH7_CRIGR Isoform 1 of Uncharacterized protein KIAA0232 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0232 PE=4 SV=1 CANONICAL=A0A9J7EYH7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LHU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LHU9/entry", "sequence": { "sequence": "MCPVSTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKSSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSHSSSSSSSTAPPASTDTSSPKDCNSESEAIRERSTAASIPIHEKAQSRSRHEKENKLSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHCEKAERSVHAGSSSSSSSSGSIRQLCKRGKRPAKETGRSDPGNTAVKDLYVESRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSESVHGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHVLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEPTDSSANILGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDYVDEELLDFLQDEACQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAENKNFETTQACSESSPHGDGYSSGVIKDIWTKMADRNSVAAVETERTGEELFSTDVNNYCCCLDTDAKIEALQEPSRAVQRSEYHLWEGQKENLEKRAFISSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANIPIPSQIDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPVGKQNQCLECNFNESLEINLESSAVNCKIMAQCEEEINDFCSCKAGCQFPACEDNPVSSGQLEEFPVLNTDVQEVTRDQEKQSWWEKALYSPLFPSSECEGSVASHGSYTRRQLATHLLKGPGIPEGPSIRNECYTNAKGENGIEEYPDAKETPSREERLLDFNRVSSVYEARCTGERGSEAKPNGLHRKMCSSASSDTGDTGSEAGGEWVGPNTEELFSRTHL", "length": 1428, "header": "tr|A0A8C2LHU9-1|A0A9J7EYH7_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0232 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0232 PE=4 SV=1 CANONICAL=A0A9J7EYH7-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LJE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJE5/entry", "sequence": { "sequence": "MCPVSTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKSSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSHSSSSSSSTAPPASTDTSSPKDCNSESEAIRERSTAASIPIHEKAQSRSRHEKENKLSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHCEKAERSVHAGSSSSSSSSGSIRQLCKRGKRPAKETGRSDPGNTAVKDLYVESRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSESVHGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHVLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEPTDSSANILGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDYVDEELLDFLQDEACQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAENKNFETTQACSESSPHGDGYSSGVIKDIWTKMADRNSVAAVETERTGEELFSTDVNNYCCCLDTDAKIEALQEPSRAVQRSEYHLWEGQKENLEKRAFISSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANIPIPSQIDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPVGKQNQCLECNFNESLEINLESSAVNCKIMAQCEEEINDFCSCKAGCQFPACEDNPVSSGQLEEFPVLNTDVQEVTRDQEKQSWWEKALYSPLFPSSECEECYTNAKGENGIEEYPDAKETPSREERLLDFNRVSSVYEARCTGERGSEAKPNGLHRKMCSSASSDTGDTGSEAGGEWVGPNTEELFSRTHL", "length": 1396, "header": "tr|A0A8C2LJE5-1|A0A9J7EYH7_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0232 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0232 PE=4 SV=1 CANONICAL=A0A9J7EYH7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYH7/entry", "sequence": { "sequence": "MCPVSTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKSSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSHSSSSSSSTAPPASTDTSSPKDCNSESEAIRERSTAASIPIHEKAQSRSRHEKENKLSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHCEKAERSVHAGSSSSSSSSGSIRQLCKRGKRPAKETGRSDPGNTAVKDLYVESRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSESVHGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHVLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEPTDSSANILGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDYVDEELLDFLQDEACQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAENKNFETTQACSESSPHGDGYSSGVIKDIWTKMADRNSVAAVETERTGEELFSTDVNNYCCCLDTDAKIEALQEPSRAVQRSEYHLWEGQKENLEKRAFISSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANIPIPSQIDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPVGKQNQCLECNFNESLEINLESSAVNCKIMAQCEEEINDFCSCKAGCQFPACEDNPVSSGQLEEIGKKENEERSKIPPTTTIFLRFLFPVLNTDVQEVTRDQEKQSWWEKALYSPLFPSSECEGSVASHGSYTRRQLATHLLKGPGIPEGPSIRNECYTNAKGENGIEEYPDAKETPSREERLLDFNRVSSVYEARCTGERGSEAKPNGLHRKMCSSASSDTGDTGSEAGGEWVGPNTEELFSRTHL", "length": 1451, "header": "tr|A0A9J7EYH7-1|A0A9J7EYH7_CRIGR Isoform 1 of Uncharacterized protein KIAA0232 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0232 PE=4 SV=1 CANONICAL=A0A9J7EYH7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL5/entry", "sequence": { "sequence": "MCPVSTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKSSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSHSSSSSSSTAPPASTDTSSPKDCNSESEAIRERSTAASIPIHEKAQSRSRHEKENKLSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHCEKAERSVHAGSSSSSSSSGSIRQLCKRGKRPAKETGRSDPGNTAVKDLYVESRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSESVHGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHVLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEPTDSSANILGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDYVDEELLDFLQDEACQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAENKNFETTQACSESSPHGDGYSSGVIKDIWTKMADRNSVAAVETERTGEELFSTDVNNYCCCLDTDAKIEALQEPSRAVQRSEYHLWEGQKENLEKRAFISSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANIPIPSQIDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPVGKQNQCLECNFNESLEINLESSAVNCKIMAQCEEEINDFCSCKAGCQFPACEDNPVSSGQLEEIGKKENEERSKIPPTTTIFLRFLFPVLNTDVQEVTRDQEKQSWWEKALYSPLFPSSECEECYTNAKGENGIEEYPDAKETPSREERLLDFNRVSSVYEARCTGERGSEAKPNGLHRKMCSSASSDTGDTGSEAGGEWVGPNTEELFSRTHL", "length": 1419, "header": "tr|A0A9J7EZL5-1|A0A9J7EZL5_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0232 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Kiaa0232 PE=4 SV=1 CANONICAL=A0A9J7EYH7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J3V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3V0/entry", "sequence": { "sequence": "MCPVSTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKSSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSHSSSSSSSTAPPASTDTSSPKDCNSESEAIRERSTAASIPIHEKAQSRSRHEKENKLSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHCEKAERSVHAGSSSSSSSSGSIRQLCKRGKRPAKETGRSDPGNTAVKDLYVESRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSESVHGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHVLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEPTDSSANILGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDYVDEELLDFLQDEACQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAENKNFETTQACSESSPHGDGYSSGVIKDIWTKMADRNSVAAVETERTGEELFSTDVNNYCCCLDTDAKIEALQEPSRAVQRSEYHLWEGQKENLEKRAFISSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANIPIPSQIDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPVGKQNQCLECNFNESLEINLESSAVNCKIMAQCEEEINDFCSCKAGCQFPACEDNPVSSGQLEEIGKKENEERSKIPPTTTIFLRFLFPVLNTDVQEVTRDQEKQSWWEKALYSPLFPSSECEGVFCL", "length": 1332, "header": "tr|A0A9J7J3V0-1|A0A9J7J3V0_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0232 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Kiaa0232 PE=4 SV=1 CANONICAL=A0A9J7EYH7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEU6/entry", "sequence": { "sequence": "MCPVSTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKSSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSHSSSSSSSTAPPASTDTSSPKDCNSESEAIRERSTAASIPIHEKAQSRSRHEKENKLSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHCEKAERSVHAGSSSSSSSSGSIRQLCKRGKRPAKETGRSDPGNTAVKDLYVESRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSESVHGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHVLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEPTDSSANILGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDYVDEELLDFLQDEACQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAENKNFETTQACSESSPHGDGYSSGVIKDIWTKMADRNSVAAVETERTGEELFSTDVNNYCCCLDTDAKIEALQEPSRAVQRSEYHLWEGQKENLEKRAFISSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANIPIPSQIDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPVGKQNQCLECNFNESLEINLESSAVNCKIMAQCEEEINDFCSCKAGCQFPACEDNPVSSGQLEEFPVLNTDVQEVTRDQEKQSWWEKALYSPLFPSSECEGVFCL", "length": 1309, "header": "tr|A0A9J7KEU6-1|A0A9J7KEU6_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0232 homolog isoform X6 OS=Cricetulus griseus OX=10029 GN=Kiaa0232 PE=4 SV=1 CANONICAL=A0A9J7EYH7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LHU9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LHU9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LHU9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LHU9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769248", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769248", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZYT3-1", "protein_name": "KIAA0232 homolog", "gene_name": "Kiaa0232", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPVCTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILGWEKGAYKKWGRSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSYSSSSSSSTVPPASTDPSSPKDCNSESEAVRERSSAASILTHEKAQSRSRHEENKLSHSTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRQSLKHCGKAERGVHAGSSSSSSSSSSSNGSIRQLCKRGKRPAKETGRSDSGNTAVKDLYVESRSNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSALTAEAVEDLSDSVRGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSPVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTILSSHMLAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEHTDSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNLQFEESTQFTAEDINYVVPRVSSDFVDEELLDFLQDETCQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAESKNFETTQACGESSPHGDGYSSGVIKDIWTKMVGRSSVAAAETERAGEELFSTDVSNYCCCLDTEAKMETLQEPSRAVQRSEYHLWEGQKENVEKRAFVSSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDMPKSGENGLNKGFSFIFHEDLLGACSNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPAGGSESEFESEKDEANIPIPSQVDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEAAGILPVGKQSQCLECNFNESLGINLESSTANCKIMTQCEEEMNGFCSCKAGCQFPACEDNPVSSGQLEEFPVLNTDVQEVTRNQEKQSWWEKALYSPLFPTSECEECYTNAKGENGIEEYPDAKETPSREERLLDFNRVSSVYEARCTGERGSETKPNGLPGKMCSSASSDAGDTGSEAGGEWVGPSREDLFSRTHL", "length": 1399 }, "evidence": [ { "id": "A0A9J7EYH7", "url": "https://omabrowser.org/oma/group/A0A9J7EYH7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B9H2-1", "protein_name": "KIAA0232", "gene_name": "KIAA0232", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRPVCAVAVDDLPSESSSSSYPGPVSVSEMSLLHALGPVQTWLGQELEKCGIDAMIYTRYVLSLLLHDSYDYDLQEQENDIFLGWEKGAYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCSRLKDLQSQQEEKIHKKLEGSPSPEAELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSAVGSYSSSSSSSTAPPASTDTPSPKDCNSEGEIIRERSGDAPPASLHERTQSGRSHSEKENRFRNGPSEERSAPPPPSKKQSRHRPDGKPRPRSWSSGSSEAGSSSSGNQGEPKASAKCVKLRHKVREIRNKKGARSGQSRLSLKRGEKAERSPHAAGSSSSSGGGGSFRQLCKRGKRPLKELGRKEAGGAEGRDLFLESRTDREYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNRQDAGDVTSAAVEELSESVHGLCISNNNIHKTYLAAGTFIDGHFVEMPAVINEDIDLAGTSFCPLPEDDKYLDDIHLSELTHFYEVDIDQSMLDPGASETTQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWADCTSSVGAEGFLLQDLGSLAQFWECCSSSSGDADGESFAGDSPVRLSPTLDSTALNPHLLAGNQELFSDINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGNENTDSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEETRSDNETLSVQFEESTQFNAEDINYVVPRVSSNYVDEELLDFLQDETCQQNSRTLGEIPTLVFQKKSKLESICGIQLEQKAENKAFETTQACSEGSPRGDGYSSGVIKDIWTKMADRNSAAPLEIESVDDELFPTDVNNYCCCLDAEAPMEPLQEPNKAVQRSEYHLWEGQKETLEKRAFVSGELSKVDGGDYTTPSKPWDVTQDKGSSFILGGVYGELRTLNSDAGWAVVPPSHAKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSLEQNDQPKSGENGLNKGFSFIFHEDLLGACGNFQVEDPGLEYPFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICDVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESERDEANVPIPSQVDAFEDPQADLKPLEEDAEKEGHYYGKSELESGKFLPRLKKSGMEKSAQTSLDSQEESAGVLPAGERNPCLECSMSEPLEIDLESPEANCKIMAQCEEEINHFCSCKAGCQFPAYEDNPVSSGQLEEQFPVLNTDVHGMNRSQERQTWWEKALYSPLFPASECEECYTNAKGENGIEEYPDVKEMPSNEERLLDFNRVSSVYEAKCTAEQDAGAQPNGFHRTPRCSAGSAAEDSGSEGGGEWADPGAEALFSRTHL", "length": 1405 }, "evidence": [ { "id": "A0A9J7EYH7", "url": "https://omabrowser.org/oma/group/A0A9J7EYH7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1QJT2-1", "protein_name": "Uncharacterized protein KIAA0232 homolog", "gene_name": "kiaa0232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRPMSGESDGPAPERVSQAFPLSGPVSSSEMSSLQSLGPVQSWLGQELEKCGIDAMIYTRYVLSLLLHDSYDYDLQDQENDIFLGWEKGAAKKWGKSKRKGGTDLSLEEMKKQAAVQCLRSASDENSGIESLVEELCSKLKDIQNKQKEKEKHGIKKSDISQSPEPDESLSSKDQVEMYYEAFPPLSEKPVCLQEIMTVWNTAKACTYSSSSSSAVPQTSTDTSSPKDCTSEGEAFKDRTVDAPSSTSTTSEKAQQRRTKREKENRFHGSATGMPDDQVAPHSKRQARHRSEGRFRPRSWSSGSSEAGSSSSGNQGDQAPSCKSVRIRHKSREVSGRNKKGRSGGGQVKLALKVIDKEERKNARGNMSTTGGPPKQQQHYMKKGKRPLREIRKDANLVEAQESGGEASKKEYMEEPLWYTEPIAEYFVPLSRSKLETKYRSKEDSSNDLAMSIDVDCLSERIQGICIANSCFQRAYLAAGTFVDGHFIEMPGEGDEEASELNGIPSCPPPEDGQDLDDEHLSEFTHFYEVDLYQSILDPSASDAVQESRILSMIRQKSVERKHFEAGCVVLDGLELQGESAIRVDSLGASEAEVSITQDMENIAQVWECCSSSSLEDLEGESCPGDSPGRLSPVLDSVPFNFSKLSGAYVGSRLQEASGSSSAPNPYFSLFEVQYDSPTFSFPCDSLTGGQENVDSSSCLDPQGNKQSRLLIWTKNSAFDETEHCSNLSTRTCSPWSHSEETRSDSEQVSAPADESAQFGNEEVSCISLIPPLCLEEELLDFFQENSSHQQEETSVSAESNQPFNKKSKLESVCGIALEQDESKLYNAVVFSDVPNQQSDEYTSGIIKDIWMAIGDRDCVLTLGVKNTGEHLFSEDSTSYQCSCLDKDAKGEIIQKKAVQCSEYHLWDGQKENDGLPKNKLTKMNDGDYTAPAKPWNCNSQESTSFILGGVYGELKTLSGDREWAMIPPGDACGSLLQCAAATSSDMVTIAGADVFMNTSSCFAPGHKPLWRPIVSLGQNEQATKGTGEGLNKGFSVVFHEDLLGSCGGFRGEESGLDYPFSSFDLNNPFSQVLHVECSFEPEDMASFSPGFKPKSILCSDKEPFCPWLYGINRTQYRAIRISPRTHFRPISASELSPGGCSESDVESEKEEASIPVGQADLFDDPQADLKPLEEDAECEGPYYGKSELESGKFLPRLKKSGMEKSAQTSLDSQEGGSTLLPITEQEICVHCEVAADSVPCSHVQSSVLLQEETSGETEPCNCVATGQIPKSGKSLDVAQDMHEFPLLNFGEQCLTNMQQEECWWQSSLCSPLFPGSQCGGSSNV", "length": 1325 }, "evidence": [ { "id": "A0A9J7EYH7", "url": "https://omabrowser.org/oma/group/A0A9J7EYH7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80U59-1", "protein_name": "Uncharacterized protein KIAA0232", "gene_name": "Kiaa0232", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRPVCTVVVDGLPSESTSSSYPGPVSVSDMSLLHALGPVQTWLGQELEKCGIDAMIYSRYILSLLLHDSYDYDLQEQENDILSWEKGAYKKWGRSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCCRLKDLQSEQEEKIHKKLEGSPSPEEELSPTAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKPCSYSSSSSSSTVPPASTDTSSPKDCNSESEAVRERSSVASVPMHEKAQSRSRHEKESKLSSSTIEEKPAFYKRQIRHKPEGKTRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNRKGRNGQNRHSLKHCGKAERGVHAGSGGSSSSSSNGSIRQLCKRGKRPAKETGRSDSGNTAVKDLYVDSRNNKEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNREDTSTLTAEAVEDLSDSVRGLCISNSNIHRTYLAAGTFIDGHFVEMPAVINEDIDLAGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGFFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTMLSSHILAGNQEPFSNINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGSEHADSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEEARSDNETLNIQFEESTQFTAEDINYVVPRVSSDFVDEELLDFLQDETCQQNSRTLGEIPTLVFKKRSKLESVCGIQLEQKAESKNFETTHACSESSPHGDGYSSGVIKDIWTKMVGRSSVAAVETERTGEELFSTDVNNYCCCLDTEAKMEALQEPSRAVQRSEYHLWEGQKENMEKRAFVSSELSKVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPGHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQSDMPKRGENGVNKGFSFIFHEDLLGACSNFQVEDPGLEYSLSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVERTQYRAIRISPRTHFRPISASELSPGGGSESEFESEKDEASVPIPSHVDVFEDPQADLKPLEEDAEKEGHYYGKLELESGKFLPRLKKSGMEKSAQTSLDSQEEATGILPKQNQCLECNFNESLEINLESSAANCKIMTQCEEEMSEFCSCKAGCQFPACEDNPVSSGQLEEFPVLNTDVQEVTRNQEKQSWWEKALYSPLFPTSECEECYTNAKGENGIEECPDAKETPSREERLLDFNRVSSVYEARCTGERGSETKPNGLHRKMCSSASSDTGDTGSEAGGEWVGPSREELFSRTHL", "length": 1396 }, "evidence": [ { "id": "A0A9J7EYH7", "url": "https://omabrowser.org/oma/group/A0A9J7EYH7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92628-1", "protein_name": "Uncharacterized protein KIAA0232", "gene_name": "KIAA0232", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYPICTVVVDGLPSESSSSSYPGPVSVSEMSLLHALGPVQTWLGQELEKCGIDAMIYTRYVLSLLLHDSYDYDLQEQENDIFLGWEKGAYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCSRLKDLQSKQEEKIHKKLEGSPSPEAELSPPAKDQVEMYYEAFPPLSEKPVCLQEIMTVWNKSKVCSYSSSSSSSTAPPASTDTSSPKDCNSESEVTKERSSEVPTTVHEKTQSKSKNEKENKFSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKYVKVRHKAREIRNKKGRNGQSRLSLKHGEKAERNIHTGSSSSSSSGSVKQLCKRGKRPLKEIGRKDPGSTEGKDLYMENRKDTEYKEEPLWYTEPIAEYFVPLSRKSKLETTYRNRQDTSDLTSEAVEELSESVHGLCISNNNLHKTYLAAGTFIDGHFVEMPAVINEDIDLTGTSLCSLPEDNKYLDDIHLSELTHFYEVDIDQSMLDPGASETMQGESRILNMIRQKSKENTDFEAECCIVLDGMELQGERAIWTDSTSSVGAEGLFLQDLGNLAQFWECCSSSSGDADGESFGGDSPVRLSPILDSTVLNSHLLAGNQELFSDINEGSGINSCFSVFEVQCSNSVLPFSFETLNLGNENTDSSANMLGKTQSRLLIWTKNSAFEENEHCSNLSTRTCSPWSHSEETRSDNETLNIQFEESTQFNAEDINYVVPRVSSNYVDEELLDFLQDETCQQNSRTLGEIPTLVFKKTSKLESVCGIQLEQKTENKNFETTQVCNESPHGDGYSSGVIKDIWTKMADTNSVATVEIERTDAELFSADVNNYCCCLDAEAELETLQEPDKAVRRSEYHLWEGQKESLEKRAFASSELSNVDGGDYTTPSKPWDVAQDKENTFILGGVYGELKTFNSDGEWAVVPPSHTKGSLLQCAASDVVTIAGTDVFMTPGNSFAPGHRQLWKPFVSFEQNDQPKSGENGLNKGFSFIFHEDLLGACGNFQVEDPGLEYSFSSFDLSNPFSQVLHVECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAIRISPRTHFRPISASELSPGGGSESEFESEKDEANIPIPSQVDIFEDPQADLKPLEEDAEKEGHYYGKSELESGKFLPRLKKSGMEKSAQTSLDSQEESTGILSVGKQNQCLECSMNESLEIDLESSEANCKIMAQCEEEINNFCGCKAGCQFPAYEDNPVSSGQLEEFPVLNTDIQGMNRSQEKQTWWEKALYSPLFPASECEECYTNAKGESGLEEYPDAKETPSNEERLLDFNRVSSVYEARCTGERDSGAKSDGFRGKMCSSASSTSEETGSEGGGEWVGPSEEELFSRTHL", "length": 1395 }, "evidence": [ { "id": "A0A9J7EYH7", "url": "https://omabrowser.org/oma/group/A0A9J7EYH7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1217, "end_pos": 1219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 705, "end_pos": 707, "annotation": "n_glycosylation_sequon" }, { "start_pos": 724, "end_pos": 726, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1217, "end_pos": 1219 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 260, "end_pos": 262 }, { "start_pos": 705, "end_pos": 707 }, { "start_pos": 724, "end_pos": 726 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F1M1-1", "uniprot_ac": "A0A9J7F1M1", "uniprot_id": "A0A9J7F1M1_CRIGR", "mass": { "chemical_mass": 67594.0, "monoisotopic_mass": 67594.0 }, "refseq": { "ac": "XP_027248837", "name": "leucine-rich repeat-containing protein 71 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248837" }, "gene_names": [ { "name": "Lrrc71", "type": "recommended", "evidence": [ { "id": "A0A9J7F1M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M1" } ] }, { "name": "Lrrc71", "type": "synonym", "evidence": [ { "id": "XP_027248837", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248837" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat-containing protein 71 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F1M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M1/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 71 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027248837", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248837" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248837", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248837" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M1", "locus": {} } ], "crossref": [ { "id": "A0A9J7F1M1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F1M1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761163", "url": "https://www.ncbi.nlm.nih.gov/gene/100761163", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761163", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761163", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VQYQVQF", "url": "https://omabrowser.org/oma/group/VQYQVQF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LTF3", "url": "https://www.orthodb.org/?gene=A0A8C2LTF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F1M1", "url": "https://www.orthodb.org/?gene=A0A9J7F1M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J9P8", "url": "https://www.orthodb.org/?gene=A0A9J7J9P8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46984", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46984", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46984:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46984:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248837", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248837", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LTF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LTF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2K1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2K1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2K1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2K1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5D6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H634", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H634", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H634-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H634-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H711", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H711", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H711-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H711-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7P1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7P1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7P1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9P8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9P8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9P8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 608, "header": "tr|A0A9J7F1M1-1|A0A9J7F1M1_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 71 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LTF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTF3/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESELVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 558, "header": "tr|A0A8C2LTF3-1|A0A9J7F1M1_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M1/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 608, "header": "tr|A0A9J7F1M1-1|A0A9J7F1M1_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 71 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2K1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2K1/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 509, "header": "tr|A0A9J7F2K1-1|A0A9J7F2K1_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X11 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5D6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D6/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKETGSQRWGWKPSSPPCNTRFRSPSPRLRPRAPWGCCGCPLPKTALTHSVQHTP", "length": 576, "header": "tr|A0A9J7F5D6-1|A0A9J7F5D6_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X4 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H634-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H634/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 556, "header": "tr|A0A9J7H634-1|A0A9J7H634_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X9 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y8/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 558, "header": "tr|A0A9J7H6Y8-1|A0A9J7H6Y8_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X8 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H711-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H711/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 580, "header": "tr|A0A9J7H711-1|A0A9J7H711_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA60/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADVLRPFELTHKEVVERRRLLLEKGSQERSRSEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 528, "header": "tr|A0A9J7HA60-1|A0A9J7HA60_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X10 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J4W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4W4/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESELVVETTEMVNPLLEPVEHRDGKVFLPGNKETGSQRWGWKPSSPPCNTRFRSPSPRLRPRAPWGCCGCPLPKTALTHSVQHTP", "length": 575, "header": "tr|A0A9J7J4W4-1|A0A9J7J4W4_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X5 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7P1/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPENFVWNFLYRLGCFRTQNSISAEIKGGSLQGLALKNTHFQGILTYIIRYEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESELVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 607, "header": "tr|A0A9J7J7P1-1|A0A9J7J7P1_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9P8/entry", "sequence": { "sequence": "MSSEPSSTGTSPRTPRPGTQKSSGAVTKKGERTKEKPAAPLPPVGEEEPKNPEEYQCSGVLETDFAELCTRSGYTDFPKVVTRPRPNQNFVPSASMSEKATQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKVVKEIYIRGWRVEDRILGIFSKCLPSLSQLQAINFWKVGLTDNTLATFIALLPLCSSTLRKVSLEGNPIPEQSYYKLMGLDSTIAHLSLRNNNIDDYGAQLLGQALSTLHTSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHKEVVERRRLLLEKGSQERSRSPSSSRHGDSKTDRDRDKLQMVGISNITLVDKSEKMQTIKTPKGLGKKKEKTGEVVKKEEKSGPGQSPTQGTPKKEDASKAGKGKVTIPEQKMSKGKGTKTGSKEKRSILLESEQLVVETTEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQVSKPKTSAKGPLGLLWLSLAKNCFDPQCPTYTMIQELMLPRDPVKAKVKEEEGTAI", "length": 559, "header": "tr|A0A9J7J9P8-1|A0A9J7J9P8_CRIGR Computationally mapped isoform of Leucine-rich repeat-containing protein 71 isoform X6 OS=Cricetulus griseus OX=10029 GN=Lrrc71 PE=4 SV=1 CANONICAL=A0A9J7F1M1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LTF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTF3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LTF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTF3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761163", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761163", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZTZ6-1", "protein_name": "Leucine rich repeat containing 71", "gene_name": "Lrrc71", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSEPSATGTSPRTPRPGTQKSSGAVTKKGDRAAKDKAASVLPPVGEEESKNPEEYQCTGVLETDFAELCARSGYTDFPKVVTRPRPQQSFVPSASMSEKPVQDDQRLSASCSQNSLESKYVFFRPTIQVELEQEDSKTVKEIYIRGWKIEERILGIFSKCLPPLSQLQAINLWKVGLTEKTLTAFIALLPLCSPTLRKVSLEGNPIPEQSFNKLMGLDSTIVHLSLRNNNINDHGAQLLGQALSTLHSSNRTLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNHIQDKGALKLAEVLRPFELTHREVVERRRLLLVKGTQERSRSPSSSRHGDSKTDREKSQNLGISNVTLVDKAEKMQSMKAPRTIGKKKEKSGEVVKKEEKLGPGQSPTQGTPKKEDAPKAGKGKVTIPEQKISKGKATKTGAKEKRSILLESEQLVVEATEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNQITEVGLEGFLTAVQYQVQVSKSKTSPKAPLGLLWLSLAKNCFDPQCPTHIMIQELMLPRDPVKAKVREEEATAT", "length": 558 }, "evidence": [ { "id": "A0A9J7F1M1", "url": "https://omabrowser.org/oma/group/A0A9J7F1M1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1RHK8-1", "protein_name": "Leucine rich repeat containing 71", "gene_name": "LRRC71", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGEASAPPVASPRTPRPGIQKSSGSVAKKGDRGAKEKPATVLPPVGEEEPKNPEEYQCTGFLEVDFAELCTRWGYTDFPKVVSRPRPHPTFVPSASTSEKPTIDDQRLSGSCSLNSLESKYVFFRPTIQVEVESEDKSVKEIYIRGWKVEERILGIFSKCLPSLSQLQAINLWKVGLTDKTLTTFIALLPLCSSTLRKVSLEGNPLPEQSYHKLMAVDSTIAHLSLRNNNIDDHGAQLLGQALSTLHSCNRNLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHTEVVERRRLLLEKGSQERSRSPSNSRHGDSKPEREKNQLMGVSSFAVVDKTDKTQAMKTPKGLGKKKEKLGEVVKKEEKSGTGQSPTQGTPKKEDSTKASKGKVTIPEQKPGKGKGTKSGSKEKRSILLESELVGEATEMVNPLLEPVEHRDGKVFMPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQFSKSKSASKGPVGLLWLSLAKNYFSPQCPAYAMIQELMLPRDPISKAKHREEEAMASS", "length": 559 }, "evidence": [ { "id": "A0A9J7F1M1", "url": "https://omabrowser.org/oma/group/A0A9J7F1M1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q8N4P6-1", "protein_name": "Leucine-rich repeat-containing protein 71", "gene_name": "LRRC71", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSEQSAPGASPRAPRPGTQKSSGAVTKKGERAAKEKPATVLPPVGEEEPKSPEEYQCSGVLETDFAELCTRWGYTDFPKVVNRPRPHPPFVPSASLSEKATLDDPRLSGSCSLNSLESKYVFFRPTIQVELEQEDSKSVKEIYIRGWKVEERILGVFSKCLPPLTQLQAINLWKVGLTDKTLTTFIELLPLCSSTLRKVSLEGNPLPEQSYHKLMALDSTIAHLSLRNNNIDDRGAQLLGQALSTLHSCNRTLVSLNLGFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRAFELTHTEVVERRRLLLEKGTQERSRSPSSSRHGDSKTDREKSQMVGISNSALVDKTDKTQTMKTPKGLGKKKEKSWELAKKEEKLGSGQSPTQGTPKKEDATKAGKGKVTIPEQKPSRAKGIKIGSREKRSILLESELVVEATEVVNPLLEPVEHRDGKVFMPGNKVLLHLNLIRNRITEVGLEGFLATVQYQMQFSKAKSASKGPVGLLWLSLAKNCFAPQCPAYAIIQELMLPRDPIKAKLREDEAMAFFP", "length": 559 }, "evidence": [ { "id": "A0A9J7F1M1", "url": "https://omabrowser.org/oma/group/A0A9J7F1M1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D3W5-1", "protein_name": "Leucine-rich repeat-containing protein 71", "gene_name": "Lrrc71", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSEPSTTGTSPRTPRPGAQKSSGAVTKKGDRAAKDKTASTLPPVGEDEPKNPEEYQCTGVLETDFAELCTRSGYVDFPKVVTRPRVQQSSVPSASTSEKPVLDDQRPSASCSQSSLESKYVFFRPTIQVELEQEDSKAVKEIYIRGWKVEDRILGIFSKCLPSLSQLQAINLWKVGLTDKTLTTFIALLPLCSSTLRKVSLEGNPIPEQSFSKLMGLDSTIVHLSLRNNNINDHGAQLLGQALSTLQNSNRTLVSLNLAFNHIGDVGAGYIADGLRLNRSLLWLSLAHNHIQDKGALKLAEVLRPFELTHREVVERRRLLLVKGTQERSRSPSSSRYGDSKAEREKSQTLGISNVTLVDKQEKMQSLKAPKTISKKKEKTGEVVKKEEKLGSGQSPTQGTPKKEDAAKAGKGKVTIPEQKMSKGKATKMGAKEKRSILLESEQLVVEATEMVNPLLEPVEHRDGKVFLPGNKVLLHLNLLRNQITEVGLEGFLTAVQYQVQVSKPKTSPKAPLGLLWLSLAKNCFDPQCPTHVMIQELMLPRDPVKAKAREEEAAAT", "length": 558 }, "evidence": [ { "id": "A0A9J7F1M1", "url": "https://omabrowser.org/oma/group/A0A9J7F1M1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 299, "end_pos": 301 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 405, "end_pos": 407 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QGR1-1", "uniprot_ac": "A0A8C2QGR1", "uniprot_id": "A0A8C2QGR1_CRIGR", "mass": { "chemical_mass": 90234.0, "monoisotopic_mass": 90234.0 }, "refseq": { "ac": "XP_007641669", "name": "ral guanine nucleotide dissociation stimulator-like 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641669" }, "gene_names": [ { "name": "Rgl1", "type": "recommended", "evidence": [ { "id": "A0A8C2QGR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" } ] }, { "name": "Rgl1", "type": "synonym", "evidence": [ { "id": "XP_007641669", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641669" } ] } ], "protein_names": [ { "name": "Ral guanine nucleotide dissociation stimulator-like 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QGR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1/entry#names_and_taxonomy" } ] }, { "name": "ral guanine nucleotide dissociation stimulator-like 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641669", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641669" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613921.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641669", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641669" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rgl1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1", "locus": {} } ], "crossref": [ { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17210", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17210", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762723", "url": "https://www.ncbi.nlm.nih.gov/gene/100762723", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762723", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762723", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DSCMVYD", "url": "https://omabrowser.org/oma/group/DSCMVYD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LX83", "url": "https://www.orthodb.org/?gene=A0A8C2LX83", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QGR1", "url": "https://www.orthodb.org/?gene=A0A8C2QGR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113:SF199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113:SF199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00618", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00618", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641669", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641669", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LX83", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LX83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LX83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LX83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5K6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5K6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5K6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QGR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QGR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGKSVGEPTQLVSKVKLSTKVENTGHWLVEDHAQIWEVLKTEESSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPNCEEDGSPSSLESKTVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKRMMPGSDPERRAQNLLEQFQKQEVDSDNGLLNTSSFSLEEEEELECGASAEFTSFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSQRDKKENKHLAPTIRATISQFNALTKCVVSTILGSKELKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDFIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEESYALSCEIEAAADANTTSPKPRKSMVKRLSLLFLGSDIITGSTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSVTSITSTVLPPAYNQQNEDTCIIRISVEDSNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL", "length": 803, "header": "tr|A0A8C2QGR1-1|A0A8C2QGR1_CRIGR Isoform 1 of Ral guanine nucleotide dissociation stimulator-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rgl1 PE=4 SV=1 CANONICAL=A0A8C2QGR1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LX83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LX83/entry", "sequence": { "sequence": "MKLLWQAKMSSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPNCEEDGSPSSLESKTVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKRMMPGSDPERRAQNLLEQFQKQEVDSDNGLLNTSSFSLEEEEELECGASAEFTSFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSQRDKKENKHLAPTIRATISQFNALTKCVVSTILGSKELKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDFIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEESYALSCEIEAAADANTTSPKPRKSMVKRLSLLFLGSDIITGSTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSVTSITSTVLPPAYNQQNEDTCIIRISVEDSNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL", "length": 768, "header": "tr|A0A8C2LX83-1|A0A8C2QGR1_CRIGR Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rgl1 PE=4 SV=1 CANONICAL=A0A8C2QGR1-1" }, "locus": {} }, { "isoform_ac": "A0A8C2M5K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5K6/entry", "sequence": { "sequence": "MDGKSVGEPTQLVSKVKLSTKVENTGHWLVEDHAQIWEVLKTEEVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPNCEEDGSPSSLESKTVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKRMMPGSDPERRAQNLLEQFQKQEVDSDNGLLNTSSFSLEEEEELECGASAEFTSFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSQRDKKENKHLAPTIRATISQFNALTKCVVSTILGSKELKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDFIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEESYALSCEIEAAADANTTSPKPRKSMVKRLSLLFLGSDIITGSTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSVTSITSTVLPPAYNQQNEDTCIIRISVEDSNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL", "length": 766, "header": "tr|A0A8C2M5K6-1|A0A8C2QGR1_CRIGR Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rgl1 PE=4 SV=1 CANONICAL=A0A8C2QGR1-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QGR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1/entry", "sequence": { "sequence": "MDGKSVGEPTQLVSKVKLSTKVENTGHWLVEDHAQIWEVLKTEESSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPNCEEDGSPSSLESKTVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKRMMPGSDPERRAQNLLEQFQKQEVDSDNGLLNTSSFSLEEEEELECGASAEFTSFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSQRDKKENKHLAPTIRATISQFNALTKCVVSTILGSKELKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDFIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEESYALSCEIEAAADANTTSPKPRKSMVKRLSLLFLGSDIITGSTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSVTSITSTVLPPAYNQQNEDTCIIRISVEDSNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL", "length": 803, "header": "tr|A0A8C2QGR1-1|A0A8C2QGR1_CRIGR Isoform 1 of Ral guanine nucleotide dissociation stimulator-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rgl1 PE=4 SV=1 CANONICAL=A0A8C2QGR1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LX83", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LX83" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LX83", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LX83" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762723", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762723", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1NAC7-1", "protein_name": "Ral guanine nucleotide dissociation stimulator like 1", "gene_name": "RGL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEKPLGEPAYVVSKLKLSTKVESTGHWLVEDHARIWEVLKTEESSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTSPNCEEDGGQSSSESKTVIRNAIASILRAWLDQCAEDFREPPGFPCLQKLLHYLKQMMPGSDPERRAQNLLEQFHKQEVEADNGFPNSISFSLEEEEELEGGGSAEFTCFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAPTIRATISQFNTLTKCVVSTILGGKELKTQQRAKIIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKTWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMSPDPKFIQWFQRQQLLTEEESYALSCEIEAAADASATSPKPRKSMVKRLSLLFLGSDIVTSSAPTKEQPKSATSGSSGESMDSVSVSSCESNHSEVEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDTTSSGMSSLMNPLSSPPSCNNNPKIHKRSVSVTSITSTVLPPVYNQQNEDTCIIRISIEDNNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL", "length": 803 }, "evidence": [ { "id": "A0A8C2QGR1", "url": "https://omabrowser.org/oma/group/A0A8C2QGR1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZS31-1", "protein_name": "Ral guanine nucleotide dissociation stimulator like 1", "gene_name": "Ralgdsl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEKSVGEPTQVVSKVKLSTKVENPGHWLVDDHARIWEVLKTEESSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPHWEDDGSQSSPESKAVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKQMMPGSDPERRAQNLLEQFQKQDVDSDNGLLNTISFSPEEEEELESGGSAELTTFSEDLVAEQLTYMDAQLFKKVVPHHCLGCVWSRRDRKENKHLAPTIRATISQFNALTKCVVSTILGSKDLKTQQRARVIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAVPKDRMLMFEELSEIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMSPDQKFIQWFQRQQLLTEEESYALSCEIEAAADASTTSPKPRKSMVKRLSLLFLGSDLIPGSTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSATPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPACNNNPKMHKRSVSVTSITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKSSVEEQVKMRSRTSLTMPRTAKRGCWSNRHSKVTL", "length": 803 }, "evidence": [ { "id": "A0A8C2QGR1", "url": "https://omabrowser.org/oma/group/A0A8C2QGR1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9PCE9-1", "protein_name": "Ral guanine nucleotide dissociation stimulator-like, isoform E", "gene_name": "Rgl", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNFTSRANCKCPHSQKHQQKPALIKSHTCAYQLQDLTGYNRALMPPLDNTDFSNAWRQVNNNTTSQSCAYHQQRQQQQQQQDAKDSKRHYHHHTCPRQRKKSMTPVEPTHLCQKHQEAKQRRSRSASAKPRRNSSYHSYDDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTKDLHAKNYTYTKPTWRLWGEEHEKNAIFTVYLKKVRYHRPTPTASNDSDDEISHLEWETVRVRFVKAATLARLVEALATDDGELESTFINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQAQQNGQVMDPAYDPHASIHEQHKKTLVSALHVWLDGFPEDWHEDNLQQILAFATKRLKRSDLHIKVLNRLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFNGMYLSPMGHGPIYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGHTWARRDSGGSETVVATINQFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKNFSSLKAIISALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDPGSDHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLAQIKLLQGAANTYNLQADALFDHWFNSMPVFDEREAFELSCRLEPPPPAPRKSVVSTNTSLTNTTASSTASIMGHRKTDSIHSNSSSGAGSQFYCELNSSTSSRHNSLDRDVHHQHASLMSASSSVSNLSLDSSNSGGRQSGKLTHSQSMGNGLKSHGNGTTNGGSPHINAQLVQPSSGTPHSAPDFYIIRVTYETDNIELDGIVLYKSIMLGNNERTPQVIRNAMLKLGLEDDPDRFTLAQVLPDKELVMPKNANVYYAVNTNYNLNFILRPRKEEGVAGSXSTAVPLSQLWCLGYEGEE", "length": 973 }, "evidence": [ { "id": "A0A8C2QGR1", "url": "https://omabrowser.org/oma/group/A0A8C2QGR1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q60695-1", "protein_name": "Ral guanine nucleotide dissociation stimulator-like 1", "gene_name": "Rgl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLLWQAKMSSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPNCEDDGSQSSPESKAVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKQMMPGSDPERRAQNLLEQFQKQDVDSDNGLLNTSSFSLEEEEELESGGSAEFTNFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSQRDKKENKHLAPTIRATISQFNTLTKCVVSTVLGSKELKTQQRARVIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAVPKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMGPDQKFIQWFQRQQLLSEEESYALSCEIEAAADANTTSPKPRKSMVKRLSLLFLGSDIIPGSTPTKEQPKSAASGSSGESMDSVSVSSCESNHSEAEEGPVTPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSVTSITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL", "length": 768 }, "evidence": [ { "id": "A0A8C2QGR1", "url": "https://omabrowser.org/oma/group/A0A8C2QGR1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P112-1", "protein_name": "Ral guanine nucleotide dissociation stimulator-like 1", "gene_name": "rgl1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MISHYPLASLLPWPPVPQLLDIDGDGGVALQRYQPRSPETGPRYWSSVQDWGEEVEEGAIYNVTLKRVQIQQAANKGARWLGAEGDRLPPGHTVSQLETCKIRSIRAGTLERLVETLLTAFGDNDLTYTSIFLSTYRAFASTQSVLELLLDRYGSFEDCEGERSQCQTGESRKAVRKALASILRAWLDQCPEDFQEPPSYPSLHRVLGFLQKAMPGSEPMRRAQSLLEQLRVQASLENETEGGFQCINPFCLGEDEEVEIDLQEDFFSFEVDLVAEQLTYMDALLFKKVVPHHCLGSIWSQRDKKDGKQSAPTIRATITQFNAVTACVVSTILRQRQIRPHLCARIIQRWIDIAQECRIRKNFSSLRAIVSALQSNPLYRLKRTWASVAKDSMQMFEELSDIFSDQNNYLTSRELLMREGTSKFASLDSCAKDHQKRSQKRLQLQKDMGAMQGTIPYLGTFLTDLTMLDTALPDQVEGGLINFEKRRREFEVIAQIKLLQSACNSYCLTPDPAFFRWFKSQPQYSEEESYVLSCEVEGLGDNSPTSPKPRKSMVKRLSLLFLGNDSTNTSSPVRESPRSPPTGSSGESMDSVSVSSSDSSPSESDGMTPTHSIDAHLKKLSESSSCNSLHSMDTSSSTASASISLASPTLPGPPCNHRRSISLTPLMSPTSPGFPPAYNTQAQDACIIRVSLEQGNGNLYKSIMLTSQDKTPAVISRAMTKHNLEGEQAADYELVQVISEERELVIPDNANVFYAMSTSANFDFLLRLRGSEGRPVQLRSRCSSTLPRTQQRSSLSLRLSKVTL", "length": 804 }, "evidence": [ { "id": "A0A8C2QGR1", "url": "https://omabrowser.org/oma/group/A0A8C2QGR1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9NZL6-1", "protein_name": "Ral guanine nucleotide dissociation stimulator-like 1", "gene_name": "RGL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLLWQAKMSSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIKAGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTSPNCEEDGSQSSSESKMVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLDYLTRMMPGSDPERRAQNLLEQFQKQEVETDNGLPNTISFSLEEEEELEGGESAEFTCFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAPTIRATISQFNTLTKCVVSTILGGKELKTQQRAKIIEKWINIAHECRLLKNFSSLRAIVSALQSNSIYRLKKTWAAVPRDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEESYALSCEIEAAADASTTSPKPRKSMVKRLSLLFLGSDMITSPTPTKEQPKSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPSCNNNPKIHKRSVSVTSITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSMEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL", "length": 768 }, "evidence": [ { "id": "A0A8C2QGR1", "url": "https://omabrowser.org/oma/group/A0A8C2QGR1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 540, "end_pos": 542, "annotation": "n_glycosylation_sequon" }, { "start_pos": 597, "end_pos": 599, "annotation": "n_glycosylation_sequon" }, { "start_pos": 635, "end_pos": 637, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QGR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" }, { "id": "PS50212", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50212" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-terminal Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 231, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QGR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 267, "end_pos": 536, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QGR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGR1" }, { "id": "PS50200", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50200" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-associating", "eco_id": "ECO_0000259", "start_pos": 683, "end_pos": 770, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 540, "end_pos": 542 }, { "start_pos": 597, "end_pos": 599 }, { "start_pos": 635, "end_pos": 637 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EY50-1", "uniprot_ac": "A0A9J7EY50", "uniprot_id": "A0A9J7EY50_CRIGR", "mass": { "chemical_mass": 242930.0, "monoisotopic_mass": 242930.0 }, "refseq": { "ac": "XP_027245460", "name": "dedicator of cytokinesis protein 9 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245460" }, "gene_names": [ { "name": "Dock9", "type": "recommended", "evidence": [ { "id": "A0A9J7EY50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" } ] }, { "name": "Dock9", "type": "synonym", "evidence": [ { "id": "XP_027245460", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245460" } ] } ], "protein_names": [ { "name": "Dedicator of cytokinesis protein 9 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7EY50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50/entry#names_and_taxonomy" } ] }, { "name": "dedicator of cytokinesis protein 9 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027245460", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245460" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245460", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245460" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EY50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dock9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50", "locus": {} } ], "crossref": [ { "id": "cd08697", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08697", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11698", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11698", "database": "CDD", 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23317:SF77", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23317:SF77", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11878", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11878", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20421", "database": "Pfam", "categories": [ "Protein 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}, { "id": "A0A9J7J8Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2128, "header": "tr|A0A9J7EY50-1|A0A9J7EY50_CRIGR Isoform 1 of Dedicator of cytokinesis protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LZA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZA3/entry", "sequence": { "sequence": "MAQQPLPAAAAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2091, "header": "tr|A0A8C2LZA3-1|A0A9J7EY50_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A8C2M298-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M298/entry", "sequence": { "sequence": "MQAEKYRTSGRNDKKELVIESPLQYKDSAPGDTEAESSVLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2088, "header": "tr|A0A8C2M298-1|A0A9J7EY50_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EX28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX28/entry", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2079, "header": "tr|A0A9J7EX28-1|A0A9J7EX28_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X11 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EX54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX54/entry", "sequence": { "sequence": "MQAEKYRTSGRNDKKELVIESPLQYKDSAPGDTEAESSVLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2114, "header": "tr|A0A9J7EX54-1|A0A9J7EX54_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X4 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EY50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50/entry", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2128, "header": "tr|A0A9J7EY50-1|A0A9J7EY50_CRIGR Isoform 1 of Dedicator of cytokinesis protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1K7/entry", "sequence": { "sequence": "MAQQPLPAAAAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2068, "header": "tr|A0A9J7F1K7-1|A0A9J7F1K7_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X13 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M9/entry", "sequence": { "sequence": "MAQQPLPAAAAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2094, "header": "tr|A0A9J7F1M9-1|A0A9J7F1M9_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X8 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1Q7/entry", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIASVRKISSVLGISVDNGYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2097, "header": "tr|A0A9J7F1Q7-1|A0A9J7F1Q7_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X7 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F297-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F297/entry", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2105, "header": "tr|A0A9J7F297-1|A0A9J7F297_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X5 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2H8/entry", "sequence": { "sequence": "MAQQPLPAAAAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2117, "header": "tr|A0A9J7F2H8-1|A0A9J7F2H8_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X3 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HE76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE76/entry", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQRESTVLPYSHNTCQRKSLGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEV", "length": 2040, "header": "tr|A0A9J7HE76-1|A0A9J7HE76_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X15 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J310-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J310/entry", "sequence": { "sequence": "MAQQPLPAAAAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIASVRKISSVLGISVDNGYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2060, "header": "tr|A0A9J7J310-1|A0A9J7J310_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X14 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J5H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5H2/entry", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIASVRKISSVLGISVDNGYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2071, "header": "tr|A0A9J7J5H2-1|A0A9J7J5H2_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X12 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8Y8/entry", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCAQQGERNALEYTAYNWSKEDSELLISPCLAKPKLIEPLDYENVLVQKKTQILNDCLREVLLFPFDDFQTAILRRQGRYMRSTVPVNAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPSKAVKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDAQRLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPPSPTLMNGGQSPPAFQGAFHAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSIAHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNGRFSAVYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSTKGSTKRKDAVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELSMGRHYGPEIKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGNELVKYLKSLHAMEGHVVIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYIASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVKDVSPFPVNPGSIVKDEPLAVPTGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPERNPEKSNSLDKHQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTTELMDFFTISEVCLHQFQYMGKRYIARNQEGLGAIGHDRKSQTLPVSRNRTGVMHARLQQLGSLDNSVTFNHSYGHSEADVLHQSLLEANIATEVCLTTLDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLGSIRTDASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIQCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALVVNERLIKEDQLEYQEEMKANYREMAKELSGIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTVVQGLTSSSSIV", "length": 2102, "header": "tr|A0A9J7J8Y8-1|A0A9J7J8Y8_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 9 isoform X6 OS=Cricetulus griseus OX=10029 GN=Dock9 PE=3 SV=1 CANONICAL=A0A9J7EY50-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZA3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZA3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZA3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZA3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768424", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768424", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q63603-1", "protein_name": "Dedicator of cytokinesis protein 9", "gene_name": "Dock9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "KLSRGHSPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSTFYEGRADMCASLCYEVLKCCNSKLSSIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISLSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQREPPVFPYSHTSCQRKSRGGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERLRAGLLTSINSSSPSMKSGGTLETTHLYDTLHRPYSKVTEVITRAAGSWDLLPGGLFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERKTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELHQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREIRKELSDIIVPRICPGEDKRATKFPAHLQRHQRDTNKHSGSRVDQFILSCVTLPHEPHVGTCFVMCKLRTTFRANHWFCQAQEEAMGNGREKEPGL", "length": 720 }, "evidence": [ { "id": "A0A9J7EY50", "url": "https://omabrowser.org/oma/group/A0A9J7EY50/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86I66-1", "protein_name": "DOCK family protein", "gene_name": "zizA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEGKKVSTFLKSRKSTGGSSMNLTGSSNSQTLPTSMSSSSPNSSILSQSISSASSSTSSISNGGGGSSGNVSVSNSTSDLAQYNENYQKRNTRQIPSILLEDEIEKEEDYPFDFERYYYESKEINREVSRELVVIPDDATQNQIENLPKENRIKSNPFDYKENKNQHIDDCIKFYSNNTWKSLKTFNYYKNETPGAIVHQLTEERIEFKTEPIVNINNLNSNVNISISQAQKIASEAALEAKLAPQQQTPQQQQMAALQFQQQQNLKEVNYLSQQHQFQIQNTLKTDKPDKLHLHYLERQFRKEKVLINSNNNNNNNNNNENNNGENNNNSNNNNNNNNGENNNTEFGLYSYFTLSEPTVQYQEPTPYQKEKKRIIQVTFKDLSFKFWDGDDEPEPFYCSMYLYDIQKKARLSETFYFDFINDKSFKMTTSHITTSSGASSKDVVVDDVTLAKSAIFNVTARSSSELENIYLILKVEKVLTGDLEDHSEPYIKMNLKEKEKDKFKESIKSSCTRLGAFRQAFCWGCVPVFEEGVGEDTPIRPLYRHRSEMTDSSMLDSTLSEGSKSASAKKLKIIPGQCLVDIKEILPNDQQSPYLNNKKFILNSSLIKIDLPQLDQQQQQSTTTTTQNSTEQNNNNINQPGKIPSNIGIENIIKECHEFSSNQRFEINTEFVNNLYLYPETLNLSNRSGSFAARNLTCKIQLLETDENPLCPEGLKAIYGKSKTQSFNSKAYTQVTYHSKTPVFNDEIKIRLPLSPSPSLHILFTFYHIACQKSSGGGDLVDQPVAYGVLPIIQYGKMIGEEVFNLPLAYEFPSRYTRRDQEATIKYIDNKKPIFQVRSKLVSSIHSTDDYLNSFFNNISQFSFINNCLASPSLSPTPTSTPSVTSPSILTSPTISSQNLSNSNNNNNNNSTTTTTTTTTTTTNISPSNSTMEQLIKSIKLLPSSKLECIIQFFPILMNQLFRLMTNQQHSSELSMVTFITIGEILSMVNDVGSTISDRYVKYVFSNVNNQAGSNIEFLPTYEVLIKTWLELVRFQEQNSENILRFSRFFFQVIHKSMALSLIERNKREENKTRKGRFVGVRPQLAKLISILRWESSTRAKHTFKLAKELIRSLAGFISCLVSIADRGYVFKIIDRAVNDFTHNNQIGGENEMEIYELKFEFLRIICQNDYFVQLNIPLPFRIDSTSKLTNILTSSKHFLSDLLLNNISAGIGSKIPLIRMDAANSLRDTLTRLEMDTRWFDQSNKQRIVGVFTPYLTIVVNNWDNIKDDSFIMKRNILVSFIYLLKTIHINLIKIWWREEPKAKYVTLFDILNQCLEIFEFVGKEILMDKVESSTSLRTSTAKSILEDFYSNSRNSPYGSKKLYNRSLREKRVDSRKSVLENNYSNNNNVGSSNNNNNNVSGSPSSSTILINSTSNSNLLSTSFVTSSGGGSGSGYSSKSSGSSGSSGGSLIESTSTSSLNGSGSGYQNQNNNSNYSPSTTRDVSSGSGTLRNEKRMKSTLAQNKINISDYDDRLESHLALEVGSVVLDVVDEFMCEYDRDLKTTHYFDVIEKIFNLLHSMLKKNQPVQLVPKLYATLRQFIYRFPKILFENNNSFCLDLCNAVIRHCNSVNQTTREEASAFTYILFRKNFEQTKKNFVRTKTQVTIGLSTIVKSINDDYFLKKSLDTINSYAYAQADKAGTKSFSKQIEDLTKRLHTFVIDNIKINNHRDDPEMVADLYHRIADNNKSNADTRICWLQGLADFHRTQENYVEAAQCYLHMSSLVAEYLSLIGKPIPTINGSNNFMAINKNSLEESHTFIEREEDGADDNQSFTLDFFLKLVQEAILLLKESEYFEIANLVYKLLLPVHEEHLNYQELARCHGDLQDIFKRIVECTNTQSRMLGSYYRVGLYGKRFEEMNGKEFIYKEPKITRLVEIKDRLKSLYSKKLSVPEDSIVIIEGSTVDISSIEQDAAKCYLQITSVVPYFTEEELVGRRTPFDRIVHLNRFIFETPFIESGAGRANSIAEQYKRKTILKTSNYFPYTKKRISVISKQEVILSPIENSIETIDQRTETISNEVRSKVPNPKTLQQVLQGTLRLQVNIGPQEICRVFLATDPTSGAYNYPLEQIKKLKKSLSLFLGSCSEALFINKGLVENQSSQEFQEEMEQGYIQLTDLMESLGVLPPEGSYYPTLNSNSNGTSSNNNLSNSSIYGSSNNFGGSGSPVIQLNSSMINNTGSSSGNNTPTKSHNRNSSNPNRNSTGSGSTISLENDDDSNFNNLLSTSHVSRKSFTQRLSSGFKSD", "length": 2284 }, "evidence": [ { "id": "A0A9J7EY50", "url": "https://omabrowser.org/oma/group/A0A9J7EY50/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BIK4-1", "protein_name": "Dedicator of cytokinesis protein 9", "gene_name": "Dock9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCKQPGESNALEYTAYNWSKEDSELSIAFCLAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPANAEEEAQSLFVTECIKTYNSDWHLVTYKYEDYSGEFRQLPNKVPKLDKLPVHVYEVDEEADKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVIQNNRVRRFAFELKMQDKSSYLLAADSEAEMEEWVTVLNKILQLNFEAAMQEKRNGDPHEDDEQSKLEGSGSGLDSYLPELAKSTREAEIKLKSESRVKLFYLDPDTQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLAPTSPALMNGGQSPPAFQDALHTAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHCAEPYMRSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDTSGNLDKNARFSAIYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDSVSCDFPNYLNSSYIPMRQFETCSKSPITFEVEEFVPCIPKHTQPYTVYSNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSALAAVLHHQQNPEFYDEIKIELPAQLHERHHLLFTFFHVSCDNSTKGSTKKKDAVETQVGFSWLPLLKDGRVLTSEQHIPVSANLPSGYLGYQELGMGRHYGPEVKWVEGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQASGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKFAYKAEPYVASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENNKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRVIAISMLKNLLIKHSFDDRYNSRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSIVKDEALAVPAGNPLMTPQKGNTLDHSLHKDLLGAISGIASPYTASTPNINSVRNADSRGSLISTDSGNSLPDRNPEKSNSLDKQQQSGMLGNSVVRCDKLDQSEIKSLLMCFLYVLKSMSDDALFTYWNKASTAELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQLGSLDNSVTFNHSYGHSEADVVHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSAFYEGRADMCASLCYEVLKCCNSKLSSIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRIIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQAAQYQFTDSETDVEGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERRTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMAKELSDIMREQMG", "length": 2055 }, "evidence": [ { "id": "A0A9J7EY50", "url": "https://omabrowser.org/oma/group/A0A9J7EY50/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BZ29-1", "protein_name": "Dedicator of cytokinesis protein 9", "gene_name": "DOCK9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSQPPLLPASAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYICSTVPAKAEEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVVKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDSHEDDEQSKLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKSFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPALMNGSGQSPSVLKGILHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHCAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSAIYRQDSNKLSNDDMLKLLADFRKPEKMAKLPVILGNLDITIDNVSSDFPNYVNSSYIPTKQFETCSKTPITFEVEEFVPCIPKHTQPYTIYTNHLYVYPKYLKYDSQKSFAKARNIAICIEFKDSDEEDSQPLKCIYGRPGGPVFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSSKGSTKKRDVVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYLGYQELGMGRHYGPEIKWVDGGKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGNELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNAGMTVKDESLALPAVNPLVTPQKGSTLDNSLHKDLLGAISGIASPYTTSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQSSTLGNSVVRCDKLDQSEIKSLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQLGSLDNSLTFNHSYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCAALCYEILKCCNSKLSSIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEAVQWEPPLLPHSHSACLRRSRGGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQAAQYQFTDSETDVEGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVIPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMAKELSEIMHEQLG", "length": 2069 }, "evidence": [ { "id": "A0A9J7EY50", "url": "https://omabrowser.org/oma/group/A0A9J7EY50/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EY50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EY50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EY50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1032, "end_pos": 1034, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1386, "end_pos": 1388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1408, "end_pos": 1410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 600, "end_pos": 602, "annotation": "n_glycosylation_sequon" }, { "start_pos": 610, "end_pos": 612, "annotation": "n_glycosylation_sequon" }, { "start_pos": 748, "end_pos": 750, "annotation": "n_glycosylation_sequon" }, { "start_pos": 899, "end_pos": 901, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EY50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" }, { "id": "PS51650", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51650" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 DOCK-type", "eco_id": "ECO_0000259", "start_pos": 649, "end_pos": 827, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7EY50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" }, { "id": "PS51651", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51651" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOCKER", "eco_id": "ECO_0000259", "start_pos": 1637, "end_pos": 2090, "start_aa": "Lys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7EY50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY50" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 185, "end_pos": 292, "start_aa": "Gly", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1032, "end_pos": 1034 }, { "start_pos": 1386, "end_pos": 1388 }, { "start_pos": 1408, "end_pos": 1410 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 600, "end_pos": 602 }, { "start_pos": 610, "end_pos": 612 }, { "start_pos": 748, "end_pos": 750 }, { "start_pos": 899, "end_pos": 901 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F512-1", "uniprot_ac": "A0A9J7F512", "uniprot_id": "A0A9J7F512_CRIGR", "mass": { "chemical_mass": 189420.0, "monoisotopic_mass": 189420.0 }, "refseq": { "ac": "XP_007639705", "name": "protein MON2 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639705" }, "gene_names": [ { "name": "Mon2", "type": "recommended", "evidence": [ { "id": "A0A9J7F512", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512" } ] }, { "name": "Mon2", "type": "synonym", "evidence": [ { "id": "XP_007639705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639705" } ] } ], "protein_names": [ { "name": "Protein MON2 homolog", "type": "recommended", "evidence": [ { "id": "A0A9J7F512", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512/entry#names_and_taxonomy" } ] }, { "name": "protein MON2 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007639705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639705" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 378 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613811.1) and transcript sequence (IACG01036131.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007639705.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639705", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639705" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F512", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mon2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512", "locus": {} } ], "crossref": [ { "id": "100758745", "url": "https://www.ncbi.nlm.nih.gov/gene/100758745", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758745", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758745", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F512", "url": "https://www.orthodb.org/?gene=A0A9J7F512", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663:SF333", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663:SF333", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16206", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16206", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639705", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639705", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M243", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M243", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M243-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M243-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F512", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F512-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHKDIEPPVLIQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPAAANQAGNNNAGGPVSAPASSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECPTVTEGANSQSSEQHDEQSVSDQADKETVSRAVWEEMVSACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNATTAATLSNKSYSIQGHSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSGGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHEPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCSCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVSLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSEKPETPPVVNVPVPVLMGSISGPGLSRPFVRTDSIGDKLGRYSSEPPIVTDELEDLSLWWAAWNAWYRIGSESTKPPITFDKLTFIPSQPFLTALIQIFPALYQHIKAGFNMDDLHKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVASLLKVLSIGLPVARQHASSGKFDSMWPELASTLEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISAEILPYANLIPRAFVGQMMTMLNRGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCCALKEALVPFKDFMQPPASKVQNGES", "length": 1715, "header": "tr|A0A9J7F512-1|A0A9J7F512_CRIGR Isoform 1 of Protein MON2 homolog OS=Cricetulus griseus OX=10029 GN=Mon2 PE=3 SV=1 CANONICAL=A0A9J7F512-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M243-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M243/entry", "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHKDIEPPVLIQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPAAANQAGNNNAGGPVSAPASSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECPTVTEGANSQSSEQHDEQSVSDQADKETVSRAVWEEMVSACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNATTAATLSNKSYSIQGHSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSGGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHEPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCSCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVSLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSEKPETPPVVNVPVPVLMGSISGPGLSRPFVRTDSIGDKLGRYSSEPPIVTDELEDLSLWWAAWNAWYRIGSESTKPPITFDKLTFIPSQPFLTALIQIFPALYQHIKAGFNMDDLHKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVASLLKVLSIGLPVARQHASSGKFDSMWPELASTLEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISAEILPYANLIPRAFVGQMMTMLNRGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCCALKEALVPFKDFMQPPASKVQNGES", "length": 1709, "header": "tr|A0A8C2M243-1|A0A9J7F512_CRIGR Computationally mapped isoform of Protein MON2 homolog OS=Cricetulus griseus OX=10029 GN=Mon2 PE=3 SV=1 CANONICAL=A0A9J7F512-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F512-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512/entry", "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKENSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHKDIEPPVLIQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPAAANQAGNNNAGGPVSAPASSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECPTVTEGANSQSSEQHDEQSVSDQADKETVSRAVWEEMVSACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNATTAATLSNKSYSIQGHSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSGGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHEPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCSCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVSLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSEKPETPPVVNVPVPVLMGSISGPGLSRPFVRTDSIGDKLGRYSSEPPIVTDELEDLSLWWAAWNAWYRIGSESTKPPITFDKLTFIPSQPFLTALIQIFPALYQHIKAGFNMDDLHKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVASLLKVLSIGLPVARQHASSGKFDSMWPELASTLEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISAEILPYANLIPRAFVGQMMTMLNRGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCCALKEALVPFKDFMQPPASKVQNGES", "length": 1715, "header": "tr|A0A9J7F512-1|A0A9J7F512_CRIGR Isoform 1 of Protein MON2 homolog OS=Cricetulus griseus OX=10029 GN=Mon2 PE=3 SV=1 CANONICAL=A0A9J7F512-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M243", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M243" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M243", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M243" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758745", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F512", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1508, "end_pos": 1510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1517, "end_pos": 1519, "annotation": "n_glycosylation_sequon" }, { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 620, "end_pos": 622, "annotation": "n_glycosylation_sequon" }, { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 960, "end_pos": 962, "annotation": "n_glycosylation_sequon" }, { "start_pos": 971, "end_pos": 973, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F512", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512" }, { "id": "PF16206", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16206" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 931, "end_pos": 1706, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F512", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512" }, { "id": "PF09324", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09324" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like HDS", "eco_id": "ECO_0000259", "start_pos": 848, "end_pos": 927, "start_aa": "His", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F512", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512" }, { "id": "PF12783", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12783" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like HUS", "eco_id": "ECO_0000259", "start_pos": 211, "end_pos": 384, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F512", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F512" }, { "id": "PF16213", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16213" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like dimerisation and cyclophilin-binding", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 184, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1508, "end_pos": 1510 }, { "start_pos": 1517, "end_pos": 1519 }, { "start_pos": 159, "end_pos": 161 }, { "start_pos": 162, "end_pos": 164 }, { "start_pos": 620, "end_pos": 622 }, { "start_pos": 629, "end_pos": 631 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 960, "end_pos": 962 }, { "start_pos": 971, "end_pos": 973 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"yes" } }, { "uniprot_canonical_ac": "A0A9J7F1M2-1", "uniprot_ac": "A0A9J7F1M2", "uniprot_id": "A0A9J7F1M2_CRIGR", "mass": { "chemical_mass": 87716.0, "monoisotopic_mass": 87716.0 }, "refseq": { "ac": "XP_016829897", "name": "integrator complex subunit 10 isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829897" }, "gene_names": [ { "name": "Ints10", "type": "recommended", "evidence": [ { "id": "A0A9J7F1M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2" } ] }, { "name": "Ints10", "type": "synonym", "evidence": [ { "id": "XP_016829897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829897" } ] } ], "protein_names": [ { "name": "Integrator complex subunit 10", "type": "recommended", "evidence": [ { "id": "A0A9J7F1M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2/entry#names_and_taxonomy" } ] }, { "name": "integrator complex subunit 10 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_016829897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829897" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613760.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016829897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829897" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1M2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ints10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2", "locus": {} } ], "crossref": [ { "id": "A0A9J7F1M2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F1M2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755256", "url": "https://www.ncbi.nlm.nih.gov/gene/100755256", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755256", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755256", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FYVKMFQ", "url": "https://omabrowser.org/oma/group/FYVKMFQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M5H2", "url": "https://www.orthodb.org/?gene=A0A8C2M5H2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M982", "url": "https://www.orthodb.org/?gene=A0A8C2M982", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EW80", "url": "https://www.orthodb.org/?gene=A0A9J7EW80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F1M2", "url": "https://www.orthodb.org/?gene=A0A9J7F1M2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J8H2", "url": "https://www.orthodb.org/?gene=A0A9J7J8H2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16055:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16055:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21045", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21045", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016829897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829897", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5H2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5H2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5H2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M982", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M982", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M982-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M982-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EW80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EW80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1M2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8H2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2Z2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2Z2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLINHCRPFGWSLQMSGRDVVSSVPLLPLGPSSPPMGLLQQEFLPVLQPSIQTADRHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 762, "header": "tr|A0A9J7F1M2-1|A0A9J7F1M2_CRIGR Isoform 1 of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5H2/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLINHCRPFGWSLQMSGRDVVSSVPLLPLGHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 736, "header": "tr|A0A8C2M5H2-1|A0A9J7F1M2_CRIGR Computationally mapped isoform of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} }, { "isoform_ac": "A0A8C2M982-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M982/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 710, "header": "tr|A0A8C2M982-1|A0A9J7F1M2_CRIGR Computationally mapped isoform of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EW80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW80/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMQSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLINHCRPFGWSLQMSGRDVVSSVPLLPLGHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 737, "header": "tr|A0A9J7EW80-1|A0A9J7EW80_CRIGR Computationally mapped isoform of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLINHCRPFGWSLQMSGRDVVSSVPLLPLGPSSPPMGLLQQEFLPVLQPSIQTADRHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 762, "header": "tr|A0A9J7F1M2-1|A0A9J7F1M2_CRIGR Isoform 1 of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA74/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMQSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKFQTNSLKPLQTFWVVPPDEWQRCCEQCTSPPLGAPHSHSRHHQRCEGGLPPGHGTPGLPLWREPDGGTASLLH", "length": 733, "header": "tr|A0A9J7HA74-1|A0A9J7HA74_CRIGR Computationally mapped isoform of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H2/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMQSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 711, "header": "tr|A0A9J7J8H2-1|A0A9J7J8H2_CRIGR Computationally mapped isoform of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2Z2/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMQSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLINHCRPFGWSLQMSGRDVVSSVPLLPLGPSSPPMGLLQQEFLPVLQPSIQTADRYQVENTCS", "length": 720, "header": "tr|A0A9J7K2Z2-1|A0A9J7K2Z2_CRIGR Computationally mapped isoform of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE49/entry", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTSTAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAQDTSDLMSPSKRNSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQVDKGRRSCSDILHRMKELCRYMSSFDSEAHANYKNQVLYSTMLVFFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRSKHIHKKRKLAEGREKTMQSSDDEDCSAKGRNRHIIVSKAELSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKFRKGLDLKLLPCTSKALMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKFQTNSLKPLQTFWVVPPDEWQRCCEQCTSPPLGAF", "length": 695, "header": "tr|A0A9J7KE49-1|A0A9J7KE49_CRIGR Computationally mapped isoform of Integrator complex subunit 10 OS=Cricetulus griseus OX=10029 GN=Ints10 PE=3 SV=1 CANONICAL=A0A9J7F1M2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 716, "start_aa": "Thr", "end_pos": 716, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr716", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5H2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5H2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5H2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5H2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755256", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755256", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M081-1", "protein_name": "Integrator complex subunit 10", "gene_name": "Ints10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTIREMEIQSSGVSRGLSRAAAACDWLVSGHAQWPRQGWWCSEYPPEGLEVGAMSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQLENQHQGAPDTSDLMSPSKRSSQKYIIEGLTEKSSHIVDPWERLFKILNVVGMRCEWQMDKGRRSCSDMLHRMKELCRYMNSFDSEAHTKYKNQVLYSTMLVLFKSAFQYISSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEIDRSKHIHKKRKLAEGREKTMSSDDEECSAKGRNRHIVVSKADLSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKVKPKCRKGLDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLINHCRPFGWSLQMSGRDVVSSVPLLPLGPSSPPMGLLQQEFLPVLQPSIQTADRHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 815 }, "evidence": [ { "id": "A0A9J7F1M2", "url": "https://omabrowser.org/oma/group/A0A9J7F1M2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6TNU3-1", "protein_name": "Integrator complex subunit 10", "gene_name": "ints10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSAQGDCEFLVKRARELVPQDPYAAKAWLITARTLYPTDFNIQYEMYSIERNAERTSSAGRLLYDIFVNFPDQPVVWREISAITAALRNDSQDKHAQFLKGVFETLPGQVQCKMLLKATEQCFNTLEKAEMLLLLLKRFPESVVQHGVSLGESLLEAESVEDLETPVNCFRKLFVCDVLPLILNNPEMCLPVSLLYKYLHKAAEFYICYVTREPSADGQMQGSQEVGGLNSPGRGRGQRSVIDGLSDKASVVTEPWDRLLEMVGVVGSLCDWQGEKGSRSYAELLQRVSDLCRFLSAADADGFSRCCSQIVSCCTLVLFHCAFHYVSAVQPSLFQGHSSLSSGPWVLLEDLSSVYADVEVERKHTHKKRKLADGREKTMSSDDEDVLAKGRGRHIVVSKSEMLNWAETLDHFRTARESWDLLHSHPSLEAEFAKICSAWKTEMWLWFRIFLTDMIIYQGQYRKALSSLALMSSLQLQQNQNQNQNSLQTGSSSSLENHRAVIQQASCHYALGEYRLACEKLLEAVGGLLPQNQEFVKSSDEQRKPRSKTRRGNDLRLVPCTSKSILPFCLQLMLACFKLRAFTDNRDDLALGHVIVLLQFDWPQGESLFLKAVDKICQQGSFQYENFFNYVTNIDMLEEFAYLRTTEGGRVQLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQVSRCGENLLMVLHRFCINEKIILIQSLP", "length": 715 }, "evidence": [ { "id": "A0A9J7F1M2", "url": "https://omabrowser.org/oma/group/A0A9J7F1M2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8K2A7-1", "protein_name": "Integrator complex subunit 10", "gene_name": "Ints10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQDSPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQSENQHQGAQDTSDLMSPSKRSSQKYIIEGLTEKSSHIVDPWERLFKILNVVGMRCEWQMDKGRRSCSDLLHRMKELCRYMNSFDSEAHNNYKNQVLYSTMLVFFKSAFQYVSSIQPSLFQGPNAPSQVPLILLEDVANVYGDVEIDRSKHIHKKRKLAEGREKTMSSDDEECSAKGRNRHIVVSKADLSNSIEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKCRKGLDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQVSRCGENLMAVLHRFCINEKILLLQTLT", "length": 710 }, "evidence": [ { "id": "A0A9J7F1M2", "url": "https://omabrowser.org/oma/group/A0A9J7F1M2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVR2-1", "protein_name": "Integrator complex subunit 10", "gene_name": "INTS10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQDTSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQMDKGRRSYGDILHRMKDLCRYMNNFDSEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLEDVSNVYGDVEIDRNKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIVVNKAELANSTEVLESFKLARESWELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSISQPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKVKPKFRKGSDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAVNKICQQGNFQYENFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT", "length": 710 }, "evidence": [ { "id": "A0A9J7F1M2", "url": "https://omabrowser.org/oma/group/A0A9J7F1M2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VZM7-1", "protein_name": "Integrator complex subunit 10", "gene_name": "IntS10", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPSQEENELYMVKEAQRLRKSDPCAAMAWIITAKTLYPNAFNLQYEAYLLERDAQNYEEAAKCFSAIATNFQNQHTELWQEINSLTNALRNENETTPEHEFYVKMYKHLTPEVQHNIFMHTINHSADNLERIYIYILMFNKFPKSAITQAPRLLEMLAEGMKTEPDLYQRILVEEVLPMIQNKPPELSPNLACRLYTSSLEFYLRQIMDESDTADAWKNIFKVLMICGQMMGWEPFLPFSKHVNQNVYWEKLVDILSGSPAGSSQVLFYATTLFIYSLHGYIRNCKLRIEDADVTHVLVEGFMEWSPEGDGSEVPSMEPPKFSLTTAISPELSKAFLHAAQCWQLLNTDQFQRDFSQLMLALPLAPWISRFLFDLAIYFGHRDEANKLMADMTTQSSLVQSLQILSLNLMQGSMTLQGFQCILKILSELPTTQGQLLENMSLKGHRHMVFLPLTRSALVQYCVGAIISRLSRKVFEPNVPDRLLGDILVLQQLNLLNDVLLTQQIFNLIKQRKSFNLRTLSTYIINIDLLEELSHIWNSQQEDNFELTSSPNSSGTPTATTVAGGSQSRRIGTRGADKGARDEFRAITRQQIARCNENVITLLANFINQEHLMLAQHIFGISQPVETIVIK", "length": 631 }, "evidence": [ { "id": "A0A9J7F1M2", "url": "https://omabrowser.org/oma/group/A0A9J7F1M2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "snRNA processing", "id": "GO:0016180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016180", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1M2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "integrator complex", "id": "GO:0032039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032039", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1M2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1M2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 716 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EWT5-1", "uniprot_ac": "A0A9J7EWT5", "uniprot_id": "A0A9J7EWT5_CRIGR", "mass": { "chemical_mass": 73922.0, "monoisotopic_mass": 73922.0 }, "refseq": { "ac": "XP_007648280", "name": "protein FAM149B1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648280" }, "gene_names": [ { "name": "Fam149b1", "type": "recommended", "evidence": [ { "id": "A0A9J7EWT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5" } ] }, { "name": "Fam149b1", "type": "synonym", "evidence": [ { "id": "XP_007648280", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648280" } ] } ], "protein_names": [ { "name": "Protein FAM149B1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7EWT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5/entry#names_and_taxonomy" } ] }, { "name": "protein FAM149B1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007648280", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648280" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614720.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007648280", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648280" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam149b1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5", "locus": {} } ], "crossref": [ { "id": "A0A9J7EWT5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EWT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761680", "url": "https://www.ncbi.nlm.nih.gov/gene/100761680", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761680", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761680", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EREEDCI", "url": "https://omabrowser.org/oma/group/EREEDCI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M5J0", "url": "https://www.orthodb.org/?gene=A0A8C2M5J0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EUK9", "url": "https://www.orthodb.org/?gene=A0A9J7EUK9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EWT5", "url": "https://www.orthodb.org/?gene=A0A9J7EWT5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F0A7", "url": "https://www.orthodb.org/?gene=A0A9J7F0A7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31997", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31997", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31997:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31997:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007648280", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648280", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5J0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5J0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EUK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EUK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EUK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EUK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EWT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EWT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0A7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0A7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISRYTRKAVPQCVELKGRTKHALNHHPLPEQLDDISSTNDSHEKDTSTQSESDITQESPFTSTDTGNSHSAFPSYAGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTQSLQRECQQWASSFPHLRILGRQMITPCEGYGLYPRSPSAVSASHDSTLSQERDSTIFGIRGKKLHFSSYAHKACLSIKPSGLSAVEGEEVDCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKVVGCMEQLTRSHWEGFASDDESNIEIARMDSGSPCMLNEQHPLVLPRVPQSKVLSITSNPMSFCQASGHQPNVNGLLVHGMPLQPRNLSLMDKLLDIDDKLLMRPGSSSVLSNRNWPNRALELSTSSLSYTAQSARRRNPPPRTLHPISTSHSRAGTPWPAEEILRGSRGPVTADTLSSPSSMPLGRNNLLPPIGTAEVEHLSTLGPQRPSKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRNSCASEFPHQARPGRGSAENPRFPAPMSGNSQPPVSPDPRDQTPSSCPHKYLHKCGTHSQVLSYMGLQNLKAEVDPSLEAGSDHGAGENPQGCSRLQIHGGFHAPALRHQMMQSSYKQQLGPSSRVISVQLSEIH", "length": 672, "header": "tr|A0A9J7EWT5-1|A0A9J7EWT5_CRIGR Isoform 1 of Protein FAM149B1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam149b1 PE=3 SV=1 CANONICAL=A0A9J7EWT5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5J0/entry", "sequence": { "sequence": "MISRYTRKAVPQCVELKGRTKHALNHHPLPEQLDDISSTNDSHEKDTSTQSESDITQESPFTSTDTGNSHSAFPSYAGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTQSLQRECQQWASSFPHLRILGRQMITPCEGYGLYPRSPSAVSASHDSTLSQERDSTIFGIRGKKLHFSSYAHKACLSIKPSGLSAVEGEEVDCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKVVGCMEQLTRSHWEGFASDDESNIEIARMDSGSPCMLNEQHPLVLPRVPQSKVLSITSNPMSFCQASGHQPNVNGLLVHGMPLQPRNLSLMDKLLDIDDKLLMRPGSSSVLSNRNWPNRALELSTSSLSYTAQSARRRNPPPRTLHPISTSHSRAGTPWPAEEILRGSRGPVTADTLSSPSSMPLGRNNLLPPIGTAEVEHLSTLGPQRPSKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRNSCASEFPHQARPGRGSAGPQLHGSTKPQSRGGPISRSRQ", "length": 577, "header": "tr|A0A8C2M5J0-1|A0A9J7EWT5_CRIGR Computationally mapped isoform of Protein FAM149B1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam149b1 PE=3 SV=1 CANONICAL=A0A9J7EWT5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EUK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EUK9/entry", "sequence": { "sequence": "MISRYTRKAVPQCVELKGRTKHALNHHPLPEQLDDISSTNDSHEKDTSTQSESDITQESPFTSTDTGNSHSAFPSYAGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTQSLQRECQQWASSFPHLRILGRQMITPCEGYGLYPRSPSAVSASHDSTLSQERDSTIFGIRGKKLHFSSYAHKACLSIKPSGLSAVEGEEVDCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKVVGCMEQLTRSHWEGFASDDESNIEIARMDSGSPCMLNEQHPLVLPRVPQSKVLSITSNPMSFCQASGHQPNVNGLLVHGMPLQPRNLSLMDKLLDIDDKLLMRPGSSSVLSNRNWPNRALELSTSSLSYTAQSARRRNPPPRTLHPISTSHSRAGTPWPAEEILRGSRGPVTADTLSSPSSMPLGRNNLLPPIGTAEVEHLSTLGPQRPSKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRNSCASEFPHQARPGRGSAGTGPQLHGSTKPQSRGGPISRSRQ", "length": 579, "header": "tr|A0A9J7EUK9-1|A0A9J7EUK9_CRIGR Computationally mapped isoform of Protein FAM149B1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam149b1 PE=3 SV=1 CANONICAL=A0A9J7EWT5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EWT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5/entry", "sequence": { "sequence": "MISRYTRKAVPQCVELKGRTKHALNHHPLPEQLDDISSTNDSHEKDTSTQSESDITQESPFTSTDTGNSHSAFPSYAGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTQSLQRECQQWASSFPHLRILGRQMITPCEGYGLYPRSPSAVSASHDSTLSQERDSTIFGIRGKKLHFSSYAHKACLSIKPSGLSAVEGEEVDCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKVVGCMEQLTRSHWEGFASDDESNIEIARMDSGSPCMLNEQHPLVLPRVPQSKVLSITSNPMSFCQASGHQPNVNGLLVHGMPLQPRNLSLMDKLLDIDDKLLMRPGSSSVLSNRNWPNRALELSTSSLSYTAQSARRRNPPPRTLHPISTSHSRAGTPWPAEEILRGSRGPVTADTLSSPSSMPLGRNNLLPPIGTAEVEHLSTLGPQRPSKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRNSCASEFPHQARPGRGSAENPRFPAPMSGNSQPPVSPDPRDQTPSSCPHKYLHKCGTHSQVLSYMGLQNLKAEVDPSLEAGSDHGAGENPQGCSRLQIHGGFHAPALRHQMMQSSYKQQLGPSSRVISVQLSEIH", "length": 672, "header": "tr|A0A9J7EWT5-1|A0A9J7EWT5_CRIGR Isoform 1 of Protein FAM149B1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam149b1 PE=3 SV=1 CANONICAL=A0A9J7EWT5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZD0/entry", "sequence": { "sequence": "MISRYTRKAVPQCVELKGRTKHALNHHPLPEQLDDISSTNDSHEKDTSTQSESDITQESPFTSTDTGNSHSAFPSYAGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTQSLQRECQQWASSFPHLRILGRQMITPCEGYGLYPRSPSAVSASHDSTLSQERDSTIFGIRGKKLHFSSYAHKACLSIKPSGLSAVEGEEVDCIIFSEGIIEEYLAFDHTDIDIDDKLLMRPGSSSVLSNRNWPNRALELSTSSLSYTAQSARRRNPPPRTLHPISTSHSRAGTPWPAEEILRGSRGPVTADTLSSPSSMPLGRNNLLPPIGTAEVEHLSTLGPQRPSKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRNSCASEFPHQARPGRGSAENPRFPAPMSGNSQPPVSPDPRDQTPSSCPHKYLHKCGTHSQVLSYMGLQNLKAEVDPSLEAGSDHGAGENPQGCSRLQIHGGFHAPALRHQMMQSSYKQQLGPSSRVISVQLSEIH", "length": 533, "header": "tr|A0A9J7EZD0-1|A0A9J7EZD0_CRIGR Computationally mapped isoform of Protein FAM149B1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam149b1 PE=3 SV=1 CANONICAL=A0A9J7EWT5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0A7/entry", "sequence": { "sequence": "MISRYTRKAVPQCVELKGRTKHALNHHPLPEQLDDISSTNDSHEKDTSTQSESDITQESPFTSTDTGNSHSAFPSYAGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTQSLQRECQQWASSFPHLRILGRQMITPCEGYGLYPRSPSAVSASHDSTLSQERDSTIFGIRGKKLHFSSYAHKACLSIKPSGLSAVEGEEVDCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKVVGCMEQLTRSHWEGFASDDESNIEIARMDSGSPCMLNEQHPLVLPRVPQSKVLSITSNPMSFCQASGHQPNVNGLLVHGMPLQPRNLSLMDKLLDIDDKLLMRPGSSSVLSNRNWPNRALELSTSSLSYTAQSARRRNPPPRTLHPISTSHSRAGTPWPAEEILRGSRGPVTADTLSSPSSMPLGRNNLLPPIGTAEVEHLSTLGPQRPSKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLVLSYMGLQNLKAEVDPSLEAGSDHGAGENPQGCSRLQIHGGFHAPALRHQMMQSSYKQQLGPSSRVISVQLSEIH", "length": 606, "header": "tr|A0A9J7F0A7-1|A0A9J7F0A7_CRIGR Computationally mapped isoform of Protein FAM149B1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam149b1 PE=3 SV=1 CANONICAL=A0A9J7EWT5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5J0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5J0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5J0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5J0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761680", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287ASH1-1", "protein_name": "Family with sequence similarity 149 member B1", "gene_name": "FAM149B1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MISRYTRKAVPQNLELKGITKHALNHHPLPEQLDEISSTNDSHEKDTSSQSESDITQESPFTSADTGNSRSAFPSYTGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTKSLQEECQQWTCSFPHLRILGRQIITPSEGYRLYPRSPSAVSASHEATLSQERDSTIFGIRGKKLHFSSSYAPKGSSIAKSPSLCSTEREEEDCIIFSEGVIEEYLAFDHTDMEEGFHGKKSEATTEKQKLGYPPIAPFYCMKEDVLAYVFDDVWSKVLSCMEQLTRSHWEGCASDDESNTAITRPASESPFVLSEPQPLVLPRVPQSKVLSITSNPMSLCQAASGHPPNVNGLLVHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSNILSTRNWPNRALELSTSFLSYTVQSARRRNPPPRTLHPISTSHSCAGTPRPVEEILRGSRVPVVVDSLSSPSPLPLSRNNLLPPIGTAEAEHLSTVGPQRQMKTHGDSSRARSAVVDEPNHQQPQEKLLLPDFFSRPNTTQSFLPDTRYHRSFAAEYPQQARSGRGSAGTGPQLHGSTKSQNRGGPISRTRQGP", "length": 585 }, "evidence": [ { "id": "A0A9J7EWT5", "url": "https://omabrowser.org/oma/group/A0A9J7EWT5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0XVC3-1", "protein_name": "Family with sequence similarity 149 member B1", "gene_name": "FAM149B1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MISRYARKPVPPGALQPQGLTQHAVRHHPLPEPSPITPTSESCPGASSESEISKESDYPSVTPTDDGNSWSASPSYAGTSTEDSSIFSWGYDEFDKAATQQVQNMFRQLDELLYEQKENVHVEGLQEECQQWTSNFPHLRVVGKQIVIPKDEGYEWYSSSPSASLGSSDVSPSQEEGSNEFSVFGKKVPLSVSPVLKKADRSKSPTSCSPDSEEGEDGVIVSEGIMEEYLAFDCRDVEEELHERKIRLSSSRRKLGFPPISPYSCMKDSVLAFVFDDVWSEVLGCMEELISRHWEVSASDDEKNIIKVEAIRADSGSPQQFDPPPVLLPRVPQTKMPSVTSNLCPKPRCGRKTKKRRKPPQVNQGSHSGSQRNLNGLIVIHGIHLQQRNLPVMEKTLDLDDKRPGSSSVLSNKAWPNRPPLELSTSPLSHSSKRRNPPPRTLHPIGTSQSRTATPRSVDDVFRGPRFLTAHEQLTSPSPLLLNRNSLLPPIGTTDVAEHASTAGSQRQTKSRGNSSRAHSVTTHEDTHQQLHERLFLPDHFSRPKTTNVFLPDPQHRRSCTVIDYGNHAWTSRASAGSGLQPHGSVKGQSRSGSVTKSKQGF", "length": 602 }, "evidence": [ { "id": "A0A9J7EWT5", "url": "https://omabrowser.org/oma/group/A0A9J7EWT5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0JNF3-1", "protein_name": "Primary cilium assembly protein FAM149B1", "gene_name": "FAM149B1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELDQNATEKVQAMFTAIDELLYEQELSVHTKSLREECQQWTRSFPHLRILGRQIITPSEGYGLYPRSPSAVSASREATLSQERDSTIFGIRGKKLHFSSSYGPKASSIAKSPCLCSMEREEDCIIFSEGIIEEYLAFDHTDMEEEFHGKKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDDVWSKVLSCMEQLTRTHWEGFASDDESNVAITRPASQSPCVLSELQPLVLPRVPQSKVLSVTSHPMSLCQAASGHQPNVNGLLVHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSTIFSTRNWPNRALKLSTSFLSYTVQSARRRNPPPRTLHPISTSHSRAGTPRLMDEIRRGSRVPVAADSLSSPSPLPLSRNNLLPPIGTAEAEHLSTVGPQRQTKTHSDSSRARSAVVDEPNHQQPQEKLLLPDFFSRPNTTQSFLPDTQYRRVCAAEYPHQARPGRGSAGTGPQLHGSTKSQNRSGPISRTRQGP", "length": 491 }, "evidence": [ { "id": "A0A9J7EWT5", "url": "https://omabrowser.org/oma/group/A0A9J7EWT5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5PQL8-1", "protein_name": "Primary cilium assembly protein FAM149B1", "gene_name": "Fam149b1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELDQNATEKVKAMFTAIDELLYEQKPSVHTQSLQKECQQWASSFPHLRILGRQIITSSEGYGLYPRSPSAVSASHEAILPQERESTIFGIRGKKLHFSSSYKASPSTKASGSSADGEEADCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKAVGCMEQLTRSHWEGFASDDESNVEITRLDSGSPYMLNEQQPLVLPRVPQSKVMSVTSNPMNFCQASGHQPNVNGLLIHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSSVLSNRNWPNRAMELSTSSLSYTTQSARRRNPPPRTLHPISTSHSRTGTPWPAEEILRGPRLPMTADSLSSPSPMTMGRNNLLPPIGTADVEHLSILGSQRPTKPHGDSSRARSAAVDEPNQQPQERLLLPVFSRPNTTQSFLPETQYRSSCASECPHHARPGRGSAGPQSHGSTKPQSRGGPISRTRQ", "length": 482 }, "evidence": [ { "id": "A0A9J7EWT5", "url": "https://omabrowser.org/oma/group/A0A9J7EWT5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NSV7-1", "protein_name": "Primary cilium assembly protein FAM149B1", "gene_name": "Fam149b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MISRYTRKAVPQSVELKGLTKHALNHHPLPERLDDISSTNNSHGKDTSSHSESDITQESPITSTDTGNSNSRSAFPSYAGTGVSTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQQLSAHTQGLQKECQQWAASFPHLRILGRQIITPSEGYGLYPRSPSAVSASHEATLSQERESTIFGIRGKKLHFSSSYKPSPTIKASGLCAVGGEEADCIIFSEGVIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFHCMKEDVLAHVFDNVWSKAVGCMEQLTRSHWEGCASDDESNVEITRLDSGSPYVLNEQHPLVLPRVPQSKVPSITSSPMSFCQASGHQPNVSGLLIHGMPLQPRNLSLMDKLLDLDDKLLTRPGSSSVLSNRNWPNRAMELSTSSLSYTTQSARRRNPPPRTLHPISTSHSRAGTPWPVEEILRGPRVPVTADTLSSPSPMTLGRNNLLPPIGTVEVEHLSAMGPQRPTKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRSSCASEYPHQARPGRGSAGPQSHGSTKPQSRGGPISRTRQ", "length": 578 }, "evidence": [ { "id": "A0A9J7EWT5", "url": "https://omabrowser.org/oma/group/A0A9J7EWT5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96BN6-1", "protein_name": "Primary cilium assembly protein FAM149B1", "gene_name": "FAM149B1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MISRYTRKAVPQSLELKGITKHALNHHPPPEKLEEISPTSDSHEKDTSSQSKSDITRESSFTSADTGNSLSAFPSYTGAGISTEGSSDFSWGYGELDQNATEKVQTMFTAIDELLYEQKLSVHTKSLQEECQQWTASFPHLRILGRQIITPSEGYRLYPRSPSAVSASYETTLSQERDSTIFGIRGKKLHFSSSYAHKASSIAKSSSFCSMERDEEDSIIVSEGIIEEYLAFDHIDIEEGFHGKKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDSVWCKVVSCMEQLTRSHWEGFASDDESNVAVTRPDSESSCVLSELHPLVLPRVPQSKVLYITSNPMSLCQASRHQPNVNDLLVHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSTILSTRNWPNRAVEFSTSSLSYTVQSTRRRNPPPRTLHPISTSHSCAETPRSVEEILRGARVPVAPDSLSSPSPTPLSRNNLLPPIGTAEVEHVSTVGPQRQMKPHGDSSRAQSAVVDEPNYQQPQERLLLPDFFPRPNTTQSFLLDTQYRRSCAVEYPHQARPGRGSAGPQLHGSTKSQSGGRPVSRTRQGP", "length": 582 }, "evidence": [ { "id": "A0A9J7EWT5", "url": "https://omabrowser.org/oma/group/A0A9J7EWT5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5" } ], "pmid": "" }, { "name": "protein localization to cilium", "id": "GO:0061512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061512", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EWT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWT5" }, { "id": "PF12516", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12516" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF3719", "eco_id": "ECO_0000259", "start_pos": 114, "end_pos": 179, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 243, "end_pos": 245 }, { "start_pos": 367, "end_pos": 369 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 525, "end_pos": 527 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EVS3-1", "uniprot_ac": "A0A9J7EVS3", "uniprot_id": "A0A9J7EVS3_CRIGR", "mass": { "chemical_mass": 133908.0, "monoisotopic_mass": 133908.0 }, "refseq": { "ac": "XP_027244296", "name": "AF4/FMR2 family member 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244296" }, "gene_names": [ { "name": "Aff1", "type": "recommended", "evidence": [ { "id": "A0A9J7EVS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3" } ] }, { "name": "Aff1", "type": "synonym", "evidence": [ { "id": "XP_027244296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244296" } ] } ], "protein_names": [ { "name": "AF4/FMR2 family member 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027244296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244296" }, { "id": "A0A9J7EVS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244296" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Aff1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3", "locus": {} } ], "crossref": [ { "id": "100751914", "url": "https://www.ncbi.nlm.nih.gov/gene/100751914", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043639", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043639", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043640", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043640", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751914", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751914", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EVS3", "url": "https://www.orthodb.org/?gene=A0A9J7EVS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10528", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10528", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10528:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10528:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05110", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05110", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18875", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18875", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18876", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18876", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244296", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCA7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEK5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFKNSSSSSNSSDSASSSLYNEDRNLLRIREKERRNQEAHAEKEVFAEKAPLFAEPYKTAKGDELSSRIQNMLGDYEEMKEFLSTKSCSKRLEGSEDRPGKPKYPLFHDRGSSIPSSSFRTHVYHQPIHTSSVPGPLSVGNISHSPKMAPPRMEPVPSLHAKNYGPPDSQRLTQDRLSQEGHCSNHTKCDRRADGDSAPEMKLSPLISSLPSPVPPLSPVHSRLQGSSKVPGGSTSNKSYNVATSSKDLVGKVQDNETPHDSLVAATSLGVAPSQPPSQTFPPPPLPSKSVAMQQKPTAYVRPMDGQDQAPSESPELKPPLEDYGQQSFEKPDVKVPAKAKLTRLRMPSQEVEQAFSSEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSRFPFPTKDPLHISSATQSQKQYDAPSKTHHSSQQGTSMLEDDLQLSDSEDSDTEQATEKPPSPSAPTSAPLTLPQPAVSAHSSSAESESSASDSSSDSESESSSSDSEENEPREAPAPEPEPPSTNKWQLDNWLTKVNQPSVPLDGRGSTESPRWRQENKDGDCGTDQQHPMSKDPLPKISNRAPRGPTEGSQPGKRNCQKSPAQQEPAPRQTIGTKQPRKPAKGSGQAEPQASSQAESEPGSLPYGSKEQTPKDKPKVKTKGRPRAVGNREPKPEAPVPKPQAAVPTPTEKKKHKSSPAPSKTLSDPQPPKDNAGDRNPEHFTLVSLTQSQGPPHSGRGGGSSSSNSSIRTSGCRQAVIIQEDGRKDRLLLPLRDTKLLSPLRDTPPPTSLVVKITLDLLTRIPQPSGKGGRSRKTEDKQLPSAKKQDTEKRSCDPSSKATKKRKQSDADKDHDNKKIRLEKDIQSHCTASSFSHSESSKTKTPRTSSESSKKEMLPPPPVLSSSSSSSSSQKSIKTSHKRSKPDADSCSQDPPKRASSTKSNYKDSSVPKHRKVQASGTEHKGSSGEAANPFPVPSLPNGTCKPGKPQVKSDRQQADFHMKEAKKLKNKAEAMVDKAGKAFKYLEAILSFIECGMAMESESSAKSAFAVYSETIDLIKFTMSLKSFSDTTAPIQEKIFAVLCLRCQSLLNMAMFRCKRDIVMKYSRTLSDHFKSSSKVAQAPSPCMARSTGVPSPLSPMPSPASSVGSQSSAGSLGSSGVTATVSTPVTIHNMTSSYVTITSHVLKAFDLWEQAEALTKKNKEFFAQLSTKVRVLALNSSLVDLVHYTRQGLQRLKQAPKTP", "length": 1235, "header": "tr|A0A9J7EVS3-1|A0A9J7EVS3_CRIGR Isoform 1 of AF4/FMR2 family member 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Aff1 PE=3 SV=1 CANONICAL=A0A9J7EVS3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA7/entry", "sequence": { "sequence": "MAAHSSLYNEDRNLLRIREKERRNQEAHAEKEVFAEKAPLFAEPYKTAKGDELSSRIQNMLGDYEEMKEFLSTKSCSKRLEGSEDRPGKPKYPLFHDRGSSIPSSSFRTHVYHQPIHTSSVPGPLSVGNISHSPKMAPPRMEPVPSLHAKNYGPPDSQRLTQDRLSQEGHCSNHTKCDRRADGDSAPEMKLSPLISSLPSPVPPLSPVHSRLQGSSKVPGGSTSNKSYNVATSSKDLVGKVQDNETPHDSLVAATSLGVAPSQPPSQTFPPPPLPSKSVAMQQKPTAYVRPMDGQDQAPSESPELKPPLEDYGQQSFEKPDVKVPAKAKLTRLRMPSQEVEQAFSSEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSRFPFPTKDPLHISSATQSQKQYDAPSKTHHSSQQGTSMLEDDLQLSDSEDSDTEQATEKPPSPSAPTSAPLTLPQPAVSAHSSSAESESSASDSSSDSESESSSSDSEENEPREAPAPEPEPPSTNKWQLDNWLTKVNQPSVPLDGRGSTESPRWRQENKDGDCGTDQQHPMSKDPLPKISNRAPRGPTEGSQPGKRNCQKSPAQQEPAPRQTIGTKQPRKPAKGSGQAEPQASSQAESEPGSLPYGSKEQTPKDKPKVKTKGRPRAVGNREPKPEAPVPKPQAAVPTPTEKKKHKSSPAPSKTLSDPQPPKDNAGDRNPEHFTLVSLTQSQGPPHSGRGGGSSSSNSSIRTSGCRQAVIIQEDGRKDRLLLPLRDTKLLSPLRDTPPPTSLVVKITLDLLTRIPQPSGKGGRSRKTEDKQLPSAKKQDTEKRSCDPSSKATKKRKQSDADKDHDNKKIRLEKDIQSHCTASSFSHSESSKTKTPRTSSESSKKEMLPPPPVLSSSSSSSSSQKSIKTSHKRSKPDADSCSQDPPKRASSTKSNYKDSSVPKHRKVQASGTEHKGSSGEAANPFPVPSLPNGTCKPGKPQVKSDRQQADFHMKEAKKLKNKAEAMVDKAGKAFKYLEAILSFIECGMAMESESSAKSAFAVYSETIDLIKFTMSLKSFSDTTAPIQEKIFAVLCLRCQSLLNMAMFRCKRDIVMKYSRTLSDHFKSSSKVAQAPSPCMARSTGVPSPLSPMPSPASSVGSQSSAGSLGSSGVTATVSTPVTIHNMTSSYVTITSHVLKAFDLWEQAEALTKKNKEFFAQLSTKVRVLALNSSLVDLVHYTRQGLQRLKQAPKTP", "length": 1222, "header": "tr|A0A8C2MCA7-1|A0A9J7EVS3_CRIGR Computationally mapped isoform of AF4/FMR2 family member 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Aff1 PE=3 SV=1 CANONICAL=A0A9J7EVS3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EVS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3/entry", "sequence": { "sequence": "MAFKNSSSSSNSSDSASSSLYNEDRNLLRIREKERRNQEAHAEKEVFAEKAPLFAEPYKTAKGDELSSRIQNMLGDYEEMKEFLSTKSCSKRLEGSEDRPGKPKYPLFHDRGSSIPSSSFRTHVYHQPIHTSSVPGPLSVGNISHSPKMAPPRMEPVPSLHAKNYGPPDSQRLTQDRLSQEGHCSNHTKCDRRADGDSAPEMKLSPLISSLPSPVPPLSPVHSRLQGSSKVPGGSTSNKSYNVATSSKDLVGKVQDNETPHDSLVAATSLGVAPSQPPSQTFPPPPLPSKSVAMQQKPTAYVRPMDGQDQAPSESPELKPPLEDYGQQSFEKPDVKVPAKAKLTRLRMPSQEVEQAFSSEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSRFPFPTKDPLHISSATQSQKQYDAPSKTHHSSQQGTSMLEDDLQLSDSEDSDTEQATEKPPSPSAPTSAPLTLPQPAVSAHSSSAESESSASDSSSDSESESSSSDSEENEPREAPAPEPEPPSTNKWQLDNWLTKVNQPSVPLDGRGSTESPRWRQENKDGDCGTDQQHPMSKDPLPKISNRAPRGPTEGSQPGKRNCQKSPAQQEPAPRQTIGTKQPRKPAKGSGQAEPQASSQAESEPGSLPYGSKEQTPKDKPKVKTKGRPRAVGNREPKPEAPVPKPQAAVPTPTEKKKHKSSPAPSKTLSDPQPPKDNAGDRNPEHFTLVSLTQSQGPPHSGRGGGSSSSNSSIRTSGCRQAVIIQEDGRKDRLLLPLRDTKLLSPLRDTPPPTSLVVKITLDLLTRIPQPSGKGGRSRKTEDKQLPSAKKQDTEKRSCDPSSKATKKRKQSDADKDHDNKKIRLEKDIQSHCTASSFSHSESSKTKTPRTSSESSKKEMLPPPPVLSSSSSSSSSQKSIKTSHKRSKPDADSCSQDPPKRASSTKSNYKDSSVPKHRKVQASGTEHKGSSGEAANPFPVPSLPNGTCKPGKPQVKSDRQQADFHMKEAKKLKNKAEAMVDKAGKAFKYLEAILSFIECGMAMESESSAKSAFAVYSETIDLIKFTMSLKSFSDTTAPIQEKIFAVLCLRCQSLLNMAMFRCKRDIVMKYSRTLSDHFKSSSKVAQAPSPCMARSTGVPSPLSPMPSPASSVGSQSSAGSLGSSGVTATVSTPVTIHNMTSSYVTITSHVLKAFDLWEQAEALTKKNKEFFAQLSTKVRVLALNSSLVDLVHYTRQGLQRLKQAPKTP", "length": 1235, "header": "tr|A0A9J7EVS3-1|A0A9J7EVS3_CRIGR Isoform 1 of AF4/FMR2 family member 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Aff1 PE=3 SV=1 CANONICAL=A0A9J7EVS3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0V5/entry", "sequence": { "sequence": 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"length": 1234, "header": "tr|A0A9J7F0V5-1|A0A9J7F0V5_CRIGR Computationally mapped isoform of AF4/FMR2 family member 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Aff1 PE=3 SV=1 CANONICAL=A0A9J7EVS3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEK5/entry", "sequence": { "sequence": "MLGDYEEMKEFLSTKSCSKRLEGSEDRPGKPKYPLFHDRGSSIPSSSFRTHVYHQPIHTSSVPGPLSVGNISHSPKMAPPRMEPVPSLHAKNYGPPDSQRLTQDRLSQEGHCSNHTKCDRRADGDSAPEMKLSPLISSLPSPVPPLSPVHSRLQGSSKVPGGSTSNKSYNVATSSKDLVGKVQDNETPHDSLVAATSLGVAPSQPPSQTFPPPPLPSKSVAMQQKPTAYVRPMDGQDQAPSESPELKPPLEDYGQQSFEKPDVKVPAKAKLTRLRMPSQEVEQAFSSEVHCVEEILKEMTHSWPPPLTAIHTPSTAEPSRFPFPTKDPLHISSATQSQKQYDAPSKTHHSSQQGTSMLEDDLQLSDSEDSDTEQATEKPPSPSAPTSAPLTLPQPAVSAHSSSAESESSASDSSSDSESESSSSDSEENEPREAPAPEPEPPSTNKWQLDNWLTKVNQPSVPLDGRGSTESPRWRQENKDGDCGTDQQHPMSKDPLPKISNRAPRGPTEGSQPGKRNCQKSPAQQEPAPRQTIGTKQPRKPAKGSGQAEPQASSQAESEPGSLPYGSKEQTPKDKPKVKTKGRPRAVGNREPKPEAPVPKPQAAVPTPTEKKKHKSSPAPSKTLSDPQPPKDNAGDRNPEHFTLVSLTQSQGPPHSGRGGGSSSSNSSIRTSGCRQAVIIQEDGRKDRLLLPLRDTKLLSPLRDTPPPTSLVVKITLDLLTRIPQPSGKGGRSRKTEDKQLPSAKKQDTEKRSCDPSSKATKKRKQSDADKDHDNKKIRLEKDIQSHCTASSFSHSESSKTKTPRTSSESSKKEMLPPPPVLSSSSSSSSSQKSIKTSHKRSKPDADSCSQDPPKRASSTKSNYKDSSVPKHRKVQASGTEHKGSSGEAANPFPVPSLPNGTCKPGKPQVKSDRQQADFHMKEAKKLKNKAEAMVDKAGKAFKYLEAILSFIECGMAMESESSAKSAFAVYSETIDLIKFTMSLKSFSDTTAPIQEKIFAVLCLRCQSLLNMAMFRCKRDIVMKYSRTLSDHFKSSSKVAQAPSPCMARSTGVPSPLSPMPSPASSVGSQSSAGSLGSSGVTATVSTPVTIHNMTSSYVTITSHVLKAFDLWEQAEALTKKNKEFFAQLSTKVRVLALNSSLVDLVHYTRQGLQRLKQAPKTP", "length": 1163, "header": "tr|A0A9J7HEK5-1|A0A9J7HEK5_CRIGR Computationally mapped isoform of AF4/FMR2 family member 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Aff1 PE=3 SV=1 CANONICAL=A0A9J7EVS3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 580, "start_aa": "Thr", "end_pos": 580, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr580", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 679, "start_aa": "Thr", "end_pos": 679, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr679", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCA7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MCA7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751914", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751914", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "super elongation complex", "id": "GO:0032783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVS3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1165, "end_pos": 1167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1211, "end_pos": 1213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 738, "end_pos": 740, "annotation": "n_glycosylation_sequon" }, { "start_pos": 972, "end_pos": 974, "annotation": 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QJX7-1", "uniprot_ac": "A0A8C2QJX7", "uniprot_id": "A0A8C2QJX7_CRIGR", "mass": { "chemical_mass": 49219.0, "monoisotopic_mass": 49219.0 }, "refseq": { "ac": "XP_027247107", "name": "carboxypeptidase A5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247107" }, "gene_names": [ { "name": "Cpa5", "type": "recommended", "evidence": [ { "id": "A0A8C2QJX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7" } ] }, { "name": "Cpa5", "type": "synonym", "evidence": [ { "id": "XP_027247107", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247107" } ] } ], "protein_names": [ { "name": "Carboxypeptidase A5 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QJX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7/entry#names_and_taxonomy" } ] }, { "name": "carboxypeptidase A5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027247107", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247107" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247107", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247107" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJX7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cpa5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7", "locus": {} } ], "crossref": [ { "id": "cd03870", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03870", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757381", "url": "https://www.ncbi.nlm.nih.gov/gene/100757381", "database": "GeneID", "categories": [ "Genome 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"database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11705", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11705", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11705:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11705:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02244", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02244", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247107", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247107", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MKX3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MKX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJX7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGPLGGGTGPGLSPVDRRTLLICIFILAIVWGQMNFTGDQVLRILAKDEKQLTLLRDLEGLKPQKVDFWRGPARPSLPVDMRVPFSELKDVKDYLKSHGLRYSVMIKDIQVLLDEERDAMAKSRRLERSSSSFSYSSYHTLDEIYNWMDNFVAEHSNLVSKIHIGNSFENRSILVLKFSTGGSNRQAVWIDTGIHSREWITHATGIWISNKIASSYAKDHLLKKILNAMDIFIDIITNPDGFAFTHSMNRLWRKNKSSQPGISCIGVDLNRNWRTGFGGNGSNKNPCSETYRGPAPESEPEVAAIVEFITNHGNFKALISIHSYSQMVMYPYGHSLEPVPNYYELFNLAKDAVKALNKVHGIQYTFGSISTTLYAASGITVDWAYDTGIKYAFSFELRDTGQYGFLLPASQIVPTAEETWMAIRTIMKHTMNHPY", "length": 436, "header": "tr|A0A8C2QJX7-1|A0A8C2QJX7_CRIGR Isoform 1 of Carboxypeptidase A5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cpa5 PE=3 SV=1 CANONICAL=A0A8C2QJX7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MKX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKX3/entry", "sequence": { "sequence": "MQGPLGGGTGPGLSPVDRRTLLICIFILAIVWGQMNFTGDQVLRILAKDEKQLTLLRDLEGLKPQKVDFWRGPARPSLPVDMRVPFSELKDVKDYLKSHGLRYSVMIKDIQVLLDEERDAMAKSRRLERSSSSFSYSSYHTLDEIYNWMDNFVAEHSNLVSKIHIGNSFENRSILVLKFSTGGSNRQAVWIDTGIHSREWITHATGIWISNKIASSYAKDHLLKKILNAMDIFIDIITNPDGFAFTHSMNRLWRKNKSSQPGISCIGVDLNRNWRTGFGGNGSNKNPCSETYRGPAPESEPEVAAIVEFITNHGNFKALISIHSYSQMVMYPYGHSLEPVPNYYELMQPAGSRWIGLMTLASSMPSASSSGTLDNTASCCQLRRSFPQPRRHGWLFGPS", "length": 399, "header": "tr|A0A8C2MKX3-1|A0A8C2QJX7_CRIGR Computationally mapped isoform of Carboxypeptidase A5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cpa5 PE=3 SV=1 CANONICAL=A0A8C2QJX7-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QJX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7/entry", "sequence": { "sequence": "MQGPLGGGTGPGLSPVDRRTLLICIFILAIVWGQMNFTGDQVLRILAKDEKQLTLLRDLEGLKPQKVDFWRGPARPSLPVDMRVPFSELKDVKDYLKSHGLRYSVMIKDIQVLLDEERDAMAKSRRLERSSSSFSYSSYHTLDEIYNWMDNFVAEHSNLVSKIHIGNSFENRSILVLKFSTGGSNRQAVWIDTGIHSREWITHATGIWISNKIASSYAKDHLLKKILNAMDIFIDIITNPDGFAFTHSMNRLWRKNKSSQPGISCIGVDLNRNWRTGFGGNGSNKNPCSETYRGPAPESEPEVAAIVEFITNHGNFKALISIHSYSQMVMYPYGHSLEPVPNYYELFNLAKDAVKALNKVHGIQYTFGSISTTLYAASGITVDWAYDTGIKYAFSFELRDTGQYGFLLPASQIVPTAEETWMAIRTIMKHTMNHPY", "length": 436, "header": "tr|A0A8C2QJX7-1|A0A8C2QJX7_CRIGR Isoform 1 of Carboxypeptidase A5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cpa5 PE=3 SV=1 CANONICAL=A0A8C2QJX7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKX3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKX3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MKX3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MKX3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757381", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757381", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJX7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJX7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJX7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7" } ], "pmid": "" }, { "name": "metallocarboxypeptidase activity", "id": "GO:0004181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004181", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJX7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" }, { "start_pos": 36, 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"end_pos": 173 }, { "start_pos": 256, "end_pos": 258 }, { "start_pos": 281, "end_pos": 283 }, { "start_pos": 36, "end_pos": 38 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QLC6-1", "uniprot_ac": "A0A8C2QLC6", "uniprot_id": "A0A8C2QLC6_CRIGR", "mass": { "chemical_mass": 64602.0, "monoisotopic_mass": 64602.0 }, "refseq": { "ac": "XP_027260130", "name": "CDK5 and ABL1 enzyme substrate 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260130" }, "gene_names": [ { "name": "Cables1", "type": "recommended", "evidence": [ { "id": "A0A8C2QLC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLC6" } ] }, { "name": "Cables1", "type": "synonym", "evidence": [ { "id": "XP_027260130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260130" } ] } ], "protein_names": [ { "name": "CDK5 and ABL1 enzyme substrate 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027260130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260130" }, { "id": "A0A8C2QLC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLC6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260130", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260130" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLC6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cables1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLC6", "locus": {} } ], "crossref": [ { "id": "cd20602", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20602", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752271", "url": "https://www.ncbi.nlm.nih.gov/gene/100752271", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752271", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752271", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QLC6", "url": "https://www.orthodb.org/?gene=A0A8C2QLC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22896", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22896", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22896:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22896:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260130", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260130", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MM03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MM03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QLC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QLC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAATATAGTAACSSSSSSSSSSRRGGTDPAATSGVQPPPPPPATAQTEPLRKPRVDPRRRQAALSFLTNISLDGRPPLQDDEWGGGEEGGATKPGARARLSLLAANCNAFSAPGTAAAPWTAASGSSPCPLPPSLVSRASGESLPPRSAPAVTSAQLQLPDGPGGAGQEDLEEDDAFTNVQVPLASFLGSGTPGSASGSRGRLNSFTQGILPIAFSRQNSQNYCALEQSGQGGSTSALEQLQRSRRRLISQRSSLETLEDIEENAPLRRCRTLSGSPRPKNFKKIHFIKNMRQHDTRNGRIVLISGRRSFCSIFSVLPYRDSTQVGDLKLDGGKQSAGAMSLKEIIGLDGVELGADGKTVSYTQFLLPTNAFGTRRNTIDSTSSFSQFRTLSHRSLSIGRASSTQGSLDAGSDLGDFMDYDPNLLDDPQWPCGKHKRVLTFPSYMTTVIDYVKPSDLKKDMNETFKEKFPHIKLTLSKIRSLKREMRKLAQEDCGFEEPTVAMAFVYFEKLALKGKLNKQNRKLCAGACVLLAAKVGSDLKKHDVKHLIDKLEEKFRLNRRELIAFEFPVLVALEFALHLPEHEVMPHYRRLIQSS", "length": 597, "header": "tr|A0A8C2QLC6-1|A0A8C2QLC6_CRIGR Isoform 1 of CDK5 and ABL1 enzyme substrate 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cables1 PE=3 SV=1 CANONICAL=A0A8C2QLC6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MM03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MM03/entry", "sequence": { "sequence": "MAAATATAGTAACSSSSSSSSSSRRGGTDPAATSGVQPPPPPPATAQTEPLRKPRVDPRRRQAALSFLTNISLDGRPPLQDDEWGGGEEGGATKPGARARLSLLAANCNAFSAPGTAAAPWTAASGSSPCPLPPSLVSRASGESLPPRSAPAVTSAQLQLPDGPGGAGQEDLEEDDAFTNVQVPLASFLGSGTPGSASGSRGRLNSFTQGILPIAFSRQNSQNYCALEQSGQGGSTSALEQLQRSRRRLISQRSSLETLEDIEENAPLRRCRTLSGSPRPKNFKKIHFIKNMRQHDTRNGRDLKLDGGKQSAGAMSLKEIIGLDGVELGADGKTVSYTQFLLPTNAFGTRRNTIDSTSSFSQFRTLSHRSLSIGRASSTQGSLDAGSDLGDFMDYDPNLLDDPQWPCGKHKRVLTFPSYMTTVIDYVKPSDLKKDMNETFKEKFPHIKLTLSKIRSLKREMRKLAQEDCGFEEPTVAMAFVYFEKLALKGKLNKQNRKLCAGACVLLAAKVGSDLKKHDVKHLIDKLEEKFRLNRRELIAFEFPVLVALEFALHLPEHEVMPHYRRLIQSS", "length": 571, "header": "tr|A0A8C2MM03-1|A0A8C2QLC6_CRIGR Computationally mapped isoform of CDK5 and ABL1 enzyme substrate 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cables1 PE=3 SV=1 CANONICAL=A0A8C2QLC6-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QLC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLC6/entry", "sequence": { "sequence": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F1V5-1", "uniprot_ac": "A0A9J7F1V5", "uniprot_id": "A0A9J7F1V5_CRIGR", "mass": { "chemical_mass": 102523.0, "monoisotopic_mass": 102523.0 }, "refseq": { "ac": "XP_003504406", "name": "TRPM8 channel-associated factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504406" }, "gene_names": [ { "name": "LOC100753518", "type": "recommended", "evidence": [ { "id": "A0A9J7F1V5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5" } ] }, { "name": "LOC100753518", "type": "synonym", "evidence": [ { "id": "XP_003504406", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504406" } ] } ], "protein_names": [ { "name": "TRPM8 channel-associated factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003504406", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504406" }, { "id": "A0A9J7F1V5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614056.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003504406.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504406", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504406" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753518", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5", "locus": {} } ], "crossref": [ { "id": "A0A9J7F1V5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F1V5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753518", "url": "https://www.ncbi.nlm.nih.gov/gene/100753518", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753518", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753518", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YMAIPAE", "url": "https://omabrowser.org/oma/group/YMAIPAE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MQY2", "url": "https://www.orthodb.org/?gene=A0A8C2MQY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F1V5", "url": "https://www.orthodb.org/?gene=A0A9J7F1V5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27027", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27027", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504406", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504406", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MQY2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MQY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQY2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPSAAFEALMTGVTSWDIPEDAIPCELLLIGESSFPVMVNDMGQVLIAASSYGRGRMVVVAHEDYLVESQLFVFLVNAIGWLRSSPESSIGIHTSLSPLVKILESCGIESTIEPEANDSIGVYCIDAYHESMSDKLVQFVKRGGGLLIGGQAWDWANQGEDERILFTFPGNLVTSVAGVYFTDNKADSTVFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDITNSDCFPSQLLVHGALAFPLGLDTYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPQLTSDASVYCFEPTSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKLGIRTYHFRSTLAEFEVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMHSSLYLRPSESPITVDVNCTNRGTRYCWMSTALYIPGRQIIEVSLPEDAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPVKSITCLWGGLLYIIVPQNSKLGSVPITVKGAVRAPYYKLGETSQEEWKRRLQEHPGPWGELATDNLILTVPTANLRALENPEPLLRLWDDVMQAVARLGGEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPNIKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDTADKMNLWAKMFSQQVQKNLAPFFEAWAWPIQKELATSLAYLPEWKENIMKLYLLTQMPQ", "length": 921, "header": "tr|A0A9J7F1V5-1|A0A9J7F1V5_CRIGR Isoform 1 of TRPM8 channel-associated factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100753518 PE=3 SV=1 CANONICAL=A0A9J7F1V5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MQY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQY2/entry", "sequence": { "sequence": "MATPSAAFEALMTGVTSWDIPEDAIPCELLLIGESSFPVMVNDMGQVLIAASSYGRGRMVVVAHEDYLVESQLFVFLVNAIGWLRSSPESSIGIHTSLSPLVKILESCGIESTIEPEANDSIGVYCIDAYHESMSDKLVQFVKRGGGLLIGGQAWDWANQGEDERILFTFPGNLVTSVAGVYFTDNKADSTVFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDITNSDCFPSQLLVHGALAFPLGLDTYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPQLTSDASVYCFEPTSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKLGIRTYHFRSTLAEFEVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMHSSLYLRPSESPITVDVNCTNRGTRYCWMSTALYIPGRQIIEVSLPEDAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPVKSITCLWGGLLYIIVPQNSKLGSVPITVKGAVRAPYYKLGETSQEEWKRRLQEHPGPWGELATDNLILTVPTANLRALENPEPLLRLWDDVMQAVARLGGEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPNIKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDTADKMNLWAKMFSQQVQKNLAPFFEAWAWPIQKELATSLAYLPEWKENIMKLYLLTQM", "length": 919, "header": "tr|A0A8C2MQY2-1|A0A9J7F1V5_CRIGR Computationally mapped isoform of TRPM8 channel-associated factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100753518 PE=3 SV=1 CANONICAL=A0A9J7F1V5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5/entry", "sequence": { "sequence": "MATPSAAFEALMTGVTSWDIPEDAIPCELLLIGESSFPVMVNDMGQVLIAASSYGRGRMVVVAHEDYLVESQLFVFLVNAIGWLRSSPESSIGIHTSLSPLVKILESCGIESTIEPEANDSIGVYCIDAYHESMSDKLVQFVKRGGGLLIGGQAWDWANQGEDERILFTFPGNLVTSVAGVYFTDNKADSTVFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDITNSDCFPSQLLVHGALAFPLGLDTYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPQLTSDASVYCFEPTSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKLGIRTYHFRSTLAEFEVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMHSSLYLRPSESPITVDVNCTNRGTRYCWMSTALYIPGRQIIEVSLPEDAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPVKSITCLWGGLLYIIVPQNSKLGSVPITVKGAVRAPYYKLGETSQEEWKRRLQEHPGPWGELATDNLILTVPTANLRALENPEPLLRLWDDVMQAVARLGGEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPNIKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDTADKMNLWAKMFSQQVQKNLAPFFEAWAWPIQKELATSLAYLPEWKENIMKLYLLTQMPQ", "length": 921, "header": "tr|A0A9J7F1V5-1|A0A9J7F1V5_CRIGR Isoform 1 of TRPM8 channel-associated factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100753518 PE=3 SV=1 CANONICAL=A0A9J7F1V5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3, "start_aa": "Thr", "end_pos": 3, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQY2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQY2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MQY2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQY2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753518", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753518", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A4IG42-1", "protein_name": "TRPM8 channel-associated factor homolog", "gene_name": "tcaf", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAREQDYYTLMSGMQQLDLQGKAVPSDLVLIGEHAFPLAMNPRGQVLMAASHYGRGRIVVLGHEEYLTRFPGLIENAIMWLMPCTGDAGVVGIQKSLRTVAENLNYSPFKTELGDFQDRFAIYITDAYSVESSAKDLIAFLKAGGGLIIAGQAWSWSYEHPQENTIRNFPGNKVCSVAGIYFSELEGEVGTFPVPRNIPSSWLAVAIGKDFKEDLEFLLEGVSEFDTQGGAIASEVMVHGPLAFPIAVTPNGKTFIAGAYYGQGRVIVVSHEGYMGRDSLSSFMINAIKWLDEGRKGVVGIVPNLTAAHTVLSKSGLDCQLTGFREDLSVYVCTSYSDAQCAEIQEFVAEGGGLLIGGHAWYWAQTHCGSNVMTEYPGNHILNKMGLCLLGNTLGGGLYKAPEIEHSCKHGYHFRSMLQRFAQHVSQGQELTDREQGCLKQLGTDCASYLQMRCHDSAAYTSVVALLSDIVKEVGVPQVCSNCPVESPKDHLMLHIGTEVYKVTPDPDALLPYIIKDRPNLPTLSNARVRITANTGGCEEWISTGLYLSPGMKTYIAVPPEIVGKNWQVQLGCQTDNIGGSNTLKRAPVVHARFPLDSEMVQVWNLWGGLIYLIAPSQTKVDGVEIVVQNAVQAPYFKSGETSVADWVSHIRQAPAPWAELEFENLIMTFDSAFIRNLDRPDEVAKLWDTIMRTITDLAARPPKLPRKERFVADVQISYGFMHAGYPIMMHSGSAPGLVNVEEAYKCGLWGAIHELGHNQQRGVWEFPPHTTECTCNLWSLYVHEQVFGIKSANAHPAITPADRQARTKMYFDGGKDLNSWCMWMALETYMQLQEKFGWDAFKKVFSLYHDMTGVPNDNAGKMNLYAQTFSKVVNLNLSPFFKAWGWPIQPNTEQNLSHLPAWSDHPVSQYA", "length": 912 }, "evidence": [ { "id": "A0A9J7F1V5", "url": "https://omabrowser.org/oma/group/A0A9J7F1V5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3Z8A4-1", "protein_name": "TRPM8 channel-associated factor 1", "gene_name": "Tcaf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSLLSPPPATQRSSFTCQAPPLGLLLWPGGSGEETAWEPLLSSRSDLLPVKLQAFGGCSGAPWCSTEKPLFSPPGAVLEAPRQLPGTNRTMATPSATFEALMNGVTSWDIPDDSVPCELLLIGEASFPIMVNDVGQVLIAASSYGRGRMVVASHEDFLVESQLFVFLVNAVGWLRSSSESTIGVHSSLAPLVKILESCGIESKIEPEVNDSLGVYCIDAYNETMTDKLLQFVKRGGGLLIGGQAWDWDNLGEDDRVLFSFPGNLVTSVAGVYFTDNKADTNCYKVSKKMPKIPILVRCEDDLSEDRDELLHGISDLDITNSDCFPSQLLVHGSLAFPLGLDTHHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPQLTSDASVYCFEPTSDVGVKELQEFVAEGGGLFVGTQAWWWAFKNPGVSPLARFPGNLLLNAFGISITSQSLNPGPFHIPKAGTRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLIPEIEDVYSSCYLRPSESPITVDVNCTNPGTRYCWMSTGLYIPGRQVIDVSLPEDAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPMKSINCLWGGLLYIIVPQNSKLGTVPLTVKGAVRAPFYKLGETSKEEWKRRLLEYPGPWGELATDNLILTVPTANLRTLENPEPLLRLWDEVMQAVAKLGGEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELISEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRMYLSKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTTNSPTDNVNKMNLWVKMFSQQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLYLLTQL", "length": 1011 }, "evidence": [ { "id": "A0A9J7F1V5", "url": "https://omabrowser.org/oma/group/A0A9J7F1V5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N7N3-1", "protein_name": "TRPM8 channel associated factor 1", "gene_name": "TCAF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"https://omabrowser.org/oma/group/A0A9J7F1V5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BNE1-1", "protein_name": "TRPM8 channel-associated factor 1", "gene_name": "Tcaf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATPSAAFEALMNGVTSWDIPEDSVPCELLLIGEASFPIMVNDVGQVLVAASSYGRGRMVVASHEDFLLESQLFVFLVNAVGWLRSSPNSAIGVHSSLAPLVKILESCGIESKIEPEVNDSLGVYCIDAYNETMTDKLVQFVKRGGGLLIGGEAWDWDTQGDDDRVLFAFPGNLVTSVAGVYFTDNKADTSFFKVSKKMPKIPILVRCDDDLSDDRDELLRGIIDLDITNSDCFPSQLLVHGSLAFPLGLDTYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRKGKIVVQTELRTLSGLLAVGGIDTSIEPHLTSDASVYCFEPTSDVGVKELQEFVAEGGGLFVGTQAWWWAFKNPGVSPLARFPGNLLLNAFGISITSQSLNPGPFRTPKIGTRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGATFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLIPEIEDVYSSRYLRPSASPITVNVNCTNPGTRYCWMSTGLYIPGRQVIDVSVPESAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQNSKLGSVPLTVKGAVRAPFYKLGETSKEEWKRRLLEYPGPWGELATDNIILTVPTANLRTLENPEPLLRLWDEMMQAVAKLGGETFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPSVKHWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTTSSSPPSDNVDKMNLWVKMFSQQVQRNLAPFFEAWGWPIQKEVATSLAYLPEWKENIMKLYLLTQMPH", "length": 924 }, "evidence": [ { "id": "A0A9J7F1V5", "url": "https://omabrowser.org/oma/group/A0A9J7F1V5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y4C2-1", "protein_name": "TRPM8 channel-associated factor 1", "gene_name": "TCAF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPSAAFEALMNGVTSWDVPEDAVPCELLLIGEASFPVMVNDMGQVLIAASSYGRGRLVVVSHEDYLVEAQLTPFLLNAVGWLCSSPGAPIGVHPSLAPLAKILEGSGVDAKVEPEVKDSLGVYCIDAYNETMTEKLVKFMKCGGGLLIGGQAWDWANQGEDERVLFTFPGNLVTSVAGIYFTDNKGDTSFFKVSKKMPKIPVLVSCEDDLSDDREELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKVVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSEVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCTNPGTRYCWMSTGLYIPGRQIIEVSLPEAAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQNSKLGSVPVTVKGAVHAPYYKLGETTLEEWKRRIQENPGPWGELATDNIILTVPTANLRTLENPEPLLRLWDEVMQAVARLGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTENVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLYLLTQMPH", "length": 921 }, "evidence": [ { "id": "A0A9J7F1V5", "url": "https://omabrowser.org/oma/group/A0A9J7F1V5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of cell migration", "id": "GO:0030336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030336", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5" } ], "pmid": "" }, { "name": "positive regulation of protein targeting to membrane", "id": "GO:0090314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090314", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 854, "end_pos": 856, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F1V5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1V5" }, { "id": "PS51723", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51723" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M60", "eco_id": "ECO_0000259", "start_pos": 542, "end_pos": 841, "start_aa": "Tyr", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 3 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 534, "end_pos": 536 }, { "start_pos": 854, "end_pos": 856 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EVD1-1", "uniprot_ac": "A0A9J7EVD1", "uniprot_id": "A0A9J7EVD1_CRIGR", "mass": { "chemical_mass": 33956.0, "monoisotopic_mass": 33956.0 }, "refseq": { "ac": "XP_027242345", "name": "MAPK-interacting and spindle-stabilizing protein-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242345" }, "gene_names": [ { "name": "Mapk1ip1l", "type": "recommended", "evidence": [ { "id": "A0A9J7EVD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1" } ] }, { "name": "Mapk1ip1l", "type": "synonym", "evidence": [ { "id": "XP_027242345", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242345" } ] } ], "protein_names": [ { "name": "MAPK-interacting and spindle-stabilizing protein-like", "type": "recommended", "evidence": [ { "id": "A0A9J7EVD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1/entry#names_and_taxonomy" } ] }, { "name": "MAPK-interacting and spindle-stabilizing protein-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027242345", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242345" } ] }, { "name": "Mitogen-activated protein kinase 1-interacting protein 1-like", "type": "synonym", "evidence": [ { "id": "A0A9J7EVD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242345", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242345" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mapk1ip1l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1", "locus": {} } ], "crossref": [ { "id": "A0A9J7EVD1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EVD1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774859", "url": "https://www.ncbi.nlm.nih.gov/gene/100774859", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774859", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774859", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPWTAPP", "url": "https://omabrowser.org/oma/group/GPWTAPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MV52", "url": "https://www.orthodb.org/?gene=A0A8C2MV52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EVD1", "url": "https://www.orthodb.org/?gene=A0A9J7EVD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35973", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35973", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35973:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35973:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027242345", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242345", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MV52", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MV52-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDEFSLADALPEPSSAKPSAVSNAKAGQTTQGWPGSNPWSNPSAPPAMPSGLPPSGAAPITVPFGPAPTGMYPSMPPTGPPPGPPAPFPPSGPSCPPPSGPYPAPTVPVPGPTGPYATPNMPLPELPRPYGAPTDPAGTLGPWGSMSSGPWAPGIGGQHPNMPYRSPGPYPTAPPPVSGAPPVPWGTVPPGPWGPPAPYPGPAGSYPTPGPHPTPNNPYQVPSGPSGAPPMPGGPHTMNEVPGGSHSDESEQESTPESTGQMKLLKVDNKPIRKPRPKRKSKPITWGDIKNLTHQAETLGKQQGHSTTDPKMMLLNLMTILHVNSQHYPK", "length": 331, "header": "tr|A0A9J7EVD1-1|A0A9J7EVD1_CRIGR Isoform 1 of MAPK-interacting and spindle-stabilizing protein-like OS=Cricetulus griseus OX=10029 GN=Mapk1ip1l PE=3 SV=1 CANONICAL=A0A9J7EVD1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MV52-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV52/entry", "sequence": { "sequence": "MSDEFSLADALPEPSSAKPSAVSNAKAGQTTQGWPGSNPWSNPSAPPAMPSGLPPSGAAPITVPFGPAPTGMYPSMPPTGPPPGPPAPFPPSGPSCPPPSGPYPAPTVPVPGPTGPYATPNMPLPELPRPYGAPTDPAGTLGPWGSMSSGPWAPGIGGQHPNMPYRSPGPYPTAPPPVSGAPPVPWGTVPPGPWGPPAPYPGPAGSYPTPGPHPTPNNPYQVPSGPSGAPPMPGGPHYH", "length": 239, "header": "tr|A0A8C2MV52-1|A0A9J7EVD1_CRIGR Computationally mapped isoform of MAPK-interacting and spindle-stabilizing protein-like OS=Cricetulus griseus OX=10029 GN=Mapk1ip1l PE=3 SV=1 CANONICAL=A0A9J7EVD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EVD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVD1/entry", "sequence": { "sequence": "MSDEFSLADALPEPSSAKPSAVSNAKAGQTTQGWPGSNPWSNPSAPPAMPSGLPPSGAAPITVPFGPAPTGMYPSMPPTGPPPGPPAPFPPSGPSCPPPSGPYPAPTVPVPGPTGPYATPNMPLPELPRPYGAPTDPAGTLGPWGSMSSGPWAPGIGGQHPNMPYRSPGPYPTAPPPVSGAPPVPWGTVPPGPWGPPAPYPGPAGSYPTPGPHPTPNNPYQVPSGPSGAPPMPGGPHTMNEVPGGSHSDESEQESTPESTGQMKLLKVDNKPIRKPRPKRKSKPITWGDIKNLTHQAETLGKQQGHSTTDPKMMLLNLMTILHVNSQHYPK", "length": 331, "header": "tr|A0A9J7EVD1-1|A0A9J7EVD1_CRIGR Isoform 1 of MAPK-interacting and spindle-stabilizing protein-like OS=Cricetulus griseus OX=10029 GN=Mapk1ip1l PE=3 SV=1 CANONICAL=A0A9J7EVD1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 107, "start_aa": "Thr", "end_pos": 107, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr107", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 114, "start_aa": "Thr", "end_pos": 114, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr114", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 173, "start_aa": "Thr", "end_pos": 173, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr173", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MV52", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV52" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MV52", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV52" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774859", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774859", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 107, 114, 173, 209 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 292, "end_pos": 294 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", 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"field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F1G3-1", "uniprot_ac": "A0A9J7F1G3", "uniprot_id": "A0A9J7F1G3_CRIGR", "mass": { "chemical_mass": 133401.0, "monoisotopic_mass": 133401.0 }, "refseq": { "ac": "XP_027246994", "name": "microtubule-associated tumor suppressor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246994" }, "gene_names": [ { "name": "Mtus1", "type": "recommended", "evidence": [ { "id": "A0A9J7F1G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3" } ] }, { "name": "Mtus1", "type": "synonym", "evidence": [ { "id": "XP_027246994", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246994" } ] } ], "protein_names": [ { "name": "Microtubule-associated tumor suppressor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F1G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3/entry#names_and_taxonomy" } ] }, { "name": "microtubule-associated tumor suppressor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027246994", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246994" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246994", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246994" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mtus1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3", "locus": {} } ], "crossref": [ { "id": "100771939", "url": "https://www.ncbi.nlm.nih.gov/gene/100771939", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771939", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771939", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SKDMLWS", "url": "https://omabrowser.org/oma/group/SKDMLWS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F1G3", "url": "https://www.orthodb.org/?gene=A0A9J7F1G3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24200", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24200", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24200:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24200:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27558", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27558", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246994", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246994", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N1L0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1L0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNDDNSDKTDELRYMFISDKNGNTSEYNTKPSSTQCPSTSHWDWNIASPDDMVVDYVMDPAVDTNGSVSVSHQRVEPSSDFIGKPGFAVRSDPTHQSSALSTTESPNLHSNLDSLEALQGERFEPSLPCMRKSDGDFGCADSSAALELKQTLNMKVDSINCTFKALHSSDQGQPLYAPGGLQPTGVRGGNTLSCSKWTSPHSYKKNVGGIHYNREGFENLQAPPSEALNTTYIICSDVPMQTDGEDIGIQCHYSLGNVTKEYTDGTEQGLFGEREIQAVTPVSGGMEVPNGSVLQGFYCTSEDEPNSKTHSHGSYGQQEMGQNLRETLSNCHVVECPLLAPAFDKCKTRVLDSECKVTVTEDLDIASYDNNSEIQNSAGELTLRGIPGQRISFYEMAWDGNGRAVSTNSTACTSISTQVPKTPDISLTLLPVDNTEMCNLVENSPRDGKNAPNLKGAPVNVSKPNLGKSATKTNTPMGSKVRKTEIIRYPIPNFKNIKAKVISRSVLQPKDPSLPKGTPKPQSTGVSSAPPVPSKQLTVVSKTEKSDFTADKKAELLINKTDKQPFNKLITSQPVHVTTYSKNASLRVPRTTSATKSNREDVDKTGSSHAVVETGSVAVFSQIEGILPVKMKSSECLEVTYASHIDQINPEKGEKDSCTPVEKQELRKPDMNESFECKSLSVDSAPKTATTPGRNISKPDTCSLRKAPGLKAKVGPAVSCLRRKSDSRTLGSDRALLPQRIRRVSSSAGNAAVIKYEEKAPKQAFQNGSGALYLKPLVPRAHAHLLKTPPKGPSRKSLFTAFNSVEKGRQKNPRSLCIQTQTAPDVLSSERALELAQCKTKCENQSRVILHLKQLLSSGNTKSEALTVVIQHLLSEREEALKQHKNLSQELVNLRGELVDASSTCEKLEKARNDLQTAYEGFIQKLNQQHQTDRTELENQLKEFYMVEYKKLRDIYSEEAEKYKTQLQEQLDNLNAAHETTKLEIEASHSEKVELLKKTYETSLSEIKKSHEKEKKLLENLLNEKQESLEKQVNNLKSENDALNEKLKSEEQKRISREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMTMERLVDKNTALVDKLKRFQQENEELKARMDKHMTISRQLSIEQAALQESLEKESTVNKRLSMENEELLWKLHNGDLCSLTRSPTSSAIPFQSPRNSGSFSSPSISPR", "length": 1204, "header": "tr|A0A9J7F1G3-1|A0A9J7F1G3_CRIGR Isoform 1 of Microtubule-associated tumor suppressor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mtus1 PE=3 SV=1 CANONICAL=A0A9J7F1G3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N1L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1L0/entry", "sequence": { "sequence": "MLLSPKFSLSTIHVRLTAKGLLRNLRLPSGLRKSTVIFHTVEKGRQKNPRSLCIQTQTAPDVLSSERALELAQCKTKCENQSRVILHLKQLLSSGNTKSEALTVVIQHLLSEREEALKQHKNLSQELVNLRGELVDASSTCEKLEKARNDLQTAYEGFIQKLNQQHQTDRTELENQLKEFYMVEYKKLRDIYSEEAEKYKTQLQEQLDNLNAAHETTKLEIEASHSEKVELLKKTYETSLSEIKKSHEKEKKLLENLLNEKQESLEKQVNNLKSENDALNEKLKSEEQKRISREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMTMERLVDKNTALVDKLKRFQQENEELKARMDKHMTISRQLSIEQAALQESLEKESTVNKRLSMENEELLWKLHNGDLCSLTRSPTSSAIPFQSPRNSGSFSSPSISPR", "length": 440, "header": "tr|A0A8C2N1L0-1|A0A9J7F1G3_CRIGR Computationally mapped isoform of Microtubule-associated tumor suppressor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mtus1 PE=3 SV=1 CANONICAL=A0A9J7F1G3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZ21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ21/entry", "sequence": { "sequence": "MNDDNSDKTDELRYMFISDKNGNTSEYNTKPSSTQCPSTSHWDWNIASPDDMVVDYVMDPAVDTNGSVSVSHQRVEPSSDFIGKPGFAVRSDPTHQSSALSTTESPNLHSNLDSLEALQGERFEPSLPCMRKSDGDFGCADSSAALELKQTLNMKVDSINCTFKALHSSDQGQPLYAPGGLQPTGVRGGNTLSCSKWTSPHSYKKNVGGIHYNREGFENLQAPPSEALNTTYIICSDVPMQTDGEDIGIQCHYSLGNVTKEYTDGTEQGLFGEREIQAVTPVSGGMEVPNGSVLQGFYCTSEDEPNSKTHSHGSYGQQEMGQNLRETLSNCHVVECPLLAPAFDKCKTRVLDSECKVTVTEDLDIASYDNNSEIQNSAGELTLRGIPGQRISFYEMAWDGNGRAVSTNSTACTSISTQVPKTPDISLTLLPVDNTEMCNLVENSPRDGKNAPNLKGAPVNVSKPNLGKSATKTNTPMGSKVRKTEIIRYPIPNFKNIKAKVISRSVLQPKDPSLPKGTPKPQSTGVSSAPPVPSKQLTVVSKTEKSDFTADKKAELLINKTDKQPFNKLITSQPVHVTTYSKNASLRVPRTTSATKSNREDVDKTGSSHAVVETGSVAVFSQIEGILPVKMKSSECLEVTYASHIDQINPEKGEKDSCTPVEKQELRKPDMNESFECKSLSVDSAPKTATTPGRNISKPDTCSLRKAPGLKAKVGPAVSCLRRKSDSRTLGSDRALLPQRIRRVSSSAGNAAVIKYEEKAPKQAFQNGSGALYLKPLVPRAHAHLLKTPPKVEKGRQKNPRSLCIQTQTAPDVLSSERALELAQCKTKCENQSRVILHLKQLLSSGNTKSEALTVVIQHLLSEREEALKQHKNLSQELVNLRGELVDASSTCEKLEKARNDLQTAYEGFIQKLNQQHQTDRTELENQLKEFYMVEYKKLRDIYSEEAEKYKTQLQEQLDNLNAAHETTKLEIEASHSEKVELLKKTYETSLSEIKKSHEKEKKLLENLLNEKQESLEKQVNNLKSENDALNEKLKSEEQKRISREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMTMERLVDKNTALVDKLKRFQQENEELKARMDKHMTISRQLSIEQAALQESLEKESTVNKRLSMENEELLWKLHNGDLCSLTRSPTSSAIPFQSPRNSGSFSSPSISPR", "length": 1191, "header": "tr|A0A9J7EZ21-1|A0A9J7EZ21_CRIGR Computationally mapped isoform of Microtubule-associated tumor suppressor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mtus1 PE=3 SV=1 CANONICAL=A0A9J7F1G3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3/entry", "sequence": { "sequence": "MNDDNSDKTDELRYMFISDKNGNTSEYNTKPSSTQCPSTSHWDWNIASPDDMVVDYVMDPAVDTNGSVSVSHQRVEPSSDFIGKPGFAVRSDPTHQSSALSTTESPNLHSNLDSLEALQGERFEPSLPCMRKSDGDFGCADSSAALELKQTLNMKVDSINCTFKALHSSDQGQPLYAPGGLQPTGVRGGNTLSCSKWTSPHSYKKNVGGIHYNREGFENLQAPPSEALNTTYIICSDVPMQTDGEDIGIQCHYSLGNVTKEYTDGTEQGLFGEREIQAVTPVSGGMEVPNGSVLQGFYCTSEDEPNSKTHSHGSYGQQEMGQNLRETLSNCHVVECPLLAPAFDKCKTRVLDSECKVTVTEDLDIASYDNNSEIQNSAGELTLRGIPGQRISFYEMAWDGNGRAVSTNSTACTSISTQVPKTPDISLTLLPVDNTEMCNLVENSPRDGKNAPNLKGAPVNVSKPNLGKSATKTNTPMGSKVRKTEIIRYPIPNFKNIKAKVISRSVLQPKDPSLPKGTPKPQSTGVSSAPPVPSKQLTVVSKTEKSDFTADKKAELLINKTDKQPFNKLITSQPVHVTTYSKNASLRVPRTTSATKSNREDVDKTGSSHAVVETGSVAVFSQIEGILPVKMKSSECLEVTYASHIDQINPEKGEKDSCTPVEKQELRKPDMNESFECKSLSVDSAPKTATTPGRNISKPDTCSLRKAPGLKAKVGPAVSCLRRKSDSRTLGSDRALLPQRIRRVSSSAGNAAVIKYEEKAPKQAFQNGSGALYLKPLVPRAHAHLLKTPPKGPSRKSLFTAFNSVEKGRQKNPRSLCIQTQTAPDVLSSERALELAQCKTKCENQSRVILHLKQLLSSGNTKSEALTVVIQHLLSEREEALKQHKNLSQELVNLRGELVDASSTCEKLEKARNDLQTAYEGFIQKLNQQHQTDRTELENQLKEFYMVEYKKLRDIYSEEAEKYKTQLQEQLDNLNAAHETTKLEIEASHSEKVELLKKTYETSLSEIKKSHEKEKKLLENLLNEKQESLEKQVNNLKSENDALNEKLKSEEQKRISREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMTMERLVDKNTALVDKLKRFQQENEELKARMDKHMTISRQLSIEQAALQESLEKESTVNKRLSMENEELLWKLHNGDLCSLTRSPTSSAIPFQSPRNSGSFSSPSISPR", "length": 1204, "header": "tr|A0A9J7F1G3-1|A0A9J7F1G3_CRIGR Isoform 1 of Microtubule-associated tumor suppressor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mtus1 PE=3 SV=1 CANONICAL=A0A9J7F1G3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 280, "start_aa": "Thr", "end_pos": 280, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr280", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1L0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1L0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1L0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1L0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771939", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771939", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q17QT2-1", "protein_name": "Microtubule-associated tumor suppressor 1 homolog", "gene_name": "MTUS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLSPKFSLSTIHVRLTAKGLLRNLRLPSGFRKSTVIFHTVEKGRQKSPRSLCIQTQTSPDVLSSEKALELAQYKSKCTKQSGIILQLKQLLSLGNTKFEALTVVAQHLLSEREEALKQNKTLSQELVNLRGELVTVSTTCEKLEKARNELQIAYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQNIYIEEAEKYKTQLQEQFDNLNATHETSKLKIEASHSEKIELLKKAYENSLSEIKKSHEMEKKSLEDLLYEKQESLEKQISDLKSENDTLNEKLKSEEQKRISREKANLKNPQIMYLEQELESLKAVLEIKNEKLHQQDVKLMKMEKLVDSNTALVDRLKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGNLCSPKRSPTSPAAPFQSPRNSGSFPSPSISHPDDLPGNQRQTEGISAGLTLPATAHHPP", "length": 467 }, "evidence": [ { "id": "A0A9J7F1G3", "url": "https://omabrowser.org/oma/group/A0A9J7F1G3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5HZI1-1", "protein_name": "Microtubule-associated tumor suppressor 1 homolog", "gene_name": "Mtus1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNDDNSDRTEDGSRYVFIRDKNSNPSEYYQTSLSAQCPSVSHGDWNSDNPDAMVVDYEMDPAVDSSESVSLSHQCVEELAYPEPSSDFMGKHEFTMYSELTCQSPALVNTGKPQDLHSNCDSLEAIQDEKFDPLKPCECRSDDDYACGDSPEVLELKQTYGMKVDTANYTFIARHDIEQGQPLHAPGGLQTTVRDRNALSSCGRTPPHSSKMYVRGVNYNRENFENLQATPSKTLNTTFTVISDVLMQTDSPDVGVQGQNSLGNVTKEYTDGTRRGLIGEKEIQAVTLVSDGMEVPNGSASQEFYCVSEDDPNSETHSHGPYAQQEMGQNLRGTLPNCHVDGECPVLVPAFEKSKTRVLGSECKVTVTEDPHIDSHDNDSDIQSSTEELTLRSVSGQRGSPYEMGWGENGGAICTDKAGCMSTPVEQPPNLSFRLEPAEVKKYNNVENGPRDAKRAPNLKGEPTNMPKPNLGKSATKTNTTVGSKVRKTEIISYPTPNFKNIKAKVISRSVLQPKDTSIMKDTPSPQVTGGSSPSPGPSKHLTMMNKAPRSDFKASKKAEIPINKTHKQQFNKLITSQAAQVTTHSKNASLGVPRTTSATKSNQENVDKTGSPHAGSETGSVAAFFQKIKGILPVKMKSSECLEVTYVSHIDQISPEKGEQDGEAPMEKQELGKQATNEIFESKSLLVGSAPKTSTTPGRSSSKPDSRSLRKTPGLKAKVGPTAACLRRKSESRTLGSDRALSPQRIRRVSGSGGHAAINKYEEKPPKQAFQNGSGPLYLKPLVPRAHSHLLKTSPKGPSRKSLFTAFNSVEKGRQKNPRSLCIQTQTAPDVLSSERTLELAQYKTKCESQSGFILHLRQLLSRGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVSLRGELVAASSACEKLEKARADLQTAYQEFVQKLNQQHQTDRTELENRLKDLYTAECEKLQSIYIEEAEKYKTQLQEQFDNLNAAHETTKLEIEASHSEKVELLKKTYETSLSEIKKSHEMEKKSLEDLLNEKQESLEKQINDLKSENDALNERLKSEEQKQLSREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAALQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSSAIPFQSPRNSGSFSSPSISPR", "length": 1210 }, "evidence": [ { "id": "A0A9J7F1G3", "url": "https://omabrowser.org/oma/group/A0A9J7F1G3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ULD2-1", "protein_name": "Microtubule-associated tumor suppressor 1", "gene_name": "MTUS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDDNSDDKIEDELQTFFTSDKDGNTHAYNPKSPPTQNSSASSVNWNSANPDDMVVDYETDPAVVTGENISLSLQGVEVFGHEKSSSDFISKQVLDMHKDSICQCPALVGTEKPKYLQHSCHSLEAVEGQSVEPSLPFVWKPNDNLNCAGYCDALELNQTFDMTVDKVNCTFISHHAIGKSQSFHTAGSLPPTGRRSGSTSSLSYSTWTSSHSDKTHARETTYDRESFENPQVTPSEAQDMTYTAFSDVVMQSEVFVSDIGNQCACSSGKVTSEYTDGSQQRLVGEKETQALTPVSDGMEVPNDSALQEFFCLSHDESNSEPHSQSSYRHKEMGQNLRETVSYCLIDDECPLMVPAFDKSEAQVLNPEHKVTETEDTQMVSKGKDLGTQNHTSELILSSPPGQKVGSSFGLTWDANDMVISTDKTMCMSTPVLEPTKVTFSVSPIEATEKCKKVEKGNRGLKNIPDSKEAPVNLCKPSLGKSTIKTNTPIGCKVRKTEIISYPRPNFKNVKAKVMSRAVLQPKDAALSKVTPRPQQTSASSPSSVNSRQQTVLSRTPRSDLNADKKAEILINKTHKQQFNKLITSQAVHVTTHSKNASHRVPRTTSAVKSNQEDVDKASSSNSACETGSVSALFQKIKGILPVKMESAECLEMTYVPNIDRISPEKKGEKENGTSMEKQELKQEIMNETFEYGSLFLGSASKTTTTSGRNISKPDSCGLRQIAAPKAKVGPPVSCLRRNSDNRNPSADRAVSPQRIRRVSSSGKPTSLKTAQSSWVNLPRPLPKSKASLKSPALRRTGSTPSIASTHSELSTYSNNSGNAAVIKYEEKPPKPAFQNGSSGSFYLKPLVSRAHVHLMKTPPKGPSRKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQLLACGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVNLRGELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIEEAEKYKMQLQEQFDNLNAAHETSKLEIEASHSEKLELLKKAYEASLSEIKKGHEIEKKSLEDLLSEKQESLEKQINDLKSENDALNEKLKSEEQKRRAREKANLKNPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSSAIPLQSPRNSGSFPSPSISPR", "length": 1270 }, "evidence": [ { "id": "A0A9J7F1G3", "url": "https://omabrowser.org/oma/group/A0A9J7F1G3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of macrophage chemotaxis", "id": "GO:0010758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010758", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1G3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 559, "end_pos": 561, "annotation": "n_glycosylation_sequon" }, { "start_pos": 583, "end_pos": 585, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 672, "end_pos": 674, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" }, { "start_pos": 767, "end_pos": 769, "annotation": "n_glycosylation_sequon" }, { "start_pos": 844, "end_pos": 846, "annotation": "n_glycosylation_sequon" }, { "start_pos": 886, "end_pos": 888, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 280 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 229, "end_pos": 231 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 257, "end_pos": 259 }, { "start_pos": 290, "end_pos": 292 }, { "start_pos": 370, "end_pos": 372 }, { "start_pos": 408, "end_pos": 410 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 559, "end_pos": 561 }, { "start_pos": 583, "end_pos": 585 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 672, "end_pos": 674 }, { "start_pos": 695, "end_pos": 697 }, { "start_pos": 767, "end_pos": 769 }, { "start_pos": 844, "end_pos": 846 }, { "start_pos": 886, "end_pos": 888 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N3G7-1", "uniprot_ac": "A0A8C2N3G7", "uniprot_id": "A0A8C2N3G7_CRIGR", "mass": { "chemical_mass": 20714.0, "monoisotopic_mass": 20714.0 }, "refseq": { "ac": "XP_003514009", "name": "ADP-ribosylation factor-like protein 5A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514009" }, "gene_names": [ { "name": "Arl5a", "type": "recommended", "evidence": [ { "id": "A0A8C2N3G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ] }, { "name": "Arl5a", "type": "synonym", "evidence": [ { "id": "XP_003514009", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514009" } ] } ], "protein_names": [ { "name": "ADP-ribosylation factor-like protein 5A", "type": "synonym", "evidence": [ { "id": "XP_003514009", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514009" }, { "id": "A0A8C2N3G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 180 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616245.1) and transcript sequence (IACG01061307.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514009", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514009" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arl5a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7", "locus": {} } ], "crossref": [ { "id": "cd04153", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04153", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765602", "url": "https://www.ncbi.nlm.nih.gov/gene/100765602", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765602", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765602", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ILFARIW", "url": "https://omabrowser.org/oma/group/ILFARIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N3G7", "url": "https://www.orthodb.org/?gene=A0A8C2N3G7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11711", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11711", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514009", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514009", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N3G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179, "header": "tr|A0A8C2N3G7-1|A0A8C2N3G7_CRIGR Isoform 1 of ADP-ribosylation factor-like protein 5A OS=Cricetulus griseus OX=10029 GN=Arl5a PE=3 SV=1 CANONICAL=A0A8C2N3G7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N3G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7/entry", "sequence": { "sequence": "MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179, "header": "tr|A0A8C2N3G7-1|A0A8C2N3G7_CRIGR Isoform 1 of ADP-ribosylation factor-like protein 5A OS=Cricetulus griseus OX=10029 GN=Arl5a PE=3 SV=1 CANONICAL=A0A8C2N3G7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765602", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765602", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287A3R6-1", "protein_name": "ADP ribosylation factor like GTPase 5A", "gene_name": "ARL5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0YCY3-1", "protein_name": "ARF like GTPase 5A", "gene_name": "ARL5A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLLSAIPAPGAELWEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTKEELYKMLAHEDLKKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P51646-1", "protein_name": "ADP-ribosylation factor-like protein 5A", "gene_name": "Arl5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KJ96-1", "protein_name": "ADP-ribosylation factor-like protein 5A", "gene_name": "ARL5A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6DHP0-1", "protein_name": "ADP-ribosylation factor-like protein 5A", "gene_name": "arl5a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGIIFTKLWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTHFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYRMLAHEDLKKAGLLIFANKQDVKGCLTVAEISQSLQLTSVKDHQWHIQACCALTGEGLCQGLEWMMSRLRVR", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80ZU0-1", "protein_name": "ADP-ribosylation factor-like protein 5A", "gene_name": "Arl5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VSG8-1", "protein_name": "ADP-ribosylation factor-like 5", "gene_name": "Arl5", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGLLLSRLWRMFGNEEHKLVMVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEVVWRNIHFLVWDLGGQQSLRAAWSTYYTNTELVIMVIDSTDRERLAVTREELYRMLQHEDLSKASLLVYANKQDLKGSMSAAEISRQLDLTSIKKHQWHIQACCALTGEGLYQGLEWIVQRIKNK", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y689-1", "protein_name": "ADP-ribosylation factor-like protein 5A", "gene_name": "ARL5A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR", "length": 179 }, "evidence": [ { "id": "A0A8C2N3G7", "url": "https://omabrowser.org/oma/group/A0A8C2N3G7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein localization to Golgi membrane", "id": "GO:1903292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903292", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N3G7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A8C2N3G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" }, { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 30, "amino_acid": "Thr", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 30, "end_pos": 30, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2N3G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3G7" }, { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 47, "amino_acid": "Thr", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 47, "end_pos": 47, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N3H7-1", "uniprot_ac": "A0A8C2N3H7", "uniprot_id": "A0A8C2N3H7_CRIGR", "mass": { "chemical_mass": 30263.0, "monoisotopic_mass": 30263.0 }, "refseq": { "ac": "XP_035292891", "name": "coiled-coil domain-containing protein 152 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035292891" }, "gene_names": [ { "name": "Ccdc152", "type": "recommended", "evidence": [ { "id": "A0A8C2N3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3H7" } ] }, { "name": "Ccdc152", "type": "synonym", "evidence": [ { "id": "XP_035292891", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035292891" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 152 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2N3H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N3H7/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 152 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035292891", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035292891" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615594.1) annotated using gene prediction method: Gnomon. 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Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304154" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N411", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N411" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100768594", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N411", "locus": {} } ], "crossref": [ { "id": "cd03590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768594", "url": "https://www.ncbi.nlm.nih.gov/gene/100768594", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768594", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768594", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N411", "url": "https://www.orthodb.org/?gene=A0A8C2N411", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22803", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22803", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03954", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03954", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304154", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N411", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N411", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N411-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N411-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTITYENFQNSGIEEKNPEIGKAAPPKSFLWDIFSWTRLLLFSLGLGLLLLVVVSVIGSQNSQLRRDLGTLKATSDNVTSNTKDELQALISRGDSLQEKINSLKVEVDDHRQELLAGRGLSQKVSSLESTVEKKEQQFKTGLSEITERVQELGKDLKALSCQLASLKNNGSAMACCPLHWVEHEDSCYWFSQSGKSWPDADKYCQLENAHLVVVNSMAEQNFLQGRLSNMITWMGLTDQNGPWQWVDGTDFEKGFKHWAPEQPDNWYGHGLGGGEDCAHITSDGRWNDDVCQKPFRWVCETKLAKDS", "length": 307, "header": "tr|A0A8C2N411-1|A0A8C2N411_CRIGR Isoform 1 of C-type lectin domain family 10 member A-like OS=Cricetulus griseus OX=10029 GN=LOC100768594 PE=4 SV=1 CANONICAL=A0A8C2N411-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N411-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N411/entry", "sequence": { "sequence": "MTITYENFQNSGIEEKNPEIGKAAPPKSFLWDIFSWTRLLLFSLGLGLLLLVVVSVIGSQNSQLRRDLGTLKATSDNVTSNTKDELQALISRGDSLQEKINSLKVEVDDHRQELLAGRGLSQKVSSLESTVEKKEQQFKTGLSEITERVQELGKDLKALSCQLASLKNNGSAMACCPLHWVEHEDSCYWFSQSGKSWPDADKYCQLENAHLVVVNSMAEQNFLQGRLSNMITWMGLTDQNGPWQWVDGTDFEKGFKHWAPEQPDNWYGHGLGGGEDCAHITSDGRWNDDVCQKPFRWVCETKLAKDS", "length": 307, "header": "tr|A0A8C2N411-1|A0A8C2N411_CRIGR Isoform 1 of C-type lectin domain family 10 member A-like OS=Cricetulus griseus OX=10029 GN=LOC100768594 PE=4 SV=1 CANONICAL=A0A8C2N411-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N455-1", "uniprot_ac": "A0A8C2N455", "uniprot_id": "A0A8C2N455_CRIGR", "mass": { "chemical_mass": 77095.0, "monoisotopic_mass": 77095.0 }, "refseq": { "ac": "XP_003505321", "name": "endoplasmic reticulum membrane-associated RNA degradation protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505321" }, "gene_names": [ { "name": "Ermard", "type": "recommended", "evidence": [ { "id": "A0A8C2N455", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455" } ] }, { "name": "Ermard", "type": "synonym", "evidence": [ { "id": "XP_003505321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505321" } ] } ], "protein_names": [ { "name": "Endoplasmic reticulum membrane-associated RNA degradation protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2N455", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455/entry#names_and_taxonomy" } ] }, { "name": "endoplasmic reticulum membrane-associated RNA degradation protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003505321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505321" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614132.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505321", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505321" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N455", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ermard", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455", "locus": {} } ], "crossref": [ { "id": "100752150", "url": "https://www.ncbi.nlm.nih.gov/gene/100752150", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752150", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QRGEVCW", "url": "https://omabrowser.org/oma/group/QRGEVCW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N455", "url": "https://www.orthodb.org/?gene=A0A8C2N455", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FCP7", "url": "https://www.orthodb.org/?gene=A0A9J7FCP7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FCR6", "url": "https://www.orthodb.org/?gene=A0A9J7FCR6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FDB0", "url": "https://www.orthodb.org/?gene=A0A9J7FDB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FER1", "url": "https://www.orthodb.org/?gene=A0A9J7FER1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J9J7", "url": "https://www.orthodb.org/?gene=A0A9J7J9J7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JF41", "url": "https://www.orthodb.org/?gene=A0A9J7JF41", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JFC1", "url": "https://www.orthodb.org/?gene=A0A9J7JFC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31701", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31701", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31701:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31701:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13910", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13910", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003505321", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505321", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N455", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N455-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FER1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FER1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FER1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FER1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEILTGDPITTCLSPLVRDLICHVGFELRENCDINSIVTQNGEVHWETLTDRVSYAESGQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 676, "header": "tr|A0A8C2N455-1|A0A8C2N455_CRIGR Isoform 1 of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N455-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455/entry", "sequence": { "sequence": "MEILTGDPITTCLSPLVRDLICHVGFELRENCDINSIVTQNGEVHWETLTDRVSYAESGQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 676, "header": "tr|A0A8C2N455-1|A0A8C2N455_CRIGR Isoform 1 of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP7/entry", "sequence": { "sequence": "MLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 470, "header": "tr|A0A9J7FCP7-1|A0A9J7FCP7_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X10 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCR6/entry", "sequence": { "sequence": "MEILTGDPITTCLSPLVRDLICHVGFELRENCDINSIVTQNGEVHWETLTDRVSYAESGQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 666, "header": "tr|A0A9J7FCR6-1|A0A9J7FCR6_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDB0/entry", "sequence": { "sequence": "MKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 585, "header": "tr|A0A9J7FDB0-1|A0A9J7FDB0_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X8 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FER1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FER1/entry", "sequence": { "sequence": "MEILTGDPITTCLSPLVRDLICHVGFELRENCDINSIVTQNGEVHWETLTDRVSYAESGQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPEVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 642, "header": "tr|A0A9J7FER1-1|A0A9J7FER1_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GUV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUV5/entry", "sequence": { "sequence": "MDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 507, "header": "tr|A0A9J7GUV5-1|A0A9J7GUV5_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X9 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J7/entry", "sequence": { "sequence": "MQNQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 620, "header": "tr|A0A9J7J9J7-1|A0A9J7J9J7_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JD29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD29/entry", "sequence": { "sequence": "MEILTGDPITTCLSPLVRDLICHVGFELRENCDINSIVTQNGEVHWETLTDRVSYAESGQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEFLWDFLNYQEGPRIRDRLSHGEINLREFPREAASQLLTFSLVLLLRFTEEGSLSELKEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRETWQHKGKKAKVCHISTQRDLWAGPSLDVCLPCLNLSQVALKSLESCSVT", "length": 665, "header": "tr|A0A9J7JD29-1|A0A9J7JD29_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF41/entry", "sequence": { "sequence": "MEILTGDPITTCLSPLVRDLICHVGFELRENCDINSIVTQNGEVHWETLTDRVSYAESGQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAEILAKHLKDGNINQLPHFLGDPAMEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 608, "header": "tr|A0A9J7JF41-1|A0A9J7JF41_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFC1/entry", "sequence": { "sequence": "MEILTGDPITTCLSPLVRDLICHVGFELRENCDINSIVTQNGEVHWETLTDRVSYAESGQSLDYRGSIRLLGPVCESIHLHILSLTRAQFEMKYSPWFQWTVYPELFLEVFDALESLQSPAISLSVMKLASCLERALGDVFLLIGKECSFLLRDLLASAELSQVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSTMLLLTAGLGQLLKSYLHQTKVTLAHRPFATLTNLEDVIVFPGVTYEVLSALEKVMTESAFLLKIMLPYWEMAVTKFKLHRFADCTMLLLSQLEAGLRRVFAAVNKCPDRLLTAESTILYTTFDEILAKHLKDGNINQLPHFLGDPAMEEAAIQFLVSLAEGYRSRCHPVFQLQKQVLSCEESLRMWSMLPTLEEPCQEAARLEGNSEAYACNSLISKILCEFCHYMPGSTCAMDGLPPEKWPQLLKELCSTHIPTLFCPRLVLEVLVVLRGISSQCQRVSDQVTTSLQLRHRQWVEHKLRSRQRQNYLRMLNSVKLLSPVLHLTLLLLALEVVSVHAVQGKSSQERHQYLRFLKSILQYTENLVSYTNREKNKWNETIKLTHAVLLRILTFSEKKQMLMHLTKNSTNQVDTS", "length": 618, "header": "tr|A0A9J7JFC1-1|A0A9J7JFC1_CRIGR Computationally mapped isoform of Endoplasmic reticulum membrane-associated RNA degradation protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Ermard PE=4 SV=1 CANONICAL=A0A8C2N455-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N455", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N455", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752150", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3B8R1-1", "protein_name": "Endoplasmic reticulum membrane-associated RNA degradation protein", "gene_name": "Ermard", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEILTGDSITTCLSPLVHDLICNLGFELTEICDINSIVTQNGEVRWKAITDRVSYAELGHSLDYRQSVQRLGPVCEAIHLHISSLSRAQFETQYSPWYQWTTSPELFLEIYDALESSQSAAISLSVMKLASCLERALGDVFLLIGNECPFLLRDLLASAELAHVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSALLLLTAGLGQLLKSYLHHTKVQLAHRPFVTLTNLEDVIVFPGVTDKVLSALETVMTKSSFLLKIMLPYWELAVSKFKSHRFADCTMLLLSQLEAGLRRVFATVNKCPDRLLTAESTILYTTFDEILAKHMSDGSINQLPCFLGEPAMDFLWDFLNYQEGPRIRDRLSHGEINIREFPKAAASQLLTFCLVLLLRFTEEDTLSELKEEAAIQLLVSLAERYRSRCHPAFQLQKQVLSCEKSLRMWPVLPLPEECCQEAGRSEGNSEACACNSLISKILCELCHYLPASACAINGLDGLPSEKWSQLLNELCNTRIPTLFCPKIVLEVLVVLRGISSQCQRVSDQVIASLQLRHRQWVEHTLRSRQRQNYVRMLSSVGLLCPVLSLILLLLALELVSVHAVHGKDAQERQQYLRFLKLILQYTENLVAYTSRQKNKWNEAVSLTRAVLLRIWTFSEKKQMLIHLTKNTNKVDTG", "length": 678 }, "evidence": [ { "id": "A0A8C2N455", "url": "https://omabrowser.org/oma/group/A0A8C2N455/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5T6L9-1", "protein_name": "Endoplasmic reticulum membrane-associated RNA degradation protein", "gene_name": "ERMARD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVLIGDPITTCLSPSVYDIICNLGFQLRENCDINSIVTQNGEVCWKTITDCVSYTESEQGLDYWGSVRLLGPVCEAVHSHFLSLTKGQFEIRYAPWFQWTSFPELFPEIFDALESLQSPAISLSLMKLTSCLERALGDVFLLIGKECPFLLRDLLSSEELAQVFSQSVMNVLKVFVGSPCGLNLRNVLWHGFASPEEIPPKYCSMMILLTAGLGQLLKSYLQNTKLTLAHRSFISLTNLEDLIVFPDVTYEVLSVLEEVMMKSAFILKIMLPYWEVALVKFKSHRFADCAILLLTQLETGLRNVFATLNRCPKRLLTAESTALYTTFDQILAKHLNDGKINQLPLFLGEPAMEFLWDFLNHQEGPRIRDHLSHGEINLHEFSKETTNQLLAFSLVLLLRFVDDCLLSVFKEKSAVELLISLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNACHSLITKMTDELYHHMPENRCVLKDLDRLPTETWPQLLRELCSTPVPTLFCPRIVLEVLVVLRSISEQCRRVSSQVTVASELRHRQWVERTLRSRQRQNYLRMWSSIRLLSPVLSLILLLIALELVNIHAVCGKNAHEYQQYLKFVKSILQYTENLVAYTSYEKNKWNETINLTHTALLKMWTFSEKKQMLIHLAKKSTSKVLL", "length": 678 }, "evidence": [ { "id": "A0A8C2N455", "url": "https://omabrowser.org/oma/group/A0A8C2N455/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N455", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N455" }, { "id": "PF13910", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13910" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endoplasmic reticulum membrane-associated RNA degradation protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 133, "end_pos": 213, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 639, "end_pos": 641 }, { "start_pos": 668, "end_pos": 670 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N490-1", "uniprot_ac": "A0A8C2N490", "uniprot_id": "A0A8C2N490_CRIGR", "mass": { "chemical_mass": 42312.0, "monoisotopic_mass": 42312.0 }, "refseq": { "ac": "XP_027250914", "name": "phytanoyl-CoA hydroxylase-interacting protein-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250914" }, "gene_names": [ { "name": "Phyhipl", "type": "recommended", "evidence": [ { "id": "A0A8C2N490", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490" } ] }, { "name": "Phyhipl", "type": "synonym", "evidence": [ { "id": "XP_027250914", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250914" } ] } ], "protein_names": [ { "name": "Phytanoyl-CoA hydroxylase-interacting protein-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2N490", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490/entry#names_and_taxonomy" } ] }, { "name": "phytanoyl-CoA hydroxylase-interacting protein-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027250914", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250914" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250914", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250914" } ] }, { "annotation": "May play a role in the development of the central system.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N490", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490#function" }, { "database": "UniProtKB", "id": "ARBA00037571", "url": "https://www.uniprot.org/uniprotkb/ARBA00037571#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N490", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Phyhipl", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490", "locus": {} } ], "crossref": [ { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760806", "url": "https://www.ncbi.nlm.nih.gov/gene/100760806", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760806", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760806", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N490", "url": "https://www.orthodb.org/?gene=A0A8C2N490", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15698", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15698", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15698:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15698:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19281", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19281", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250914", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250914", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N490", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N490-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVPRLDHALSSPSSPCEEIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDPKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKADVIAGRMLKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVALSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR", "length": 375, "header": "tr|A0A8C2N490-1|A0A8C2N490_CRIGR Isoform 1 of Phytanoyl-CoA hydroxylase-interacting protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Phyhipl PE=3 SV=1 CANONICAL=A0A8C2N490-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N490-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N490/entry", "sequence": { "sequence": "MEVPRLDHALSSPSSPCEEIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDPKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKADVIAGRMLKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIYTDPVALSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR", "length": 375, "header": "tr|A0A8C2N490-1|A0A8C2N490_CRIGR Isoform 1 of Phytanoyl-CoA hydroxylase-interacting protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Phyhipl PE=3 SV=1 CANONICAL=A0A8C2N490-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295157", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295157" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Asb18", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5", "locus": {} } ], "crossref": [ { "id": "cd03723", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03723", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768096", "url": "https://www.ncbi.nlm.nih.gov/gene/100768096", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768096", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768096", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N4A5", "url": "https://www.orthodb.org/?gene=A0A8C2N4A5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295157", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295157", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N4A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N4A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSWDSPPDYPLSSDLVGRLKSALATGDNDTVQELICTEVEPVDAVIELANDDWMKEPSAQLPTGALLGDLDHIRFLMDQFFQDANVVFEISNGEMEWQLTSLATFGLSGLWTLEYKRELTTPLCIAAAHGHEFSVRHLLSRNADPDASPGGRAALHEACLGGHTACTQLLLQHGADPDLLSAEGLAPLHLCRTPASLGCAQALLEHGATVQLECGPGRDTPLHVAAQHGLDEHAQLYLDSGARVDARNGRGETALSAACGTATRSPDEHARCLRLCALLLRGGAAADARDEDERSPLHKACGRARPSLCTLLLLHGADAGALDYGGASPLARALQTATCAPPAAPQRTVQALLNLGSPLVWPDAFPKVLRTCAQVPAVIEVLFNSYTQLCVSESWQEAIPEEVYQMHERFYRSFFALAHTPRCLQHLCRCAIRKLLGKKCFHLVPQLPLPETLQNYLLLEPEGVLH", "length": 467, "header": "tr|A0A8C2N4A5-1|A0A8C2N4A5_CRIGR Isoform 1 of Ankyrin repeat and SOCS box protein 18 isoform X2 OS=Cricetulus griseus OX=10029 GN=Asb18 PE=3 SV=1 CANONICAL=A0A8C2N4A5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N4A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5/entry", "sequence": { "sequence": "MSSWDSPPDYPLSSDLVGRLKSALATGDNDTVQELICTEVEPVDAVIELANDDWMKEPSAQLPTGALLGDLDHIRFLMDQFFQDANVVFEISNGEMEWQLTSLATFGLSGLWTLEYKRELTTPLCIAAAHGHEFSVRHLLSRNADPDASPGGRAALHEACLGGHTACTQLLLQHGADPDLLSAEGLAPLHLCRTPASLGCAQALLEHGATVQLECGPGRDTPLHVAAQHGLDEHAQLYLDSGARVDARNGRGETALSAACGTATRSPDEHARCLRLCALLLRGGAAADARDEDERSPLHKACGRARPSLCTLLLLHGADAGALDYGGASPLARALQTATCAPPAAPQRTVQALLNLGSPLVWPDAFPKVLRTCAQVPAVIEVLFNSYTQLCVSESWQEAIPEEVYQMHERFYRSFFALAHTPRCLQHLCRCAIRKLLGKKCFHLVPQLPLPETLQNYLLLEPEGVLH", "length": 467, "header": "tr|A0A8C2N4A5-1|A0A8C2N4A5_CRIGR Isoform 1 of Ankyrin repeat and SOCS box protein 18 isoform X2 OS=Cricetulus griseus OX=10029 GN=Asb18 PE=3 SV=1 CANONICAL=A0A8C2N4A5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768096", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768096", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N4A5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4A5" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", 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{ "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N7X9-1", "uniprot_ac": "A0A8C2N7X9", "uniprot_id": "A0A8C2N7X9_CRIGR", "mass": { "chemical_mass": 93743.0, "monoisotopic_mass": 93743.0 }, "refseq": { "ac": "XP_007644923", "name": "EVI5-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644923" }, "gene_names": [ { "name": "Evi5l", "type": "recommended", "evidence": [ { "id": "A0A8C2N7X9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9" } ] }, { "name": "Evi5l", "type": "synonym", "evidence": [ { "id": "XP_007644923", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644923" } ] } ], "protein_names": [ { "name": "EVI5-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007644923", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644923" }, { "id": "A0A8C2N7X9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614218.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007644923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644923" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N7X9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Evi5l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9", "locus": {} } ], "crossref": [ { "id": "100755001", "url": "https://www.ncbi.nlm.nih.gov/gene/100755001", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755001", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755001", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N4G6", "url": "https://www.orthodb.org/?gene=A0A8C2N4G6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N7X9", "url": "https://www.orthodb.org/?gene=A0A8C2N7X9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2NCB2", "url": "https://www.orthodb.org/?gene=A0A8C2NCB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FYX7", "url": "https://www.orthodb.org/?gene=A0A9J7FYX7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23436", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23436", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27580", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27580", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007644923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644923", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N4G6", "url": 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"MSLPTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTENRLLKQRIETLEKESAALADRLIQGQVTRAQEAEENYVIKRELAVVRQQCSSTAEDLQKAQSTIRQLQEQQENPRLTEDFVAHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPDENNVARLQEELKALKVRESEAVASARELKLQLQELSDTWQAHLSRGGRWKESPRKLVLGELQDELMTVRLREAQALADGREWRQRVVELETQDNIHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQYIRELKDQIEELKAEVRLLKGPPTFEDPLAFDGLSLTRHLDEDSLPSSDEELLGVGVGVGVGAALQDPLYPLSPRDARFFRRLERPAKDSEGSSDSDADELATPYSNQGLDN", "length": 815, "header": "tr|A0A8C2N7X9-1|A0A8C2N7X9_CRIGR Isoform 1 of EVI5-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Evi5l PE=4 SV=1 CANONICAL=A0A8C2N7X9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N4G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4G6/entry", "sequence": { "sequence": "MSLPTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKHRVGAPVLTGTSSELATQQ", "length": 406, "header": "tr|A0A8C2N4G6-1|A0A8C2N7X9_CRIGR Computationally mapped isoform of EVI5-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Evi5l PE=4 SV=1 CANONICAL=A0A8C2N7X9-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N7X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9/entry", "sequence": { "sequence": "MSLPTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTENRLLKQRIETLEKESAALADRLIQGQVTRAQEAEENYVIKRELAVVRQQCSSTAEDLQKAQSTIRQLQEQQENPRLTEDFVAHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPDENNVARLQEELKALKVRESEAVASARELKLQLQELSDTWQAHLSRGGRWKESPRKLVLGELQDELMTVRLREAQALADGREWRQRVVELETQDNIHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQYIRELKDQIEELKAEVRLLKGPPTFEDPLAFDGLSLTRHLDEDSLPSSDEELLGVGVGVGVGAALQDPLYPLSPRDARFFRRLERPAKDSEGSSDSDADELATPYSNQGLDN", "length": 815, "header": "tr|A0A8C2N7X9-1|A0A8C2N7X9_CRIGR Isoform 1 of EVI5-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Evi5l PE=4 SV=1 CANONICAL=A0A8C2N7X9-1" }, "locus": {} }, { "isoform_ac": "A0A8C2NCB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NCB2/entry", "sequence": { "sequence": "MSLPTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTENRLLKQRIETLEKGQVTRAQEAEENYVIKRELAVVRQQCSSTAEDLQKAQSTIRQLQEQQENPRLTEDFVAHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPDENNVARLQEELKALKVRESEAVASARELKLQLQELSDTWQAHLSRGGRWKESPRKLVLGELQDELMTVRLREAQALADGREWRQRVVELETQDNIHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQYIRELKDQIEELKAEVRLLKGPPTFEDPLAFDGLSLTRHLDEDSLPSSDEELLGVGVGVGVGAALQDPLYPLSPRDARFFRRLERPAKDSEGSSDSDADELATPYSNQGLDN", "length": 804, "header": "tr|A0A8C2NCB2-1|A0A8C2NCB2_CRIGR Computationally mapped isoform of EVI5-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Evi5l PE=4 SV=1 CANONICAL=A0A8C2N7X9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYX7/entry", "sequence": { "sequence": "MSLPTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTENRLLKQRIETLEKESAALADRLIQGQVTRAQEAEENYVIKRELAVVRQQCSSTAEDLQKAQSTIRQLQEQQENPRLTEDFVAHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPDENNVARLQEELKALKVRESEAVASARELKLQLQELSDTWQAHLSRGGRWKESPRKLVLGELQDELMTVRLREAQALADGREWRQRVVELETQDNIHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQYIRELKDQIEELKAEGYISLHLQCAGAPSPLPAHPRCGC", "length": 742, "header": "tr|A0A9J7FYX7-1|A0A9J7FYX7_CRIGR Computationally mapped isoform of EVI5-like protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Evi5l PE=4 SV=1 CANONICAL=A0A8C2N7X9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXV3/entry", "sequence": { "sequence": "MSLPTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTENRLLKQRIETLEKESAALADRLIQGQVTRAQEAEENYVIKRELAVVRQQCSSTAEDLQKAQSTIRQLQEQQENPRLTEDFVAHLETELEQSRLRETETLGALREMQDKVLDMEKAHLSRGGRWKESPRKLVLGELQDELMTVRLREAQALADGREWRQRVVELETQDNIHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQYIRELKDQIEELKAEVRLLKGPPTFEDPLAFDGLSLTRHLDEDSLPSSDEELLGVGVGVGVGAALQDPLYPLSPRDARFFRRLERPAKDSEGSSDSDADELATPYSNQGLDN", "length": 768, "header": "tr|A0A9J7GXV3-1|A0A9J7GXV3_CRIGR Computationally mapped isoform of EVI5-like protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Evi5l PE=4 SV=1 CANONICAL=A0A8C2N7X9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7P8/entry", "sequence": { "sequence": "MSLPTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQEQLPDLNTHFRSQSFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTENRLLKQRIETLEKESAALADRLIQGQVTRAQEAEENYVIKRELAVVRQQCSSTAEDLQKAQSTIRQLQEQQENPRLTEDFVAHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPDENNVARLQEELKALKVRESEAVASARELKLQLQELSDTWQAHLSRGGRWKESPRKLVLGELQDELMTVRLREAQALADGREWRQRVVELETQDNIHRNLLNRVEAERAALQEKLQYLAAQNKGLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQYIRELKDQIEELKAEVRLLKGPPTFEDPLAFDGLSLTRHLDEDSLPSSDEELLGVGVGVGVGAALQDPLYPLSPRDARFFRRLERPAKDSEGSSDSDADELATPYSNQGLDN", "length": 773, "header": "tr|A0A9J7K7P8-1|A0A9J7K7P8_CRIGR Computationally mapped isoform of EVI5-like protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Evi5l PE=4 SV=1 CANONICAL=A0A8C2N7X9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4G6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4G6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4G6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4G6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755001", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755001", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N7X9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N7X9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of cilium assembly", "id": "GO:1902018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902018", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N7X9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 508, "end_pos": 510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" }, { "start_pos": 697, "end_pos": 699, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N7X9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N7X9" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 120, "end_pos": 305, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 320, "end_pos": 322 }, { "start_pos": 34, "end_pos": 36 }, { "start_pos": 508, "end_pos": 510 }, { "start_pos": 64, "end_pos": 66 }, { "start_pos": 697, "end_pos": 699 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N4H1-1", "uniprot_ac": "A0A8C2N4H1", "uniprot_id": "A0A8C2N4H1_CRIGR", "mass": { "chemical_mass": 45861.0, "monoisotopic_mass": 45861.0 }, "refseq": { "ac": "XP_003514408", "name": "arylacetamide deacetylase-like 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514408" }, "gene_names": [ { "name": "Aadacl3", "type": "recommended", "evidence": [ { "id": "A0A8C2N4H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1" } ] }, { "name": "Aadacl3", "type": "synonym", "evidence": [ { "id": "XP_003514408", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514408" } ] } ], "protein_names": [ { "name": "Arylacetamide deacetylase-like 3", "type": "synonym", "evidence": [ { "id": "A0A8C2N4H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1/entry#names_and_taxonomy" } ] }, { "name": "arylacetamide deacetylase-like 3", "type": "synonym", "evidence": [ { "id": "XP_003514408", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514408" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616544.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514408", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514408" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4H1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Aadacl3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1", "locus": {} } ], "crossref": [ { "id": "100751803", "url": "https://www.ncbi.nlm.nih.gov/gene/100751803", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013094", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013094", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751803", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751803", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLWVICS", "url": "https://omabrowser.org/oma/group/TLWVICS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N4H1", "url": "https://www.orthodb.org/?gene=A0A8C2N4H1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48081", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48081", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48081:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48081:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07859", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07859", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514408", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514408", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N4H1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N4H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPLALTLLVAAVASFSLGVLLWVICIHFWTEHIPKGITHPVRLRILSCLLHLTLTWGMIFEKLGLCYATQFASFLHDLKPLKRDPDIVVTDLRFGTIPVKLYQPKESSSTLRTGIIFFHGGGTVLGSLRTHHNVCLRLSKDCGSVVLAVGYRKSPKYKYPAMKNDCVAATAQFLKSLHVYGVDPSRVVVCGDSVGGNAATVICQLFRNKADFPQIRAQILIYSSLQSIDFRGPSYQQNANIPLLSWNLAFYCCCCHLDVSTSWKSVIKSGTHLPPEVWEKYRKWLGSENIPERFKKRGYQCIPPGPVNEDAYREITLALNSICSPLIAEDDIVSQLPETCIVSCEYDLLRDHSLLYKKRLEDLGVPVTWHHMEDGFHGVLNTLDFGFLSFPCSSRIMDLVAQFIRKL", "length": 408, "header": "tr|A0A8C2N4H1-1|A0A8C2N4H1_CRIGR Isoform 1 of Arylacetamide deacetylase-like 3 OS=Cricetulus griseus OX=10029 GN=Aadacl3 PE=3 SV=1 CANONICAL=A0A8C2N4H1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N4H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1/entry", "sequence": { "sequence": "MVPLALTLLVAAVASFSLGVLLWVICIHFWTEHIPKGITHPVRLRILSCLLHLTLTWGMIFEKLGLCYATQFASFLHDLKPLKRDPDIVVTDLRFGTIPVKLYQPKESSSTLRTGIIFFHGGGTVLGSLRTHHNVCLRLSKDCGSVVLAVGYRKSPKYKYPAMKNDCVAATAQFLKSLHVYGVDPSRVVVCGDSVGGNAATVICQLFRNKADFPQIRAQILIYSSLQSIDFRGPSYQQNANIPLLSWNLAFYCCCCHLDVSTSWKSVIKSGTHLPPEVWEKYRKWLGSENIPERFKKRGYQCIPPGPVNEDAYREITLALNSICSPLIAEDDIVSQLPETCIVSCEYDLLRDHSLLYKKRLEDLGVPVTWHHMEDGFHGVLNTLDFGFLSFPCSSRIMDLVAQFIRKL", "length": 408, "header": "tr|A0A8C2N4H1-1|A0A8C2N4H1_CRIGR Isoform 1 of Arylacetamide deacetylase-like 3 OS=Cricetulus griseus OX=10029 GN=Aadacl3 PE=3 SV=1 CANONICAL=A0A8C2N4H1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4H1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4H1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751803", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751803", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SWQ7-1", "protein_name": "Arylacetamide deacetylase like 3", "gene_name": "AADACL3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RMLISFFLLLLAIACVASVGVGLWVFSNHFLTTDIPAAISHPMRLRVLNCILQLLITWGLIFEKLRICSMPQFVRFVHDLLPLKKHPDVVVKDLQFGTIPVKLYQPKAPASGLRPGIVFYHGGGGILGSLKTYHGICCNLCKKSDAVVLAVGYRMLPKHRFPVILTDCMVGTMHFLKSLDTYGVDPARVIVCGDSVGGSVATVLCQKFVDRSDLPKIRAQILIYSALQGLNFQSPSHQQNKNIPLLNHNLAFYCWCGYLDISPSWISTVLKGAHLPAEVWEKYRKWLSAENIPDKFKKRGYLPMSREPLNEAAYLETKITLDVVNSPLIADDEVVSRLPEACIVSCEYDILRDDSLLYKKRLEDLGVRVTWHHMEDGFHGVLTTADMSFFYFPCSSRILDAVAHFIKGL", "length": 409 }, "evidence": [ { "id": "A0A8C2N4H1", "url": "https://omabrowser.org/oma/group/A0A8C2N4H1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A2A7Z8-1", "protein_name": "Arylacetamide deacetylase-like 3", "gene_name": "Aadacl3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVVLALTLLVGSVAVFSLGSLLWVVGKHFWTEHIPEGITHPWRLRILSCLFHLTMTWGMIFEKLGLCYAPQFASFLHDLKPLKRDPDVVVKDLHFGTIPVKLYKPKKPSSIPRLGIIFFHGGGTIIGSLRTHNSICLRLSKECDSVVVSVGYRKSPMYKYPVMKDDCVVATTHFLESLDVYGVDPARVVTCGDSVGGTAATVTSQMLVHRPDLPRIKAQILIYPLLQLIDFGSPSYQQNRNIPLLSWDLAFYCFCCHLDVNISWKSVVKNGMHLPPDVWEKYRKWLGAENIPERFKNRGYKSIPWGPVNNDAYQEIKRSLNYTCSPLISEDSIVSQLPETCIVSCEYDLLRDHSLLYKKRLEDLGVPVTWHHMEDGFHGVLSALDYGLLSFPCASRIMDLIIQFIRKF", "length": 408 }, "evidence": [ { "id": "A0A8C2N4H1", "url": "https://omabrowser.org/oma/group/A0A8C2N4H1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZCR8-1", "protein_name": "Arylacetamide deacetylase-like 3", "gene_name": "Aadacl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVLALTLLVDAVAVFLLGSVLWVICRHLWTEHIPEGITHPMRLRVLSCLLQLSLTWGMLFEKLGLCYAPQFASFLHDLMPLKKDPDVVVKDVHFETIPVKLYKPKKPSSVPRIGIIFFHGGGTILGSLRTHHSICLRLSKDCDAVVISVGYRKSPMYKYPVMKDDCVAATTHFLRSLDVYGVDPDRLVVCGDSVGGTAAAVTSQTVVHRKDLPQIRAQILIYPSLQLVDFGSPSYQQNFNVPLLTSNLALYCFCCHLDVKLSWQSVIKSGRHLPPEIWEKYRKWLGVENIPERFKKQGYKPIPRGPVNNEVYQEIKTALNNTCSPLLAEDSLVSQLPETCIVSCEYDLFRDHSLLYKKRLEALGVPVTWHHMEDGFHGVLNTFEFGLLSIPCSLRIMDLIIRFIKKF", "length": 408 }, "evidence": [ { "id": "A0A8C2N4H1", "url": "https://omabrowser.org/oma/group/A0A8C2N4H1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5VUY0-1", "protein_name": "Arylacetamide deacetylase-like 3", "gene_name": "AADACL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWDLALIFLAAACVFSLGVTLWVICSHFFTVHIPAAVGHPVKLRVLHCIFQLLLTWGMIFEKLRICSMPQFFCFMQDLPPLKYDPDVVVTDFRFGTIPVKLYQPKASTCTLKPGIVYYHGGGGVMGSLKTHHGICSRLCKESDSVVLAVGYRKLPKHKFPVPVRDCLVATIHFLKSLDAYGVDPARVVVCGDSFGGAIAAVVCQQLVDRPDLPRIRAQILIYAILQALDLQTPSFQQRKNIPLLTWSFICYFFFQNLDFSSSWQEVIMKGAHLPAEVWEKYRKWLGPENIPERFKERGYQLKPHEPMNEAAYLEVSVVLDVMCSPLIAEDDIVSQLPETCIVSCEYDALRDNSLLYKKRLEDLGVPVTWHHMEDGFHGVLRTIDMSFLHFPCSMRILSALVQFVKGL", "length": 407 }, "evidence": [ { "id": "A0A8C2N4H1", "url": "https://omabrowser.org/oma/group/A0A8C2N4H1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4H1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "carboxylic ester hydrolase activity", "id": "GO:0052689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052689", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4H1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N4H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4H1" }, { "id": "PF07859", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07859" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Alpha/beta hydrolase fold-3", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 246, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N5H3-1", "uniprot_ac": "A0A8C2N5H3", "uniprot_id": "A0A8C2N5H3_CRIGR", "mass": { "chemical_mass": 40661.0, "monoisotopic_mass": 40661.0 }, "refseq": { "ac": "XP_027288017", "name": "transmembrane protein 185A isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288017" }, "gene_names": [ { "name": "Tmem185a", "type": "recommended", "evidence": [ { "id": "A0A8C2N5H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3" } ] }, { "name": "Tmem185a", "type": "synonym", "evidence": [ { "id": "XP_027288017", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288017" } ] } ], "protein_names": [ { "name": "Transmembrane protein 185A isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2N5H3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 185A isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027288017", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288017" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288017", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288017" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5H3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem185a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3", "locus": {} } ], "crossref": [ { "id": "103163527", "url": "https://www.ncbi.nlm.nih.gov/gene/103163527", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019396", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019396", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163527", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163527", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N5H3", "url": "https://www.orthodb.org/?gene=A0A8C2N5H3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13568", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13568", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13568:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13568:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13568:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13568:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10269", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10269", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288017", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288017", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N4J2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N4J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4J2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N5H3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N5H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLRGLFQDFNPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIVGASVGTGVWARNPQYRAEGETCVEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCSVNILQFIFIALRLDKIIHWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVIAEQRRTHITMALSWMTIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHWWFGIRKDFCQFLLEIFPFLREYGNISYDLHHEDNEETEETPIPEPPKIAPMFRKKARVVITQSPGKYVLPPPKLNIEMPD", "length": 350, "header": "tr|A0A8C2N5H3-1|A0A8C2N5H3_CRIGR Isoform 1 of Transmembrane protein 185A isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem185a PE=4 SV=1 CANONICAL=A0A8C2N5H3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N4J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4J2/entry", "sequence": { "sequence": "MNLRGLFQDFNPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIVGASVGTGVWARNPQYRAEGETCVEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLEVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVIAEQRRTHITMALSWMTIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHWWFGIRKDFCQFLLEIFPFLREYGNISYDLHHEDNEETEETPIPEPPKIAPMFRKKARVVITQSPGKYVLPPPKLNIEMPD", "length": 322, "header": "tr|A0A8C2N4J2-1|A0A8C2N5H3_CRIGR Computationally mapped isoform of Transmembrane protein 185A isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem185a PE=4 SV=1 CANONICAL=A0A8C2N5H3-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N5H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3/entry", "sequence": { "sequence": "MNLRGLFQDFNPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIVGASVGTGVWARNPQYRAEGETCVEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCSVNILQFIFIALRLDKIIHWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVIAEQRRTHITMALSWMTIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHWWFGIRKDFCQFLLEIFPFLREYGNISYDLHHEDNEETEETPIPEPPKIAPMFRKKARVVITQSPGKYVLPPPKLNIEMPD", "length": 350, "header": "tr|A0A8C2N5H3-1|A0A8C2N5H3_CRIGR Isoform 1 of Transmembrane protein 185A isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem185a PE=4 SV=1 CANONICAL=A0A8C2N5H3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4J2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4J2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103163527", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163527", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5H3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5H3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613817.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500930", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500930" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4R2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zmym6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2", "locus": {} } ], "crossref": [ { "id": "100766000", "url": "https://www.ncbi.nlm.nih.gov/gene/100766000", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010507", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MKEPLDGECDKAMAQHGLLDKIKEEPDNAQEYGLQESELKISAVFSANDTSLGFQLGPLSPGSNTSFPSVPAAHVFCSGCKKLLHKTGCAQLFCSKECIIRYSSAVCLSPQPKRTCTHCSKDILNPMDVITTKVEDASSCKDFCSQLCLSSYELKKPVVTVYTSGVSTKCRMCQKVTDNLSQKPLYALGNSLKPFAEVNEITNDPGKTELFCSINCLSAYRIKTVISSGLQVLCHSCKTAAVPQYHVAMSDGTICSFCSSNCVLAFQNVFNKPEGTNSSLAPVSLGQEVINTPLQSTVSEGKGAPVSSFSGPISRPAADALETLAKQSQQIALTHSFMRLKCQHCNHLFARKPELLFYKGRMFLFCGKVCSEEYKRKNKVMALCDYCKIYKIIKDIVRFSGVDKPFCSEVCKSLSAQDFAERWANCCKMCSYCLQTSANFVESRLEGRLQVFCGEECMTKFTALFYQTAKCDGCKRQGKLSESLKWRGNIKYFCNLFCVLKFCHHYSVNDPVHKKVLLLPKSVSVIIPKAQTALTALPSPRIATTPVITSVISLAKLPALQPTKNVNSDLTGAGPKEAAKIIGNGNALADAERLQSLPPPMLQKNKGILCRPVTQTKATSCRPHTHHVECQTDFPLQNEKNEEPDSPPAKKKRMDFFQTYDAEYIKFGFIICSGSKESSPRAQCVICGEILPRESVMPVSLSNHLKAKHSELENKPVDFFEEKSLEMECQDSPLNKCLLVEESLVKASYLIAFQIAARKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNNTIECRINTLSADIEDQLVQKLRDSRWFALQIDESPETSDVTLLLCYVRFIDYDCDDVKEEFLFCTEMPSPSTDLQVFELISKYIDSRSLNWNHCVGFCTDGAASMTDRRSCLKSKIQEITKNTVVFTHCFIHREHLAAEKLSPGLHEILLQSAQILSFVKNSASDSKMLTVLCEEMGSELVNLPLSAELRWLSRGRILTRLFELRQEIEILLNQKHSDLARYFHDKEWVAKLAYLADMFSLINKLNSGLQGTMATLFNLYNKVDIFKRKLKAWLKRTQENDYDMFPLFSEFLDSSGVSVESITSMIVEHLQGLSQIFHDCYPPEEDLRLGNLWLIDPFASHQNNNLTDSEEEKLAALSSDTSLRSAYKSMSVTQFWVRAKTSHPELHEKAVKLLLPFSTFCLCDATFSALTASKQRNLLGFGPALRLAVTSLVPRIEKLVKEKE", "length": 1241, "header": "tr|A0A8C2N4R2-1|A0A8C2N4R2_CRIGR Isoform 1 of Zinc finger MYM-type protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zmym6 PE=4 SV=1 CANONICAL=A0A8C2N4R2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N4R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2/entry", "sequence": { "sequence": "MKEPLDGECDKAMAQHGLLDKIKEEPDNAQEYGLQESELKISAVFSANDTSLGFQLGPLSPGSNTSFPSVPAAHVFCSGCKKLLHKTGCAQLFCSKECIIRYSSAVCLSPQPKRTCTHCSKDILNPMDVITTKVEDASSCKDFCSQLCLSSYELKKPVVTVYTSGVSTKCRMCQKVTDNLSQKPLYALGNSLKPFAEVNEITNDPGKTELFCSINCLSAYRIKTVISSGLQVLCHSCKTAAVPQYHVAMSDGTICSFCSSNCVLAFQNVFNKPEGTNSSLAPVSLGQEVINTPLQSTVSEGKGAPVSSFSGPISRPAADALETLAKQSQQIALTHSFMRLKCQHCNHLFARKPELLFYKGRMFLFCGKVCSEEYKRKNKVMALCDYCKIYKIIKDIVRFSGVDKPFCSEVCKSLSAQDFAERWANCCKMCSYCLQTSANFVESRLEGRLQVFCGEECMTKFTALFYQTAKCDGCKRQGKLSESLKWRGNIKYFCNLFCVLKFCHHYSVNDPVHKKVLLLPKSVSVIIPKAQTALTALPSPRIATTPVITSVISLAKLPALQPTKNVNSDLTGAGPKEAAKIIGNGNALADAERLQSLPPPMLQKNKGILCRPVTQTKATSCRPHTHHVECQTDFPLQNEKNEEPDSPPAKKKRMDFFQTYDAEYIKFGFIICSGSKESSPRAQCVICGEILPRESVMPVSLSNHLKAKHSELENKPVDFFEEKSLEMECQDSPLNKCLLVEESLVKASYLIAFQIAARKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNNTIECRINTLSADIEDQLVQKLRDSRWFALQIDESPETSDVTLLLCYVRFIDYDCDDVKEEFLFCTEMPSPSTDLQVFELISKYIDSRSLNWNHCVGFCTDGAASMTDRRSCLKSKIQEITKNTVVFTHCFIHREHLAAEKLSPGLHEILLQSAQILSFVKNSASDSKMLTVLCEEMGSELVNLPLSAELRWLSRGRILTRLFELRQEIEILLNQKHSDLARYFHDKEWVAKLAYLADMFSLINKLNSGLQGTMATLFNLYNKVDIFKRKLKAWLKRTQENDYDMFPLFSEFLDSSGVSVESITSMIVEHLQGLSQIFHDCYPPEEDLRLGNLWLIDPFASHQNNNLTDSEEEKLAALSSDTSLRSAYKSMSVTQFWVRAKTSHPELHEKAVKLLLPFSTFCLCDATFSALTASKQRNLLGFGPALRLAVTSLVPRIEKLVKEKE", "length": 1241, "header": "tr|A0A8C2N4R2-1|A0A8C2N4R2_CRIGR Isoform 1 of Zinc finger MYM-type protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zmym6 PE=4 SV=1 CANONICAL=A0A8C2N4R2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FA94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA94/entry", "sequence": { "sequence": "MKEPLDGECDKAMAQHGLLDKIKEEPDNAQEYGLQESELKISAVFSANDTSLGFQLGPLSPGSNTSFPSVPAAHVFCSGCKKLLHKTGCAQLFCSKECIIRYSSAVCLSPQPKRTCTHCSKDILNPMDVITTKVEDASSCKDFCSQLCLSSYELKKPVVTVYTSGVSTKCRMCQKVTDNLSQKPLYALGNSLKPFAEVNEITNDPGKTELFCSINCLSAYRIKTVISSGLQVLCHSCKTAAVPQYHVAMSDGTICSFCSSNCVLAFQNVFNKPEGTNSSLAPVSLGQEVINTPLQSTVSEGKGAPVSSFSGPISRPAADALETLAKQSQQIALTHSFMRLKCQHCNHLFARKPELLFYKGRMFLFCGKVCSEEYKRKNKVMALCDYCKIYKIIKDIVRFSGVDKPFCSEVCKSLSAQDFAERWANCCKMCSYCLQTSANFVESRLEGRLQVFCGEECMTKFTALFYQTAKCDGCKRQGKLSESLKWRGNIKYFCNLFCVLKFCHHYSVNDPVHKKSTFAPKVSISNYS", "length": 528, "header": "tr|A0A9J7FA94-1|A0A9J7FA94_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 6 isoform X7 OS=Cricetulus griseus OX=10029 GN=Zmym6 PE=4 SV=1 CANONICAL=A0A8C2N4R2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FAX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAX9/entry", "sequence": { "sequence": "MKEPLDGECDKAMAQHGLLDKIKEEPDNAQEYGLQESELKISAVFSANDTSLGFQLGPLSPGSNTSFPSVPAAHVFCSGCKKLLHKTGCAQLFCSKECIIRYSSAVCLSPQPKRTCTHCSKDILNPMDVITTKVEDASSCKDFCSQLCLSSYELKKPVVTVYTSGVSTKCRMCQKVTDNLSQKPLYALGNSLKPFAEVNEITNDPGKTELFCSINCLSAYRIKTVISSGLQVLCHSCKTAAVPQYHVAMSDGTICSFCSSNCVLAFQNVFNKPEGTNSSLAPVSLGQEVINTPLQSTVSEGKGAPVSSFSGPISRPAADALETLAKQSQQIALTHSFMRLKCQHCNHLFARKPELLFYKGRMFLFCGKVCSEEYKRKNKVMALCDYCKIYKIIKDIVRFSGVDKPFCSEVCKSLSAQDFAERWANCCKMCSYCLQTSANFVESRLEGRLQVFCGEECMTKFTALFYQTAKCDGCKRQGKLSESLKWRGNIKYFCNLFCVLKFCHHYSVNDPVHKKVLLLPKSVSVIIPKAQTALTALPSPRIATTPVITSVISLAKLPALQPTKNVNSDLTGAGPKEAAKIIGNGNALADAERLQSLPPPMLQKNKGILCRPVTQTKATSCRPHTHHVECQTDFPLQNEKNEEPDSPPAKKKRMDFFQTYDAEYIKFGFIICSGSKESSPRAQCVICGEILPRESVMPDQHTVCRH", "length": 706, "header": "tr|A0A9J7FAX9-1|A0A9J7FAX9_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 6 isoform X5 OS=Cricetulus griseus OX=10029 GN=Zmym6 PE=4 SV=1 CANONICAL=A0A8C2N4R2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FEE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEE7/entry", "sequence": { "sequence": "MKEPLDGECDKAMAQHGLLDKIKEEPDNAQEYGLQESELKISAVFSANDTSLGFQLGPLSPGSNTSFPSVPAAHVFCSGCKKLLHKTGCAQLFCSKECIIRYSSAVCLSPQPKRTCTHCSKDILNPMDVITTKVEDASSCKDFCSQLCLSSYELKKPVVTVYTSGVSTKCRMCQKVTDNLSQKPLYALGNSLKPFAEVNEITNDPGKTELFCSINCLSAYRIKTVISSGLQVLCHSCKTAAVPQYHVAMSDGTICSFCSSNCVLAFQNVFNKPEGTNSSLAPVSLGQEVINTPLQSTVSEGKGAPVSSFSGPISRPAADALETLAKQSQQIALTHSFMRLKCQHCNHLFARKPELLFYKGRMFLFCGKVCSEEYKRKNKVMALCDYCKIYKIIKDIVRFSGVDKPFCSEVCKSLSAQDFAERWANCCKMCSYCLQTSANFVESRLEGRLQVFCGEECMTKFTALFYQTAKCDGCKRQGKLSESLKWRGNIKYFCNLFCVLKFCHHYSVNDPVHKKVLLLPKSVSVIIPKAQTALTALPSPRIATTPVITSVISLAKLPALQPTKNVNSDLTGAGPKEAAKIIGNGNALADAERLQSLPPPMLQKNKGILCRPVTQTKATSCRPHTHHVECQTDFPLQNEKNEEPDSPPAKKKRMDFFQTYDAEYIKFGFIICSGSKESSPRAQCVICGEILPRESVMPTRPV", "length": 702, "header": "tr|A0A9J7FEE7-1|A0A9J7FEE7_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 6 isoform X6 OS=Cricetulus griseus OX=10029 GN=Zmym6 PE=4 SV=1 CANONICAL=A0A8C2N4R2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBV1/entry", "sequence": { "sequence": "MKEPLDGECDKAMAQHGLLDKIKEEPDNAQEYGLQESELKISAVFSANDTSLGFQLGPLSPGSNTSFPSVPAAHVFCSGCKKLLHKTGCAQLFCSKECIIRYSSAVCLSPQPKRTCTHCSKDILNPMDVITTKVEDASSCKDFCSQLCLSSYELKKPVVTVYTSGVSTKCRMCQKVTDNLSQKPLYALGNSLKPFAEVNEITNDPGKTELFCSINCLSAYRIKTVISSGLQVLCHSCKTAAVPQYHVAMSDGTICSFCSSNCVLAFQNVFNKPEGTNSSLAPVSLGQEVINTPLQSTVSEGKGAPVSSFSGPISRPAADALETLAKQSQQIALTHSFMRLKCQHCNHLFARKPELLFYKGRMFLFCGKVCSEEYKRKNKVMALCDYCKIYKIIKDIVRFSGVDKPFCSEVCKSLSAQDFAERWANCCKMCSYCLQTSANFVESRLEGRLQVFCGEECMTKFTALFYQAQTALTALPSPRIATTPVITSVISLAKLPALQPTKNVNSDLTGAGPKEAAKIIGNGNALADAERLQSLPPPMLQKNKGILCRPVTQTKATSCRPHTHHVECQTDFPLQNEKNEEPDSPPAKKKRMDFFQTYDAEYIKFGFIICSGSKESSPRAQCVICGEILPRESVMPVSLSNHLKAKHSELENKPVDFFEEKSLEMECQDSPLNKCLLVEESLVKASYLIAFQIAARKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNNTIECRINTLSADIEDQLVQKLRDSRWFALQIDESPETSDVTLLLCYVRFIDYDCDDVKEEFLFCTEMPSPSTDLQVFELISKYIDSRSLNWNHCVGFCTDGAASMTDRRSCLKSKIQEITKNTVVFTHCFIHREHLAAEKLSPGLHEILLQSAQILSFVKNSASDSKMLTVLCEEMGSELVNLPLSAELRWLSRGRILTRLFELRQEIEILLNQKHSDLARYFHDKEWVAKLAYLADMFSLINKLNSGLQGTMATLFNLYNKVDIFKRKLKAWLKRTQENDYDMFPLFSEFLDSSGVSVESITSMIVEHLQGLSQIFHDCYPPEEDLRLGNLWLIDPFASHQNNNLTDSEEEKLAALSSDTSLRSAYKSMSVTQFWVRAKTSHPELHEKAVKLLLPFSTFCLCDATFSALTASKQRNLLGFGPALRLAVTSLVPRIEKLVKEKE", "length": 1179, "header": "tr|A0A9J7JBV1-1|A0A9J7JBV1_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zmym6 PE=4 SV=1 CANONICAL=A0A8C2N4R2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX0/entry", "sequence": { "sequence": "MSDGTICSFCSSNCVLAFQNVFNKPEGTNSSLAPVSLGQEVINTPLQSTVSEGKGAPVSSFSGPISRPAADALETLAKQSQQIALTHSFMRLKCQHCNHLFARKPELLFYKGRMFLFCGKVCSEEYKRKNKVMALCDYCKIYKIIKDIVRFSGVDKPFCSEVCKSLSAQDFAERWANCCKMCSYCLQTSANFVESRLEGRLQVFCGEECMTKFTALFYQTAKCDGCKRQGKLSESLKWRGNIKYFCNLFCVLKFCHHYSVNDPVHKKVLLLPKSVSVIIPKAQTALTALPSPRIATTPVITSVISLAKLPALQPTKNVNSDLTGAGPKEAAKIIGNGNALADAERLQSLPPPMLQKNKGILCRPVTQTKATSCRPHTHHVECQTDFPLQNEKNEEPDSPPAKKKRMDFFQTYDAEYIKFGFIICSGSKESSPRAQCVICGEILPRESVMPVSLSNHLKAKHSELENKPVDFFEEKSLEMECQDSPLNKCLLVEESLVKASYLIAFQIAARKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNNTIECRINTLSADIEDQLVQKLRDSRWFALQIDESPETSDVTLLLCYVRFIDYDCDDVKEEFLFCTEMPSPSTDLQVFELISKYIDSRSLNWNHCVGFCTDGAASMTDRRSCLKSKIQEITKNTVVFTHCFIHREHLAAEKLSPGLHEILLQSAQILSFVKNSASDSKMLTVLCEEMGSELVNLPLSAELRWLSRGRILTRLFELRQEIEILLNQKHSDLARYFHDKEWVAKLAYLADMFSLINKLNSGLQGTMATLFNLYNKVDIFKRKLKAWLKRTQENDYDMFPLFSEFLDSSGVSVESITSMIVEHLQGLSQIFHDCYPPEEDLRLGNLWLIDPFASHQNNNLTDSEEEKLAALSSDTSLRSAYKSMSVTQFWVRAKTSHPELHEKAVKLLLPFSTFCLCDATFSALTASKQRNLLGFGPALRLAVTSLVPRIEKLVKEKE", "length": 993, "header": "tr|A0A9J7JDX0-1|A0A9J7JDX0_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 6 isoform X4 OS=Cricetulus griseus OX=10029 GN=Zmym6 PE=4 SV=1 CANONICAL=A0A8C2N4R2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4R2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4R2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766000", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AEF5-1", "protein_name": "Zinc finger MYM-type containing 6", "gene_name": "Zmym6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKEPLDGGCDKAMAQQGLLDRIKEEPDDAHEYGPQESELKISAVFSASDTSLGFQVGLPSPGLSASFPAVPAAQVFCFGCKQLLRKGQPTYRKAGSAQLFCSMGCVITFSSAVCVPPLPKRTCAHCSKDILNPMDVITTQFENSSLCKEFCSQSCLFSYELKKPVVTIYTSGISAKCSMCQKGTDNLAPKPLYALGNSSRLSAEMIETTNDSGRTELFCSINCLSAYRIKTVISSGIQVLCHSCKTAAVPQYHLAMSNGTICSFCSSNCVLAFQNVFNKPKGRNSSLAPISQGQEVLSAPMQSAVSARKEAPAPSFSSPISNPAAAALETLAKESHQIALTLSFLKLTCLQCSLLFATKPELLFYKGRMFMFCGKACCDEYKRQNKVKALCDYCKLQKTIEDTVRFSGVDKPFCSEVCKVLSARDFGERWGNYCKTCSYCLQTSANFVENQLEGKLQVFCCEDCMSKFTALLYQTARCDACKRQGKLSESLKWRGNIKYFCNLFCVLKFCHQYSANDPIPQRKVFVLPKPAQVIIPKVQTAMTALPSPKIATTPVITSVTSLAKIPALQPSRNTNSVCTDAGPTEATKIIGNGSKPAAAERLQSPQAPKLLKNKGILCKPVTQTKATSCRPHTHHVACQTDSPLPDGKNEEYDSPPAKRRRVDFFHTCNADYIKFGFIICSGSKESSPSPQCVICGEILPSESVMPVSLSNHLKAKHSDLENKPIDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNSTIGCRIKKLSEDIEDQLLQKVRESRWFALQVDESSEVTDVPLLLCYVRFVDYDCGDVKEELLFCTEMPSPSTDLKVFELINQYIDSRSLHWNHCVGFCTDGAASLTDECSHLRSKIQEIAKNTVTFTHCFIHREHLAAEKLSPCLHEILLQLSQILSFVKNSASDSRMLTILCEEVGSGHVSLPLSAEVRWLARGRILTRLFELRHEIEIFLNQKHSDLARYFHDEEWVAKLAYLADIFSLINKLNSSLQGTMTTFFSLYNKVEIFKKRLKMWLKRAQENDYDMFPLFSEFLDSSDVSVRNIASIICEHLEGLSQVFHDCYPPEKDLRSGNLWLLNPFASYQDNNLTDSEEENLAALSSDTRFQSVHKSMSVTQFWVNAKTSYPELHEKAMKLLLPFSSTCLCDAAFSALTASKQRDLRTYSPSLRLAVTSLVPRIDKLAKEKD", "length": 1249 }, "evidence": [ { "id": "A0A8C2N4R2", "url": "https://omabrowser.org/oma/group/A0A8C2N4R2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MF92-1", "protein_name": "Zinc finger MYM-type containing 4", "gene_name": "ZMYM6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEREVESGPRKRVGEFEQKTGAVFDEIVENCGGIMDTEMSEDIDHNLTPTLDSMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVGSDNEDEQDFSSKDNLVSSIHTDDSLEVERRVTQHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFSLVRENSKETFSGKEKNRDLTYHEREKRLDKPHKELDSRLKSSFFDKAANQVEETLHTHLPQTPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAMAPQQGLLDRIKDEPDNAQEYSHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASSGMNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARPPPPPTKKTCSSCSKDILNPKDVISAQFENTTTSKDFCSQSCLSTYELKRKPVVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHMLQIEGQSKKFCSSTCVTAYKQKSAKITPCALCKSLRSSAEMIENTNSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPAGMNSSVVPLSQGQVIVSIPTGSTVSAGGGNTSAVSPTSISSSAAAGLQRLAAQSQHVGFARSVVKLKCQHCNRLFATKPELLDYKGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIIKETVRFSGADKSFCSEGCKLLYKHDLAKRWGNHCKMCSYCLQTSPKLVQNNLGGKVEEFCCEECMSKYTVLLCQMAKCDGCKRQGKLSESLKWRGEMKHFCNLLCILMFCNQQSMCDPPSQNNAASISMVPAASAGPPSLRKDSTPVIANVVSLASAPAAQPTVNSNSVLQGAVPTVTAKIIGDASTQTDVLKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTEDTPAQPQIIAVPVPVPVFVPVPLHLYTQYAPVPFGIPVPMPVPMLIPSSMGNEDKVTESIEDIKEKLPSHPFEADLLEMAEMIAEDEEKEKTLSQGESQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNTVQEADLEVKQFSKGETEQDLEADFPSESFDPLNKGQGIQVRSRTRRRHRDGFPQPRRRGRKKSIVSVEPRSLIQGAFQGCSVSGMTLKYMYGVNAWRNWVQWKNAKEEQGDLKCGGVEHASSSPCSDPLGSTQEHALSQESSEPGCKVRSIKLKEDILSCTFAELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLRNVTEHLQLSFAHVMRRTRTLKYSTKMTYLRFFPPSQKQESEPDKLTIGKRKRNEDDDVPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDVELSD", "length": 1553 }, "evidence": [ { "id": "A0A8C2N4R2", "url": "https://omabrowser.org/oma/group/A0A8C2N4R2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O95789-3", "protein_name": "Zinc finger MYM-type protein 6", "gene_name": "ZMYM6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKEPLDGECGKAVVPQQELLDKIKEEPDNAQEYGCVQQPKTQESKLKIGGVSSVNERPIAQQLNPGFQLSFASSGPSVLLPSVPAVAIKVFCSGCKKMLYKGQTAYHKTGSTQLFCSTRCITRHSSPACLPPPPKKTCTNCSKDILNPKDVITTRFENSYPSKDFCSQSCLSSYELKKKPVVTIYTKSISTKCSMCQKNADTRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCENCGSYCYSSSGPCQSQKVFSSTSVTAYKQNSAQIPPYALGKSLRPSAEMIETTNDSGKTELFCSINCLSAYRVKTVTSSGVQVSCHSCKTSAIPQYHLAMSNGTIYSFCSSSCVVAFQNVFSKPKGTNSSAVPLSQGQVVVSPPSSRSAVSIGGGNTSAVSPSSIRGSAAASLQPLAEQSQQVALTHTVVKLKCQHCNHLFATKPELLFYKGKMFLFCGKNCSDEYKKKNKVVAMCDYCKLQKIIKETVRFSGVDKPFCSEVCKFLSARDFGERWGNYCKMCSYCSQTSPNLVENRLEGKLEEFCCEDCMSKFTVLFYQMAKCDGCKRQGKLSESIKWRGNIKHFCNLFCVLEFCHQQIMNDCLPQNKVNISKAKTAVTELPSARTDTTPVITSVMSLAKIPATLSTGNTNSVLKGAVTKEAAKIIQDESTQEDAMKFPSSQSSQPSRLLKNKGISCKPVTQTKATSCKPHTQHKECQTDLPMPNEKNDAELDSPPSKKKRLGFFQTYDTEYLKVGFIICPGSKESSPRPQCVICGEILSSENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSSLKKCLLVEKSLVKASYLIAFQTAASKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNVTIQHRIDELSADIEDQLIQKVRESKWFALQIDESSEISNITLLLCYIRFIDYDCRDVKEELLFCIEMPTQITGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRYSGLKAKIQEVAMNTAAFTHCFIHRERLVAEKLSPCLHKILLQSAQILSFIKSNALNSRMLTILCEEMGSEHVSLPLHAEVRWISRGRMLKRLFELRHEIEIFLSQKHSDLAKYFHDEEWVGKLAYLSDIFSLINELNLSLQGTLTTFFNLCNKIDVFKRKLKMWLKRTQENDYDMFPSFSEFSNSSGLNMTDITRIIFEHLEGLSQVFSDCFPPEQDLRSGNLWIIHPFMNHQNNNLTDFEEEKLTELSSDLGLQALFKSVSVTQFWINAKTSYPELHERAMKFLLPFSTVYLCDAAFSALTESKQKNLLGSGPALRLAVTSLIPRIEKLVKEKE", "length": 1325 }, "evidence": [ { "id": "A0A8C2N4R2", "url": "https://omabrowser.org/oma/group/A0A8C2N4R2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4R2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4R2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1142, "end_pos": 1144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" }, { "start_pos": 796, "end_pos": 798, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N4R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R2" }, { "id": "SM00746", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRASH", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 156, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1142, "end_pos": 1144 }, { "start_pos": 179, "end_pos": 181 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 64, "end_pos": 66 }, { "start_pos": 796, "end_pos": 798 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N4R6-1", "uniprot_ac": "A0A8C2N4R6", "uniprot_id": "A0A8C2N4R6_CRIGR", "mass": { "chemical_mass": 32085.0, "monoisotopic_mass": 32085.0 }, "refseq": { "ac": "XP_003497903", "name": "GTP-binding protein 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497903" }, "gene_names": [ { "name": "Gtpbp8", "type": "recommended", "evidence": [ { "id": "A0A8C2N4R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6" } ] }, { "name": "Gtpbp8", "type": "synonym", "evidence": [ { "id": "XP_003497903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497903" } ] } ], "protein_names": [ { "name": "GTP-binding protein 8", "type": "recommended", "evidence": [ { "id": "A0A8C2N4R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6/entry#names_and_taxonomy" } ] }, { "name": "GTP-binding protein 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003497903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497903" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 51 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613667.1) and transcript sequence (IACG01032465.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003497903.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497903" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gtpbp8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6", "locus": {} } ], "crossref": [ { "id": "cd01876", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01876", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766372", "url": "https://www.ncbi.nlm.nih.gov/gene/100766372", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019987", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019987", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766372", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766372", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N4R6", "url": "https://www.orthodb.org/?gene=A0A8C2N4R6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46498", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46498", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46498:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46498:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497903", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N4R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N4R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATGQWRRMGRLFEMAPALRRCPRVYSTSPAFAEVLRLPQKQLTKVLYPLRELAQHLVTDSGSGLIEQGLFDPSLEDIARAESIFEATARNRIEYLSSAVRLDHAPGLQQPEVCFIGRSNVGKSSLIKALFSMAPDVEVRISKKPGHTKKMNFFKVGKYFTLVDMPGYGYRAPEDFVDMVETYLKERKNLKRTFLLVDSVVGITKLDNIAVEMCEEFALPYVMVLTKIDKSSKGYLLKQVLQIQKFVNTQTQGCFPQLFPISAVTYSGVHLLKCFIADITGSLK", "length": 285, "header": "tr|A0A8C2N4R6-1|A0A8C2N4R6_CRIGR Isoform 1 of GTP-binding protein 8 OS=Cricetulus griseus OX=10029 GN=Gtpbp8 PE=3 SV=1 CANONICAL=A0A8C2N4R6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N4R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6/entry", "sequence": { "sequence": "MAATGQWRRMGRLFEMAPALRRCPRVYSTSPAFAEVLRLPQKQLTKVLYPLRELAQHLVTDSGSGLIEQGLFDPSLEDIARAESIFEATARNRIEYLSSAVRLDHAPGLQQPEVCFIGRSNVGKSSLIKALFSMAPDVEVRISKKPGHTKKMNFFKVGKYFTLVDMPGYGYRAPEDFVDMVETYLKERKNLKRTFLLVDSVVGITKLDNIAVEMCEEFALPYVMVLTKIDKSSKGYLLKQVLQIQKFVNTQTQGCFPQLFPISAVTYSGVHLLKCFIADITGSLK", "length": 285, "header": "tr|A0A8C2N4R6-1|A0A8C2N4R6_CRIGR Isoform 1 of GTP-binding protein 8 OS=Cricetulus griseus OX=10029 GN=Gtpbp8 PE=3 SV=1 CANONICAL=A0A8C2N4R6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUD3/entry", "sequence": { "sequence": "MAATGQWRRMGRLFEMAPALRRCPRVYSTSPAFAEVLRLPQKQLTKVLYPLRELAQHLVTDSGSGLIEQGLFDPSLEDIARAESIFEATARNRIEYLSSAVRLDHAPGLQQPEVCFIGRSNVGKSSLIKALFSMAPDVEVRISKKPGHTKKMNFFKVGKYFTLVDMPGYGYRAPEDFVDMVETYLKERKNLKRTFLLVDSVVGITKLDNIAVEMCEEFALPYVFLNSWRWRERDSKNMCVHMHRLYVDTHEGQQRATDSLKLELQEVASHPLRSAGNRTQAL", "length": 282, "header": "tr|A0A9J7FUD3-1|A0A9J7FUD3_CRIGR Computationally mapped isoform of GTP-binding protein 8 OS=Cricetulus griseus OX=10029 GN=Gtpbp8 PE=3 SV=1 CANONICAL=A0A8C2N4R6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUF3/entry", "sequence": { "sequence": "MAATGQWRRMGRLFEMAPALRRCPRVYSTSPAFAEVLRLPQKQLTKVLYPLRELAQHLVTDSGSGLIEQGLFDPSLEDIARAESIFEATARNRIEYLSSAVRLDHAPGLQQPEVCFIGRSNVGKSSLIKALFSMAPDVEVRISKKPGHTKKMNFFKVGKYFTLVDMPGYGYRAPEDFVDMVETYLKERKNLKRTFLLVDSVVGITKLDNIAVEMCEEFALPYVMVLTKIDKSSKGYLLKQVLQIQKFVNTQTQGCFPQLFPIRRTL", "length": 266, "header": "tr|A0A9J7FUF3-1|A0A9J7FUF3_CRIGR Computationally mapped isoform of GTP-binding protein 8 OS=Cricetulus griseus OX=10029 GN=Gtpbp8 PE=3 SV=1 CANONICAL=A0A8C2N4R6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV6/entry", "sequence": { "sequence": "MAATGQWRRMGRLFEMAPALRRCPRVYSTSPAFAEVLRLPQKQLTKVLYPLRELAQHLVTDSGSGLIEQGLFDPSLEDIARAESIFEATARNRIEYLSSAVRLDHAPGLQQPEVCFIGRSNVGKSSLIKALFSMAPDVEVRISKKPGHTKKMNFFKVGKYFTLVDMPGYGYRAPEDFVDMVETYLKERKNLKRTFLLVDSVVGITKLDNIAVEMCEEFALPYVMVLTKIDKSSKGYLLKQVLQIQKFVNTQTQGCFPQLFPISLAQP", "length": 267, "header": "tr|A0A9J7JKV6-1|A0A9J7JKV6_CRIGR Computationally mapped isoform of GTP-binding protein 8 OS=Cricetulus griseus OX=10029 GN=Gtpbp8 PE=3 SV=1 CANONICAL=A0A8C2N4R6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N4R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N4R6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304950", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304950" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5M1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5M1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gimap5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5M1", "locus": {} } ], "crossref": [ { "id": "cd01852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771673", "url": "https://www.ncbi.nlm.nih.gov/gene/100771673", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771673", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771673", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N5M1", "url": "https://www.orthodb.org/?gene=A0A8C2N5M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04548", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04548", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304950", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304950", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N5M1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N5M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5M1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METLQIVVKGRKKDGCTPGSPPLRILLVGKSGCGKSATGNSILCRQAFESRLRAQSVTRTSKAEMGTWKGRSFLVVDTPPIFESEAQNQDKDIADCYLLCAPGPHVLLLVTQLGRFTAQDTIAVRRVKEIFGAGVMRHMILLFTHKEDLANETLDEFVTHTDNHSLRSLVQECGKRYCAFNNRASGEEQQGQLAELMAQVRALEQECEGSFHSNDLFLHAQELLSGNNSERQEAYRCYLAKVRQEVARQKRELEEQEGSWVLKVLLRGTEWMAVHAGTCASFVLSVLIFLVIFLLICFNV", "length": 300, "header": "tr|A0A8C2N5M1-1|A0A8C2N5M1_CRIGR Isoform 1 of GTPase IMAP family member 5 OS=Cricetulus griseus OX=10029 GN=Gimap5 PE=3 SV=1 CANONICAL=A0A8C2N5M1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N5M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5M1/entry", "sequence": { "sequence": "METLQIVVKGRKKDGCTPGSPPLRILLVGKSGCGKSATGNSILCRQAFESRLRAQSVTRTSKAEMGTWKGRSFLVVDTPPIFESEAQNQDKDIADCYLLCAPGPHVLLLVTQLGRFTAQDTIAVRRVKEIFGAGVMRHMILLFTHKEDLANETLDEFVTHTDNHSLRSLVQECGKRYCAFNNRASGEEQQGQLAELMAQVRALEQECEGSFHSNDLFLHAQELLSGNNSERQEAYRCYLAKVRQEVARQKRELEEQEGSWVLKVLLRGTEWMAVHAGTCASFVLSVLIFLVIFLLICFNV", "length": 300, "header": "tr|A0A8C2N5M1-1|A0A8C2N5M1_CRIGR Isoform 1 of GTPase IMAP family member 5 OS=Cricetulus griseus OX=10029 GN=Gimap5 PE=3 SV=1 CANONICAL=A0A8C2N5M1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N5R6-1", "uniprot_ac": "A0A8C2N5R6", "uniprot_id": "A0A8C2N5R6_CRIGR", "mass": { "chemical_mass": 62048.0, "monoisotopic_mass": 62048.0 }, "refseq": { "ac": "XP_003496253", "name": "DEP domain-containing protein 1B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496253" }, "gene_names": [ { "name": "Depdc1b", "type": "recommended", "evidence": [ { "id": "A0A8C2N5R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6" } ] }, { "name": "Depdc1b", "type": "synonym", "evidence": [ { "id": "XP_003496253", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496253" } ] } ], "protein_names": [ { "name": "DEP domain-containing protein 1B", "type": "recommended", "evidence": [ { "id": "A0A8C2N5R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6/entry#names_and_taxonomy" } ] }, { "name": "DEP domain-containing protein 1B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003496253", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496253" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613614.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496253" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Depdc1b", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6", "locus": {} } ], "crossref": [ { "id": "cd04405", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04405", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754645", "url": "https://www.ncbi.nlm.nih.gov/gene/100754645", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754645", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754645", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KPHLMFF", "url": "https://omabrowser.org/oma/group/KPHLMFF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N5R6", "url": "https://www.orthodb.org/?gene=A0A8C2N5R6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16206:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16206:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00610", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00610", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27581", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27581", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496253", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N5R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N5R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHRIVGPGPYRATKLWNETVELFRTRMPLRKHRCRFKTYEHCFTAAEAVDWLHELLRNSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKKPLYQRDVIKFPEWNDPPPGTSQENIPVRPIVMNSEMWFKRHSIAIGEVPACRLVYRRQLTEANVEEIWKSTTLSHLQKILGLDSLEEVLNVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDWKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQIKYPGADMDVTLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVIADAKLSNKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKPKPKPQLFMWALRKPFQPFQRTRSFRM", "length": 529, "header": "tr|A0A8C2N5R6-1|A0A8C2N5R6_CRIGR Isoform 1 of DEP domain-containing protein 1B OS=Cricetulus griseus OX=10029 GN=Depdc1b PE=4 SV=1 CANONICAL=A0A8C2N5R6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N5R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6/entry", "sequence": { "sequence": "MEHRIVGPGPYRATKLWNETVELFRTRMPLRKHRCRFKTYEHCFTAAEAVDWLHELLRNSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKKPLYQRDVIKFPEWNDPPPGTSQENIPVRPIVMNSEMWFKRHSIAIGEVPACRLVYRRQLTEANVEEIWKSTTLSHLQKILGLDSLEEVLNVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDWKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQIKYPGADMDVTLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVIADAKLSNKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKPKPKPQLFMWALRKPFQPFQRTRSFRM", "length": 529, "header": "tr|A0A8C2N5R6-1|A0A8C2N5R6_CRIGR Isoform 1 of DEP domain-containing protein 1B OS=Cricetulus griseus OX=10029 GN=Depdc1b PE=4 SV=1 CANONICAL=A0A8C2N5R6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GSZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSZ9/entry", "sequence": { "sequence": "MPLRKHRCRFKTYEHCFTAAEAVDWLHELLRNSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKKPLYQRDVIKFPEWNDPPPGTSQENIPVRPIVMNSEMWFKRHSIAIGEVPACRLVYRRQLTEANVEEIWKSTTLSHLQKILGLDSLEEVLNVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDWKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQIKYPGADMDVTLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVIADAKLSNKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKPKPKPQLFMWALRKPFQPFQRTRSFRM", "length": 502, "header": "tr|A0A9J7GSZ9-1|A0A9J7GSZ9_CRIGR Computationally mapped isoform of DEP domain-containing protein 1B OS=Cricetulus griseus OX=10029 GN=Depdc1b PE=4 SV=1 CANONICAL=A0A8C2N5R6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5R6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754645", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754645", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TPC7-1", "protein_name": "DEP domain-containing protein 1B", "gene_name": "DEPDC1B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSSELSLKEKGRTDFSRKWNETVELFRAKMPLRKHRCRFKSYEHCFTATEAVDWLHELLRRSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKRPPYQKDVIEFPKWDDPPPGTSQENIPVRPLVMNPEMWYKRHSIAIGEVPACRLVHRRQVTEANVEEIWKSMTLSYLQKILGLDSLEEVLDIKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSHCILCSKDEVDLDDLLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLQRVQIKYPGADMDITLSAPSFCRQISPEEFEFQRAYGSQEPLAALLEEVITDAKLSSKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKPKAKPQLLMWALKNPFQPFQRTRSFRM", "length": 532 }, "evidence": [ { "id": "A0A8C2N5R6", "url": "https://omabrowser.org/oma/group/A0A8C2N5R6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4AA32-1", "protein_name": "DEP domain-containing protein 1B", "gene_name": "Depdc1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEHRIVGPGPYRATRLWNETVELFRARMPLRKHRCRFKSYEHCFTASEAVDWLHELLRNSQNFGPEVTRKQTVQLLRKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKKPLYQRDVIKFPEWNDPPPGTSQENIPVRPIVMNSEMWFKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSTTLSHLQRILGLDSLEEVLNTKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCTDWKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLPKEQMATEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLVLQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVIVDDKLSNKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKPKAKPQLFMWALRKPFQPFQRTRSFRM", "length": 529 }, "evidence": [ { "id": "A0A8C2N5R6", "url": "https://omabrowser.org/oma/group/A0A8C2N5R6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BH88-1", "protein_name": "DEP domain-containing protein 1B", "gene_name": "Depdc1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEHRVVGPGPYRATRLWNETVELFRARMPLRRHRCRFKSYEHCFTASEAVDWLHELLRNSQNFGPEVTRKQTVQLLGKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKKPLYQRDVIKFPEWNDPPPGTSQENIPVRPIVMNSEMWFKRHSIAIGEVPACRLVHRRQLTEANVEEIWKSTTLSYLQKILGLDSLEEVLNTKLVSSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCTDWKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLPKEKTAIEAFQLCCLLLPPENRRKLQLLMRMMARICLNKEMPPLSDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVIADDKLSSKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKPKAKPQLFMWALRKPFQPFQRTRSFRM", "length": 529 }, "evidence": [ { "id": "A0A8C2N5R6", "url": "https://omabrowser.org/oma/group/A0A8C2N5R6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WUY9-1", "protein_name": "DEP domain-containing protein 1B", "gene_name": "DEPDC1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPPNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRSYGSQEPLAALLEEVITDAKLSNKEKKKKLKQFQKSYPEVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM", "length": 529 }, "evidence": [ { "id": "A0A8C2N5R6", "url": "https://omabrowser.org/oma/group/A0A8C2N5R6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5R6", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278010", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278010" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N613", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bmf", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613", "locus": {} } ], "crossref": [ { "id": "100761166", "url": "https://www.ncbi.nlm.nih.gov/gene/100761166", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761166", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761166", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N613", "url": "https://www.orthodb.org/?gene=A0A8C2N613", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32014", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32014", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32014:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32014:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15185", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15185", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278010", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278010", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N613", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N613-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAU0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGAGVFWKQYREVRRGLLPRQLAPAAATAPARATASCRSPLEFAPSFPIECGRQAPRVLITLDPGAEPWHHDSEAETLSWSHPGEMEPPQCVEELEDDVFQPEDGEPGTQPGSLLSADLFAQSQLDCPLSRLQLFPLTHCCGPGLRPISQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAGLPLGEQPPEGQWQHRAEVQIARKLQCIADQFHRLHIQQHQQNRDRAWWQVFLFLQNLALNREENREGVGPW", "length": 270, "header": "tr|A0A8C2N613-1|A0A8C2N613_CRIGR Isoform 1 of Bcl-2-modifying factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Bmf PE=4 SV=1 CANONICAL=A0A8C2N613-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N613-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613/entry", "sequence": { "sequence": "MPGAGVFWKQYREVRRGLLPRQLAPAAATAPARATASCRSPLEFAPSFPIECGRQAPRVLITLDPGAEPWHHDSEAETLSWSHPGEMEPPQCVEELEDDVFQPEDGEPGTQPGSLLSADLFAQSQLDCPLSRLQLFPLTHCCGPGLRPISQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAGLPLGEQPPEGQWQHRAEVQIARKLQCIADQFHRLHIQQHQQNRDRAWWQVFLFLQNLALNREENREGVGPW", "length": 270, "header": "tr|A0A8C2N613-1|A0A8C2N613_CRIGR Isoform 1 of Bcl-2-modifying factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Bmf PE=4 SV=1 CANONICAL=A0A8C2N613-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAU0/entry", "sequence": { "sequence": "MEPPQCVEELEDDVFQPEDGEPGTQPGSLLSADLFAQSQLDCPLSRLQLFPLTHCCGPGLRPISQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYAPAEPRPCMVAGLPLPAKPGLEQRRKQGRGGSLVRLGGPCWMKHQECRLEQDRHLGGQTLSCPVLLF", "length": 164, "header": "tr|A0A9J7KAU0-1|A0A9J7KAU0_CRIGR Computationally mapped isoform of Bcl-2-modifying factor isoform X3 OS=Cricetulus griseus OX=10029 GN=Bmf PE=4 SV=1 CANONICAL=A0A8C2N613-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N613", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761166", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761166", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N613", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N613", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613" } ], "pmid": "" }, { "name": "negative regulation of autophagy", "id": "GO:0010507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010507", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N613", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "myosin complex", "id": "GO:0016459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016459", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N613", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N613" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"XP_007642686", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642686" } ] } ], "protein_names": [ { "name": "Clathrin heavy chain linker domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A8C2N620", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620/entry#names_and_taxonomy" } ] }, { "name": "clathrin heavy chain linker domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007642686", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642686" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614016.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642686", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642686" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N620", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Clhc1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620", "locus": {} } ], "crossref": [ { "id": "100764559", "url": "https://www.ncbi.nlm.nih.gov/gene/100764559", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764559", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764559", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IGTMNKF", "url": "https://omabrowser.org/oma/group/IGTMNKF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N620", "url": "https://www.orthodb.org/?gene=A0A8C2N620", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F0J9", "url": "https://www.orthodb.org/?gene=A0A9J7F0J9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10292:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10292:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13838", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13838", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15739", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15739", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642686", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642686", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N620", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N620-1", "url": 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"MSFQEVNKHAVLPPIISRSDKEFLESMQRYIITETKRVGCNEKGPADEYYTIYRNVFDKVIDYVSAYKVILTSIKKEYDAFIETIKKGRKTAFYLHGKLKVLAAEPTALVYHQRRAIQLEAKVRIIENNSTKIQLQIDQMKQMRAEYDKEEVKLCASNRQLWRPIPGMTLQESVSLEALNKYKQHLEDKYIKRKQDLTTEYVSAQKKVELDEEMTVLLKRRDIAESLNRDLQFRHQRMQVISHTLTTWLKHNMRIPFQDVVEIIRNTKAVYVDETIVDELFEDDPSKTKEAIIMLYYIERFNELISNGEYEKAACFAANSPRRILQNIGTMNKFKAVGKIRGKPLPLLLFFEAIFSRSHAFKRPVNADLTLEGIKCGLSEKRLDLVTHWVTQEKLTFSEKAGDVIVAYGEQNTYYKPRCLALAQIIYNECHLHKKALLCLCKQGRIHEAVEHIQQFKDFTSDDLIMLITVCPHIELIKCLTQERYGKPPIFSFVLTVLHVFSADMKKVGIKLLQEVSKGGKDLIEHLVMGDSFCSFEKWQEMANICLQNGFENLFNDIMSVLRSQAGVSEISEDDSFYLMEHVFW", "length": 585, "header": "tr|A0A8C2N620-1|A0A8C2N620_CRIGR Isoform 1 of Clathrin heavy chain linker domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Clhc1 PE=4 SV=1 CANONICAL=A0A8C2N620-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N620-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620/entry", "sequence": { "sequence": "MSFQEVNKHAVLPPIISRSDKEFLESMQRYIITETKRVGCNEKGPADEYYTIYRNVFDKVIDYVSAYKVILTSIKKEYDAFIETIKKGRKTAFYLHGKLKVLAAEPTALVYHQRRAIQLEAKVRIIENNSTKIQLQIDQMKQMRAEYDKEEVKLCASNRQLWRPIPGMTLQESVSLEALNKYKQHLEDKYIKRKQDLTTEYVSAQKKVELDEEMTVLLKRRDIAESLNRDLQFRHQRMQVISHTLTTWLKHNMRIPFQDVVEIIRNTKAVYVDETIVDELFEDDPSKTKEAIIMLYYIERFNELISNGEYEKAACFAANSPRRILQNIGTMNKFKAVGKIRGKPLPLLLFFEAIFSRSHAFKRPVNADLTLEGIKCGLSEKRLDLVTHWVTQEKLTFSEKAGDVIVAYGEQNTYYKPRCLALAQIIYNECHLHKKALLCLCKQGRIHEAVEHIQQFKDFTSDDLIMLITVCPHIELIKCLTQERYGKPPIFSFVLTVLHVFSADMKKVGIKLLQEVSKGGKDLIEHLVMGDSFCSFEKWQEMANICLQNGFENLFNDIMSVLRSQAGVSEISEDDSFYLMEHVFW", "length": 585, "header": "tr|A0A8C2N620-1|A0A8C2N620_CRIGR Isoform 1 of Clathrin heavy chain linker domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Clhc1 PE=4 SV=1 CANONICAL=A0A8C2N620-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0J9/entry", "sequence": { "sequence": "MSITPYTEMFSTRVRIIENNSTKIQLQIDQMKQMRAEYDKEEVKLCASNRQLWRPIPGMTLQESVSLEALNKYKQHLEDKYIKRKQDLTTEYVSAQKKVELDEEMTVLLKRRDIAESLNRDLQFRHQRMQVISHTLTTWLKHNMRIPFQDVVEIIRNTKAVYVDETIVDELFEDDPSKTKEAIIMLYYIERFNELISNGEYEKAACFAANSPRRILQNIGTMNKFKAVGKIRGKPLPLLLFFEAIFSRSHAFKRPVNADLTLEGIKCGLSEKRLDLVTHWVTQEKLTFSEKAGDVIVAYGEQNTYYKPRCLALAQIIYNECHLHKKALLCLCKQGRIHEAVEHIQQFKDFTSDDLIMLITVCPHIELIKCLTQERYGKPPIFSFVLTVLHVFSADMKKVGIKLLQEVSKGGKDLIEHLVMGDSFCSFEKWQEMANICLQNGFENLFNDIMSVLRSQAGVSEISEDDSFYLMEHVFW", "length": 476, "header": "tr|A0A9J7F0J9-1|A0A9J7F0J9_CRIGR Computationally mapped isoform of Clathrin heavy chain linker domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Clhc1 PE=4 SV=1 CANONICAL=A0A8C2N620-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDJ0/entry", "sequence": { "sequence": "MSFQEVNKHAVLPPIISRSDKEFLESMQRYIITETKRVGCNEKGPADEYYTIYRNVFDKVIDYVSAYKVILTSIKKEYDAFIETIKKGRKTAFYLHGKLKVLAAEPTALVYHQRRAIQLEAKVRIIENNSTKIQLQIDQMKQMRAEYDKEEVKLCASNRQLWRPIPGMTLQESVSLEALNKYKQHLEDKYIKRKQDLTTEYVSAQKKVELDEEMTVLLKRRDIAESLNRDLQFRHQRMQVISHTLTTWLKHNMRIPFQDVVEIIRNTKAVYVDETIVDELFEDDPSKTKEAIIMLYYIERFNELISNGEYEKAACFAANSPRRILQNIGTMNKFKAVGKIRGKPLPLLLFFEAIFSRSHAFKRPVNADLTLEGIKCGLSEKRLDLVTHWVTQEKLTFSEKAGDVIVAYGEQNTYYKPRCLALAQIIYNECHLHKKALLCLCKQGRIHEAVEHIQQFKDFTSDLIEHLVMGDSFCSFEKWQEMANICLQNGFENLFNDIMSVLRSQAGVSEISEDDSFYLMEHVFW", "length": 525, "header": "tr|A0A9J7HDJ0-1|A0A9J7HDJ0_CRIGR Computationally mapped isoform of Clathrin heavy chain linker domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Clhc1 PE=4 SV=1 CANONICAL=A0A8C2N620-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KF03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF03/entry", "sequence": { "sequence": "MASVSLVLGLKVIDYVSAYKVILTSIKKEYDAFIETIKKGRKTAFYLHGKLKVLAAEPTALVYHQRRAIQLEAKVRIIENNSTKIQLQIDQMKQMRAEYDKEEVKLCASNRQLWRPIPGMTLQESVSLEALNKYKQHLEDKYIKRKQDLTTEYVSAQKKVELDEEMTVLLKRRDIAESLNRDLQFRHQRMQVISHTLTTWLKHNMRIPFQDVVEIIRNTKAVYVDETIVDELFEDDPSKTKEAIIMLYYIERFNELISNGEYEKAACFAANSPRRILQNIGTMNKFKAVGKIRGKPLPLLLFFEAIFSRSHAFKRPVNADLTLEGIKCGLSEKRLDLVTHWVTQEKLTFSEKAGDVIVAYGEQNTYYKPRCLALAQIIYNECHLHKKALLCLCKQGRIHEAVEHIQQFKDFTSDDLIMLITVCPHIELIKCLTQERYGKPPIFSFVLTVLHVFSADMKKVGIKLLQEVSKGGKDLIEHLVMGDSFCSFEKWQEMANICLQNGFENLFNDIMSVLRSQAGVSEISEDDSFYLMEHVFW", "length": 537, "header": "tr|A0A9J7KF03-1|A0A9J7KF03_CRIGR Computationally mapped isoform of Clathrin heavy chain linker domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Clhc1 PE=4 SV=1 CANONICAL=A0A8C2N620-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N620", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N620", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764559", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764559", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5XIR8-1", "protein_name": "Clathrin heavy chain linker domain-containing protein 1", "gene_name": "Clhc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTQEVKKHAVLPPIISRNDKEFLESMQRYIITETKRVGCNEEGPPDEYYTIYRNVFDKVIDYVNAYKSVLTSIKKEYDAFIETVKKGRRNAFYLHGKLKVLAAEPTALVYHQRRTIQLEAKMRIIDNNSKAIQLQIDQMKQLRMEYENTEVKLCASSKQLWKPIPGMTLQDSVNLDALNNHKQNLEDKCRKLKQDMSTMYVSAQKKADLDEEMIVLLKRRDIAENLNKDLRFRHQRLQVISHTLNSWMKQNMRIPFKDVLERIQQTKAIYGHAKVVDELFEDDPNKTKEAIVMLYYIERFHELISLGEYEKAACFAANSPKRILQNAGTMNKFKAIGKVRGKPLPLLLFFEAIFNTSQAFKRAINVDLTLEGIKCGLSEERLDLVTHWVTQAKLTFSEKVGDAICAYGEQHPYHKSKCLALAQIVYNECGLHKKAILCLCRQGQFHEAMEHIQQSKDINTDDLIQLITACPQIDLIRGLTEERNGKPPFLSFGLTVLHLFSVDMKKIGMKLLQEVSKAEKDVIEHLVMSDLFCSIEKWQELANICLQNGFKNLSNDIMSILRSQAGVSEISEDDTTNVMEHVFW", "length": 585 }, "evidence": [ { "id": "A0A8C2N620", "url": "https://omabrowser.org/oma/group/A0A8C2N620/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NHS4-1", "protein_name": "Clathrin heavy chain linker domain-containing protein 1", "gene_name": "CLHC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVHQIRKHAVLPPIICRSDKEFLESVQRYIITETERLGCSEEGPADEYYIIYRNVFDKVIEHITAYKSILTSIKKEYDAFIETIKKDRRTTFCLHGKLKGLAAEPTALVYYRKRTIQLEAKMRIIESNSSKIQSQIDHIKQCRAEYDTKEVKYCTFSKDPSKPIPGMTLQESMNLDALTKYMKHLEDKYAEIKQAMLIKYVPAQRKADLDEEMIVLLKRRDVAENLNKKLQFCHQRLQIISQALSSWVKSDMSSPFQDFVEQIQKTKYLQGDQGIVEELMEDDPRRAKEAEIMLHYIERFNELISLGEYEKAACYAANSPRRILRNIGTMNTFKAVGKIRGKPLPLLLFFEALFITSHAFPCPVDAALTLEGIKCGLSEKRLDLVTNWVTQERLTFSEEAGDVICDYGEQDTYNKAKCLALAQIVYSECGLHKKAILCLCKQGQTHRVMEYIQQLKDFTTDDLLQLLMSCPQVELIQCLTKELNEKQPSLSFGLAILHLFSADMKKVGIKLLQEINKGGIDAVESLMINDSFCSIEKWQEVANICSQNGFDKLSNDITSILRSQAAVTEISEEDDAVNLMEHVFW", "length": 586 }, "evidence": [ { "id": "A0A8C2N620", "url": "https://omabrowser.org/oma/group/A0A8C2N620/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N620", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N620" }, { "id": "PF15739", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15739" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Translin-associated factor X-interacting protein 1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 141, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 129, "end_pos": 131 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QNZ5-1", "uniprot_ac": "A0A8C2QNZ5", "uniprot_id": "A0A8C2QNZ5_CRIGR", "mass": { "chemical_mass": 65348.0, "monoisotopic_mass": 65348.0 }, "refseq": { "ac": "XP_035301198", "name": "ras-specific guanine nucleotide-releasing factor RalGPS2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301198" }, "gene_names": [ { "name": "Ralgps2", "type": "recommended", "evidence": [ { "id": "A0A8C2QNZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" } ] }, { "name": "Ralgps2", "type": "synonym", "evidence": [ { "id": "XP_035301198", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301198" } ] } ], "protein_names": [ { "name": "Ras-specific guanine nucleotide-releasing factor RalGPS2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QNZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5/entry#names_and_taxonomy" } ] }, { "name": "ras-specific guanine nucleotide-releasing factor RalGPS2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035301198", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301198" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301198", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301198" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNZ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ralgps2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5", "locus": {} } ], "crossref": [ { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13310", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13310", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773243", "url": "https://www.ncbi.nlm.nih.gov/gene/100773243", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773243", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773243", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XSAESED", "url": "https://omabrowser.org/oma/group/XSAESED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QNZ5", "url": "https://www.orthodb.org/?gene=A0A8C2QNZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113:SF357", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113:SF357", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301198", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301198", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N694", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N694", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N694-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N694-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QNZ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QNZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLMNGQASNVNIVATVSEKSSSSESLSDKGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPILPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGASPQSRRKSSAAEGALLPQTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVPRNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVCVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGSRMNAMLWFKHLSAACQSNRQQVPTNLMTFE", "length": 583, "header": "tr|A0A8C2QNZ5-1|A0A8C2QNZ5_CRIGR Isoform 1 of Ras-specific guanine nucleotide-releasing factor RalGPS2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ralgps2 PE=4 SV=1 CANONICAL=A0A8C2QNZ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N694-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N694/entry", "sequence": { "sequence": "MDLMNGQASNVNIVATVSEKSSSSESLSDKGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPILPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGASPQSRRKSSAAEGALLPQTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFESSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVCVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGSRMNAMLWFKHLSAACQSNRQQVPTNLMTFE", "length": 557, "header": "tr|A0A8C2N694-1|A0A8C2QNZ5_CRIGR Computationally mapped isoform of Ras-specific guanine nucleotide-releasing factor RalGPS2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ralgps2 PE=4 SV=1 CANONICAL=A0A8C2QNZ5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QNZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5/entry", "sequence": { "sequence": "MDLMNGQASNVNIVATVSEKSSSSESLSDKGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPILPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGASPQSRRKSSAAEGALLPQTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVPRNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVCVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGSRMNAMLWFKHLSAACQSNRQQVPTNLMTFE", "length": 583, "header": "tr|A0A8C2QNZ5-1|A0A8C2QNZ5_CRIGR Isoform 1 of Ras-specific guanine nucleotide-releasing factor RalGPS2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ralgps2 PE=4 SV=1 CANONICAL=A0A8C2QNZ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N694", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N694" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N694", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N694" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773243", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773243", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JTI5-1", "protein_name": "Ral GEF with PH domain and SH3 binding motif 2", "gene_name": "Ralgps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLMNGQASSVNIGATVSEKSSSSESLSEKGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPMLPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGASTPRSAASREDLAGPDVGASPQGGRKSSAAEGALLPQTPPSPRHLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRMPRNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYPAKSLKATERKHFKSTSNKNVSVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGSRMNAMLWFKHLSAACQSNRQQIIGSNIMHYNFRRLNIALIFILLYQAICHDS", "length": 605 }, "evidence": [ { "id": "A0A8C2QNZ5", "url": "https://omabrowser.org/oma/group/A0A8C2QNZ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNN3-1", "protein_name": "Ral GEF with PH domain and SH3 binding motif 2", "gene_name": "RALGPS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLMNGQASNVNIAATASEKSSSSESLSDKGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELASCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPMLPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGASPQSGRKSMAAEGALLPQTPPSPRNLIQHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVARNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVSVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGSRMNAMLWFKHLSAACQSNKQQVPTNLMTFE", "length": 583 }, "evidence": [ { "id": "A0A8C2QNZ5", "url": "https://omabrowser.org/oma/group/A0A8C2QNZ5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1S6Y4-1", "protein_name": "Ral GEF with PH domain and SH3 binding motif 2", "gene_name": "RALGPS2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDLMNGQASSVNIAAAASEKSSSSESLSDRGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPMLPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGASPQSGRKSVAAEGALLPQTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVARNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVSVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGNRMNAMLWFKHLTAACQSNKQQVPTNLMTFE", "length": 583 }, "evidence": [ { "id": "A0A8C2QNZ5", "url": "https://omabrowser.org/oma/group/A0A8C2QNZ5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q0E949-1", "protein_name": "Ral GEF with PH domain and SH3 binding motif, isoform B", "gene_name": "RalGPS", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MMRYSEISRDLSTDNLRYSELSRKPTTDYNGYTGQAYAATQFKQSSPPPPPSQQQQQPTRVSKQRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKNSIGCLNSFSSSPDSPGCYYTIAASAAPPSKSQSLPAHASIKQLDAVILSALRVPADVLANQITLLDFPVFAQIQPDELSSCAWTKKDKHVNTPNIVAFTKRFNHTSFWTVQEILNAEQPKQRAEIITHFIKVAKKLHELNNLHSLFAIISAMQSASIYRLTKTWACLSKKDRNAFDRLSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDLIYIDLAHPHKGGLEPEQRRNKMNNILRVISNYQQSNYKHLQKHEATQKYLTSIRYIEELQNIFEEDQYKRSLNLEPASPSGPSSSSCSSKESFNVEVVTPALGCLNLSPAKTIGSMRMASGTKFVPGHRKCRSLGTKFRSSSLPRNFAEKCQCCIVMIAPGIGTISNKRCRCRRIFGKIATHNHSDGHPHHLHLELDPSQVQPRHHLLDDSVLEHSDALSQADLTSLESAEGIMCDFTGSDCDLMSPEAAAAMHGCVRRKTVQKEGRKPAVASWQRYWLQIWANSLVYFPPKSFKGSERNDFKREPCKVCPLDGWYAHVSDNTKHKNTFELCHRTLGTVYRFRTDSPQMTHLWSNAICKLATMRVPKPLPTNLMSFE", "length": 702 }, "evidence": [ { "id": "A0A8C2QNZ5", "url": "https://omabrowser.org/oma/group/A0A8C2QNZ5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q5ZJK0-1", "protein_name": "Ras-specific guanine nucleotide-releasing factor RalGPS1", "gene_name": "RALGPS1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDLMNGQSSSVNIAATASEKSSSSESLSDKGSAELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPEELASCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKATFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILESEQRTNLMNNILRIISDLQQSCEYDIPLLPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPHSAASREDLVASEVGASPQSGRKNAAAEGALLPPTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHVPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPGTRVSRNGYRGHMKASSSLESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWVALCGTQLFYYAAKSLKATERKHFKSTPSKNVSVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGNRMNAMLWFKHLSAACQSNRQQVPANLMTFE", "length": 584 }, "evidence": [ { "id": "A0A8C2QNZ5", "url": "https://omabrowser.org/oma/group/A0A8C2QNZ5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q86X27-1", "protein_name": "Ras-specific guanine nucleotide-releasing factor RalGPS2", "gene_name": "RALGPS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLMNGQASSVNIAATASEKSSSSESLSDKGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPMLPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGTSTPRSAASREDLVGPEVGASPQSGRKSVAAEGALLPQTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVARNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVSVIGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGNRMNAMLWFKHLSAACQSNKQQVPTNLMTFE", "length": 583 }, "evidence": [ { "id": "A0A8C2QNZ5", "url": "https://omabrowser.org/oma/group/A0A8C2QNZ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ERD6-1", "protein_name": "Ras-specific guanine nucleotide-releasing factor RalGPS2", "gene_name": "Ralgps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLMNGQASSVTIAATVSEKSSSSESLSEKGSELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPILPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEPGASTPRSAASREDLAGPDIGASPQGGRKSSAAAAAAAAAEGALLPQTPPSPRNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPRHLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVPRNGYRSHTKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAKSLKATERKHFKSTSNKNVSVVGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGSRMNAMLWFKHLSAACQSNKQQVPTNLMTFE", "length": 590 }, "evidence": [ { "id": "A0A8C2QNZ5", "url": "https://omabrowser.org/oma/group/A0A8C2QNZ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNZ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNZ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNZ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNZ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QNZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 457, "end_pos": 569, "start_aa": "Ala", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QNZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ5" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 287, "start_aa": "Thr", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { 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"A0A8C2N6U0", "uniprot_id": "A0A8C2N6U0_CRIGR", "mass": { "chemical_mass": 56788.0, "monoisotopic_mass": 56788.0 }, "refseq": { "ac": "XP_003506836", "name": "cysteine-rich secretory protein LCCL domain-containing 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506836" }, "gene_names": [ { "name": "Crispld1", "type": "recommended", "evidence": [ { "id": "A0A8C2N6U0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0" } ] }, { "name": "Crispld1", "type": "synonym", "evidence": [ { "id": "XP_003506836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506836" } ] } ], "protein_names": [ { "name": "Cysteine-rich secretory protein LCCL domain-containing 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2N6U0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0/entry#names_and_taxonomy" } ] }, { "name": "cysteine-rich secretory protein LCCL domain-containing 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003506836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506836" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614291.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506836" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N6U0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Crispld1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0", "locus": {} } ], "crossref": [ { "id": "cd18813", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18813", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764078", "url": "https://www.ncbi.nlm.nih.gov/gene/100764078", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764078", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764078", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MVWDVEL", "url": "https://omabrowser.org/oma/group/MVWDVEL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N6U0", "url": "https://www.orthodb.org/?gene=A0A8C2N6U0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F9I3", "url": "https://www.orthodb.org/?gene=A0A9J7F9I3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31331:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31331:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506836", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N6U0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N6U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9I3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9I3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9I3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMCTAREWLRVTALLFVARAVPAMVVPNATLLEKLLEKYMDEDGEWWTAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAETCLWEHGPANLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVRDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSEGYYTPREEETNEIERQQAQVRDTHVRTRSDDSNRNEVVSTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGVQTIGKYHSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGSRVYSDLSSICRAAVHAGVVRNNGGYVDVMPVDKRKMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 500, "header": "tr|A0A8C2N6U0-1|A0A8C2N6U0_CRIGR Isoform 1 of Cysteine-rich secretory protein LCCL domain-containing 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Crispld1 PE=4 SV=1 CANONICAL=A0A8C2N6U0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N6U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0/entry", "sequence": { "sequence": "MMCTAREWLRVTALLFVARAVPAMVVPNATLLEKLLEKYMDEDGEWWTAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAETCLWEHGPANLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVRDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSEGYYTPREEETNEIERQQAQVRDTHVRTRSDDSNRNEVVSTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGVQTIGKYHSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGSRVYSDLSSICRAAVHAGVVRNNGGYVDVMPVDKRKMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 500, "header": "tr|A0A8C2N6U0-1|A0A8C2N6U0_CRIGR Isoform 1 of Cysteine-rich secretory protein LCCL domain-containing 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Crispld1 PE=4 SV=1 CANONICAL=A0A8C2N6U0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9I3/entry", "sequence": { "sequence": "MSMSATHIVLLDALAPFAHTTLRGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSEGYYTPREEETNEIERQQAQVRDTHVRTRSDDSNRNEVVSTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGVQTIGKYHSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGSRVYSDLSSICRAAVHAGVVRNNGGYVDVMPVDKRKMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 314, "header": "tr|A0A9J7F9I3-1|A0A9J7F9I3_CRIGR Computationally mapped isoform of Cysteine-rich secretory protein LCCL domain-containing 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Crispld1 PE=4 SV=1 CANONICAL=A0A8C2N6U0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 79, "start_aa": "Thr", "end_pos": 79, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr79", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N6U0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N6U0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6U0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764078", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764078", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B5DFM5-1", "protein_name": "Cysteine-rich secretory protein LCCL domain containing 1", "gene_name": "Crispld1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMCKAQEWLRMTALLFVARAVPAMVVPNATLLEKLLEKYMDEDDEWWTAKQRGKRAITDNDMQSILDLHNKLRSQVYPAASNMEYMTWDVELERSAESWAETCLWEHGPTSLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVRDFSYPYEHECDPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGKPCSACPPSFGGGCRENLCYKEGSDQYYTPQEEETNEIERQESQVHDTHVRTRSDDSNRNDVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGIQTIGKYRSANSFIVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGSRIYSDLSSICRAAVHAGVIRNHGGYVDVMPVDKRRMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 500 }, "evidence": [ { "id": "A0A8C2N6U0", "url": "https://omabrowser.org/oma/group/A0A8C2N6U0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1RWK3-1", "protein_name": "Cysteine rich secretory protein LCCL domain containing 1", "gene_name": "CRISPLD1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKCTAREWLRVTTLLFMARAVPAMVVPNATLLEKLLEKYMDEDGEWWMAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAETCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVKDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDSYYPPREEETNEIERQQSQVHATHIRTRADDSDRNEVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNDGGWVDITRQGRKHYFIKSNRNGIQTIGKYQSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGTRIYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKTYTASFQNGIFSESLQNPPGGKAFRVFAVM", "length": 500 }, "evidence": [ { "id": "A0A8C2N6U0", "url": "https://omabrowser.org/oma/group/A0A8C2N6U0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q8CGD2-1", "protein_name": "Cysteine-rich secretory protein LCCL domain-containing 1", "gene_name": "Crispld1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMCKAQEWLRVTALLFVARAVPAMVVPNATLLEKLLEKYMDEDGEWWTAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAEMCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVRDFSYPYENECDPYCPFRCSGPVCTHYTQVVWATSSRIGCAVNLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDRYYTPREEETNEIERQQSQVHDTHVRTRSDDSDRNDVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGIQTIGKYHSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQSNPHYARVIGTRIYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 500 }, "evidence": [ { "id": "A0A8C2N6U0", "url": "https://omabrowser.org/oma/group/A0A8C2N6U0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H336-1", "protein_name": "Cysteine-rich secretory protein LCCL domain-containing 1", "gene_name": "CRISPLD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKCTAREWLRVTTVLFMARAIPAMVVPNATLLEKLLEKYMDEDGEWWIAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAESCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQSWYDEVKDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSNRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDRYYPPREEETNEIERQQSQVHDTHVRTRSDDSSRNEVISAQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNDGGWVDITRQGRKHYFIKSNRNGIQTIGKYQSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGTRVYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKTYIASFQNGIFSESLQNPPGGKAFRVFAVV", "length": 500 }, "evidence": [ { "id": "A0A8C2N6U0", "url": "https://omabrowser.org/oma/group/A0A8C2N6U0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N6U0", "url": 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CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613627.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496586" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N6V3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6V3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Abracl", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6V3", "locus": {} } ], "crossref": [ { "id": "100769731", "url": "https://www.ncbi.nlm.nih.gov/gene/100769731", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038095", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038095", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769731", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769731", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QRVHDNV", "url": "https://omabrowser.org/oma/group/QRVHDNV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N6V3", "url": "https://www.orthodb.org/?gene=A0A8C2N6V3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46334:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46334:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496586", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N6V3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6V3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N6V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6V3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVTYTGELLLQGVHDDVDIVLLQD", "length": 81, "header": "tr|A0A8C2N6V3-1|A0A8C2N6V3_CRIGR Isoform 1 of Costars family protein ABRACL OS=Cricetulus griseus OX=10029 GN=Abracl PE=3 SV=1 CANONICAL=A0A8C2N6V3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N6V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6V3/entry", "sequence": { "sequence": "MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVTYTGELLLQGVHDDVDIVLLQD", "length": 81, "header": "tr|A0A8C2N6V3-1|A0A8C2N6V3_CRIGR Isoform 1 of Costars family protein ABRACL OS=Cricetulus griseus OX=10029 GN=Abracl PE=3 SV=1 CANONICAL=A0A8C2N6V3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614567.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508681", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508681" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N6W2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6W2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gca", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6W2", "locus": {} } ], "crossref": [ { "id": "100768073", "url": "https://www.ncbi.nlm.nih.gov/gene/100768073", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768073", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768073", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NGAYSPF", "url": "https://omabrowser.org/oma/group/NGAYSPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N6W2", "url": "https://www.orthodb.org/?gene=A0A8C2N6W2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46735", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46735", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46735:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46735:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508681", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508681", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N6W2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6W2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N6W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6W2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAYPGYGGAFGNFSGHIPGMQMQMGQPMPGPSMFSGSYPGYLAYSDSYSPADDSMWTYFTAVAGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFSEFKELWAALTAWKQNFMTIDQDQSGSVEHHELSQAIALMGYRLSPQTLAAIVKRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMTI", "length": 218, "header": "tr|A0A8C2N6W2-1|A0A8C2N6W2_CRIGR Isoform 1 of Grancalcin OS=Cricetulus griseus OX=10029 GN=Gca PE=4 SV=1 CANONICAL=A0A8C2N6W2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N6W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N6W2/entry", "sequence": { "sequence": "MAYPGYGGAFGNFSGHIPGMQMQMGQPMPGPSMFSGSYPGYLAYSDSYSPADDSMWTYFTAVAGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFSEFKELWAALTAWKQNFMTIDQDQSGSVEHHELSQAIALMGYRLSPQTLAAIVKRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMTI", "length": 218, "header": "tr|A0A8C2N6W2-1|A0A8C2N6W2_CRIGR Isoform 1 of Grancalcin OS=Cricetulus griseus OX=10029 GN=Gca PE=4 SV=1 CANONICAL=A0A8C2N6W2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A8C2N787" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "T cell receptor signaling pathway", "id": "GO:0050852", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050852", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N787", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N787" } ], "pmid": "" }, { "name": "regulation of B cell activation", "id": "GO:0050864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050864", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N787", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N787" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2N787", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N787" }, { "id": "PF12736", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12736" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CABIT", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 248, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N834-1", "uniprot_ac": "A0A8C2N834", "uniprot_id": "A0A8C2N834_CRIGR", "mass": { "chemical_mass": 378068.0, "monoisotopic_mass": 378068.0 }, "refseq": { "ac": "XP_003502694", "name": "KICSTOR complex protein SZT2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502694" }, "gene_names": [ { "name": "Szt2", "type": "recommended", "evidence": [ { "id": "A0A8C2N834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834" } ] }, { "name": "Szt2", "type": "synonym", "evidence": [ { "id": "XP_003502694", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502694" } ] } ], "protein_names": [ { "name": "KICSTOR complex protein SZT2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003502694", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502694" } ] }, { "name": "KICSTOR complex protein SZT2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2N834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613906.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502694", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502694" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N834", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Szt2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834", "locus": {} } ], "crossref": [ { "id": "100766694", "url": "https://www.ncbi.nlm.nih.gov/gene/100766694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033228", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033228", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766694", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N834", "url": "https://www.orthodb.org/?gene=A0A8C2N834", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14918", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14918", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14918:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14918:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003502694", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502694", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N834", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N834-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLNHLHQTVQATPQEFLLQSEQELEVLSVLPPGWQPDEPVAPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSRCLGGLLRPFRVPGSCINFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQREAFLQQVYEQLCLFEDKVATMLQQQYEPQSQAEDQSPESGESLGRKVGVSMVTADLGLVSMIRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVGGVYSYDCSFGHVPNVELMKFIAMATFGSYLSTCPEPEPGNLGLTVYHRAFLLYSFLRSGEALNPEYYCGSQHRLFNEHLVSASSNPALALRRKKHTEKEVPADLVSTVSVRLREGYSVREVTLAKGGSQLEVKLVLLWKHNMRIEYVAMAPWPLEPEGPRVTRVEVTMEGGYDILHDVSCALRQPIRSLYRTHVIRRFWNTLQSINQTDQMLAHLQSFSSVPEHFTLPDSTKSGVPLFYIPPGSTTPVLSLQHSGSDSSHAQFAAYWKPVLSMDANSWQRWLHMHRLVLILEHDTPLPKHLHTPGSNGRYSTIQCRISHSSLTSLLRDWSSFVLVEGYSYVKLLSSGPDQPPSSFYMVRIISKTPCMVLRLGFPIGTPAQARHKIVSDLQEEILRLRFPHRVQSKEPTPKVKRKGLGGIGGGNSPSKSPPTLGPQQALSDRPCLVVLHKPLDKLLIRYEKLPLDYRAPFLLTLEPPGPLPLVSGRSASSSLASLSRYLYHHRWLWSVPSGLAPTLPLSAIAQLLSVLTEVRLSEGFHFACSGEGIINMVLELPVQNEPLGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSELNLVTEVWVEPQYGRVGPGPESWKHLQDLTYSEIPQALHPRDAACIGSLLTFEYLIQLCQSKEWGPVPPEPRVSDGLAQGGDACVHEIPFRFDLLGLLPQCQQLQMFFLLLSREPEGVPLAEGPCPTNDMVLCLLHSCLGQELSDREIPLTPADQAAFLNEVLRRSCRDPGLEGPLVGGHTVPKDQAGNSTQATGDSTLPTLSVGIPGILRPSTSAQPPQWHCYARLLNPQHVFLTFLPATFSDVQHLTAYGLEGSFQEETKPKSGDCSGAPSLKDLGGTGPKATQSQVPILSVTLASDSAQDPGESSSPSCRDLPAYGGRQVPHTECTDGPRTRCPVYIYSCSLEALREQMVGLQPPQAPRDLVFRTQYLDHPSASSAWMEPRYKEAATHCALLQEHAQRCYVRGLFRSLQQAQSVTCQDLLTAVDACEEILQEIDITAFLLALCGHTWGLPHAPPSPGPLSPGPFSSSIEEGPEPRERAILVSESSIETEDLSEPEFQSTRVPGNPDPGPEISLTDVCQLRGEAHDALHGLIQEKFLEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKVSDLEFSEAELVGEEGDTSACCVVTESDPELEVEYRESREPDLGPAGLDSTSLSDADTVNPDEDSFSILGGDSPTGPDSLMHDLPPLFLHLTCSVRLRGQHSSVPVCSLPTCLGQVLASLEGPPIGGRVPLRDLSITLDVFVLTLPLEVELPPASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPGLSNLATPHRLAIESTMNEIRWLLEDEMVGALRRGGIPQSRALHRAATHIHSSSGRSTCLRQAPPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPGGLHGDPPPAAWAWHSREDKAEDAEGEVLVASPQVPGSLEDSEGAPLVSLPSLSQGGSQPGPTRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPSETLGEKAPFTLRTPPGPVPPQPSHSGLPGPSLPDFWLIVRILQDRVEVYAHARGLIREDSGPGTECRHLQQLLVRRIGEICREVNQRLLLQDLHDSHVCNSLLVAESEEDLWRSETPFHSRQRAPLPSDDYAADESCAPRGYLAATMQFVPGHFSCDVVWGTVIRVHSRLKMGPSMGVSRAIQALRSVLNAFSVVNRKNMFVYQERATKAVYYLRLLETSCSDRPWEGDSLPPSLALSRSQEPICSEDALGPRSPLDMASSRSPDAVRPVGQVDRHIQLLVHGVGQAGPEITDELVRVLRRRLDEATLDVITVMLVRNCKLTPADVEFIQPPGSLPSEVLHLALPPSCRPWLPALAWYLRQNLLTFLHSPKYTDSNSRNHFQHPLPPQGGLPDLDIYLYNKPGGQGTGGKGVACITLAFVEEGGAPISLAVWPPSSPGPPDPLQEEEFEQLTQVIRCPNMLDSSSAQDGSPRLRLDVWEKGNISIVQLEEKLRAAARQALADAIMELRLLPASLCIEDTPPGSLRSGSLETKSPACRASTFPSNPVSGEPVTPPSKAGRRSFWDMLSKTEGGDLGSPKTTDDIVLDRPEDTRGRRRHKTENVRTPGGSERAPGPDSGAQRQRRRTAQLEEGEVGTLHPVFARVIQRWMGFMVQIGCASVSRSSTHMVSRFLLPSILSEFTSLVISMAGDTSVRVFEQHLGSEPDIFSPCSPGQLGPAPRPAAERHLLLLGRNFAQWRRPTQQAAKAVQRFESGGDGSPGRSAPRQRLLLLEVIDKKLQLLTYNWAPDLGAALGRALIRLVQWQNARAHLIFCLLSQKLGLFHHCGQLDFPMRDGKEPNPFLLPTMEVETLIRNASPPLSREQGRLSGSSRGGGPLSLDTFPFDEALRDITAARPSSTAGPVPRPPDPVTYHGHQFLEIKMTERKELERQMKMENLFVSWQQRSAPASMPISAGELETLKQSSRLVHYCATALLFDPAAWLHGPPETSVPSEGQRRQRPESGSGGREVPTSCESLEVPPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPPSPTRSTSRLRAMAILGTEGRGSFSCPKAKTEGSPKSTGTPVTTYHLQRALPGGIILMELTFQGCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFSYDFHLRLVHQHVLGAHLVLRHGYHLTTFLQHFLAHHPDGPHFGRNHIYQGTLELPTPLIAAHQLYNYVADHASSYHMKPLRMARPGGPEHNEYALVSAWHSSGSYLDSEGLRHQDDFDVSLLVCHSAAPFEEQGEAERHVLRLQFFVVLTSQRELFPRLTADMRRFRKPSRLPPEPEVPGSLVGSPGEASGIMLAPGPAPLFPPLATEVGMARARLAQLVRLAGGHCRRDTLWKRLFLLEPPGPDRLRLGGRLALAELEELLEAVHAKSIADIDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSPDLGTQYLVVLNQKFTDCFVLVFLDSHLGKTSLTVVFREPFPVQPQDSESPPAQLVSTYHHLESVINTACFTLWTRLL", "length": 3432, "header": "tr|A0A8C2N834-1|A0A8C2N834_CRIGR Isoform 1 of KICSTOR complex protein SZT2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Szt2 PE=4 SV=1 CANONICAL=A0A8C2N834-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N834-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834/entry", "sequence": { "sequence": "MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLNHLHQTVQATPQEFLLQSEQELEVLSVLPPGWQPDEPVAPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSRCLGGLLRPFRVPGSCINFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQREAFLQQVYEQLCLFEDKVATMLQQQYEPQSQAEDQSPESGESLGRKVGVSMVTADLGLVSMIRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVGGVYSYDCSFGHVPNVELMKFIAMATFGSYLSTCPEPEPGNLGLTVYHRAFLLYSFLRSGEALNPEYYCGSQHRLFNEHLVSASSNPALALRRKKHTEKEVPADLVSTVSVRLREGYSVREVTLAKGGSQLEVKLVLLWKHNMRIEYVAMAPWPLEPEGPRVTRVEVTMEGGYDILHDVSCALRQPIRSLYRTHVIRRFWNTLQSINQTDQMLAHLQSFSSVPEHFTLPDSTKSGVPLFYIPPGSTTPVLSLQHSGSDSSHAQFAAYWKPVLSMDANSWQRWLHMHRLVLILEHDTPLPKHLHTPGSNGRYSTIQCRISHSSLTSLLRDWSSFVLVEGYSYVKLLSSGPDQPPSSFYMVRIISKTPCMVLRLGFPIGTPAQARHKIVSDLQEEILRLRFPHRVQSKEPTPKVKRKGLGGIGGGNSPSKSPPTLGPQQALSDRPCLVVLHKPLDKLLIRYEKLPLDYRAPFLLTLEPPGPLPLVSGRSASSSLASLSRYLYHHRWLWSVPSGLAPTLPLSAIAQLLSVLTEVRLSEGFHFACSGEGIINMVLELPVQNEPLGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSELNLVTEVWVEPQYGRVGPGPESWKHLQDLTYSEIPQALHPRDAACIGSLLTFEYLIQLCQSKEWGPVPPEPRVSDGLAQGGDACVHEIPFRFDLLGLLPQCQQLQMFFLLLSREPEGVPLAEGPCPTNDMVLCLLHSCLGQELSDREIPLTPADQAAFLNEVLRRSCRDPGLEGPLVGGHTVPKDQAGNSTQATGDSTLPTLSVGIPGILRPSTSAQPPQWHCYARLLNPQHVFLTFLPATFSDVQHLTAYGLEGSFQEETKPKSGDCSGAPSLKDLGGTGPKATQSQVPILSVTLASDSAQDPGESSSPSCRDLPAYGGRQVPHTECTDGPRTRCPVYIYSCSLEALREQMVGLQPPQAPRDLVFRTQYLDHPSASSAWMEPRYKEAATHCALLQEHAQRCYVRGLFRSLQQAQSVTCQDLLTAVDACEEILQEIDITAFLLALCGHTWGLPHAPPSPGPLSPGPFSSSIEEGPEPRERAILVSESSIETEDLSEPEFQSTRVPGNPDPGPEISLTDVCQLRGEAHDALHGLIQEKFLEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKVSDLEFSEAELVGEEGDTSACCVVTESDPELEVEYRESREPDLGPAGLDSTSLSDADTVNPDEDSFSILGGDSPTGPDSLMHDLPPLFLHLTCSVRLRGQHSSVPVCSLPTCLGQVLASLEGPPIGGRVPLRDLSITLDVFVLTLPLEVELPPASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPGLSNLATPHRLAIESTMNEIRWLLEDEMVGALRRGGIPQSRALHRAATHIHSSSGRSTCLRQAPPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPGGLHGDPPPAAWAWHSREDKAEDAEGEVLVASPQVPGSLEDSEGAPLVSLPSLSQGGSQPGPTRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPSETLGEKAPFTLRTPPGPVPPQPSHSGLPGPSLPDFWLIVRILQDRVEVYAHARGLIREDSGPGTECRHLQQLLVRRIGEICREVNQRLLLQDLHDSHVCNSLLVAESEEDLWRSETPFHSRQRAPLPSDDYAADESCAPRGYLAATMQFVPGHFSCDVVWGTVIRVHSRLKMGPSMGVSRAIQALRSVLNAFSVVNRKNMFVYQERATKAVYYLRLLETSCSDRPWEGDSLPPSLALSRSQEPICSEDALGPRSPLDMASSRSPDAVRPVGQVDRHIQLLVHGVGQAGPEITDELVRVLRRRLDEATLDVITVMLVRNCKLTPADVEFIQPPGSLPSEVLHLALPPSCRPWLPALAWYLRQNLLTFLHSPKYTDSNSRNHFQHPLPPQGGLPDLDIYLYNKPGGQGTGGKGVACITLAFVEEGGAPISLAVWPPSSPGPPDPLQEEEFEQLTQVIRCPNMLDSSSAQDGSPRLRLDVWEKGNISIVQLEEKLRAAARQALADAIMELRLLPASLCIEDTPPGSLRSGSLETKSPACRASTFPSNPVSGEPVTPPSKAGRRSFWDMLSKTEGGDLGSPKTTDDIVLDRPEDTRGRRRHKTENVRTPGGSERAPGPDSGAQRQRRRTAQLEEGEVGTLHPVFARVIQRWMGFMVQIGCASVSRSSTHMVSRFLLPSILSEFTSLVISMAGDTSVRVFEQHLGSEPDIFSPCSPGQLGPAPRPAAERHLLLLGRNFAQWRRPTQQAAKAVQRFESGGDGSPGRSAPRQRLLLLEVIDKKLQLLTYNWAPDLGAALGRALIRLVQWQNARAHLIFCLLSQKLGLFHHCGQLDFPMRDGKEPNPFLLPTMEVETLIRNASPPLSREQGRLSGSSRGGGPLSLDTFPFDEALRDITAARPSSTAGPVPRPPDPVTYHGHQFLEIKMTERKELERQMKMENLFVSWQQRSAPASMPISAGELETLKQSSRLVHYCATALLFDPAAWLHGPPETSVPSEGQRRQRPESGSGGREVPTSCESLEVPPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPPSPTRSTSRLRAMAILGTEGRGSFSCPKAKTEGSPKSTGTPVTTYHLQRALPGGIILMELTFQGCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFSYDFHLRLVHQHVLGAHLVLRHGYHLTTFLQHFLAHHPDGPHFGRNHIYQGTLELPTPLIAAHQLYNYVADHASSYHMKPLRMARPGGPEHNEYALVSAWHSSGSYLDSEGLRHQDDFDVSLLVCHSAAPFEEQGEAERHVLRLQFFVVLTSQRELFPRLTADMRRFRKPSRLPPEPEVPGSLVGSPGEASGIMLAPGPAPLFPPLATEVGMARARLAQLVRLAGGHCRRDTLWKRLFLLEPPGPDRLRLGGRLALAELEELLEAVHAKSIADIDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSPDLGTQYLVVLNQKFTDCFVLVFLDSHLGKTSLTVVFREPFPVQPQDSESPPAQLVSTYHHLESVINTACFTLWTRLL", "length": 3432, "header": "tr|A0A8C2N834-1|A0A8C2N834_CRIGR Isoform 1 of KICSTOR complex protein SZT2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Szt2 PE=4 SV=1 CANONICAL=A0A8C2N834-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A4/entry", "sequence": { "sequence": "MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLNHLHQTVQATPQEFLLQSEQELEVLSVLPPGWQPDEPVAPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSRCLGGLLRPFRVPGSCINFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQREAFLQQVYEQLCLFEDKVATMLQQQYEPQSQAEDQSPESGESLGRKVGVSMVTADLGLVSMIRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVGGVYSYDCSFGHVPNVELMKFIAMATFGSYLSTCPEPEPGNLGLTVYHRAFLLYSFLRSGEALNPEYYCGSQHRLFNEHLVSASSNPALALRRKKHTEKEVPADLVSTVSVRLREGYSVREVTLAKGGSQLEVKLVLLWKHNMRIEYVAMAPWPLEPEGPRVTRVEVTMEGGYDILHDVSCALRQPIRSLYRTHVIRRFWNTLQSINQTDQMLAHLQSFSSVPEHFTLPDSTKSGVPLFYIPPGSTTPVLSLQHSGSDSSHAQFAAYWKPVLSMDANSWQRWLHMHRLVLILEHDTPLPKHLHTPGSNGRYSTIQCRISHSSLTSLLRDWSSFVLVEGYSYVKLLSSGPDQPPSSFYMVRIISKTPCMVLRLGFPIGTPAQARHKIVSDLQEEILRLRFPHRVQSKEPTPKVKRKGLGGIGGGNSPSKSPPTLGPQQALSDRPCLVVLHKPLDKLLIRYEKLPLDYRAPFLLTLEPPGPLPLVSGRSASSSLASLSRYLYHHRWLWSVPSGLAPTLPLSAIAQLLSVLTEVRLSEGFHFACSGEGIINMVLELPVQNEPLGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSELNLVTEVWVEPQYGRVGPGPESWKHLQDLTYSEIPQALHPRDAACIGSLLTFEYLIQLCQSKEWGPVPPEPRVSDGLAQGGDACVHEIPFRFDLLGLLPQCQQLQMFFLLLSREPEGVPLAEGPCPTNDMVLCLLHSCLGQELSDREIPLTPADQAAFLNEVLRRSCRDPGLEGPLVGGHTVPKDQAGNSTQATGDSTLPTLSVGIPGILRPSTSAQPPQWHCYARLLNPQHVFLTFLPATFSDVQHLTAYGLEGSFQEETKPKSGDCSGAPSLKDLGGTGPKATQSQVPILSVTLASDSAQDPGESSSPSCRDLPAYGGRQVPHTECTDGPRTRCPVYIYSCSLEALREQMVGLQPPQAPRDLVFRTQYLDHPSASSAWMEPRYKEAATHCALLQEHAQRCYVRGLFRSLQQAQSVTCQDLLTAVDACEEILQEIDITAFLLALCGHTWGLPHAPPSPGPLSPGPFSSSIEEGPEPRERAILVSESSIETEDLSEPEFQSTRVPGNPDPGPEISLTDVCQLRGEAHDALHGLIQEKFLEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKVSDLEFSEAELVGEEGDTSACCVVTESDPELEVEYRESREPDLGPAGLDSTSLSDADTVNPDEDSFSILGGDSPTGPDSLMHDLPPLFLHLTCSVRLRGQHSSVPVCSLPTCLGQVLASLEGPPIGGRVPLRDLSITLDVFVLTLPLEVELPPASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPGLSNLATPHRLAIESTMNEIRWLLEDEMVGALRRGGIPQSRALHRAATHIHSSSGRSTCLRQAPPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPGGLHGDPPPAAWAWHSREDKAEDAEGEVLVASPQVPGSLEDSEGAPLVSLPSLSQGGSQPGPTRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPSETLGEKAPFTLRTPPGPVPPQPSHSGLPGPSLPDFWLIVRILQDRVEVYAHARGLIREDSGPGTECRHLQQLLVRRIGEICREVNQRLLLQDLHDSHVCNSLLVAESEEDLWRSETPFHSRQRAPLPSDDYAADESCAPRGYLAATMQFVPGHFSCDVVWGTVIRVHSRLKMGPSMGVSRAIQALRSVLNAFSVVNRKNMFVYQERATKAVYYLRLLETSCSDRPWEGDSLPPSLALSRSQEPICSEDALGPRSPLDMASSRSPDAVRPVGQVDRHIQLLVHGVGQAGPEITDELVRVLRRRLDEATLDVITVMLVRNCKLTPADVEFIQPPGSLPSEVLHLALPPSCRPWLPALAWYLRQNLLTFLHSPKYTDSNSRNHFQHPLPPQGGLPDLDIYLYNKPGGQGTGGKGVACITLAFVEEGGAPISLAVWPPSSPGPPDPLQEEEFEQLTQVIRCPNMLDSSSAQDGSPRLRLDVWEKGNISIVQLEEKLRAAARQALADAIMELRLLPASLCIEDTPPGSLRSGSLETKSPACRASTFPSNPVSGEPVTPPSKAGRRSFWDMLSKTEGGDLGSPKTTDDIVLDRPEDTRGRRRHKTENVRTPGGSERAPGPDSGAQRQRRRTAQLEEGEVGTLHPVFARVIQRWMGFMVQIGCASVSRSSTHMVSRFLLPSILSEFTSLVISMAGDTSVRVFEQHLGSEPDIFSPCSPGQLGPAPRPAAERHLLLLGRNFAQWRRPTQQAAKAVQRFESGGDGSPGRSAPRQRLLLLEVIDKKLQLLTYNWAPDLGAALGRALIRLVQWQNARAHLIFCLLSQKLGLFHHCGQLDFPMRDGKEPNPFLLPTMEVETLIRNASPPLSREQGRLSGSSRGGGPLSLDTFPFDEALRDITAARPSSTAGPVPRPPDPVTYHGHQFLEIKMTERKELERQMKMENLFVSWQQRSAPASMPISAGELETLKQSSRLVHYCATALLFDPAAWLHGPPETSVPSEGQRRQRPESGSGGREVPTSCESLEVPPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPPSPTRSTSRLRAMAILGTEGRGSFSCPKAKTEGSPKSTGTPVTTYHLQRALPGGIILMELTFQGCYFCVKQFALECSRIPMGQAVNSQVARNVTTGPIPCCKFTSTSGRLGSSGTQCCQNRFLSIVGTSMPG", "length": 3068, "header": "tr|A0A9J7K1A4-1|A0A9J7K1A4_CRIGR Computationally mapped isoform of KICSTOR complex protein SZT2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Szt2 PE=4 SV=1 CANONICAL=A0A8C2N834-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1850, "start_aa": "Thr", "end_pos": 1850, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1850", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2434, "start_aa": "Thr", "end_pos": 2434, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2434", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N834", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N834", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766694", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766694", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N834", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N834" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1090, "end_pos": 1092, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2364, "end_pos": 2366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2735, "end_pos": 2737, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1850, 2434 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1090, "end_pos": 1092 }, { "start_pos": 2364, "end_pos": 2366 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 2735, "end_pos": 2737 }, { "start_pos": 501, "end_pos": 503 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2N8K6-1", "uniprot_ac": "A0A8C2N8K6", "uniprot_id": "A0A8C2N8K6_CRIGR", "mass": { "chemical_mass": 14876.0, "monoisotopic_mass": 14876.0 }, "refseq": { "ac": "XP_003503300", "name": "transmembrane protein 254 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503300" }, "gene_names": [ { "name": "Tmem254", "type": "recommended", "evidence": [ { "id": "A0A8C2N8K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6" } ] }, { "name": "Tmem254", "type": "synonym", "evidence": [ { "id": "XP_003503300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503300" } ] } ], "protein_names": [ { "name": "Transmembrane protein 254", "type": "recommended", "evidence": [ { "id": "A0A8C2N8K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 254 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003503300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503300" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613953.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503300", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503300" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N8K6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem254", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6", "locus": {} } ], "crossref": [ { "id": "100753036", "url": "https://www.ncbi.nlm.nih.gov/gene/100753036", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753036", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753036", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IMYKGWW", "url": "https://omabrowser.org/oma/group/IMYKGWW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N8K6", "url": "https://www.orthodb.org/?gene=A0A8C2N8K6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QP16", "url": "https://www.orthodb.org/?gene=A0A8C2QP16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34104", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34104", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34104:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34104:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14934", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14934", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503300", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503300", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N8K6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N8K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP16", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP16-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVAMSEARRDATAYFRAASPWLSLVTALGLGYFTWVVFWPQNIPYQSLGPLGSFTKYLVDHHHTLLRNGYWLAWLIHLGESFYAMVLCKHKGITDGQARLLWFLQTFLLGFSSLSILVAYRPKRQKHN", "length": 129, "header": "tr|A0A8C2N8K6-1|A0A8C2N8K6_CRIGR Isoform 1 of Transmembrane protein 254 OS=Cricetulus griseus OX=10029 GN=Tmem254 PE=4 SV=1 CANONICAL=A0A8C2N8K6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N8K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6/entry", "sequence": { "sequence": "MVVAMSEARRDATAYFRAASPWLSLVTALGLGYFTWVVFWPQNIPYQSLGPLGSFTKYLVDHHHTLLRNGYWLAWLIHLGESFYAMVLCKHKGITDGQARLLWFLQTFLLGFSSLSILVAYRPKRQKHN", "length": 129, "header": "tr|A0A8C2N8K6-1|A0A8C2N8K6_CRIGR Isoform 1 of Transmembrane protein 254 OS=Cricetulus griseus OX=10029 GN=Tmem254 PE=4 SV=1 CANONICAL=A0A8C2N8K6-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QP16-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP16/entry", "sequence": { "sequence": "MGTATGTGYFQRGSLFWLTVITVSFSYYTWVVFWPQNIPYQSLGPLGSFTKYLVDHHHTLLRNGYWLAWLIHLGESFYAMVLCKHKGITDGQARLLWFLQTFLLGFSSLSILVAYRPKRQKHN", "length": 123, "header": "tr|A0A8C2QP16-1|A0A8C2QP16_CRIGR Computationally mapped isoform of Transmembrane protein 254 OS=Cricetulus griseus OX=10029 GN=Tmem254 PE=4 SV=1 CANONICAL=A0A8C2N8K6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N8K6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753036", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753036", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1SI94-1", "protein_name": "Transmembrane protein 254", "gene_name": "TMEM254", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVVAKSEAGRAATSYFRTANPLPSLITILGLGYFGWMVFWPESIPYQSLGPLGPFTRYLLDHHHTLLHNGYWLAWLIHVVETLYAMVLCKSKGITNTSTQLLWFLQTFLFGMASLYYLITYRPRRQKQT", "length": 129 }, "evidence": [ { "id": "A0A8C2N8K6", "url": "https://omabrowser.org/oma/group/A0A8C2N8K6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { 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"Q8TBM7-1", "protein_name": "Transmembrane protein 254", "gene_name": "TMEM254", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATAAGATYFQRGSLFWFTVITLSFGYYTWVVFWPQSIPYQNLGPLGPFTQYLVDHHHTLLCNGYWLAWLIHVGESLYAIVLCKHKGITSGRAQLLWFLQTFFFGIASLTILIAYKRKRQKQT", "length": 123 }, "evidence": [ { "id": "A0A8C2N8K6", "url": "https://omabrowser.org/oma/group/A0A8C2N8K6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N8K6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N8K6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"uniprot_canonical_ac": "A0A8C2N928-1", "uniprot_ac": "A0A8C2N928", "uniprot_id": "A0A8C2N928_CRIGR", "mass": { "chemical_mass": 27202.0, "monoisotopic_mass": 27202.0 }, "refseq": { "ac": "XP_003515573", "name": "ly6/PLAUR domain-containing protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515573" }, "gene_names": [ { "name": "Lypd4", "type": "recommended", "evidence": [ { "id": "A0A8C2N928", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N928" } ] }, { "name": "Lypd4", "type": "synonym", "evidence": [ { "id": "XP_003515573", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515573" } ] } ], "protein_names": [ { "name": "Ly6/PLAUR domain-containing protein 4", "type": "synonym", "evidence": [ { "id": "A0A8C2N928", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N928/entry#names_and_taxonomy" } ] }, { "name": "ly6/PLAUR domain-containing protein 4", "type": "synonym", "evidence": [ { "id": "XP_003515573", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515573" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003618326.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003515573", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515573" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N928", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N928" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lypd4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N928", "locus": {} } ], "crossref": [ { "id": "cd23621", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23621", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759684", "url": "https://www.ncbi.nlm.nih.gov/gene/100759684", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759684", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759684", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2N928", "url": "https://www.orthodb.org/?gene=A0A8C2N928", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16529", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16529", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16529:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16529:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003515573", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515573", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N928", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N928", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N928-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N928-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLQDLRSLQLLCLLEAISLLPWTEALLCYEATASAFRAVTLHNWKWLLLRSMVCKLREGCEETIVYIETGTSRGIVSFKGCTSALSYPPQISYLVSPPGVSISSYSQVCRTYLCNNITNLEPFVRLKSTEPKYTVSSTKFCPTCVGRLDQECLPDFISTQTCPFTASSCYSSTLKLQAGNLNTTFLIMGCVRESHKLLADFQHIGSIRVFEAVNVLEKSQAVGAGHRSPGPPWILLLFPVLILST", "length": 246, "header": "tr|A0A8C2N928-1|A0A8C2N928_CRIGR Isoform 1 of Ly6/PLAUR domain-containing protein 4 OS=Cricetulus griseus OX=10029 GN=Lypd4 PE=4 SV=1 CANONICAL=A0A8C2N928-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N928-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N928/entry", "sequence": { "sequence": "MGLQDLRSLQLLCLLEAISLLPWTEALLCYEATASAFRAVTLHNWKWLLLRSMVCKLREGCEETIVYIETGTSRGIVSFKGCTSALSYPPQISYLVSPPGVSISSYSQVCRTYLCNNITNLEPFVRLKSTEPKYTVSSTKFCPTCVGRLDQECLPDFISTQTCPFTASSCYSSTLKLQAGNLNTTFLIMGCVRESHKLLADFQHIGSIRVFEAVNVLEKSQAVGAGHRSPGPPWILLLFPVLILST", "length": 246, "header": "tr|A0A8C2N928-1|A0A8C2N928_CRIGR Isoform 1 of Ly6/PLAUR domain-containing protein 4 OS=Cricetulus griseus OX=10029 GN=Lypd4 PE=4 SV=1 CANONICAL=A0A8C2N928-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"length": 1877, "header": "tr|A0A8C2NB10-1|A0A8C2NB10_CRIGR Isoform 1 of UPF0606 protein KIAA1549 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa1549 PE=4 SV=1 CANONICAL=A0A8C2NB10-1" }, "isoforms": [ { "isoform_ac": "A0A8C2NB10-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NB10/entry", "sequence": { "sequence": "MYSTAHGALSETPGSQPSISVLVLPSPSATTFGTAFLNLRQQTPSMAEHSIFEAHDGSVTSNEVATDDDEMDNFLPDAHWTSSRVVSPIQSITQSPLEPPQEMLEPGMTPSLPTISLQDEVLSGCQNTAQQATVQVESSGDFSTSWSAFLTSEGIIPTPSRSLVLRPTEIHSQLSSKALPETVASLTEGSENLLFSSWITVSQPLGNGVTQQPSVPLWEVSRPLMGVLTTSSDSYPNGTTAWSEHLIEAISLRTHPSVTLSPADPVSISPPSVLFSAPLSSGSFATQSAGISDNPFLSSKAGETLESLYGSRTLSFSDHSHLFNPEASLRPHTWCVSCVVSSAQQALARSLTEKDVDSGNGLETLSVTSGEASRLSPSSSMGAGFSELEDLQEFNTLFPSRPVVSLSSRSVGLWEVSMDMSPEVMSPEVDLSSITTTQVYTSHGHLATPSSLDSTFGFSVTSDLVMPSSMTHLLSSVIPSIHFESSFSLTANQTTPSLPAGNPSLLTSYSLVSSVESVESEVLADQERTSFLEPASGSLLDSTSGFYSAPLLDFSAPAPSRSDVLALPSLTSSDPSTFLSQLFPTMTETFSLSNSIDLQSPQLFVLNPTSLEPSQPWSSSDLLMKTVTLLPSHSEMSPLPSSPLDSLKLDEAWRVSLIESDVHLTSAFSDTTCVFDFSLIPHDSSVSTLVPSSSETSLGISTAGTPLSSLPTVSHLTPILTESSPFSTLTPSDSSVSMTDHHTPVSLMSSSVIPTSTESVSDLYLSASPTLASEVSPSPMPTRPVMGSSLIPTDLPPSTSPEPSSSPEPSMPDISTAPGDTVDSALNSEPMSQNPQGNSVPPPQPSLGPEITSTLEATVGTPALATAKPPYVCDITVPDAYLITTVLARRAVQEYIITSIKEVLRVHFNRAVELKVYELFTDFTFLVTSGPFIYTAISVINVLINSKLVRDQTPLILSVKPSFLVPEPRFQVQTVLQFVPPSVDTGFCNFTQSVEKGLMTALFEVRKHQGVYNLTVQIVNVTIGSSRVTPRRGPVNIIFAVKGTHGFLNGSEVSDLLRNLTVVEFSFYLGYPVLQIAEPFQYPQLNLSQLLKSSWVRTVLLGVVERQLHNEVFPAEMERKLAQLLSEVPTRRRMWRRATVSAGNSVVQVVNVSRLEGDDNPVQLIYFVENQDGERLSAAQSSDLINKVDLQRAAIILGYRIQGTIAQPVDRVKRPSPESQSGNLWVVVGVVIPVLVVTVIVVILYWKLCRTDKLDFQPDTVANIQQRQKLQIPSVKGFDFAKQHLGQHNKDDILIIHEPAPLPGPVKDHTTPSENGDVPSPKSKVPSKNIRHRGRVSPSDADSTVSEESSERDAGDKAPATAHESKAHRAPQSGAPLPSSGNEQHSSASIFEHVDRISRTSEASRRVPSKIQLIAMQPIPAPPVQHPVLADRVAETNKINKEIQSALRHKSEIEHHRNKIRLRAKRRGHYEFPVVDDLSSGDTKERHRVYRRAQMQIDKILDPAASVPSVFIEPRKSSRIKRSPKPRRKHQVNGCPADAEKDRLITTDSDGTYKRPPGVHNSAYIGCPSDPDLPADVQTPSSAELSRYPGLPFSASQYIPPQPSIEEARQTMHSLLDDAFALVAPSSQPANALGTGPGVPASLPVNSTPSREERRATQWGSFYSPAQTANNPCSSRYEDYGMTPPSGLLPSRPSFGPGLLPASELVPSEPSQPQSSAEASFAARGIYSEEMPSVVRPRPVGGTTGSQIQHLTQVGIASRIGAQPVEIPPGRGSQYGGPGWPVYGEEEAGRREATHMLGHQEYSSSPLFQVPRTSGREPSAPPGNLTHRGLQGPGLGYPTSSTEDLQPGHSSASLIKAIREELLRLSQKQGSVQNFHS", "length": 1877, "header": "tr|A0A8C2NB10-1|A0A8C2NB10_CRIGR Isoform 1 of UPF0606 protein KIAA1549 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa1549 PE=4 SV=1 CANONICAL=A0A8C2NB10-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3N2/entry", "sequence": { "sequence": "MYSTAHGALSETPGSQPSISVLVLPSPSATTFGTAFLNLRQQTPSMAEHSIFEAHDGSVTSNEVATDDDEMDNFLPDAHWTSSRVVSPIQSITQSPLEPPQEMLEPGMTPSLPTISLQDEVLSGCQNTAQQATVQVESSGDFSTSWSAFLTSEGIIPTPSRSLVLRPTEIHSQLSSKALPETVASLTEGSENLLFSSWITVSQPLGNGVTQQPSVPLWEVSRPLMGVLTTSSDSYPNGTTAWSEHLIEAISLRTHPSVTLSPADPVSISPPSVLFSAPLSSGSFATQSAGISDNPFLSSKAGETLESLYGSRTLSFSDHSHLFNPEASLRPHTWCVSCVVSSAQQALARSLTEKDVDSGNGLETLSVTSGEASRLSPSSSMGAGFSELEDLQEFNTLFPSRPVVSLSSRSVGLWEVSMDMSPEVMSPEVDLSSITTTQVYTSHGHLATPSSLDSTFGFSVTSDLVMPSSMTHLLSSVIPSIHFESSFSLTANQTTPSLPAGNPSLLTSYSLVSSVESVESEVLADQERTSFLEPASGSLLDSTSGFYSAPLLDFSAPAPSRSDVLALPSLTSSDPSTFLSQLFPTMTETFSLSNSIDLQSPQLFVLNPTSLEPSQPWSSSDLLMKTVTLLPSHSEMSPLPSSPLDSLKLDEAWRVSLIESDVHLTSAFSDTTCVFDFSLIPHDSSVSTLVPSSSETSLGISTAGTPLSSLPTVSHLTPILTESSPFSTLTPSDSSVSMTDHHTPVSLMSSSVIPTSTESVSDLYLSASPTLASEVSPSPMPTRPVMGSSLIPTDLPPSTSPEPSSSPEPSMPDISTAPGDTVDSALNSEPMSQNPQGNSVPPPQPSLGPEITSTLEATVGTPALATAKPPYVCDITVPDAYLITTVLARRAVQEYIITSIKEVLRVHFNRAVELKVYELFTDFTFLVTSGPFIYTAISVINVLINSKLVRDQTPLILSVKPSFLVPEPRFQVQTVLQFVPPSVDTGFCNFTQSVEKGLMTALFEVRKHQGVYNLTVQIVNVTIGSSRVTPRRGPVNIIFAVKGTHGFLNGSEVSDLLRNLTVVEFSFYLGYPVLQIAEPFQYPQLNLSQLLKSSWVRTVLLGVVERQLHNEVFPAEMERKLAQLLSEVPTRRRMWRRATVSAGNSVVQVVNVSRLEGDDNPVQLIYFVENQDGERLSAAQSSDLINKVDLQRAAIILGYRIQGTIAQPVDRVKRPSPESQSGNLWVVVGVVIPVLVVTVIVVILYWKLCRTDKLDFQPDTVANIQQRQKLQIPSVKGFDFAKQHLGQHNKDDILIIHEPAPLPGPVKDHTTPSENGDVPSPKSKVPSKNIRHRGRVSPSDADSTVSEESSERDAGDKAPATAHESKAHRAPQSGAPLPSSGNEQHSSASIFEHVDRISRTSEASRRVPSKIQLIAMQPIPAPPVQHPVLADRVAETNKINKEIQSALRHKSEIEHHRNKIRLRAKRRGHYEFPVVDDLSSGDTKERHRVYRRAQMQIDKILDPAASVPSVFIEPRKSSRIKRSPKPRRKHQVNGCPADAEKDRLITTDSDGTYKRPPGVHNSAYIGCPSDPDLPADVQTPSSAELSRYPGLPFSASQYIPPQPSIEEARQTMHSLLDDAFALVAPSSQPANALGTGPGVPASLPVNSTPSREERRATQWGSFYSPAQTANNPCSSRYEDYGMTPPSGLLPSRPSFGPGLLPASELVPSEPSQPQSSAEASFAARGIYSEEMPSVVRPRPVGGTTGSQIQHLTQVGIASRIGAQPVEIPPGRGSQYGGPGWPVYGEEEAGRREAVPRTSGREPSAPPGNLTHRGLQGPGLGYPTSSTEDLQPGHSSASLIKAIREELLRLSQKQGSVQNFHS", "length": 1861, "header": "tr|A0A9J7F3N2-1|A0A9J7F3N2_CRIGR Computationally mapped isoform of UPF0606 protein KIAA1549 homolog isoform X6 OS=Cricetulus griseus OX=10029 GN=Kiaa1549 PE=4 SV=1 CANONICAL=A0A8C2NB10-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6N8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N8/entry", "sequence": { "sequence": "MYSTAHGALSETPGSQPSISVLVLPSPSATTFGTAFLNLRQQTPSMAEHSIFEAHDGSVTSNEVATDDDEMDNFLPDAHWTSSRVVSPIQSITQSPLEPPQEMLEPGMTPSLPTISLQDEVLSGCQNTAQQATVQVESSGDFSTSWSAFLTSEGIIPTPSRSLVLRPTEIHSQLSSKALPETVASLTEGSENLLFSSWITVSQPLGNGVTQQPSVPLWEVSRPLMGVLTTSSDSYPNGTTAWSEHLIEAISLRTHPSVTLSPADPVSISPPSVLFSAPLSSGSFATQSAGISDNPFLSSKAGETLESLYGSRTLSFSDHSHLFNPEASLRPHTWCVSCVVSSAQQALARSLTEKDVDSGNGLETLSVTSGEASRLSPSSSMGAGFSELEDLQEFNTLFPSRPVVSLSSRSVGLWEVSMDMSPEVMSPEVDLSSITTTQVYTSHGHLATPSSLDSTFGFSVTSDLVMPSSMTHLLSSVIPSIHFESSFSLTANQTTPSLPAGNPSLLTSYSLVSSVESVESEVLADQERTSFLEPASGSLLDSTSGFYSAPLLDFSAPAPSRSDVLALPSLTSSDPSTFLSQLFPTMTETFSLSNSIDLQSPQLFVLNPTSLEPSQPWSSSDLLMKTVTLLPSHSEMSPLPSSPLDSLKLDEAWRVSLIESDVHLTSAFSDTTCVFDFSLIPHDSSVSTLVPSSSETSLGISTAGTPLSSLPTVSHLTPILTESSPFSTLTPSDSSVSMTDHHTPVSLMSSSVIPTSTESVSDLYLSASPTLASEVSPSPMPTRPVMGSSLIPTDLPPSTSPEPSSSPEPSMPDISTAPGDTVDSALNSEPMSQNPQGNSVPPPQPSLGPEITSTLEATVGTPALATAKPPYVCDITVPDAYLITTVLARRAVQEYIITSIKEVLRVHFNRAVELKVYELFTDFTFLVTSGPFIYTAISVINVLINSKLVRDQTPLILSVKPSFLVPEPRFQVQTVLQFVPPSVDTGFCNFTQSVEKGLMTALFEVRKHQGVYNLTVQIVNVTIGSSRVTPRRGPVNIIFAVKGTHGFLNGSEVSDLLRNLTVVEFSFYLGYPVLQIAEPFQYPQLNLSQLLKSSWVRTVLLGVVERQLHNEVFPAEMERKLAQLLSEVPTRRRMWRRATVSAGNSVVQVVNVSRLEGDDNPVQLIYFVENQDGERLSAAQSSDLINKVDLQRAAIILGYRIQGTIAQPVDRVKRPSPESQSGNLWVVVGVVIPVLVVTVIVVILYWKLCRTDKLDFQPDTVANIQQRQKLQIPSVKGFDFAKQHLGQHNKDDILIIHEPAPLPGPVKDHTTPSENGDVPSPKSKVPSKNIRHRGRVSPSDADSTVSEESSERDAGDKAPATAHESKAHRAPQSGAPLPSSGNEQHSSASIFEHVDRISRTSEASRRVPSKIQLIAMQPIPAPPVQHPVLADRVAETNKINKEIQSALRHKSEIEHHRNKIRLRAKRRGHYEFPVVDDLSSGDTKERHRVYRRAQMQIDKILDPAASVPSVFIEPRKSSRIKRSPKPRRKHQVNGCPADAEKDRLITTDSDGTYKRPPGVHNSAYIGCPSDPDLPADVQTPSSAELSRYPGLPFSASQYIPPQPSIEEARQTMHSLLDDAFALVAPSSQPANALGTGPGVPASLPVNSTPSREERRATQWGSFYSPAQTANNPCSSRYEDYGMTPPSGLLPRPSFGPGLLPASELVPSEPSQPQSSAEASFAARGIYSEEMPSVVRPRPVGGTTGSQIQHLTQVGIASRIGAQPVEIPPGRGSQYGGPGWPVYGEEEAGRREATHMLGHQEYSSSPLFQVPRTSGREPSAPPGNLTHRGLQGPGLGYPTSSTEDLQPGHSSASLIKAIREELLRLSQKQGSVQNFHS", "length": 1876, "header": "tr|A0A9J7J6N8-1|A0A9J7J6N8_CRIGR Computationally mapped isoform of UPF0606 protein KIAA1549 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Kiaa1549 PE=4 SV=1 CANONICAL=A0A8C2NB10-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1029, "start_aa": "Thr", "end_pos": 1029, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1029", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 158, "start_aa": "Thr", "end_pos": 158, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr158", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1648, "start_aa": "Thr", "end_pos": 1648, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1648", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2NB10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NB10" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2NB10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2NB10" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771392", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771392", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1013, "end_pos": 1015, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1020, "end_pos": 1022, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1049, "end_pos": 1051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1059, "end_pos": 1061, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1086, "end_pos": 1088, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1151, "end_pos": 1153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1646, "end_pos": 1648, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1824, "end_pos": 1826, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 492, "end_pos": 494, "annotation": "n_glycosylation_sequon" }, { "start_pos": 989, "end_pos": 991, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 158, 1029, 1648 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1013, "end_pos": 1015 }, { 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495601" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cryzl1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54", "locus": {} } ], "crossref": [ { "id": "cd05195", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05195", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758122", "url": "https://www.ncbi.nlm.nih.gov/gene/100758122", "database": "GeneID", "categories": [ "Genome 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"OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QC54", "url": "https://www.orthodb.org/?gene=A0A8C2QC54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44461:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44461:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495601", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QC54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QC54-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXW8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K744", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K744", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K744-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K744-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8I8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8I8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKGLYFQQSSTNEEITFLFQERESLPVTEDNFVKLQVKACALSQINTKLLAEMKMEKDFFPVGREVAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVIQVHEHYLVHKPEKVSWTAAAGAIRDGVRACTALYYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQHLERIRPSIARVIDISSGKVHVAESCLEETGGLGVDIVIDAGVRLYSKDDEPAVKSQLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNAQQGKYLCILRDVMEKLSAGIFRPLLDEPIPLYEAKASMEVVQKNQERKKQVVQF", "length": 348, "header": "tr|A0A8C2QC54-1|A0A8C2QC54_CRIGR Isoform 1 of Quinone oxidoreductase-like protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cryzl1 PE=4 SV=1 CANONICAL=A0A8C2QC54-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QC54-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54/entry", "sequence": { "sequence": "MKGLYFQQSSTNEEITFLFQERESLPVTEDNFVKLQVKACALSQINTKLLAEMKMEKDFFPVGREVAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVIQVHEHYLVHKPEKVSWTAAAGAIRDGVRACTALYYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQHLERIRPSIARVIDISSGKVHVAESCLEETGGLGVDIVIDAGVRLYSKDDEPAVKSQLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNAQQGKYLCILRDVMEKLSAGIFRPLLDEPIPLYEAKASMEVVQKNQERKKQVVQF", "length": 348, "header": "tr|A0A8C2QC54-1|A0A8C2QC54_CRIGR Isoform 1 of Quinone oxidoreductase-like protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cryzl1 PE=4 SV=1 CANONICAL=A0A8C2QC54-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXW8/entry", "sequence": { "sequence": "MKGLYFQQSSTNEEITFLFQERESLPVTEDNFVKLQVKACALSQINTKLLAEMKMEKDFFPVGREVAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVIQVHEHYLVHKPEKVSWTAAAGAIRDGVRACTALYYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQHLERIRPSIARVIDISSGKVHVAESCLEETGGLGVDIVIDAGVRLYSKDDEPAVKSQLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNAQQGKYLFTHLKRRDGEVIGWYFQLNRSG", "length": 322, "header": "tr|A0A9J7JXW8-1|A0A9J7JXW8_CRIGR Computationally mapped isoform of Quinone oxidoreductase-like protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cryzl1 PE=4 SV=1 CANONICAL=A0A8C2QC54-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K744-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K744/entry", "sequence": { "sequence": "MKGLYFQQSSTNEEITFLFQERESLPVTEDNFVKLQVKACALSQINTKLLAEMKMEKDFFPVGREVAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVIQVHEHYLVHKPEKVSWTAAAGAIRDGVRACTALYYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQHLERIRPSIARVIDISSGKVHVAESCLEETGGLGVDIVIDAGVRLYSKDDEPAVKSQLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNAQQGKYLCILRDVMEKLSAGIFS", "length": 316, "header": "tr|A0A9J7K744-1|A0A9J7K744_CRIGR Computationally mapped isoform of Quinone oxidoreductase-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cryzl1 PE=4 SV=1 CANONICAL=A0A8C2QC54-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8I8/entry", "sequence": { "sequence": "MKGLYFQQSSTNEEITFLFQERESLPVTEDNFVKLQVKACALSQINTKLLAEMKMEKDFFPVGREVAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVIQVHEHYLVHKPEKVSWTAAAGAIRDGVRACTALYYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQHLERIRPSIARVIDISSGKVHVAESCLEETGGLGVDIVIDAGVRLYSKDDEPAVKSQLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNAQQGKYLFTHLKRRDGEVIGWYFQTAT", "length": 320, "header": "tr|A0A9J7K8I8-1|A0A9J7K8I8_CRIGR Computationally mapped isoform of Quinone oxidoreductase-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cryzl1 PE=4 SV=1 CANONICAL=A0A8C2QC54-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758122", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758122", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "O95825-1", "protein_name": "Ferry endosomal RAB5 effector complex subunit 4", "gene_name": "CRYZL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGLYFQQSSTDEEITFVFQEKEDLPVTEDNFVKLQVKACALSQINTKLLAEMKMKKDLFPVGREIAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVVRVHEHYLVHKPEKVTWTEAAGSIRDGVRAYTALHYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQCLERFRPPIARVIDVSNGKVHVAESCLEETGGLGVDIVLDAGVRLYSKDDEPAVKLQLLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATLAFLNDEVWNLSNVQQGKYLCILKDVMEKLSTGVFRPQLDEPIPLYEAKVSMEAVQKNQGRKKQVVQF", "length": 349 }, "evidence": [ { "id": "A0A8C2QC54", "url": "https://omabrowser.org/oma/group/A0A8C2QC54/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q59A28-1", "protein_name": "Ferry endosomal RAB5 effector complex subunit 4", "gene_name": "CRYZL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKGLYFQQSSTNEEITFVFQERENLPVTEDNYVKLQVKACALSQINTKLLAEMKMEKEFFPVGREVAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEAVRVHEHYLVHKPEKVTWTEAAGTIRDGLRVYTALHYLSHLSPGKSVLIMDGASALGTIAIQLAHHRGAKVISTACSLEDKQFLERFRPPIARVIDVSNGKAHVAESCLEETGGLGVDIVLDAGVRLYSKDDEPAEKLQLLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGAAVAFLNDEVWNLSNVQQGKYLCILKDVMEKLSTGVFRPQLDEPIPLYEAKVTMEVVQKNQGRKKQVVQF", "length": 349 }, "evidence": [ { "id": "A0A8C2QC54", "url": "https://omabrowser.org/oma/group/A0A8C2QC54/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q921W4-1", "protein_name": "Ferry endosomal RAB5 effector complex subunit 4", "gene_name": "Cryzl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGLYFQQSSTNEEVTFVFQEKENVPVTEDNFVRVQVKACALSHINTKLLAEMKMEKDFFPVGREVSGIVLEVGRKVTFFQPDDEVVGILPLDSEDPGLCEVIRVHEHYLVHKPEKVSWTEAAGVIRDGVRACTALYYLSQLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTAHSLEDKQHLERLRPSIARVIDVSNGKVHVAESCLEETGGLGVDIVIDAGVRLYSKDDEPAVKLHLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATVAFLNDEVWNLSNAQQGKYLCILKDVMEKLSAGVFRPLLDEPIPLYEAKVSMEVVQKNQERKKQVVQF", "length": 348 }, "evidence": [ { "id": "A0A8C2QC54", "url": "https://omabrowser.org/oma/group/A0A8C2QC54/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC54", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QC54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC54" }, { "id": "SM00829", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00829" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Enoyl reductase (ER)", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 346, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 290, "end_pos": 292 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QC66-1", "uniprot_ac": "A0A8C2QC66", "uniprot_id": "A0A8C2QC66_CRIGR", "mass": { "chemical_mass": 45154.0, "monoisotopic_mass": 45154.0 }, "refseq": { "ac": "XP_027246654", "name": "magnesium transporter NIPA3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246654" }, "gene_names": [ { "name": "Nipal1", "type": "recommended", "evidence": [ { "id": "A0A8C2QC66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66" } ] }, { "name": "Nipal1", "type": "synonym", "evidence": [ { "id": "XP_027246654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246654" } ] } ], "protein_names": [ { "name": "Magnesium transporter NIPA3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QC66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66/entry#names_and_taxonomy" } ] }, { "name": "magnesium transporter NIPA3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027246654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246654" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246654", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246654" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nipal1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66", "locus": {} } ], "crossref": [ { "id": "100774364", "url": "https://www.ncbi.nlm.nih.gov/gene/100774364", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774364", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774364", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QC66", "url": "https://www.orthodb.org/?gene=A0A8C2QC66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12570", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12570", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12570:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12570:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246654", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246654", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QC66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QC66-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGQLRLPPGEPCREGYVLSLVCSNSSQASCEITNVSQLLPYPVLYTNLNSTITNFSISVNAENKYSLYAGLALAISSSIFIGSSFILKKKGLLQLANKGITRAGEGGHSYLKEWMWWAGLLSMGAGEAANFAAYAFAPATLITPLGALSVLVSAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIVSAISLVLMVLVAPKKGQTNILVYIAICSLIGAFSVSSAKGLGIAIKELLEWKPVYKDPLVFILLAVLILSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMKARDVIGTLSGFFTIINGIFLLHAFKNTDITWSELTSTAKMEVLSPNGSQNSYVLLENADCSALGYDDDVTLFSRTDDQSLHKL", "length": 416, "header": "tr|A0A8C2QC66-1|A0A8C2QC66_CRIGR Isoform 1 of Magnesium transporter NIPA3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nipal1 PE=3 SV=1 CANONICAL=A0A8C2QC66-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QC66-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66/entry", "sequence": { "sequence": "MGGQLRLPPGEPCREGYVLSLVCSNSSQASCEITNVSQLLPYPVLYTNLNSTITNFSISVNAENKYSLYAGLALAISSSIFIGSSFILKKKGLLQLANKGITRAGEGGHSYLKEWMWWAGLLSMGAGEAANFAAYAFAPATLITPLGALSVLVSAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIVSAISLVLMVLVAPKKGQTNILVYIAICSLIGAFSVSSAKGLGIAIKELLEWKPVYKDPLVFILLAVLILSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMKARDVIGTLSGFFTIINGIFLLHAFKNTDITWSELTSTAKMEVLSPNGSQNSYVLLENADCSALGYDDDVTLFSRTDDQSLHKL", "length": 416, "header": "tr|A0A8C2QC66-1|A0A8C2QC66_CRIGR Isoform 1 of Magnesium transporter NIPA3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nipal1 PE=3 SV=1 CANONICAL=A0A8C2QC66-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774364", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774364", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "magnesium ion transmembrane transporter activity", "id": "GO:0015095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015095", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC66", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 35, "end_pos": 37 }, { "start_pos": 379, "end_pos": 381 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 55, "end_pos": 57 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QC72-1", "uniprot_ac": "A0A8C2QC72", "uniprot_id": "A0A8C2QC72_CRIGR", "mass": { "chemical_mass": 33411.0, "monoisotopic_mass": 33411.0 }, "refseq": { "ac": "XP_003511315", "name": "uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511315" }, "gene_names": [ { "name": "Nudt22", "type": "recommended", "evidence": [ { "id": "A0A8C2QC72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72" } ] }, { "name": "Nudt22", "type": "synonym", "evidence": [ { "id": "XP_003511315", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511315" } ] } ], "protein_names": [ { "name": "Uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QC72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72/entry#names_and_taxonomy" } ] }, { "name": "uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003511315", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511315" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615068.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003511315.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511315", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511315" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nudt22", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72", "locus": {} } ], "crossref": [ { "id": "100756578", "url": "https://www.ncbi.nlm.nih.gov/gene/100756578", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756578", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756578", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TCYRDFI", "url": "https://omabrowser.org/oma/group/TCYRDFI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QC72", "url": "https://www.orthodb.org/?gene=A0A8C2QC72", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31835", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31835", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31835:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31835:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003511315", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511315", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QC72-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPEVSLLLLCPPGGLSQEQVAVELSPAHDRRPLPGGDKTITAIWETRLQTQPWIFDAPKFRLHSAILASSSPQPQLLLNLGLTSYRDFLGTNWSSSASWLRQQGATDWGEKQAYLADPLGVGAILVTADDFLVFLRRSQQVAEAPGMVDVPGGHPEPQALCSGGIPQHKDLPGELVVRELFSSVLQEICDEVNVPPHTLSQPLLLGIACNETSAGRASAEFHVQCSLTSEEVRSYYMSGGPEAHESTGIIFVETQRVQRLQETEMWAQLCPSAKGAILLYNRHPPLQSGAGTSRLSHPSVPALSLQL", "length": 308, "header": "tr|A0A8C2QC72-1|A0A8C2QC72_CRIGR Isoform 1 of Uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nudt22 PE=4 SV=1 CANONICAL=A0A8C2QC72-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QC72-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72/entry", "sequence": { "sequence": "MDPEVSLLLLCPPGGLSQEQVAVELSPAHDRRPLPGGDKTITAIWETRLQTQPWIFDAPKFRLHSAILASSSPQPQLLLNLGLTSYRDFLGTNWSSSASWLRQQGATDWGEKQAYLADPLGVGAILVTADDFLVFLRRSQQVAEAPGMVDVPGGHPEPQALCSGGIPQHKDLPGELVVRELFSSVLQEICDEVNVPPHTLSQPLLLGIACNETSAGRASAEFHVQCSLTSEEVRSYYMSGGPEAHESTGIIFVETQRVQRLQETEMWAQLCPSAKGAILLYNRHPPLQSGAGTSRLSHPSVPALSLQL", "length": 308, "header": "tr|A0A8C2QC72-1|A0A8C2QC72_CRIGR Isoform 1 of Uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nudt22 PE=4 SV=1 CANONICAL=A0A8C2QC72-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI3/entry", "sequence": { "sequence": "MDPEVSLLLLCPPGGLSQEQVAVELSPAHDRRPLPGGDKTITAIWETRLQTQPWIFDAPKFRLHSAILASSSPQPQLLLNLGLTSYRDFLGTNWSSSASWLRQQGATDWGEKQAYLADPLGVGAILVTADDFLVFLRRSQQVAEAPGMVDVPGGHPEPQVNVPPHTLSQPLLLGIACNETSAGRASAEFHVQCSLTSEEVRSYYMSGGPEAHESTGIIFVETQRVQRLQETEMWAQLCPSAKGAILLYNRHPPLQSGAGTSRLSHPSVPALSLQL", "length": 275, "header": "tr|A0A9J7JLI3-1|A0A9J7JLI3_CRIGR Computationally mapped isoform of Uridine diphosphate glucose pyrophosphatase NUDT22 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nudt22 PE=4 SV=1 CANONICAL=A0A8C2QC72-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC72" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QCD8-1", "uniprot_ac": "A0A8C2QCD8", "uniprot_id": "A0A8C2QCD8_CRIGR", "mass": { "chemical_mass": 119979.0, "monoisotopic_mass": 119979.0 }, "refseq": { "ac": "XP_003504341", "name": "transport and Golgi organization protein 6 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504341" }, "gene_names": [ { "name": "Tango6", "type": "recommended", "evidence": [ { "id": "A0A8C2QCD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" } ] }, { "name": "Tango6", "type": "synonym", "evidence": [ { "id": "XP_003504341", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504341" } ] } ], "protein_names": [ { "name": "Transport and Golgi organization protein 6 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QCD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8/entry#names_and_taxonomy" } ] }, { "name": "transport and Golgi organization protein 6 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003504341", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504341" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614050.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504341", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504341" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tango6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8", "locus": {} } ], "crossref": [ { "id": "100754699", "url": "https://www.ncbi.nlm.nih.gov/gene/100754699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057407", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057407", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754699", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754699", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QVATLIC", "url": "https://omabrowser.org/oma/group/QVATLIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QCD8", "url": "https://www.orthodb.org/?gene=A0A8C2QCD8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20959", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20959", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20959:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20959:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10304", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10304", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23565", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23565", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25267", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25267", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504341", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504341", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QCD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QCD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPQPAAAAPSGDLETCGLERILEALKLLLSPGGSGSSSLQNTKHDVLLETLKSNLSALEAKFLKDDQWKKLKVLRDEIANKAEWLQNSEDITWSFTSQTLLLLLSLKETMTRLVADFSPDAPNLRTPEAAPALSPDTLSVSQQKTVQSVLQFVVTLGVCPYLMPGVGVPLRYRTEFGAVVQDVVCLEAAPHATRRLYICCRVLLDLAQHASLGSLIFCRHFGDIAAGLCQLGFCPIKRKTPAPVEEVLTEEERTLSRGSLRDILGQVYQPLAVRELLILQGGPPQTCTDVKTQLRCHTPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEATAADWKKCDLIAKILASCPQQSLSPESYYKDICPQILDLFHFQDKLTARQFQRVATTTFITMSSERPELASKYLLQPMLAPLHRCLTTAEIPESDMVPGTILVTEEELSRCVEDVFKLYVVANDPLPVLLDALLPLLGVLFSLYCFTKQSVSHIRSLCQEILLWILVKLERKKAIASLKGFSRLDKAAPSLHPQCQFRAAMHGGIVITIKETTSDDEDEALYQKVSSEQSQMEHLGDLLSHCQQCGLAGDFFIVCLKELSHLVVENEAEVKPMPSCYTSLLELEQYQALLIEDQERKLLVLQLLAVLCERMSEQIFTHITQVVDFVAATLQRACASLAHEAQSTVESQTLSMSMGLVAVMLGGAVQLKSCDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRIAISTHGAFSTEAVSMAAQSTLNKKDPEWKAEEEQQTSYGTSTEVAQNCPEQEQDPPRTSQESTEPSTATSQPPRNVTTQQFQEVLLSAYDPQVPTRAAALRTLSRWVEQREARALEEQKKLLQIFLENLEHEDTFVYLSAIQGVALLSDVYPEEILVDLLAKYDSGKDKHTPETRMKVGEVLIRIVRALGDMVSKYREPLIHTFLRGVKDPDATHRASSLANLGELCQRLDFLLGPVVHEVTACLVAVAKTDSDVQVRRAAIHVVVLLLRGLSQKATEVLSDVLKDLYHLLKHVVRLEPDDVAKLHAQLALEELDEIMRNFLFPPQKLEKKIVVLL", "length": 1084, "header": "tr|A0A8C2QCD8-1|A0A8C2QCD8_CRIGR Isoform 1 of Transport and Golgi organization protein 6 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Tango6 PE=3 SV=1 CANONICAL=A0A8C2QCD8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QCD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8/entry", "sequence": { "sequence": "MAAPQPAAAAPSGDLETCGLERILEALKLLLSPGGSGSSSLQNTKHDVLLETLKSNLSALEAKFLKDDQWKKLKVLRDEIANKAEWLQNSEDITWSFTSQTLLLLLSLKETMTRLVADFSPDAPNLRTPEAAPALSPDTLSVSQQKTVQSVLQFVVTLGVCPYLMPGVGVPLRYRTEFGAVVQDVVCLEAAPHATRRLYICCRVLLDLAQHASLGSLIFCRHFGDIAAGLCQLGFCPIKRKTPAPVEEVLTEEERTLSRGSLRDILGQVYQPLAVRELLILQGGPPQTCTDVKTQLRCHTPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEATAADWKKCDLIAKILASCPQQSLSPESYYKDICPQILDLFHFQDKLTARQFQRVATTTFITMSSERPELASKYLLQPMLAPLHRCLTTAEIPESDMVPGTILVTEEELSRCVEDVFKLYVVANDPLPVLLDALLPLLGVLFSLYCFTKQSVSHIRSLCQEILLWILVKLERKKAIASLKGFSRLDKAAPSLHPQCQFRAAMHGGIVITIKETTSDDEDEALYQKVSSEQSQMEHLGDLLSHCQQCGLAGDFFIVCLKELSHLVVENEAEVKPMPSCYTSLLELEQYQALLIEDQERKLLVLQLLAVLCERMSEQIFTHITQVVDFVAATLQRACASLAHEAQSTVESQTLSMSMGLVAVMLGGAVQLKSCDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRIAISTHGAFSTEAVSMAAQSTLNKKDPEWKAEEEQQTSYGTSTEVAQNCPEQEQDPPRTSQESTEPSTATSQPPRNVTTQQFQEVLLSAYDPQVPTRAAALRTLSRWVEQREARALEEQKKLLQIFLENLEHEDTFVYLSAIQGVALLSDVYPEEILVDLLAKYDSGKDKHTPETRMKVGEVLIRIVRALGDMVSKYREPLIHTFLRGVKDPDATHRASSLANLGELCQRLDFLLGPVVHEVTACLVAVAKTDSDVQVRRAAIHVVVLLLRGLSQKATEVLSDVLKDLYHLLKHVVRLEPDDVAKLHAQLALEELDEIMRNFLFPPQKLEKKIVVLL", "length": 1084, "header": "tr|A0A8C2QCD8-1|A0A8C2QCD8_CRIGR Isoform 1 of Transport and Golgi organization protein 6 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Tango6 PE=3 SV=1 CANONICAL=A0A8C2QCD8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754699", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754699", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYH9-1", "protein_name": "Transport and golgi organization 6 homolog", "gene_name": "Has3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASVQAAAAPSGVLGTCGLEQILEALKLLLSPGGSGSTSLQNTKHDVLLETLKSNLSALEAKFLKDAQWKKLKTLRDEIADKAEWPQSSEDITWSFTSQTLLLLLCLKEIMTRLVAEFNPGKPNPRTPEAAPALSPDTLSVSQQKTFQSVLQFVVTLGVCPYLMPGVGVPLRDRTEFGAVVQGIVRLEAAPHATRRLYICCRVLLDLAQHASLGSLIFCRHFGDIAAGLCQLGFCPTKRKPPVPVEEVLTEEERTLSRQALRDILDQVYQPLAVRELLILQGGSPQSCTDVKTKLRCPAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEATAADWKKCDLIAKILASCPQQSLSPESYYKDICPQILDLFHLQDKLTARQFQRVATTTFTTMLRERPELAPKYLLQPMLAPLHRCSTTAEIPESDMVPGTVLVTEEELSRCVEDVFKVYVVANEPLPVLLDSLLPLLGVFFSLYCFTQQSASHIRSLCQEILLWALVKLERKRAIASLRGFSGLDKAVPALHPQCQFRAATHGGIVITVKEALSDDEDEALYQKVSSEQSQMEHLGDLLLHCQPCGLAGDFFIFCLKELSHLLEENEAEFTPKPPCSTSLLELEQHQTLLIEDQERKLLVLQLLAVLCEKMSEQIFTHITQVVDFVAATLQRACAGLAHEAESTVGSQTLSMAMGLVAAMLGGAVQKPFVGAALKSSDFVVLKQLLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFSTEAVSTAAQSTLNKKDPEQKIKEQRQTSYDASTEGTQNRPEQEQNPLRTGQGSSEPCTATSQPPGNITTEQFREVLLSACDPQVPTRAAALRTLSRWVEQREGRALEEQKKLLQIFLENLEHEDSFVYLSAIQGVALLSDVYPEEILVDLLARYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVKDPDGAHRASSLSNLGELCQRLDFLLGPVVHEVTICLTAVAKTDTDVQVRRAAVHVVVLLLRGLSQKATEMPVQLTTALRVVGTSLFALVVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQSLFAFLEHRRMRRAGRPLKLHCSQRRRSVALCIAAYQEDPEYLRKCLRSAQRIAFPNLKVVMVVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASLQEGMERVRAVVWASTFSCIMQKWGGKREVMYTAFKALGNSVDYIQVCDSDTVLDPACTIEMLRVLEEDPQVGGVGGDVQILNKYDSWISFLSSVRYWMAFNVERACQSYFGCVQCISGPLGMYRNSLLQQFLEDWYHQKFLGSKCSFGDDRHLTNRVLSLGYRTKYTARSKCLTETPTKYLRWLNQQTRWSKSYFREWLYNSLWFHKHHLWMTYESVVTGFFPFFLIATVIQLFYRGRIWNILLFLLTVQLVGIIKATYACFLRGNAEMIFMSLYSLLYMSSLLPAKIFAIATINKSGWGTSGRKTIVVNFIGLIPVSIWVAVLLGGLAYTAYCQDLFSETELAFLVSGAILYGCYWVALLMLYLAIIARRCGKKPEQYSLAFAEV", "length": 1587 }, "evidence": [ { "id": "A0A8C2QCD8", "url": "https://omabrowser.org/oma/group/A0A8C2QCD8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MNM6-1", "protein_name": "Transport and golgi organization 6 homolog", "gene_name": "TANGO6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRRSPVELCASVMAAVSQAASSRVLEKCGLEQILEALKLLLSPGEGSGSNSLQITKHDILLATLKSNLSALEHKFLKDPHWKILKLLRDEIANEAEWPQDSMDVTWHFTSQTLLLLLCLKETMLRLAADFNPGKPNPKTPETAPALSPDTLSVSQQKTVQSVLQFVVTLGVCPYLAPGVGVPLRFRTEFGAVVQDVVCLSAAPSATRRLYTSCSVLLSVAQHASLGSLVFCRHFGDIAAGLCQLGFCPSKRSPLSPEEEVLSEEERALSKKALRDILDQVYQPLAVRELLILQGGPPQSCSEGKMQDRCRAPAWLRRLCGQLLSERLMRPSGVQAVVRGILEGAGAGAAGGSDAEATAADWKKCDLIAKILASCPQQSLSPEDYYRDICPQILDLFHFQDKLAARQFQRVATTTFITMSREQPQLAAKYLLQPMLAPLHRCLNTAEILESDMVPGTILVTEEQLGRCIEDIYKVYVVGNEPLSVLVDSLLPVLGVLFSLYCFTKQSVSHLRSLCQEILLWILGRLERKKAIASLKGFAGLDKSVPALHSLCHFRAATQGGIMITIKEAFCDEDEALYQKVSSEQCRVEHLGGLLSHCQECGLAGDFFIFCLKELTHVAVEDETELKMKSFSNKSLLELEQHQTLLVEGQERKLLVLQLVALLCERMSEQIFTNITQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLEKVSSTYPDPVIQELAADLRITISTHGAFSTEAVSVAAQSTLNKKDPEGKREEQQQTSYERYSDVSHGHLEPQQSHVASHEVREPSTTAKQKSESVTTEELQEALLSAYDPQIPTRAAALRTLSRWIEQREAKVLNMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVYPEKILPGLLAQYDSSKDRHTPETRMKVGEILMRIVRALGDMVSKYREPLIHTFLRGARDPDSAHRASSLSNLGELCQRLDFMLGSVVHEVTACLIAVVKTDHEVQVRRAAIHVIVLLLRGLSQKATEVLRDVLKDLYHLLKHVVCLEPDDVARLHAQLALEELDGIMRNFLFPPQKLEKKITVLP", "length": 1093 }, "evidence": [ { "id": "A0A8C2QCD8", "url": "https://omabrowser.org/oma/group/A0A8C2QCD8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8C3S2-1", "protein_name": "Transport and Golgi organization protein 6 homolog", "gene_name": "Tango6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASGPAAAAPSGVLVTCGLEQVLEALKLLLSPGGSGSSSLQNTKHDVLLQTLKSNLSALEAKFLKDAQWKKLKALRDELADKAEWPQSSEDITWSFTSQTLLLLLCLKEVLARLVADFNPGKPNPRTPEAAPALSPDTLSVSQQKTFQSVLQFVVTLGVCPYLIPGVGVPLRDRTEFGAVVQDVVRLEAAPHATRRLYICCRVLLDLAQHASLGSLIFCRHFGDIAAGLCQLGFCPTKRKPPGPVEEVLTEEERTLSRRALRDILDQVYQPLAVRELLTLQGGPRQPCTDVKTQLRCRAQAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEATAADWRKCDLIAKILASCPQQSLSPESYYKDICPQILDLFHLQDKLTARQFQRVATTTFITLSRERPELAAKYLLQPMLAPLQRCLSTAEIPESDMVPGAILVTEEELSRCVEDVFKVYVVANEPVPVLLDSLLPLLRVFFSLYCFTQQSVSHIRSLCQEILLWILVKLERKKAIASLKGFSGLDKTVPTLHPQCQFRAATHGGIVITAKEAISDDEDEALYQKVSSEQSQVEHLGDLLLHCQQCGLAGDFFIFCLKELSHLLEDREAEFTPKPSCYASLLELEHHQTLLIEDQERKLQVLQLLAVLCEKMSEQIFTHVTQVVDFVAATLQRACAGLAHEAESAVGSQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLERVSNTYPDPVIQELAADLRITISTHGAFSTDAVSTAAQSTLNQKDPGQKIEEQRQTSPDISTEGAQKPPRTGQGSSGPCTATSQPPGSITTQQFREVLLSACDPEVPTRAAALRTLARWVEQREARALEEQKKLLQIFLENLEHEDSFVYLSAIQGIALLSDVYPEEILVDLLAKYDSGKDKHTPETRMKVGEVLMRVVRALGDMVSKYREPLIHTFLRGVRDPDAAHRASSLANLGELCQCLHFLLGPVVHEVTACLIAVAKTDNDVQVRRAAVHVVVLLLRGLSQKATEVLSDVLRDLYHLLKHVVRLEPDDVAKLHAQLALEELDEIMRNFLFPPQKLEKKIVVLP", "length": 1079 }, "evidence": [ { "id": "A0A8C2QCD8", "url": "https://omabrowser.org/oma/group/A0A8C2QCD8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C0B7-1", "protein_name": "Transport and Golgi organization protein 6 homolog", "gene_name": "TANGO6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAARQAVGSGAQETCGLDRILEALKLLLSPGGSGSSSLQVTKHDVLLATLKSNLSALEDKFLKDPQWKNLKLLRDEIADKAEWPQNSVDVTWSFTSQTLLLLLCLKETMIRLAANFNPGKPNPRTPEVAPALSPDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYRTEFGAVVQDVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLLTPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASCPQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPVLAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLGVLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFRVATQGGIMITIKEAISDEDEDEALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLKELTHVASENETELKTEPFSSKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFTNVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAIHVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKNFLFPPQKLEKKIMVLP", "length": 1094 }, "evidence": [ { "id": "A0A8C2QCD8", "url": "https://omabrowser.org/oma/group/A0A8C2QCD8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein secretion", "id": "GO:0009306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009306", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCD8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 823, "end_pos": 825, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QCD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" }, { "id": "PF10363", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10363" }, { "id": "PF10304", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10304" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA polymerase II assembly factor Rtp1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 829, "end_pos": 940, "start_aa": "Phe", "end_aa": "Met", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QCD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" }, { "id": "PF23565", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23565" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TANGO6 HEAT repeat", "eco_id": "ECO_0000259", "start_pos": 316, "end_pos": 589, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QCD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCD8" }, { "id": "PF25267", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25267" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TANGO6 N-terminal", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 315, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 56, "end_pos": 58 }, { "start_pos": 823, "end_pos": 825 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"mass": { "chemical_mass": 43548.0, "monoisotopic_mass": 43548.0 }, "refseq": { "ac": "XP_003511319", "name": "integral membrane protein GPR137 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511319" }, "gene_names": [ { "name": "Gpr137", "type": "recommended", "evidence": [ { "id": "A0A8C2QCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5" } ] }, { "name": "Gpr137", "type": "synonym", "evidence": [ { "id": "XP_003511319", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511319" } ] } ], "protein_names": [ { "name": "Integral membrane protein GPR137 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5/entry#names_and_taxonomy" } ] }, { "name": "integral membrane protein GPR137 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003511319", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511319" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615068.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511319" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCH5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpr137", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5", "locus": {} } ], "crossref": [ { "id": "cd21474", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21474", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757640", "url": "https://www.ncbi.nlm.nih.gov/gene/100757640", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757640", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757640", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YFFDHPG", "url": "https://omabrowser.org/oma/group/YFFDHPG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QCH5", "url": "https://www.orthodb.org/?gene=A0A8C2QCH5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15146", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15146", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15146:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15146:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511319", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QCH5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QCH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPTVTLGLTAAYTALYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTSRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRQRRAQPWVLLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAIGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLTTSRILNGQVFGSRSYFFDRAGHCEDEGCSWEHSRSESTSMSGSLGSGSWYGAIGREPGWGGASQTRTTPLLFSQVPGPGGHHHSLYSTPQT", "length": 396, "header": "tr|A0A8C2QCH5-1|A0A8C2QCH5_CRIGR Isoform 1 of Integral membrane protein GPR137 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gpr137 PE=4 SV=1 CANONICAL=A0A8C2QCH5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QCH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5/entry", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPTVTLGLTAAYTALYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTSRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRQRRAQPWVLLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAIGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLTTSRILNGQVFGSRSYFFDRAGHCEDEGCSWEHSRSESTSMSGSLGSGSWYGAIGREPGWGGASQTRTTPLLFSQVPGPGGHHHSLYSTPQT", "length": 396, "header": "tr|A0A8C2QCH5-1|A0A8C2QCH5_CRIGR Isoform 1 of Integral membrane protein GPR137 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gpr137 PE=4 SV=1 CANONICAL=A0A8C2QCH5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNC7/entry", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPTVTLGLTAAYTALYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTSRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRQRRAQPWVLLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAIGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQTTSRILNGQVFGSRSYFFDRAGHCEDEGCSWEHSRSESTSMSGSLGSGSWYGAIGREPGWGGASQTRTTPLLFSQVPGPGGHHHSLYSTPQT", "length": 353, "header": "tr|A0A9J7FNC7-1|A0A9J7FNC7_CRIGR Computationally mapped isoform of Integral membrane protein GPR137 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gpr137 PE=4 SV=1 CANONICAL=A0A8C2QCH5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCH5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCH5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCH5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757640", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1VA00-1", "protein_name": "G protein-coupled receptor 137", "gene_name": "GPR137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSGSWYGAIGREPGWCGGSQTRTTPLLFSQVLGPGSHHHSLYSTPQT", "length": 395 }, "evidence": [ { "id": "A0A8C2QCH5", "url": "https://omabrowser.org/oma/group/A0A8C2QCH5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q17QQ5-1", "protein_name": "Integral membrane protein GPR137", "gene_name": "GPR137", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANHLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAMLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSSSWYGTIGREPGWCGGSQTRTTPLLFSQVLGPGGHHHSLYSTPQT", "length": 395 }, "evidence": [ { "id": "A0A8C2QCH5", "url": "https://omabrowser.org/oma/group/A0A8C2QCH5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80ZU9-1", "protein_name": "Integral membrane protein GPR137", "gene_name": "Gpr137", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPTVTLGLTAAYTALYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFVQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRQRQAQPWVLLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAIGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAGHCEDEGCSWEHSRSESTSMSGSLGSGSWYGAIGREPGWGGASQTRTTPLLFSQVPGPGSHHHSLYSTPQT", "length": 396 }, "evidence": [ { "id": "A0A8C2QCH5", "url": "https://omabrowser.org/oma/group/A0A8C2QCH5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96N19-1", "protein_name": "Integral membrane protein GPR137", "gene_name": "GPR137", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272068" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCJ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835694", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCJ7", "locus": {} } ], "crossref": [ { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113835694", "url": "https://www.ncbi.nlm.nih.gov/gene/113835694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835694", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QCJ7", "url": "https://www.orthodb.org/?gene=A0A8C2QCJ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272068", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QCJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MICLWVLCLLLLSFSSAYSESWMPLINLTHHLLKNTNSSFSSDCWVCLSIQTQRSLAVPAPLTTWTDSPMKLHMTYSSRTLSGPYPISDLERRLQNFQPLTAHYSFVNPDRRAIALLQLTSLTGILPLLSRITSVRYTDDHIYESAQRPIWGPLSSQTLLSSQAPLCIARFFKNSKYATFVGNLSASLCNYTFHLSPSADHQSIDLSTSYAFAQLMTMPGSKWKNPLRFSGPPSLTSGQSYYPCLVDDIHCHTYPTTPWRQCPSFPSSTCYNLTLFEPDNITHPITLSVDTTYFKIKLQGHKDPYPLFQYQPLMGAALSGQYSIWEYEPTVQENRAITPNIFSHLLSLTYSFCLNSSGVFFLCGSSTYVCLPANWSGVCTLVFQYPDIELLPSNQTVTVPLFATIPSSFSTSRRKRALHLLPLLVGLGITSALGLSIASITTSTIYFQQLSKALSDSLDEIATSVITLQDQIDSLVGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGVVRDAARKLRERASELRPSSSFWIQGLGLGYWLPSWLTSFIGPILFILFLLIFGPCLLNCLTHFVSQRMSSFIQNTTKGHVDKILLLRDSQYKRLPQQPPEEDAV", "length": 617, "header": "tr|A0A8C2QCJ7-1|A0A8C2QCJ7_CRIGR Isoform 1 of Syncytin-A-like OS=Cricetulus griseus OX=10029 GN=LOC113835694 PE=4 SV=1 CANONICAL=A0A8C2QCJ7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QCJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCJ7/entry", "sequence": { "sequence": "MICLWVLCLLLLSFSSAYSESWMPLINLTHHLLKNTNSSFSSDCWVCLSIQTQRSLAVPAPLTTWTDSPMKLHMTYSSRTLSGPYPISDLERRLQNFQPLTAHYSFVNPDRRAIALLQLTSLTGILPLLSRITSVRYTDDHIYESAQRPIWGPLSSQTLLSSQAPLCIARFFKNSKYATFVGNLSASLCNYTFHLSPSADHQSIDLSTSYAFAQLMTMPGSKWKNPLRFSGPPSLTSGQSYYPCLVDDIHCHTYPTTPWRQCPSFPSSTCYNLTLFEPDNITHPITLSVDTTYFKIKLQGHKDPYPLFQYQPLMGAALSGQYSIWEYEPTVQENRAITPNIFSHLLSLTYSFCLNSSGVFFLCGSSTYVCLPANWSGVCTLVFQYPDIELLPSNQTVTVPLFATIPSSFSTSRRKRALHLLPLLVGLGITSALGLSIASITTSTIYFQQLSKALSDSLDEIATSVITLQDQIDSLVGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGVVRDAARKLRERASELRPSSSFWIQGLGLGYWLPSWLTSFIGPILFILFLLIFGPCLLNCLTHFVSQRMSSFIQNTTKGHVDKILLLRDSQYKRLPQQPPEEDAV", "length": 617, "header": "tr|A0A8C2QCJ7-1|A0A8C2QCJ7_CRIGR Isoform 1 of Syncytin-A-like OS=Cricetulus griseus OX=10029 GN=LOC113835694 PE=4 SV=1 CANONICAL=A0A8C2QCJ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286478" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCN6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774695", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCN6", "locus": {} } ], "crossref": [ { "id": "100774695", "url": "https://www.ncbi.nlm.nih.gov/gene/100774695", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774695", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774695", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QCN6", "url": "https://www.orthodb.org/?gene=A0A8C2QCN6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14119:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14119:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286478", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QCN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QCN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAARASLGRILPESCILFLCDMQEKLRGKVLYFPQIVSMAARMLKVARLLDVPVLLTEQYPQGLGPTVPELGAQGLQAMSKTCFSMVPPLQQELDKRPQLRSVLLCGLETQGCILHTALDLLDRGLQVHVAVDACSSRSELNRLVALDRMRQSGVFLSTSEVLILQLVKDAAHPQFKEIQKIIKEPVPDIGLLSFFQGKSNPLLLDSRP", "length": 210, "header": "tr|A0A8C2QCN6-1|A0A8C2QCN6_CRIGR Isoform 1 of Isochorismatase domain-containing protein 2B isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774695 PE=3 SV=1 CANONICAL=A0A8C2QCN6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QCN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCN6/entry", "sequence": { "sequence": "MAAARASLGRILPESCILFLCDMQEKLRGKVLYFPQIVSMAARMLKVARLLDVPVLLTEQYPQGLGPTVPELGAQGLQAMSKTCFSMVPPLQQELDKRPQLRSVLLCGLETQGCILHTALDLLDRGLQVHVAVDACSSRSELNRLVALDRMRQSGVFLSTSEVLILQLVKDAAHPQFKEIQKIIKEPVPDIGLLSFFQGKSNPLLLDSRP", "length": 210, "header": "tr|A0A8C2QCN6-1|A0A8C2QCN6_CRIGR Isoform 1 of Isochorismatase domain-containing protein 2B isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774695 PE=3 SV=1 CANONICAL=A0A8C2QCN6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI54/entry", "sequence": { "sequence": "MAAARASLGRILPESCILFLCDMQEKLRGKVLYFPQIVSMAARMLKVARLLDVPVLLTEQYPQGLGPTVPELGAQGLQAMSKTCFSMVPPLQQELDKRPQLRSVLLCGLETQGCILHTALDLLDRGLQVHVAVDACSSRSELNRLVALDRMRQSGVFLSTSEVLILQLVKDAAHPQFKERPEEGTGFPALEI", "length": 192, "header": "tr|A0A9J7GI54-1|A0A9J7GI54_CRIGR Computationally mapped isoform of Isochorismatase domain-containing protein 2B isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100774695 PE=3 SV=1 CANONICAL=A0A8C2QCN6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 68, "start_aa": "Thr", "end_pos": 68, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr68", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCN6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCN6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774695", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774695", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QCN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCN6" }, { "id": "PF00857", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00857" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Isochorismatase-like", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 162, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 68 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "P47961-1", "uniprot_ac": "P47961", "uniprot_id": "RS4_CRIGR", "mass": { "chemical_mass": 29588.0, "monoisotopic_mass": 29588.0 }, "refseq": { "ac": "NP_001233602", "name": "small ribosomal subunit protein eS4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233602" }, "gene_names": [ { "name": "RPS4", "type": "recommended", "evidence": [ { "id": "P47961", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47961" } ] }, { "name": "Rps4x", "type": "synonym", "evidence": [ { "id": "NP_001233602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233602" } ] }, { "name": "Rps4", "type": "synonym", "evidence": [ { "id": "NP_001233602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233602" } ] } ], 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"id": "IPR002942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041982", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041982", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100689408", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689408", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHIQLNL", "url": "https://omabrowser.org/oma/group/GHIQLNL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "P47961", "url": "https://www.orthodb.org/?gene=P47961", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11581", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11581", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11581:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11581:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00900", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00900", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16121", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16121", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001233602", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "P47961", "url": "https://www.uniprot.org/uniprotkb/P47961", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P47961-1", "url": "https://www.uniprot.org/uniprotkb/P47961-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG", "length": 263, "header": "sp|P47961-1|RS4_CRIGR Isoform 1 of Small ribosomal subunit protein eS4 OS=Cricetulus griseus OX=10029 GN=RPS4 PE=2 SV=2 CANONICAL=P47961-1" }, "isoforms": [ { "isoform_ac": "P47961-1", "url": "https://www.uniprot.org/uniprotkb/P47961/entry#P47961-1", "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG", "length": 263, "header": "sp|P47961-1|RS4_CRIGR Isoform 1 of Small ribosomal subunit protein eS4 OS=Cricetulus griseus OX=10029 GN=RPS4 PE=2 SV=2 CANONICAL=P47961-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100689408", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689408", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P0CX35-1", "protein_name": "Small ribosomal subunit protein eS4A", "gene_name": "RPS4A", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRAQQGL", "length": 261 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX36-1", "protein_name": "Small ribosomal subunit protein eS4B", "gene_name": "RPS4B", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRAQQGL", "length": 261 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41042-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "RpS4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAKTH", "length": 261 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P47836-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "RPS4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG", "length": 263 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG", "length": 263 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62702-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "Rps4x", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG", "length": 263 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P62703-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "Rps4x", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG", "length": 263 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P79103-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "RPS4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG", "length": 263 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q642H9-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "rps4x", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKRLAAKQSSS", "length": 263 }, "evidence": [ { "id": "P47961", "url": "https://omabrowser.org/oma/group/P47961/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "P47961", "url": "https://www.uniprot.org/uniprotkb/P47961" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "P47961", "url": "https://www.uniprot.org/uniprotkb/P47961" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "P47961", "url": "https://www.uniprot.org/uniprotkb/P47961" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic small ribosomal subunit", "id": "GO:0022627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022627", "evidence": [ { "database": "UniProtKB", "id": "P47961", "url": "https://www.uniprot.org/uniprotkb/P47961" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q6DQX6-1", "uniprot_ac": "Q6DQX6", "uniprot_id": "NDUBB_CRIGR", "mass": { "chemical_mass": 17485.0, "monoisotopic_mass": 17485.0 }, "refseq": { "ac": "NP_001233718", "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" }, "gene_names": [ { "name": "NDUFB11", "type": "recommended", "evidence": [ { "id": "Q6DQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6" } ] }, { "name": "CI-ESSS", "type": "synonym", "evidence": [ { "id": "NP_001233718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" } ] }, { "name": "Ndufb11", "type": "synonym", "evidence": [ { "id": "NP_001233718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "type": "recommended", "evidence": [ { "id": "Q6DQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6/entry#names_and_taxonomy" } ] }, { "name": "CI-ESSS", "type": "synonym", "evidence": [ { "id": "Q6DQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6/entry#names_and_taxonomy" } ] }, { "name": "Complex I-ESSS", "type": "synonym", "evidence": [ { "id": "NP_001233718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" }, { "id": "Q6DQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa", "type": "synonym", "evidence": [ { "id": "NP_001233718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" } ] }, { "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "type": "synonym", "evidence": [ { "id": "NP_001233718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" } ] }, { "name": "NADH-ubiquinone oxidoreductase ESSS subunit", "type": "synonym", "evidence": [ { "id": "Q6DQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial NADH-ubiquinone oxidoreductase ESSS subunit", "type": "synonym", "evidence": [ { "id": "NP_001233718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" } ] } ], "function": [ { "annotation": "##Evidence-Data-START## Transcript exon combination :: AY649405.1, JI883463.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04275183, SAMN04501027 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY649405.1.", "evidence": [ { "database": "RefSeq", "id": "NP_001233718", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718" } ] }, { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "Q6DQX6", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6#function" }, { "database": "UniProtKB", "id": "Q9NX14", "url": "https://www.uniprot.org/uniprotkb/Q9NX14#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "Q6DQX6", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "NDUFB11", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6", "locus": {} } ], "crossref": [ { "id": "Q6DQX6", "url": "https://alphafold.ebi.ac.uk/entry/Q6DQX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100689361", "url": "https://www.ncbi.nlm.nih.gov/gene/100689361", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100689361", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689361", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DYRMKEW", "url": "https://omabrowser.org/oma/group/DYRMKEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "Q6DQX6", "url": "https://www.orthodb.org/?gene=Q6DQX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13327", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13327", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13327:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13327:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10183", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10183", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001233718", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "Q6DQX6", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q6DQX6-1", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARLLSLCARRLSVTAAVRGLPAAGVRWESSRAVISPSTVERKRQRQPTMHWQEDPESEDENVYAKNPDFHGYDQDPVVDVWNMRVVFFFGFSIVLVLGTTFMAYLPDYRMQEWARREAERLVKYREANGLPIMESNCFDPSKIQLPEDE", "length": 151, "header": "sp|Q6DQX6-1|NDUBB_CRIGR Isoform 1 of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial OS=Cricetulus griseus OX=10029 GN=NDUFB11 PE=2 SV=1 CANONICAL=Q6DQX6-1" }, "isoforms": [ { "isoform_ac": "Q6DQX6-1", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6/entry#Q6DQX6-1", "sequence": { "sequence": "MAARLLSLCARRLSVTAAVRGLPAAGVRWESSRAVISPSTVERKRQRQPTMHWQEDPESEDENVYAKNPDFHGYDQDPVVDVWNMRVVFFFGFSIVLVLGTTFMAYLPDYRMQEWARREAERLVKYREANGLPIMESNCFDPSKIQLPEDE", "length": 151, "header": "sp|Q6DQX6-1|NDUBB_CRIGR Isoform 1 of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial OS=Cricetulus griseus OX=10029 GN=NDUFB11 PE=2 SV=1 CANONICAL=Q6DQX6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The role of the ESSS protein in the assembly of a functional and stable mammalian mitochondrial complex I (NADH-ubiquinone oxidoreductase).", "journal": "Eur. J. Biochem.", "date": "2004", "authors": "Potluri Prasanth, Yadava Nagendra, Scheffler Immo E", "evidence": [ { "database": "UniProtKB", "id": "Q6DQX6", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6" } ], "reference": [ { "type": "PubMed", "id": "15265046", "url": "https://glygen.org/publication/PubMed/15265046" } ] } ], "pathway": [ { "id": "cge:100689361", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689361", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A7L4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "Ndufb11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAARLLSLYARRLSVAAAIREVPAARVRWESSRAVIAPSGVERKRQREPTMVWQEDPEPEDENLYAKNPDFHGYDSDPVVDVWNMRAVFFFGFSIVLVFGTTFVAYLPDYRMQEWARREAERLVKYRELNGLPIMESNYFDPSKIQLPEDD", "length": 151 }, "evidence": [ { "id": "Q6DQX6", "url": "https://omabrowser.org/oma/group/Q6DQX6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O09111-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "Ndufb11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAARLLSLYGRCLSAAGAMRGLPAARVRWESSRAVIAPSGVEKKRQREPTMQWQEDPEPEDENVYAKNPDFHGYDSDPVVDVWNMRAVFFFGFSIVLVFGTTFVAYVPDYRMQEWARREAERLVKYREVNGLPIMESNYFDPSKIQLPEDD", "length": 151 }, "evidence": [ { "id": "Q6DQX6", "url": "https://omabrowser.org/oma/group/Q6DQX6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8HXG5-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "NDUFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAARMLGLCGRRLLAVAATRGLPAARVRWESSSSRAVIAPSTLAGKRPSEPTLRWQEDPEPEDENLYEKNPDSHGYDKDPAVDIWNMRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREAHGLPIMESNCFDPSKIQLPEDED", "length": 154 }, "evidence": [ { "id": "Q6DQX6", "url": "https://omabrowser.org/oma/group/Q6DQX6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9NX14-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "NDUFB11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRMKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE", "length": 153 }, "evidence": [ { "id": "Q6DQX6", "url": "https://omabrowser.org/oma/group/Q6DQX6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "Q6DQX6", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "Q6DQX6", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "respiratory electron transport chain", "id": "GO:0022904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022904", "evidence": [ { "database": "UniProtKB", "id": "Q6DQX6", "url": "https://www.uniprot.org/uniprotkb/Q6DQX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "Q6TMK8-1", "uniprot_ac": "Q6TMK8", "uniprot_id": "PLD3B_CRIGR", "mass": { "chemical_mass": 21532.0, "monoisotopic_mass": 21532.0 }, "refseq": { "ac": "NP_001233714", "name": "PRELI domain containing protein 3B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714" }, "gene_names": [ { "name": "PRELID3B", "type": "recommended", "evidence": [ { "id": "Q6TMK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8" } ] }, { "name": "Prelid3b", "type": "synonym", "evidence": [ { "id": "NP_001233714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714" } ] }, { "name": "SLMO2", "type": "synonym", "evidence": [ { "id": "Q6TMK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8" } ] }, { "name": "Slmo2", "type": "synonym", "evidence": [ { "id": "NP_001233714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714" } ] } ], "protein_names": [ { "name": "PRELI domain containing protein 3B", "type": "recommended", "evidence": [ { "id": "Q6TMK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8/entry#names_and_taxonomy" } ] }, { "name": "BCR/ABL-regulated protein", "type": "synonym", "evidence": [ { "id": "NP_001233714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714" }, { "id": "Q6TMK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8/entry#names_and_taxonomy" } ] }, { "name": "PRELI domain containing protein 3B", "type": "synonym", "evidence": [ { "id": "NP_001233714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714" } ] }, { "name": "Protein slowmo homolog 2", "type": "synonym", "evidence": [ { "id": "NP_001233714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714" }, { "id": "Q6TMK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8/entry#names_and_taxonomy" } ] }, { "name": "Protein slowmo-like 2", "type": "synonym", "evidence": [ { "id": "NP_001233714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "Q6TMK8", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "PRELID3B", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8", "locus": {} } ], "crossref": [ { "id": "Q6TMK8", "url": "https://alphafold.ebi.ac.uk/entry/Q6TMK8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100689354", "url": "https://www.ncbi.nlm.nih.gov/gene/100689354", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100689354", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689354", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "Q6TMK8", "url": "https://www.orthodb.org/?gene=Q6TMK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001233714", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233714", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "Q6TMK8", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q6TMK8-1", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIWTSEHVFDHPWEMVTTAAMQKYPNPMNPSVVGVDVLDRHVDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVKKTMELKSTNISFTNMVSVDERLTYKPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEDLAASARGSIRTPMAAAAALVEK", "length": 195, "header": "sp|Q6TMK8-1|PLD3B_CRIGR Isoform 1 of PRELI domain containing protein 3B OS=Cricetulus griseus OX=10029 GN=PRELID3B PE=2 SV=1 CANONICAL=Q6TMK8-1" }, "isoforms": [ { "isoform_ac": "Q6TMK8-1", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8/entry#Q6TMK8-1", "sequence": { "sequence": "MKIWTSEHVFDHPWEMVTTAAMQKYPNPMNPSVVGVDVLDRHVDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVKKTMELKSTNISFTNMVSVDERLTYKPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEDLAASARGSIRTPMAAAAALVEK", "length": 195, "header": "sp|Q6TMK8-1|PLD3B_CRIGR Isoform 1 of PRELI domain containing protein 3B OS=Cricetulus griseus OX=10029 GN=PRELID3B PE=2 SV=1 CANONICAL=Q6TMK8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 46, "end_pos": 46, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6TMK8", "url": "https://www.uniprot.org/uniprotkb/Q6TMK8" } ], "site_lbl": "Ser46" }, { "start_pos": 51, "end_pos": 51, "kinase_uniprot_canonical_ac": "", 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"graph_view": "yes" } }, { "uniprot_canonical_ac": "Q9WU08-1", "uniprot_ac": "Q9WU08", "uniprot_id": "NDUA1_CRIGR", "mass": { "chemical_mass": 8167.0, "monoisotopic_mass": 8167.0 }, "refseq": { "ac": "NP_001233690", "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" }, "gene_names": [ { "name": "NDUFA1", "type": "recommended", "evidence": [ { "id": "Q9WU08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9WU08" } ] }, { "name": "CI-MWFE", "type": "synonym", "evidence": [ { "id": "NP_001233690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" } ] }, { "name": "Ndufa1", "type": "synonym", "evidence": [ { "id": "NP_001233690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "type": "recommended", "evidence": [ { "id": "Q9WU08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9WU08/entry#names_and_taxonomy" } ] }, { "name": "CI-MWFE", "type": "synonym", "evidence": [ { "id": "Q9WU08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9WU08/entry#names_and_taxonomy" } ] }, { "name": "Complex I-MWFE", "type": "synonym", "evidence": [ { "id": "NP_001233690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" }, { "id": "Q9WU08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9WU08/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa", "type": "synonym", "evidence": [ { "id": "NP_001233690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" } ] }, { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "type": "synonym", "evidence": [ { "id": "NP_001233690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" } ] }, { "name": "NADH ubiquinone oxidoreductase NDUFA1", "type": "synonym", "evidence": [ { "id": "NP_001233690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" } ] }, { "name": "NADH-ubiquinone oxidoreductase MWFE subunit", "type": "synonym", "evidence": [ { "id": "NP_001233690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" }, { "id": "Q9WU08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9WU08/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Evidence-Data-START## Transcript exon combination :: AF100706.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04275174, SAMN04275175 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF100706.1.", "evidence": [ { "database": "RefSeq", "id": "NP_001233690", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690" } ] }, { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "Q9WU08", "url": "https://www.uniprot.org/uniprotkb/Q9WU08#function" }, { "database": "UniProtKB", "id": "O15239", "url": "https://www.uniprot.org/uniprotkb/O15239#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "Q9WU08", "url": "https://www.uniprot.org/uniprotkb/Q9WU08" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "NDUFA1", "url": "https://www.uniprot.org/uniprotkb/Q9WU08", "locus": {} } ], "crossref": [ { "id": "Q9WU08", "url": "https://alphafold.ebi.ac.uk/entry/Q9WU08", "database": "AlphaFoldDB", "categories": [] }, { "id": "100689328", "url": "https://www.ncbi.nlm.nih.gov/gene/100689328", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100689328", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689328", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "Q9WU08", "url": "https://www.orthodb.org/?gene=Q9WU08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17098", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17098", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17098:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17098:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15879", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15879", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001233690", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001233690", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "Q9WU08", "url": "https://www.uniprot.org/uniprotkb/Q9WU08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9WU08-1", "url": "https://www.uniprot.org/uniprotkb/Q9WU08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWFEILPGLAVMGVCLVIPGVATAYIHKYTNGGKEKRVGRLRYQWYLMERDRRVSGVNRYYVSRGLENID", "length": 70, "header": "sp|Q9WU08-1|NDUA1_CRIGR Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cricetulus griseus OX=10029 GN=NDUFA1 PE=3 SV=1 CANONICAL=Q9WU08-1" }, "isoforms": [ { "isoform_ac": "Q9WU08-1", "url": "https://www.uniprot.org/uniprotkb/Q9WU08/entry#Q9WU08-1", "sequence": { "sequence": "MWFEILPGLAVMGVCLVIPGVATAYIHKYTNGGKEKRVGRLRYQWYLMERDRRVSGVNRYYVSRGLENID", "length": 70, "header": "sp|Q9WU08-1|NDUA1_CRIGR Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cricetulus griseus OX=10029 GN=NDUFA1 PE=3 SV=1 CANONICAL=Q9WU08-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The NDUFA1 gene product (MWFE protein) is essential for activity of complex I in mammalian mitochondria.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1999", "authors": "Au H C, Seo B B, Matsuno-Yagi A, Yagi T, Scheffler I E", "evidence": [ { "database": "UniProtKB", "id": "Q9WU08", "url": "https://www.uniprot.org/uniprotkb/Q9WU08" } ], "reference": [ { "type": "PubMed", "id": "10200266", "url": "https://glygen.org/publication/PubMed/10200266" } ] } ], "pathway": [ { "id": "cge:100689328", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689328", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "Q9WU08", "url": "https://www.uniprot.org/uniprotkb/Q9WU08" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "Q9WU08", 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The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel. As part of the LSU, it is probably required for its formation and the maturation of rRNAs. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271903" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QCR6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCR6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Castor2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCR6", "locus": {} } ], "crossref": [ { "id": "100768347", "url": "https://www.ncbi.nlm.nih.gov/gene/100768347", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768347", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768347", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QCR6", "url": "https://www.orthodb.org/?gene=A0A8C2QCR6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31131", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31131", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31131:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31131:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13840", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13840", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18700", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18700", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21389", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21389", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271903", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QCR6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QCR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGFLELPSSEHLSVADATWLALNVVSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLSVTNGFVKPKMVKRPVIHPLSSPSNRFCVTSLDPDTLPAVTTLLMDVMFYSNGVKDPMAASDDCGHIRFFSFSLIEGYISLVMDVQTQQRFPSHLLFTSASGELWKMVRIGGQPLGFDECGIVAQISEPLAAADIPAYYISTFKFDHALVPEENISGVIHALKVSQGGKH", "length": 329, "header": "tr|A0A8C2QCR6-1|A0A8C2QCR6_CRIGR Isoform 1 of Cytosolic arginine sensor for mTORC1 subunit 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Castor2 PE=3 SV=1 CANONICAL=A0A8C2QCR6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QCR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCR6/entry", "sequence": { "sequence": "MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGFLELPSSEHLSVADATWLALNVVSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLSVTNGFVKPKMVKRPVIHPLSSPSNRFCVTSLDPDTLPAVTTLLMDVMFYSNGVKDPMAASDDCGHIRFFSFSLIEGYISLVMDVQTQQRFPSHLLFTSASGELWKMVRIGGQPLGFDECGIVAQISEPLAAADIPAYYISTFKFDHALVPEENISGVIHALKVSQGGKH", "length": 329, "header": "tr|A0A8C2QCR6-1|A0A8C2QCR6_CRIGR Isoform 1 of Cytosolic arginine sensor for mTORC1 subunit 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Castor2 PE=3 SV=1 CANONICAL=A0A8C2QCR6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QD26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD26" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QD26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD26" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752062", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752062", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QD26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD26" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "trace-amine receptor activity", "id": "GO:0001594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001594", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QD26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QD26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD26" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 326, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 24 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QD60-1", "uniprot_ac": "A0A8C2QD60", "uniprot_id": "A0A8C2QD60_CRIGR", "mass": { "chemical_mass": 58686.0, "monoisotopic_mass": 58686.0 }, "refseq": { "ac": "XP_007640576", "name": "nucleolar complex protein 4 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640576" }, "gene_names": [ { "name": "Noc4l", "type": "recommended", "evidence": [ { "id": "A0A8C2QD60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD60" } ] }, { "name": "Noc4l", "type": "synonym", "evidence": [ { "id": "XP_007640576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640576" } ] } ], "protein_names": [ { "name": "Nucleolar complex protein 4 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QD60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD60/entry#names_and_taxonomy" } ] }, { "name": "nucleolar complex protein 4 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007640576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640576" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 117 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613859.1) and transcript sequence (JP059771.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007640576.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640576", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640576" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QD60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD60" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Noc4l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD60", "locus": {} } ], "crossref": [ { "id": "100773506", "url": "https://www.ncbi.nlm.nih.gov/gene/100773506", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027193", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027193", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773506", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773506", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QD60", "url": "https://www.orthodb.org/?gene=A0A8C2QD60", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12455", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12455", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12455:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12455:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26702", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26702", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007640576", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640576", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QD60", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QD60-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRLPASAGSRGELGRLLQAVLTSRGQANAVFDILAVLQSEDPEDIQEGVRTCSRLFGTLLEREELFVGSLPREDTVLAGSQEATHKYKVWMRHRYHSCCNRLEELLTHPSFQVKELALKTLMKFVQLEGAKPLEKPQWESHYLFPRTLFRAVVGGLLTPEEDHSLLISQFCEYLEYDDIRYHTMQVATSTVARTTSQQPEVSLTFWNNAFVLLSAVNLPLQECNLTNFYVKHAQTSDKWKVIHLKEHRKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAISLLALNGLFILIHKHNLEYPDFYQKLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVMVHRPQGPELSADPYDPMEKDPARSHALESCLWELQALQQHYHPEVSRAASVINQVLSDPEVSIAPLLELTAYEIFERDLKKKTPGSVPLEFIPAKGLLGRQDDLCAQFFTLS", "length": 516, "header": "tr|A0A8C2QD60-1|A0A8C2QD60_CRIGR Isoform 1 of Nucleolar complex protein 4 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Noc4l PE=3 SV=1 CANONICAL=A0A8C2QD60-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QD60-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QD60/entry", "sequence": { "sequence": "MDRLPASAGSRGELGRLLQAVLTSRGQANAVFDILAVLQSEDPEDIQEGVRTCSRLFGTLLEREELFVGSLPREDTVLAGSQEATHKYKVWMRHRYHSCCNRLEELLTHPSFQVKELALKTLMKFVQLEGAKPLEKPQWESHYLFPRTLFRAVVGGLLTPEEDHSLLISQFCEYLEYDDIRYHTMQVATSTVARTTSQQPEVSLTFWNNAFVLLSAVNLPLQECNLTNFYVKHAQTSDKWKVIHLKEHRKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAISLLALNGLFILIHKHNLEYPDFYQKLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVMVHRPQGPELSADPYDPMEKDPARSHALESCLWELQALQQHYHPEVSRAASVINQVLSDPEVSIAPLLELTAYEIFERDLKKKTPGSVPLEFIPAKGLLGRQDDLCAQFFTLS", "length": 516, "header": "tr|A0A8C2QD60-1|A0A8C2QD60_CRIGR Isoform 1 of Nucleolar complex protein 4 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Noc4l PE=3 SV=1 CANONICAL=A0A8C2QD60-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613922.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502930", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502930" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDE6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpr87", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE6", "locus": {} } ], "crossref": [ { "id": "cd15969", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15969", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770345", "url": "https://www.ncbi.nlm.nih.gov/gene/100770345", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770345", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770345", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VVYINTC", "url": "https://omabrowser.org/oma/group/VVYINTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QDE6", "url": "https://www.orthodb.org/?gene=A0A8C2QDE6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24233", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24233", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24233:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24233:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502930", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502930", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QDE6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QDE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLNLTLARLPSNELYSQASHSANSTSVGRWKNSTHHNEFDTIILPVLYLVIFVASILLNGLAVWIFFHIRNKTSFIFYLKNIVVADLIMTMTFPFRIVRDSGFGPWYIEFILCRYTSVLFYANMYTSIVFLGLISVDRYLKVVKPFGDSRMYSITFTKVLSICVWVVMAVLSLPNIILTNGQPTKENIHDCMKLKNPLGAKWHMAVTYVDSCLFVAVLVILIGCYIAISRYIHKSSRQFISQSSRKRKHNQSIRVVVAVFFTCFLPYHLCRIPFTFSHLDRLLDESAHKILYYCKEMTLFLSACNVCLDPIIYFFMCRSFSRRLFKKSNIRTRSESIRSLQSVRRSEVRIYYDYTDV", "length": 358, "header": "tr|A0A8C2QDE6-1|A0A8C2QDE6_CRIGR Isoform 1 of G-protein coupled receptor 87 OS=Cricetulus griseus OX=10029 GN=Gpr87 PE=3 SV=1 CANONICAL=A0A8C2QDE6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QDE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE6/entry", "sequence": { "sequence": "MGLNLTLARLPSNELYSQASHSANSTSVGRWKNSTHHNEFDTIILPVLYLVIFVASILLNGLAVWIFFHIRNKTSFIFYLKNIVVADLIMTMTFPFRIVRDSGFGPWYIEFILCRYTSVLFYANMYTSIVFLGLISVDRYLKVVKPFGDSRMYSITFTKVLSICVWVVMAVLSLPNIILTNGQPTKENIHDCMKLKNPLGAKWHMAVTYVDSCLFVAVLVILIGCYIAISRYIHKSSRQFISQSSRKRKHNQSIRVVVAVFFTCFLPYHLCRIPFTFSHLDRLLDESAHKILYYCKEMTLFLSACNVCLDPIIYFFMCRSFSRRLFKKSNIRTRSESIRSLQSVRRSEVRIYYDYTDV", "length": 358, "header": "tr|A0A8C2QDE6-1|A0A8C2QDE6_CRIGR Isoform 1 of G-protein coupled receptor 87 OS=Cricetulus griseus OX=10029 GN=Gpr87 PE=3 SV=1 CANONICAL=A0A8C2QDE6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDE6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770345", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770345", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AN17-1", "protein_name": "G protein-coupled receptor 87", "gene_name": "GPR87", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": 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"A0A8C2QDE7", "uniprot_id": "A0A8C2QDE7_CRIGR", "mass": { "chemical_mass": 18516.0, "monoisotopic_mass": 18516.0 }, "refseq": { "ac": "XP_027282927", "name": "transmembrane protein 220 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282927" }, "gene_names": [ { "name": "Tmem220", "type": "recommended", "evidence": [ { "id": "A0A8C2QDE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7" } ] }, { "name": "Tmem220", "type": "synonym", "evidence": [ { "id": "XP_027282927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282927" } ] } ], "protein_names": [ { "name": "Transmembrane protein 220 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A8C2QDE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 220 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027282927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282927" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282927", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282927" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDE7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem220", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7", "locus": {} } ], "crossref": [ { "id": "100770411", "url": "https://www.ncbi.nlm.nih.gov/gene/100770411", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770411", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770411", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QDE7", "url": "https://www.orthodb.org/?gene=A0A8C2QDE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34262", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34262", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34262:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34262:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282927", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282927", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QDE7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QDE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDS8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALAVASWAPGLWRACNALMAAFFALAAVVQVNDPDAEFWVVVYMIPAVLTLLVGFNPLVTGNFVWKSVSVIHMLFCVLWAGNLAYHFLLHAQQSILNEEEGRELSGLVIITAWMALCHSSAKNPVGGRMHLTIAVVIALFPLISWVYVYMNKEMRASWPTHCKTVI", "length": 167, "header": "tr|A0A8C2QDE7-1|A0A8C2QDE7_CRIGR Isoform 1 of Transmembrane protein 220 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem220 PE=4 SV=1 CANONICAL=A0A8C2QDE7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QDE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7/entry", "sequence": { "sequence": "MALAVASWAPGLWRACNALMAAFFALAAVVQVNDPDAEFWVVVYMIPAVLTLLVGFNPLVTGNFVWKSVSVIHMLFCVLWAGNLAYHFLLHAQQSILNEEEGRELSGLVIITAWMALCHSSAKNPVGGRMHLTIAVVIALFPLISWVYVYMNKEMRASWPTHCKTVI", "length": 167, "header": "tr|A0A8C2QDE7-1|A0A8C2QDE7_CRIGR Isoform 1 of Transmembrane protein 220 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem220 PE=4 SV=1 CANONICAL=A0A8C2QDE7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDS8/entry", "sequence": { "sequence": "MALAVASWAPGLWRACNALMAAFFALAAVVQVNDPDAEFWVVVYMIPAVLTLLVGFNPLVTGNFVWKSVSVIHMLFCVLWAGNLAYHFLLHAQQSILNEEEGRNPVGGRMHLTIAVVIALFPLISWVYVYMNKEMRASWPTHCKTVI", "length": 147, "header": "tr|A0A9J7GDS8-1|A0A9J7GDS8_CRIGR Computationally mapped isoform of Transmembrane protein 220 isoform X6 OS=Cricetulus griseus OX=10029 GN=Tmem220 PE=4 SV=1 CANONICAL=A0A8C2QDE7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVM9/entry", "sequence": { "sequence": "MALAVASWAPGLWRACNALMAAFFALAAVVQVNDPDAEFWVVVYMIPAVLTLLVGFNPLVTGNFVWKSVSVIHMLFCVLWAGNLAYHFLLHAQQSILNEEEGSLLLSLVTLLARYTALSTRVLWFLEEGLNDLSTVRLAVYQEHFQTRTSKSHWAAVVLPSP", "length": 162, "header": "tr|A0A9J7JVM9-1|A0A9J7JVM9_CRIGR Computationally mapped isoform of Transmembrane protein 220 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tmem220 PE=4 SV=1 CANONICAL=A0A8C2QDE7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDE7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDE7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDE7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770411", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770411", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QDG2-1", "uniprot_ac": "A0A8C2QDG2", "uniprot_id": "A0A8C2QDG2_CRIGR", "mass": { "chemical_mass": 50774.0, "monoisotopic_mass": 50774.0 }, "refseq": { "ac": "XP_027243538", "name": "spermatogenesis-associated protein 48", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243538" }, "gene_names": [ { "name": "Spata48", "type": "recommended", "evidence": [ { "id": "A0A8C2QDG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2" } ] }, { "name": "Spata48", "type": "synonym", "evidence": [ { "id": "XP_027243538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243538" } ] } ], "protein_names": [ { "name": "Spermatogenesis-associated protein 48", "type": "synonym", "evidence": [ { "id": "A0A8C2QDG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2/entry#names_and_taxonomy" } ] }, { "name": "spermatogenesis-associated protein 48", "type": "synonym", "evidence": [ { "id": "XP_027243538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243538" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243538" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDG2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata48", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2", "locus": {} } ], "crossref": [ { "id": "IPR027867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759903", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759903", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NRRWNSR", "url": "https://omabrowser.org/oma/group/NRRWNSR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QDG2", "url": "https://www.orthodb.org/?gene=A0A8C2QDG2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34759", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34759", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34759:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34759:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243538", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QDG2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QDG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNYMDMEVKNKPGKISIPERFIFSGAKAVENPDYPHYCDLLRKMNMPFVKGPEDRHNCSRFEKKCSSAFLKFHPYPPSVLPDYHFHYPYPPPYGPEYALFPLRDDTSLADPCSGFMSAGADADLKPGIGRTIPNLVSYNDVKPQNRVPRPDKGFQTPIKRQTVLLEELQTSRKWNSREVPDISIRAKLGGWTSPHKVIPIPPNDHKRSSLSRILTFDDEATNTDDNEPLVQPGKKYNMKDSFYKSSTQKAYEAVPWDKMLQPKLDPEETTLEKAADNISHCFTLKRYERVPAISQMVGGLWDRFQTRLFSVPAKPISFVSPSSRSKYIPRYTGHVQSTNADDVDNPFGNITSVAEPRHSKLLYTNTSCAANIPGYTGKVHFTATHPTNSNIPSTTPSPDSEMSRFLRQSMEDDRFRHQAPLSRMVTTVRPYNPFNRKEKETIDY", "length": 445, "header": "tr|A0A8C2QDG2-1|A0A8C2QDG2_CRIGR Isoform 1 of Spermatogenesis-associated protein 48 OS=Cricetulus griseus OX=10029 GN=Spata48 PE=4 SV=1 CANONICAL=A0A8C2QDG2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QDG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2/entry", "sequence": { "sequence": "MKNYMDMEVKNKPGKISIPERFIFSGAKAVENPDYPHYCDLLRKMNMPFVKGPEDRHNCSRFEKKCSSAFLKFHPYPPSVLPDYHFHYPYPPPYGPEYALFPLRDDTSLADPCSGFMSAGADADLKPGIGRTIPNLVSYNDVKPQNRVPRPDKGFQTPIKRQTVLLEELQTSRKWNSREVPDISIRAKLGGWTSPHKVIPIPPNDHKRSSLSRILTFDDEATNTDDNEPLVQPGKKYNMKDSFYKSSTQKAYEAVPWDKMLQPKLDPEETTLEKAADNISHCFTLKRYERVPAISQMVGGLWDRFQTRLFSVPAKPISFVSPSSRSKYIPRYTGHVQSTNADDVDNPFGNITSVAEPRHSKLLYTNTSCAANIPGYTGKVHFTATHPTNSNIPSTTPSPDSEMSRFLRQSMEDDRFRHQAPLSRMVTTVRPYNPFNRKEKETIDY", "length": 445, "header": "tr|A0A8C2QDG2-1|A0A8C2QDG2_CRIGR Isoform 1 of Spermatogenesis-associated protein 48 OS=Cricetulus griseus OX=10029 GN=Spata48 PE=4 SV=1 CANONICAL=A0A8C2QDG2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDG2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDG2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759903", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759903", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8RM10-1", "protein_name": "Protein SPMIP7 isoform X1", "gene_name": "spmip7", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKIYSIHFLIVCFYESLMGEKGETYRVRLLKAPCGNSKEVSRWLCRRMNLPCEKGPEGRYDFESMAETDRRAFSKFNPAAKQPAENAALAPLRDGVSLIDHCSGQLSTGAQVHLEVTSRTPFVNRVYPTSDLWVPAGARDRPQTPPTRPSALIYDNSEHKRWNSRMRPEAALKAKLEGWTNAQSIKQPSQDSHEINADPDPSVLFDSKATAAQQYIYTSATQRGYEDVAWDSKLPPRHEPPISSLEKMADPVSQCFVLKRYHSRPELWQAIGSHWSKHQLRGTFNPKKPISFTSSCPKSGHIPLYCGTVGSENMDNVNIPEEDFTPLTVLRSKVPPHTLTSYRTTIPGYTGKARFDRAQTSEASLPSLLCTPQTAGSLPGTWNSSFYGRKAPLSSMITTVPPGNPYLHSKAPVLSMK", "length": 417 }, "evidence": [ { "id": "A0A8C2QDG2", "url": "https://omabrowser.org/oma/group/A0A8C2QDG2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0X5T2-1", "protein_name": "Sperm microtubule inner protein 7", "gene_name": "C7orf72", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTMVSHGAKRRAAMSVEPIHRMHHQQYQNLLKKMCMPFIRGPENRHDFASFEEKDSNSFLKFHPDTPPFGPNYPLFPHRDDVPLVDPCSGFVSVGGDAELQPGVGKVIESLVDYSDVKPHQRVPTAGKGARTAHRRHMILLEETSQDRRWNSRAVPAALIRAKLRGQTTSVKGFRAPLDQHHNFAFCMDPNLKESNDPSASWREEKAKDYFYKSSTQKAYEEVPWDNILPSKIQPPESTVEVMADPVSQCFTKRRYNPEPEISQVIGNLWDRFQRRYFTSSQRPVNFVSRSSRICQIPLYTGCVGAVNFEDIDNPSVDLIIFNHVQTSKPRYTRTAHTPNIPGYTGKVHWLATHPANSNLPSTSPSIISQMHGYIAKYGRSSQYNHQGPFSQMMTPVSPQNPFNKIQKGQSLLPA", "length": 415 }, "evidence": [ { "id": "A0A8C2QDG2", "url": "https://omabrowser.org/oma/group/A0A8C2QDG2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4D263-1", "protein_name": "Protein SPMIP7", "gene_name": "SPMIP7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVEIQDTPGKISISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPYPPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLNPGIGRTIPTLVDFSDVKPQHRVPRPDTGFQTTIKRQKILSEELQQNRRWNSREVPDISIRARLGGWTSPLKVTPLQPHHEGRSLSHIFTFDEEATCTDEGEPLVQTNKKCNAKDSFYKSSTQKAYEDVPWDKMLPPKLVPEETTLEKTADPISQCFTLKRYKGVPAITQMVGELWDRFQTRSFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAKQRYSKPLYTNTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVTTVRPYNPFNKKDKETIDY", "length": 438 }, "evidence": [ { "id": "A0A8C2QDG2", "url": "https://omabrowser.org/oma/group/A0A8C2QDG2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D4A9H9-1", "protein_name": "Sperm microtubule inner protein 7", "gene_name": "Spmip7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRQSMDMEVKHIPGKISIPKRFIFSEGKAIEHPDYPHYHDLLQKMNMPFVKGFEDRHNCGRFEKKFNPTFLKFHPYPPSVLPDYHVHYPYPPPFGKAYPLAPLRDDVPLGDPCSGFMSPGGDADLKPGVGRAIPNLVSFHDVKPQNRVPRPDKGFHTTIKRQTILTEELKQDRRWNSRKVSDIFIRAKLGGWTSPRKVIPVPVHEHEVGTLSRLYTFEEEATSTDDSEPLVQLDKKTNTKDSFYKSSTQKAYENVPWDKILSPKLDPEETTLEKAADHISQCFTLKRYERLPAITQMVGGLWDRFQTRLFSAPVKPINFVSPSTRSKYIPLYTGHVQSTNADDVDNPYGDIKSVASPRHSKLLYTDTSRSANIPGYTGKVHFTATHPTNSNIPPTMPLSDSEMNRLLLQEMRVDRFRHQGPLSQMVTTVKPYNPFNRKEKEALEY", "length": 445 }, "evidence": [ { "id": "A0A8C2QDG2", "url": "https://omabrowser.org/oma/group/A0A8C2QDG2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1SF27-1", "protein_name": "Sperm microtubule inner protein 7", "gene_name": "SPMIP7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDMDSQHTPGKISISEGSFLSRARAVENVDYPHHRDLLRKLNMPFVKGVEDRHDYGRIEKKCNPAFLKFHPYPPSALPDYHLHYPYPPPYGPDYPLFPLRDDVPLGDSCSGFLSPGGDADLKPGVGRAIPSLVDFSDVKPQHQVPRPDTGFQTTLKRKNLLFEELKQDRRWNSRAVPDVSIRARLGGWTSPVKVTPLRTHHEEYSTHHPYTFDEEATSTDDGDTLVQPNKKYSAKDSFYKSSTQKAYEAVPWDKMLPPKVDPEETTVERAADPISQCFTLKRYERLPAITQMVGGLWDRFQTRSFLAPVKPVNFVSPSSRSKYLPLYTGCVQSTNAEDIDNPHGDTASLAGARSSEVLSANTSRSANIPGYTGKVHFTATHPANSNIPSTTPSPDSEVHRVLGKEMAVDVFRHQGPLSQMVTTVKPHNPFEKKEKETVGS", "length": 440 }, "evidence": [ { "id": "A0A8C2QDG2", "url": "https://omabrowser.org/oma/group/A0A8C2QDG2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q5NC83-1", "protein_name": "Protein SPMIP7", "gene_name": "Spmip7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDMEVKTMPGKISIPRRFIFSEGKAIEHPDYPHYSNLLQKMNMPSVKGLEDRHNCVRFEKKCNPTFLKFHPYPPSVLPDYHLHYPYPPPYGRAYPLAPLRDDVPLGDPCSGFMSPGGDANLKPNIGRAIPNLVSFHDVKPQNRVPRPDKGFQTTIKRQTILAEELKQDRRWNSRKVPDISIKAKLGGWTSPMKVVPVPVHEHEVGTLSRIYTFDEEAISTDDSEPLVQLDKKYNIKDSFYKSSTQKAYEDVPWDKMLPPKLDPEETTVEKAADHISQCFSLKRYERLPAITQMVGGLWDRFQTRLFSAPAKPINFVSPSTRSKYIPLYTGHVQSTDADNVDNPYGDIKSVASPRHSKLQYTNSSRSANIPGYTGKVHFTATHPTNSNIPSREPSADSEMNRLLLQEMRVDRFRHQGPMSQMVTTVKPYNPFNKKEKETLEY", "length": 441 }, "evidence": [ { "id": "A0A8C2QDG2", "url": "https://omabrowser.org/oma/group/A0A8C2QDG2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDG2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 278, "end_pos": 280 }, { "start_pos": 350, "end_pos": 352 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QDK5-1", "uniprot_ac": "A0A8C2QDK5", "uniprot_id": "A0A8C2QDK5_CRIGR", "mass": { "chemical_mass": 32068.0, "monoisotopic_mass": 32068.0 }, "refseq": { "ac": "XP_003512948", "name": "protein FAM78A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512948" }, "gene_names": [ { "name": "Fam78a", "type": "recommended", "evidence": [ { "id": "A0A8C2QDK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5" } ] }, { "name": "Fam78a", "type": "synonym", "evidence": [ { "id": "XP_003512948", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512948" } ] } ], "protein_names": [ { "name": "Protein FAM78A", "type": "synonym", "evidence": [ { "id": "A0A8C2QDK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5/entry#names_and_taxonomy" } ] }, { "name": "protein FAM78A", "type": "synonym", "evidence": [ { "id": "XP_003512948", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512948" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 639 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615645.1) and transcript sequence (IACG01049628.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003512948", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512948" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDK5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam78a", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5", "locus": {} } ], "crossref": [ { "id": "100753079", "url": "https://www.ncbi.nlm.nih.gov/gene/100753079", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753079", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753079", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MQLNIEV", "url": "https://omabrowser.org/oma/group/MQLNIEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QDK5", "url": "https://www.orthodb.org/?gene=A0A8C2QDK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31655", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31655", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31655:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31655:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003512948", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512948", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QDK5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QDK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPCYFWDCWPSLEIRAVLCAMGCIQSIGGKARVFREGITVIDVKASIDPIPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWIVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR", "length": 283, "header": "tr|A0A8C2QDK5-1|A0A8C2QDK5_CRIGR Isoform 1 of Protein FAM78A OS=Cricetulus griseus OX=10029 GN=Fam78a PE=4 SV=1 CANONICAL=A0A8C2QDK5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QDK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5/entry", "sequence": { "sequence": "MPCYFWDCWPSLEIRAVLCAMGCIQSIGGKARVFREGITVIDVKASIDPIPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWIVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR", "length": 283, "header": "tr|A0A8C2QDK5-1|A0A8C2QDK5_CRIGR Isoform 1 of Protein FAM78A OS=Cricetulus griseus OX=10029 GN=Fam78a PE=4 SV=1 CANONICAL=A0A8C2QDK5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDK5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDK5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDK5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753079", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753079", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AFB3-1", "protein_name": "Family with sequence similarity 78 member A", "gene_name": "FAM78A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGCIQSISCKSKVFRESISVIEVKASIDPIPTSIDESSSVVLRYRTPHFRASAQVLVPPIPKKETWIVGWIQACSHMEFYNHYGDQGMSSWELPDLLEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKKESKFNISMNDNFYPSVTWAVPVSESNVAKLTSIHRDQSFTTWLVATNTATNEMVTLQTIKWRMRLGIEVNPSRPLGQRAKLQEPSAQEQPQVLSKNEPIPPSALVKPNANDAQVLMWRPKDGPPLVVIPPKHR", "length": 263 }, "evidence": [ { "id": "A0A8C2QDK5", "url": "https://omabrowser.org/oma/group/A0A8C2QDK5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZW92-1", "protein_name": "Family with sequence similarity 78, member A", "gene_name": "Fam78a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPCYFWDCWPSLEIRAVLCAMGCIQSIGGKARVFREGITVIDVKASIDPIPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWIVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR", "length": 283 }, "evidence": [ { "id": "A0A8C2QDK5", "url": "https://omabrowser.org/oma/group/A0A8C2QDK5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "I3LA76-1", "protein_name": "Family with sequence similarity 78 member A", "gene_name": "FAM78A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPSFLWDCWPSLEIRAVLCAMGCIQSIGGKARVFREGITVIDVKASIDPIPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWIVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIVLQTLHWRMQLSIEVNPTRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR", "length": 283 }, "evidence": [ { "id": "A0A8C2QDK5", "url": "https://omabrowser.org/oma/group/A0A8C2QDK5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q5JUQ0-1", "protein_name": "Protein FAM78A", "gene_name": "FAM78A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR", "length": 283 }, "evidence": [ { "id": "A0A8C2QDK5", "url": "https://omabrowser.org/oma/group/A0A8C2QDK5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 197, "end_pos": 199 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EV46-1", "uniprot_ac": "A0A9J7EV46", "uniprot_id": "A0A9J7EV46_CRIGR", "mass": { "chemical_mass": 37621.0, "monoisotopic_mass": 37621.0 }, "refseq": { "ac": "XP_027243820", "name": "activator of 90 kDa heat shock protein ATPase homolog 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243820" }, "gene_names": [ { "name": "Ahsa2p", "type": "recommended", "evidence": [ { "id": "A0A9J7EV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46" } ] }, { "name": "Ahsa2p", "type": "synonym", "evidence": [ { "id": "XP_027243820", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243820" } ] } ], "protein_names": [ { "name": "Activator of 90 kDa heat shock protein ATPase homolog 2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7EV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46/entry#names_and_taxonomy" } ] }, { "name": "activator of 90 kDa heat shock protein ATPase homolog 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027243820", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243820" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243820", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243820" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ahsa2p", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46", "locus": {} } ], "crossref": [ { "id": "A0A9J7EV46", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EV46", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08892", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08892", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756374", "url": "https://www.ncbi.nlm.nih.gov/gene/100756374", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756374", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756374", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EV46", "url": "https://www.orthodb.org/?gene=A0A9J7EV46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EZV2", "url": "https://www.orthodb.org/?gene=A0A9J7EZV2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13009:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13009:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243820", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243820", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QDL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EV46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATVWSKGKLRELLVGIAMENETGRCEISELKQVEGEASCSSRKGKLIFFYEWNIKLAWKGTIKESGAKHKGLIEIPSLSEENEVDDTEVNVSKKKGDGDILKDLMKTTGTAKVREALGEYLKALKTEFTTGMILPTKAIATQELTVERKVTGNPLQVQASPVALGVRIPTVALHLTELFDTTVEQLYSIFTVKDLVQKFSKSPAVLEAEKGGKFQMFDGNITGEYVELLTNRKIIMKWRCRNWPEEHYATVALNFVPAPGQTELQLDCKGVPVCKEENTKFCWQKQHFEEIKGLLQLTTQNA", "length": 333, "header": "tr|A0A9J7EV46-1|A0A9J7EV46_CRIGR Isoform 1 of Activator of 90 kDa heat shock protein ATPase homolog 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ahsa2p PE=3 SV=1 CANONICAL=A0A9J7EV46-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QDL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDL5/entry", "sequence": { "sequence": "MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATVWSKGKLRELLVGIAMENETGRCEISELKQVEGEASCSSRKGKLIFFYEWNIKLAWKGTIKESGAKHKGLIEIPSLSEENEVDDTEVNVSKKKGDGDILKDLMKTTGTAKVREALGEYLKALKTEFTTGMILPTKAIATQELTVERKVTGNPLQASPVALGVRIPTVALHLTELFDTTVEQLYSIFTVKDLVQKFSKSPAVLEAEKGGKFQMFDGNITGEYVELLTNRKIIMKWRCRNWPEEHYATVALNFVPAPGQTELQLDCKGVPVCKEENTKFCWQKQHFEEIKGLLQLTTQNA", "length": 331, "header": "tr|A0A8C2QDL5-1|A0A9J7EV46_CRIGR Computationally mapped isoform of Activator of 90 kDa heat shock protein ATPase homolog 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ahsa2p PE=3 SV=1 CANONICAL=A0A9J7EV46-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EV46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46/entry", "sequence": { "sequence": "MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATVWSKGKLRELLVGIAMENETGRCEISELKQVEGEASCSSRKGKLIFFYEWNIKLAWKGTIKESGAKHKGLIEIPSLSEENEVDDTEVNVSKKKGDGDILKDLMKTTGTAKVREALGEYLKALKTEFTTGMILPTKAIATQELTVERKVTGNPLQVQASPVALGVRIPTVALHLTELFDTTVEQLYSIFTVKDLVQKFSKSPAVLEAEKGGKFQMFDGNITGEYVELLTNRKIIMKWRCRNWPEEHYATVALNFVPAPGQTELQLDCKGVPVCKEENTKFCWQKQHFEEIKGLLQLTTQNA", "length": 333, "header": "tr|A0A9J7EV46-1|A0A9J7EV46_CRIGR Isoform 1 of Activator of 90 kDa heat shock protein ATPase homolog 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ahsa2p PE=3 SV=1 CANONICAL=A0A9J7EV46-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV2/entry", "sequence": { "sequence": "MENETGRCEISELKQVEGEASCSSRKGKLIFFYEWNIKLAWKGTIKESGAKHKGLIEIPSLSEENEVDDTEVNVSKKKGDGDILKDLMKTTGTAKVREALGEYLKALKTEFTTGMILPTKAIATQELTVERKVTGNPLQVQASPVALGVRIPTVALHLTELFDTTVEQLYSIFTVKDLVQKFSKSPAVLEAEKGGKFQMFDGNITGEYVELLTNRKIIMKWRCRNWPEEHYATVALNFVPAPGQTELQLDCKGVPVCKEENTKFCWQKQHFEEIKGLLQLTTQNA", "length": 285, "header": "tr|A0A9J7EZV2-1|A0A9J7EZV2_CRIGR Computationally mapped isoform of Activator of 90 kDa heat shock protein ATPase homolog 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ahsa2p PE=3 SV=1 CANONICAL=A0A9J7EV46-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDL5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDL5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756374", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756374", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46" } ], "pmid": "" }, { "name": "ATPase activator activity", "id": "GO:0001671", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001671", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": 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{ "start_pos": 121, "end_pos": 123 }, { "start_pos": 251, "end_pos": 253 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QDP8-1", "uniprot_ac": "A0A8C2QDP8", "uniprot_id": "A0A8C2QDP8_CRIGR", "mass": { "chemical_mass": 24575.0, "monoisotopic_mass": 24575.0 }, "refseq": { "ac": "XP_003495445", "name": "single-pass membrane and coiled-coil domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495445" }, "gene_names": [ { "name": "Smco1", "type": "recommended", "evidence": [ { "id": "A0A8C2QDP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8" } ] }, { "name": "Smco1", "type": "synonym", "evidence": [ { "id": "XP_003495445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495445" } ] } ], "protein_names": [ { "name": "Single-pass membrane and coiled-coil domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "A0A8C2QDP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8/entry#names_and_taxonomy" } ] }, { "name": "single-pass membrane and coiled-coil domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_003495445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495445" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613591.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495445", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495445" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDP8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smco1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8", "locus": {} } ], "crossref": [ { "id": "100752866", "url": "https://www.ncbi.nlm.nih.gov/gene/100752866", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752866", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752866", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FMITNMV", "url": "https://omabrowser.org/oma/group/FMITNMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QDP8", "url": "https://www.orthodb.org/?gene=A0A8C2QDP8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35979", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35979", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35979:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35979:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15080", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15080", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495445", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495445", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QDP8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QDP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNHETTTLVSLKEAMTRVDNKLQALEIQFKELDVTKDNLIQQFEQHSKTLASQAAQDEIWTAVLTLGFTSMELNILYSYVIEVLICLHTRVLQKLPDLVRSLPTLASVFRRKVKNKHVRIVWESVMEEYGLQERDVTALCTFFIAHGNKAEHYAANIRQTYIKDVTFMITNMVKNQALQDALLRAVQVIEKGKAVRTPENQRASLKELMPSTKD", "length": 214, "header": "tr|A0A8C2QDP8-1|A0A8C2QDP8_CRIGR Isoform 1 of Single-pass membrane and coiled-coil domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Smco1 PE=4 SV=1 CANONICAL=A0A8C2QDP8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QDP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8/entry", "sequence": { "sequence": "MNHETTTLVSLKEAMTRVDNKLQALEIQFKELDVTKDNLIQQFEQHSKTLASQAAQDEIWTAVLTLGFTSMELNILYSYVIEVLICLHTRVLQKLPDLVRSLPTLASVFRRKVKNKHVRIVWESVMEEYGLQERDVTALCTFFIAHGNKAEHYAANIRQTYIKDVTFMITNMVKNQALQDALLRAVQVIEKGKAVRTPENQRASLKELMPSTKD", "length": 214, "header": "tr|A0A8C2QDP8-1|A0A8C2QDP8_CRIGR Isoform 1 of Single-pass membrane and coiled-coil domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Smco1 PE=4 SV=1 CANONICAL=A0A8C2QDP8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDP8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDP8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDP8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752866", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752866", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BI98-1", "protein_name": "Single-pass membrane protein with coiled-coil domains 1", "gene_name": "SMCO1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNRETTTLISLKETMTRVDHKLQALEAQFKELDFTKDNLAQKFEHHSKTLANQVAQDELWTAVLSLKFTPMELNILYSYVIEVLICLHTRVLEELPDLVRGLPTLTSILRRKVKNKRIRVVWESVLAECGLQEGDITALCTFFVAHGNKAEHYIAKVRQMYIRDVNFLITNMVKNQALQDGLLKAVQVIEKGKAVRAPEEQKSSLKELMPTVKS", "length": 214 }, "evidence": [ { "id": "A0A8C2QDP8", "url": "https://omabrowser.org/oma/group/A0A8C2QDP8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0AAA9TQR9-1", "protein_name": "Single-pass membrane protein with coiled-coil domains 1", "gene_name": "SMCO1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNNETTTLISLKEAMKRVDHKLQALEAHFKELDFIKDNLTQKFEDHSKTLANQGAQDELWKAVLSLKFTSMELNILYSYVIEVLVHLHTCVLEKLPDLVRSLPTLASILRRKVKNKRIRVVWESVLEEHGLQEGDITALCIFFVAHGNKAEHYIAKVRQMYIRDINFMISNMVKNQALQDGLLKAVQVIEKGKAEMAPQEKKSPLKELIPSVKS", "length": 214 }, "evidence": [ { "id": "A0A8C2QDP8", "url": "https://omabrowser.org/oma/group/A0A8C2QDP8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LVE5-1", "protein_name": "Single-pass membrane protein with coiled-coil domains 1", "gene_name": "Smco1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNHETTTLISLKEAMKRVDNKLQALDTQFKELDTIKDNLTLRFEHHSKTLASQAAQDEIWTAALALGFTSMELNILYSYVIEVLICLHTRMLQKLPDLVRSLPTLASVLRRKTKNKHIRTVWESILEEYGLRERDVTALCTFFVVHGNKGEHYTANVRRMHIKDVSFMITNMVTNQALQEGLLRAVQIIEKGKAARTPETSRAPLKELMPPVKG", "length": 214 }, "evidence": [ { "id": "A0A8C2QDP8", "url": "https://omabrowser.org/oma/group/A0A8C2QDP8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q147U7-1", "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 1", "gene_name": "SMCO1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNNETTTLISLKEAMKRVDHKLQALETQFKELDFTKDNLMQKFEHHSKALASQAAQDEMWTAVRALQLTSMELNILYSYVIEVLICLHTRVLEKLPDLVRGLPTLASVLRRKVKNKRVRVVWESILEECGLQEGDITALCTFFIARGNKAEHYTAKVRQMYIRDVTFLITNMVKNQALQDSLLRAVQVIEKGKAVRTPEKQKSSLEELIPSVKN", "length": 214 }, "evidence": [ { "id": "A0A8C2QDP8", "url": "https://omabrowser.org/oma/group/A0A8C2QDP8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CEZ1-1", "protein_name": "Single-pass membrane and coiled-coil domain-containing protein 1", "gene_name": "Smco1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHETTTLISLKEAMKRVDNKLRALDTQFKELDVTKDNLTLRFEHHSKTLASQAAQDEIWTAALALGFTSMELNIVYSYVIEVLICLHTRMLQKLPDLVRSLPTLASVLRRKAKNKHVRLVWESVLQEYGLQERDVSALCTFFIVHGNKGEHYAANVRRMYIKDVSFMITNMVKNQALQDGLLRAVQIIEKGKQAQDPENSRAPLKELMPPVKD", "length": 214 }, "evidence": [ { "id": "A0A8C2QDP8", "url": "https://omabrowser.org/oma/group/A0A8C2QDP8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QDS4-1", "uniprot_ac": "A0A8C2QDS4", "uniprot_id": "A0A8C2QDS4_CRIGR", "mass": { "chemical_mass": 38014.0, "monoisotopic_mass": 38014.0 }, "refseq": { "ac": "XP_007644920", "name": "snRNA-activating protein complex subunit 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644920" }, "gene_names": [ { "name": "Snapc2", "type": "recommended", "evidence": [ { "id": "A0A8C2QDS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4" } ] }, { "name": "Snapc2", "type": "synonym", "evidence": [ { "id": "XP_007644920", "database": "RefSeq", "url": 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assembly gap :: added 194 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614218.1) and transcript sequence (JI863435.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007644920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644920" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Snapc2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4", "locus": {} } ], "crossref": [ { "id": "100759063", "url": "https://www.ncbi.nlm.nih.gov/gene/100759063", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021281", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021281", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759063", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759063", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QDS4", "url": "https://www.orthodb.org/?gene=A0A8C2QDS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15132", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15132", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15132:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15132:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11035", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11035", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007644920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644920", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QDS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QDS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPPQRSRKVPARYVGEATGPTAWSPREMRHLLRLLQARRGQPEPDAAELAKELRGRSEAEICRFIQQLKGRVVREAIRKVHPGGTEGLRRQEAKLPAPIEVWMDLAEKLTGPLEGPLTAAFSQVLTIAAAEPISLLHSKPGKPTKACGKPLLFLSTQGGQRDPGLEAGPALTTADSTPKASVPVPKPSDPNPVTLGLASEVTVSDTPTKSLAGPSTEKDLAVDFEKIYKYLSFSSRNGHGPELSAAESAVVLDLLMSLPEELSHLPCTALVEHMTKTYAQLMAPQTSLPAGKSPRPGSEDRGTGSKGPEEPDQTSPQASESTEQMPAWQTVGICPLNPFLVPLELLGQVPTPAR", "length": 355, "header": "tr|A0A8C2QDS4-1|A0A8C2QDS4_CRIGR Isoform 1 of snRNA-activating protein complex subunit 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Snapc2 PE=4 SV=1 CANONICAL=A0A8C2QDS4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QDS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4/entry", "sequence": { "sequence": "MKPPQRSRKVPARYVGEATGPTAWSPREMRHLLRLLQARRGQPEPDAAELAKELRGRSEAEICRFIQQLKGRVVREAIRKVHPGGTEGLRRQEAKLPAPIEVWMDLAEKLTGPLEGPLTAAFSQVLTIAAAEPISLLHSKPGKPTKACGKPLLFLSTQGGQRDPGLEAGPALTTADSTPKASVPVPKPSDPNPVTLGLASEVTVSDTPTKSLAGPSTEKDLAVDFEKIYKYLSFSSRNGHGPELSAAESAVVLDLLMSLPEELSHLPCTALVEHMTKTYAQLMAPQTSLPAGKSPRPGSEDRGTGSKGPEEPDQTSPQASESTEQMPAWQTVGICPLNPFLVPLELLGQVPTPAR", "length": 355, "header": "tr|A0A8C2QDS4-1|A0A8C2QDS4_CRIGR Isoform 1 of snRNA-activating protein complex subunit 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Snapc2 PE=4 SV=1 CANONICAL=A0A8C2QDS4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 22, "start_aa": "Thr", "end_pos": 22, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr22", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 352, "start_aa": "Thr", "end_pos": 352, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr352", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759063", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759063", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "snRNA transcription", "id": "GO:0009301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009301", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA polymerase II general transcription initiation factor activity", "id": "GO:0016251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016251", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QDS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 22, 352 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, 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"gene_names": [ { "name": "LOC100761009", "type": "recommended", "evidence": [ { "id": "A0A8C2QDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDV7" } ] }, { "name": "LOC100761009", "type": "synonym", "evidence": [ { "id": "XP_027274858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274858" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 121 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QDV7/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 121 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027274858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274858" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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"Testis-expressed protein 47", "type": "synonym", "evidence": [ { "id": "A0A8C2QE39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39/entry#names_and_taxonomy" } ] }, { "name": "testis-expressed protein 47", "type": "synonym", "evidence": [ { "id": "XP_003502770", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502770" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613910.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502770", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502770" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE39", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tex47", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39", "locus": {} } ], "crossref": [ { "id": "100766109", "url": "https://www.ncbi.nlm.nih.gov/gene/100766109", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR055308", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055308", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766109", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766109", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLFMQWY", "url": "https://omabrowser.org/oma/group/RLFMQWY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QE39", "url": "https://www.orthodb.org/?gene=A0A8C2QE39", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34035", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34035", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34035:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34035:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502770", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502770", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QE39", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QE39-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFMVHTRKGSKKHYHVDPLLMPKVPRINYMHLQEEKHRLQLKKFLLHRMFLVGHIQENVEKKEISEYYEQLFQSILKHHLGEAVTGILLIYSSTFLHIMETSNGTFFRILLDYVAHEKEENEFMIYNMKIIVASHNIPTRLFMQWHISVIKVPVLYLEDVTQSQSLAEVTTDFLTMTHKLSLHLFKTIKVGMKGPGDNLHQIAPDLLLPEQTIQYLCKADEFLDPVTFLSMYNKPIHVTLDSEIVWPAPSRF", "length": 253, "header": "tr|A0A8C2QE39-1|A0A8C2QE39_CRIGR Isoform 1 of Testis-expressed protein 47 OS=Cricetulus griseus OX=10029 GN=Tex47 PE=4 SV=1 CANONICAL=A0A8C2QE39-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QE39-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39/entry", "sequence": { "sequence": "MSFMVHTRKGSKKHYHVDPLLMPKVPRINYMHLQEEKHRLQLKKFLLHRMFLVGHIQENVEKKEISEYYEQLFQSILKHHLGEAVTGILLIYSSTFLHIMETSNGTFFRILLDYVAHEKEENEFMIYNMKIIVASHNIPTRLFMQWHISVIKVPVLYLEDVTQSQSLAEVTTDFLTMTHKLSLHLFKTIKVGMKGPGDNLHQIAPDLLLPEQTIQYLCKADEFLDPVTFLSMYNKPIHVTLDSEIVWPAPSRF", "length": 253, "header": "tr|A0A8C2QE39-1|A0A8C2QE39_CRIGR Isoform 1 of Testis-expressed protein 47 OS=Cricetulus griseus OX=10029 GN=Tex47 PE=4 SV=1 CANONICAL=A0A8C2QE39-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE39", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE39", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE39" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766109", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766109", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1UF97-1", "protein_name": "Testis expressed 47", "gene_name": "TEX47", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSISAHTRKTNKKNSPLESILMPQVPRSNYLHLQEEKQRLQLKKFLLHRIFLVAKITANMEKKDIAEYYEQVFQSILKRHLGEAVTGLLLIYPTSILHILESSNDTLYQILSDYLNHEKDEVEFFIQGMKIIVTSHNIPTRLFMQWYISVIKAPVMYLDDVTQSQSLQEVITEFLIQTHKLALHIFKTVKVGTKGPGDNLHQIAPDLLLPEQIIKYLCNSEEFMDPETFINLYNKPIHVTLDSEVVWPAPSRF", "length": 253 }, "evidence": [ { "id": "A0A8C2QE39", "url": "https://omabrowser.org/oma/group/A0A8C2QE39/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0JPP5-1", "protein_name": "Testis-expressed protein 47", "gene_name": "Tex47", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFIVHNRRSSKKQFQVDPLLMPKVPRINYLHIQEEKHRLQLKKFLLHRLFLVGYIQANTEKKEISEYYEQLFQSILKHHLGEVVTGLFLIYPSSFLHILESSNGTLFRILLDYVAHEKSEREFMIQNMKIIVASHNIPTRLFMQWHISIIKVPVLYLDDDTQSQSVEEVTTDFLTLTHKLALHLYKTVKLGGKGPGDNLHQLAPELILPEKTIKYLCKATEFMDPASFLSMYNRPIHITMDSDIVWPAPSRF", "length": 253 }, "evidence": [ { "id": "A0A8C2QE39", "url": "https://omabrowser.org/oma/group/A0A8C2QE39/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MDK7-1", "protein_name": "Testis expressed 47", "gene_name": "TEX47", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFGTHPRKTNKKNLPLESLMPQVPRSNYLQFQEEKQRLQLKKFLLHRMFLVARITANIEKKDIADYYEQLFQSILKRHLGEAVTGLLLIYPTSILHILESSSGTFYQILLDYLSHKKDEMEFFIQGMKIIVMSHNIPTRLFMQWHVSVIKAPVMYLDDVTQTQSLQEVMMEFLIQTHKLALHLFKTVKVSPKGPGDSLHQAAPELLLPEQIIKYLCNSAELMDPEGFINMYNKPIHVTLDSEVVWPAPSRF", "length": 252 }, "evidence": [ { "id": "A0A8C2QE39", "url": "https://omabrowser.org/oma/group/A0A8C2QE39/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8TBZ9-1", "protein_name": "Testis-expressed protein 47", "gene_name": "TEX47", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFSVHNQKGSKRPLPLEPLLFLQVPRSNYLHFQEEKQRLHLKKFLLDRMFLVAKIQANVERKDVADYYEQMFQSVLKHHLGEAVTGLLLIYPTSILHILESSSDTLYKVLLDYIGHVKDETVFFIQQMKIIVISHNIPMRLFMQWHVSVIKVPVMYLDDVTQSQSLKEVITDFLTQTHKLSLYLCQTMKVGTKGPGDNLHQVAPDLLLPEQIIKYLCKSEEFMDPATFINMYNRPIHITLDSEVVWPAPSRF", "length": 253 }, "evidence": [ { "id": "A0A8C2QE39", "url": "https://omabrowser.org/oma/group/A0A8C2QE39/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D5W8-1", "protein_name": "Testis-expressed protein 47", "gene_name": "Tex47", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFMVHNRKGSKKQFQVDPLLLPKVPRTNYLHLQEEKHRLQLKKFLLHRMFLVGYIQGNTEKKDISEYYEQLFQSILKHHLGESVTGLMLIYPSTFLHILESSNGTLFRILLDYVAHEKSETEFMLQNMKIVVASHNIPTRLFMQWHISAIKVPVLYLDDESQSPSIEEVTTEFLTMTHKLALQLYKTVKLGAKGPGDNLHQLAPELILPEQIIKYLCKAEEFMDPASFLSMYNRPIHVTLDSDIVWPAPSRF", "length": 253 }, "evidence": [ { "id": "A0A8C2QE39", "url": "https://omabrowser.org/oma/group/A0A8C2QE39/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614012.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503957", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503957" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tex37", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88", "locus": {} } ], "crossref": [ { "id": "100768528", "url": "https://www.ncbi.nlm.nih.gov/gene/100768528", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768528", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768528", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SYMVDYK", "url": "https://omabrowser.org/oma/group/SYMVDYK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QE88", "url": "https://www.orthodb.org/?gene=A0A8C2QE88", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36882", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36882", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36882:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36882:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15217", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15217", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503957", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503957", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QE88-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARVVNPKKNYVDLDIYQSSYMVDYKPFGKQKYSRVTTEEQAKLDTQLRNKEFYRPMPSPNPRLEDGYPAFKRPYMTAKDLGLPGFFPPQEPETPEKEECRFTNTCYYAYPASLAMYLAQYEPFWLHQRKDFPCLFEPEKQPAPELGKGYLLLPGCPCFQHHSVKVPILNRWGPLLPFYQ", "length": 180, "header": "tr|A0A8C2QE88-1|A0A8C2QE88_CRIGR Isoform 1 of Testis-expressed sequence 37 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tex37 PE=4 SV=1 CANONICAL=A0A8C2QE88-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QE88-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88/entry", "sequence": { "sequence": "MARVVNPKKNYVDLDIYQSSYMVDYKPFGKQKYSRVTTEEQAKLDTQLRNKEFYRPMPSPNPRLEDGYPAFKRPYMTAKDLGLPGFFPPQEPETPEKEECRFTNTCYYAYPASLAMYLAQYEPFWLHQRKDFPCLFEPEKQPAPELGKGYLLLPGCPCFQHHSVKVPILNRWGPLLPFYQ", "length": 180, "header": "tr|A0A8C2QE88-1|A0A8C2QE88_CRIGR Isoform 1 of Testis-expressed sequence 37 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tex37 PE=4 SV=1 CANONICAL=A0A8C2QE88-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768528", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768528", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1VZ26-1", "protein_name": "Sperm microtubule inner protein 9", "gene_name": "SPMIP9", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGVVYPRQAPVDLDTYQSSYMVDYKPYGKHKYVRVAPEEQAKLDTQLRNKEFYRPVPIANPRLEDGYAAFRRRHMTARDLGLPGFFPPQSHVTTVEDEGRFLSVCPTLYPVSHDLYLAHGDPNRIRQSADFPCLLEPERQPAVEVGTGYFLLPGCACPYRCTVKVPILNRWGPLMPFYQ", "length": 180 }, "evidence": [ { "id": "A0A8C2QE88", "url": "https://omabrowser.org/oma/group/A0A8C2QE88/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A5PJD8-1", "protein_name": "Protein SPMIP9", "gene_name": "SPMIP9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGVVFPGQAPVDLDIYQSSYMIDYKPYGKHKYARVTSEVQAKLDTQLRDKEFYRPTPSPNPKLEDGYPAFKRPHMTAKDLGQPGFFPPQGRVGPVEDEWRFTSTCPSVYPASHALYLAHGDPNRIQQSADFPCLLEPEHQPAPDVGKGYFLLPGCACTYHCTVKVPILNRWGPLMPFYQ", "length": 180 }, "evidence": [ { "id": "A0A8C2QE88", "url": "https://omabrowser.org/oma/group/A0A8C2QE88/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZLQ5-1", "protein_name": "Sperm microtubule inner protein 9", "gene_name": "Spmip9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHVVKPQKYQVDLDMYQSSYMIDFKPFGKHKYSRVTPQEAKLDAQLQSKEFYRPKPSPNPKLEDGYPAFKRVHMTALDLGVPGFFPPRDSTAKKDDGRFTTTCHYAYPASLALYLSQYDPYWLHQRADFPCLMEPERQPAPEVGKGYLLLPGCPCDHHQKVKVPILNRWGPLMPFYQ", "length": 178 }, "evidence": [ { "id": "A0A8C2QE88", "url": "https://omabrowser.org/oma/group/A0A8C2QE88/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96LM6-1", "protein_name": "Protein SPMIP9", "gene_name": "SPMIP9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGVKYPGQDPVDLDIYQSSHMVDYQPYRKHKYSRVTPQEQAKLDAQLRDKEFYRPIPNPNPKLTDGYPAFKRPHMTAKDLGLPGFFPSQEHEATREDERKFTSTCHFTYPASHDLHLAQGDPNQVLQSADFPCLVDPKHQPAAEMAKGYLLLPGCPCLHCHIVKVPILNRWGPLMPFYQ", "length": 180 }, "evidence": [ { "id": "A0A8C2QE88", "url": "https://omabrowser.org/oma/group/A0A8C2QE88/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAG4-1", "protein_name": "Protein SPMIP9", "gene_name": "Spmip9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARVVRPQKNHVDLDIYQSSYMVDYKPFGKYKYSRVTPQEQAKLDAQLQSKEFYQPKPNPNPKLEEGYPAFRRPYMTALDLGVPGFFPPQERVTTRKDDGRFTTTCHYAYPASLALYLAQQDPYWLHQRADFPCLMEPERQPAPEVGKGYLLLPGCLCDHHQRVKVPILNRWGPLMPFYQ", "length": 180 }, "evidence": [ { "id": "A0A8C2QE88", "url": "https://omabrowser.org/oma/group/A0A8C2QE88/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88" } ], "pmid": "" }, { "name": "axonemal A tubule inner sheath", "id": "GO:0160111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160111", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE88", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE88" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QEL8-1", "uniprot_ac": "A0A8C2QEL8", "uniprot_id": "A0A8C2QEL8_CRIGR", "mass": { "chemical_mass": 34674.0, "monoisotopic_mass": 34674.0 }, "refseq": { "ac": "XP_027262604", "name": "olfactory receptor 5B3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262604" }, "gene_names": [ { "name": "LOC100775012", "type": "recommended", "evidence": [ { "id": "A0A8C2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8" } ] }, { "name": "LOC100775012", "type": "synonym", "evidence": [ { "id": "XP_027262604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262604" } ] } ], "protein_names": [ { "name": "Olfactory receptor 5B3", "type": "synonym", "evidence": [ { "id": "A0A8C2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 5B3", "type": "synonym", "evidence": [ { "id": "XP_027262604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262604" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262604", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262604" } ] }, { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100775012", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8", "locus": {} } ], "crossref": [ { "id": "cd15407", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15407", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100775012", "url": "https://www.ncbi.nlm.nih.gov/gene/100775012", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100775012", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775012", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QEL8", "url": "https://www.orthodb.org/?gene=A0A8C2QEL8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262604", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262604", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QEL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNRTETTEFILLGLTSAPELKIPLFIIISLIYFINVVGNLGMIVLILWDSRLHTPMYCFLANLSLVDIFYSSAVAPTVLAGLLVGNKVVSYNACVAQMFLFAAFVTTEDFLLAAMAFDRYAAVCKPLHYTTIMTPTMCICLTMACYFGGFLNSSIHTGDTFRLSFCGSNVVHHFFCDVPAVMVLSCSDRHVSEMVLVYGASFVICSALLLILISYTFIFITIFKMRSSAGYQKAMSTCVSHFTAVSIFYGTLIFMYLQPSSSHSMDTDKTVSVFYTMVIPMLNPVVYSLRNKEVKSAFKKVVEKSKYSLGF", "length": 312, "header": "tr|A0A8C2QEL8-1|A0A8C2QEL8_CRIGR Isoform 1 of Olfactory receptor 5B3 OS=Cricetulus griseus OX=10029 GN=LOC100775012 PE=3 SV=1 CANONICAL=A0A8C2QEL8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QEL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QEL8/entry", "sequence": { "sequence": "MGNRTETTEFILLGLTSAPELKIPLFIIISLIYFINVVGNLGMIVLILWDSRLHTPMYCFLANLSLVDIFYSSAVAPTVLAGLLVGNKVVSYNACVAQMFLFAAFVTTEDFLLAAMAFDRYAAVCKPLHYTTIMTPTMCICLTMACYFGGFLNSSIHTGDTFRLSFCGSNVVHHFFCDVPAVMVLSCSDRHVSEMVLVYGASFVICSALLLILISYTFIFITIFKMRSSAGYQKAMSTCVSHFTAVSIFYGTLIFMYLQPSSSHSMDTDKTVSVFYTMVIPMLNPVVYSLRNKEVKSAFKKVVEKSKYSLGF", "length": 312, "header": "tr|A0A8C2QEL8-1|A0A8C2QEL8_CRIGR Isoform 1 of Olfactory receptor 5B3 OS=Cricetulus griseus OX=10029 GN=LOC100775012 PE=3 SV=1 CANONICAL=A0A8C2QEL8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MLLPLACLHGRVAQCLTSLLVLAEPLPRPRRGAKARGAVSISVEAAPAGAKMAAELYPPAGASAPTATDIANSNAAGAAVGRKVGLCCPPRLAPAPLPPLPAPPAPDNNNPESPNWQSFHPTLRERNALMFNNELMADVHFIVGVLGAARRVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLVLLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPELTQRCWEVIDAQAEMALRSEGFCEIDRQTLEIIVTREALNTKEAVVFEAVLNWAEAECKRQGLPITPHNKRHVLGRALYLVRIPTMSLEEFANGPAQSDILTLEETHSIFLWYTAANKPLLDFPLTKRKGLAPQRCHRFQSSAYRSNQWRYRGRCDSIQFAVDRRVFIAGLGLYGSSSGKAEYSVKIELKRLGMVLAQNLTKFVSDGSSSTFPVWFEHPVQVEQDTFYTASAVLDGSELSYFGQEGMTEVQCGKVAFQFQCSSDSTNGTGVQGGQIPELIFYA", "length": 539, "header": "tr|A0A8C2QF76-1|A0A8C2QF76_CRIGR Isoform 1 of BTB/POZ domain-containing protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Btbd6 PE=4 SV=1 CANONICAL=A0A8C2QF76-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QF76-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF76/entry", "sequence": { "sequence": "MLLPLACLHGRVAQCLTSLLVLAEPLPRPRRGAKARGAVSISVEAAPAGAKMAAELYPPAGASAPTATDIANSNAAGAAVGRKVGLCCPPRLAPAPLPPLPAPPAPDNNNPESPNWQSFHPTLRERNALMFNNELMADVHFIVGVLGAARRVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLVLLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPELTQRCWEVIDAQAEMALRSEGFCEIDRQTLEIIVTREALNTKEAVVFEAVLNWAEAECKRQGLPITPHNKRHVLGRALYLVRIPTMSLEEFANGPAQSDILTLEETHSIFLWYTAANKPLLDFPLTKRKGLAPQRCHRFQSSAYRSNQWRYRGRCDSIQFAVDRRVFIAGLGLYGSSSGKAEYSVKIELKRLGMVLAQNLTKFVSDGSSSTFPVWFEHPVQVEQDTFYTASAVLDGSELSYFGQEGMTEVQCGKVAFQFQCSSDSTNGTGVQGGQIPELIFYA", "length": 539, "header": "tr|A0A8C2QF76-1|A0A8C2QF76_CRIGR Isoform 1 of BTB/POZ domain-containing protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Btbd6 PE=4 SV=1 CANONICAL=A0A8C2QF76-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "id": "A0A8C2QF76", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 523, "end_pos": 525, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QF76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF76" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 137, "end_pos": 207, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614098.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504923" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QF93", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF93" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lnp1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF93", "locus": {} } ], "crossref": [ { "id": "100757035", "url": "https://www.ncbi.nlm.nih.gov/gene/100757035", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757035", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757035", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EDQDVKC", "url": "https://omabrowser.org/oma/group/EDQDVKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QF93", "url": "https://www.orthodb.org/?gene=A0A8C2QF93", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35667", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35667", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35667:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35667:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15419", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15419", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504923", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QF93", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QF93-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHRDDDDDDDDVSFAKWMSSFWGHSWRDKDERGLRDHHRPHEASYRKASLPCPFPALPGISSPDCHPRRHSHEDQGSRSHLPMRYHRKCSVDGSFKEPLGSQRGAHPQMQEFSESFEQHPCSPSSGPKGRKERDERHCPGTEMRSHKKLEDRRNSTKDAHGDAPMARLTEKGPE", "length": 175, "header": "tr|A0A8C2QF93-1|A0A8C2QF93_CRIGR Isoform 1 of Leukemia NUP98 fusion partner 1 OS=Cricetulus griseus OX=10029 GN=Lnp1 PE=4 SV=1 CANONICAL=A0A8C2QF93-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QF93-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF93/entry", "sequence": { "sequence": "MEHRDDDDDDDDVSFAKWMSSFWGHSWRDKDERGLRDHHRPHEASYRKASLPCPFPALPGISSPDCHPRRHSHEDQGSRSHLPMRYHRKCSVDGSFKEPLGSQRGAHPQMQEFSESFEQHPCSPSSGPKGRKERDERHCPGTEMRSHKKLEDRRNSTKDAHGDAPMARLTEKGPE", "length": 175, "header": "tr|A0A8C2QF93-1|A0A8C2QF93_CRIGR Isoform 1 of Leukemia NUP98 fusion partner 1 OS=Cricetulus griseus OX=10029 GN=Lnp1 PE=4 SV=1 CANONICAL=A0A8C2QF93-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QF93", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF93" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://omabrowser.org/oma/group/A0A8C2QF93/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A1B0GSK3-1", "protein_name": "Leukemia NUP98 fusion partner 1", "gene_name": "Lnp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEHRDDDDDNDDVSFAKWMSSFWGHSWRDKDERGLRDHQQLQEASYRKASLPCPFPAFPSITSSDCHPRRHSHEDQGSRSHLPTRHHRKCSVDGSLREPTESQRRAHSKMQEFSESFERHLCLQTKPSHSVGPKGKKERDERHCLETTMRSYKRVEDRRSSVKDGDGPMDPLIERGPE", "length": 178 }, "evidence": [ { "id": "A0A8C2QF93", "url": "https://omabrowser.org/oma/group/A0A8C2QF93/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8V0XSV4-1", "protein_name": "Leukemia NUP98 fusion partner 1", "gene_name": "LNP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEYEEDDDISFARWMSSFWGHSLIDENEKEGRGHKKRQTRSLSERRASLPARLSSLHTTRLHASAKGSSSGHLKGSKEFQEDQDVKYRHHKKASRTPSADSSGPETRSNSMQEFAESFEKQLHFKSKRSVSLQPEGMKERRERLHLRKNRSHKRMGEKSEPGGAQKDERSEAIPAKHNEQFPSQASTEKGY", "length": 191 }, "evidence": [ { "id": "A0A8C2QF93", "url": "https://omabrowser.org/oma/group/A0A8C2QF93/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9RWC3-1", "protein_name": "Leukemia NUP98 fusion partner 1", "gene_name": "LNP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSGCYEVLEGQALDILKRLYMEHKDDDDDDDVSFAKWMSSFWGHSWIEEDERGLRDRRGSQDASYRKSSLPCPFPVLPRMMSSASHPRRYSYEDQGFRCHTQVRDHRKCSGDGSFKEPLESKGRSHSKIQSFSDSFEQQLCFRTKRSVSLGPESRKERNERERRFLEVRSCKKVEEKRSSRKEEHGEAYLPTLSEKALK", "length": 200 }, "evidence": [ { "id": "A0A8C2QF93", "url": "https://omabrowser.org/oma/group/A0A8C2QF93/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A1A4G5-1", "protein_name": "Leukemia NUP98 fusion partner 1", "gene_name": "LNP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEHKDDDDDDVSFAKWMSSFWGHSWREEDQRGLRERHRLQATSHRKTSLPCPLPVLPRIPSSDCHPRRHSHEDQEFRCRSHVRDYRKYSEDGSFKEPLESKGRSHSKIEKFSESFERQLCFRTKRSASLGPESRKERNERECLRMEIKSRKKVEEERSSRKEEHGEAHMAPLFEKGPE", "length": 178 }, "evidence": [ { "id": "A0A8C2QF93", "url": "https://omabrowser.org/oma/group/A0A8C2QF93/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QFB0-1", "uniprot_ac": "A0A8C2QFB0", "uniprot_id": "A0A8C2QFB0_CRIGR", "mass": { "chemical_mass": 37737.0, "monoisotopic_mass": 37737.0 }, "refseq": { "ac": "XP_003500962", "name": "quinone oxidoreductase-like protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500962" }, "gene_names": [ { "name": "LOC100752419", "type": "recommended", "evidence": [ { "id": "A0A8C2QFB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFB0" } ] }, { "name": "LOC100752419", "type": "synonym", "evidence": [ { "id": "XP_003500962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500962" } ] } ], "protein_names": [ { "name": "Quinone oxidoreductase-like protein 2", "type": "synonym", "evidence": [ { "id": "A0A8C2QFB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFB0/entry#names_and_taxonomy" } ] }, { "name": "quinone oxidoreductase-like protein 2", "type": "synonym", "evidence": [ { "id": "XP_003500962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500962" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613821.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500962" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFB0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFB0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752419", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFB0", "locus": {} } ], "crossref": [ { "id": "cd08241", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08241", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752419", "url": "https://www.ncbi.nlm.nih.gov/gene/100752419", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752419", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752419", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CDIRGVF", "url": "https://omabrowser.org/oma/group/CDIRGVF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QFB0", "url": "https://www.orthodb.org/?gene=A0A8C2QFB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43677:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43677:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500962", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFB0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARLCARHLPLAWLCRRAAQSQGRHYRAALCAELKHPLIIEEMASSPLGPHEVRVDVHFCGVNFADILVCNGQYQEKPPLPFIPGMEFSGAVLETGTDVNNVKKGDRVIGVTSNLNAMAEECITDQKTLWRIPENVSLQDAAVLPVSYGTAILAVEHRARTQPGETVLVTAAAGATGLAVIDVATNVLRAKVIAAAGSDEKCKLAMQRGAQSSVNYSQGSLKDAVKKLVGSGGVNVAIDMVGGDVFLESVRSLAWEGRIVVLGFAGGNIASLPSNLLLLKNISAMGLYWGRYQHQDFALFSKSLSSALRYCQQGLIRPHIGAVFKLEKINDAFLHVIQRKSTGKVLLSLK", "length": 351, "header": "tr|A0A8C2QFB0-1|A0A8C2QFB0_CRIGR Isoform 1 of Quinone oxidoreductase-like protein 2 OS=Cricetulus griseus OX=10029 GN=LOC100752419 PE=3 SV=1 CANONICAL=A0A8C2QFB0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFB0/entry", "sequence": { "sequence": "MAARLCARHLPLAWLCRRAAQSQGRHYRAALCAELKHPLIIEEMASSPLGPHEVRVDVHFCGVNFADILVCNGQYQEKPPLPFIPGMEFSGAVLETGTDVNNVKKGDRVIGVTSNLNAMAEECITDQKTLWRIPENVSLQDAAVLPVSYGTAILAVEHRARTQPGETVLVTAAAGATGLAVIDVATNVLRAKVIAAAGSDEKCKLAMQRGAQSSVNYSQGSLKDAVKKLVGSGGVNVAIDMVGGDVFLESVRSLAWEGRIVVLGFAGGNIASLPSNLLLLKNISAMGLYWGRYQHQDFALFSKSLSSALRYCQQGLIRPHIGAVFKLEKINDAFLHVIQRKSTGKVLLSLK", "length": 351, "header": "tr|A0A8C2QFB0-1|A0A8C2QFB0_CRIGR Isoform 1 of Quinone oxidoreductase-like protein 2 OS=Cricetulus griseus OX=10029 GN=LOC100752419 PE=3 SV=1 CANONICAL=A0A8C2QFB0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250831", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250831" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFE9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762717", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFE9", "locus": {} } ], "crossref": [ { "id": "100762717", "url": "https://www.ncbi.nlm.nih.gov/gene/100762717", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762717", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762717", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QFE9", "url": "https://www.orthodb.org/?gene=A0A8C2QFE9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13774:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13774:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250831", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250831", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFE9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLPIFIADAFTTTAFRGNPAAVCLLENTLTEDAHQQIAREMNLSETAFIRKLQPSDNFTQSSCFGLRWFTPVSEVPLCGHATLASAAVLFHKIKNTNSTLTFATMSGELKARRAEDGIVLDFPLYPAFPQDFHEVEGLIKAAIGDTLVQDIQYSPDTRKLLVRLSDSYSRSFLETLKVNTKPLPGIEKTGKVKGLILTLRGQPEGQTPQYDFYSRYFAPWVGLPEDPVTGSAHTVLSSYWSQQLGKKEMRAFQCSRRGGELDISLRPDGRVDMKGGAAIVLEGTLTV", "length": 288, "header": "tr|A0A8C2QFE9-1|A0A8C2QFE9_CRIGR Isoform 1 of Phenazine biosynthesis-like domain-containing protein OS=Cricetulus griseus OX=10029 GN=LOC100762717 PE=3 SV=1 CANONICAL=A0A8C2QFE9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFE9/entry", "sequence": { "sequence": "MKLPIFIADAFTTTAFRGNPAAVCLLENTLTEDAHQQIAREMNLSETAFIRKLQPSDNFTQSSCFGLRWFTPVSEVPLCGHATLASAAVLFHKIKNTNSTLTFATMSGELKARRAEDGIVLDFPLYPAFPQDFHEVEGLIKAAIGDTLVQDIQYSPDTRKLLVRLSDSYSRSFLETLKVNTKPLPGIEKTGKVKGLILTLRGQPEGQTPQYDFYSRYFAPWVGLPEDPVTGSAHTVLSSYWSQQLGKKEMRAFQCSRRGGELDISLRPDGRVDMKGGAAIVLEGTLTV", "length": 288, "header": "tr|A0A8C2QFE9-1|A0A8C2QFE9_CRIGR Isoform 1 of Phenazine biosynthesis-like domain-containing protein OS=Cricetulus griseus OX=10029 GN=LOC100762717 PE=3 SV=1 CANONICAL=A0A8C2QFE9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307764" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFQ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpr160", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFQ5", "locus": {} } ], "crossref": [ { "id": "100766599", "url": "https://www.ncbi.nlm.nih.gov/gene/100766599", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766599", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766599", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QFQ5", "url": "https://www.orthodb.org/?gene=A0A8C2QFQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15573", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15573", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15573:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15573:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035307764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307764", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTALSSENCSFQHLLHQSKQPLDVNCLLFLIILGKILLNILILGMKRKDTYWSFMEYFCFSLAFVDLLLLVNISILSYFRDFVVLGIRFTKYHICLLTQIISFTYGVLHYPVCLLACIDHYLNLSRATKHSSKWQKFFYFLTVILIWTSVFAYVLGEPAISQSLKTHRASMYQCPAYVSTQSYWLSLSMLMILLVAFLISWPEVVALVQAIRIASYMNKTILYFPFPSHSGYTVRSKEALLPRLIVCFLGTWFPFVALQVLTLSLGVQIPAYVEMNVPWLYFVNSFLIAAVYWFNSQKLYIRDSTLPVDPFVNWKCCFVPMHRLKQVERPVSIIIC", "length": 336, "header": "tr|A0A8C2QFQ5-1|A0A8C2QFQ5_CRIGR Isoform 1 of Probable G-protein coupled receptor 160 OS=Cricetulus griseus OX=10029 GN=Gpr160 PE=4 SV=1 CANONICAL=A0A8C2QFQ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFQ5/entry", "sequence": { "sequence": "MTALSSENCSFQHLLHQSKQPLDVNCLLFLIILGKILLNILILGMKRKDTYWSFMEYFCFSLAFVDLLLLVNISILSYFRDFVVLGIRFTKYHICLLTQIISFTYGVLHYPVCLLACIDHYLNLSRATKHSSKWQKFFYFLTVILIWTSVFAYVLGEPAISQSLKTHRASMYQCPAYVSTQSYWLSLSMLMILLVAFLISWPEVVALVQAIRIASYMNKTILYFPFPSHSGYTVRSKEALLPRLIVCFLGTWFPFVALQVLTLSLGVQIPAYVEMNVPWLYFVNSFLIAAVYWFNSQKLYIRDSTLPVDPFVNWKCCFVPMHRLKQVERPVSIIIC", "length": 336, "header": "tr|A0A8C2QFQ5-1|A0A8C2QFQ5_CRIGR Isoform 1 of Probable G-protein coupled receptor 160 OS=Cricetulus griseus OX=10029 GN=Gpr160 PE=4 SV=1 CANONICAL=A0A8C2QFQ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFQ5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278703", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278703" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFS1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ajm1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFS1", "locus": {} } ], "crossref": [ { "id": "100762980", "url": "https://www.ncbi.nlm.nih.gov/gene/100762980", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038825", "database": "InterPro", "categories": [ "Protein Classification" ] 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"https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFS1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762980", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762980", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFS1" } ], "pmid": "" }, { "name": "apical junction complex", "id": "GO:0043296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043296", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFS1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell-cell junction organization", "id": "GO:0045216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045216", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFS1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFS1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QFS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFS1" }, { "id": "PF26649", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26649" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Apical 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"table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QFT0-1", "uniprot_ac": "A0A8C2QFT0", "uniprot_id": "A0A8C2QFT0_CRIGR", "mass": { "chemical_mass": 59685.0, "monoisotopic_mass": 59685.0 }, "refseq": { "ac": "XP_007647728", "name": "uncharacterized protein KIAA0895 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647728" }, "gene_names": [ { "name": "Kiaa0895", "type": "recommended", "evidence": [ { "id": "A0A8C2QFT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0" } ] }, { "name": "Kiaa0895", "type": "synonym", "evidence": [ { "id": "XP_007647728", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647728" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA0895 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QFT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA0895 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007647728", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647728" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614607.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647728", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647728" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFT0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa0895", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0", "locus": {} } ], "crossref": [ { "id": "100768942", "url": "https://www.ncbi.nlm.nih.gov/gene/100768942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768942", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNHEIGT", "url": "https://omabrowser.org/oma/group/CNHEIGT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QFT0", "url": "https://www.orthodb.org/?gene=A0A8C2QFT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31817:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31817:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647728", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647728", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFT0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLESIRVTEKLHWPEHELAKKSVLNAEEQLIIDSKRSFSSLSSGVLKDTFTTGTSSYNVLLQTKEERKHHSQKQFSSTFSKRRRKPSKSPSSSNILKDPHRMTALVPVTSTGTWYCLDRQSAVFIGNSVPSPLKFTHDISVTGSSLALPPKPKSKVKCRSVTPLPKPKQQPQLCRSFEKGDDLSGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPALPGVLAKYSNASDRFLKQSIKIMELTLQKYGSYEKFEQATGGSLLTKTRIWSHVRKYMLKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRAVNNLQQPWNSWPGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGKFVQDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRFRDSIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLEKIMEVNELTDAELKALM", "length": 520, "header": "tr|A0A8C2QFT0-1|A0A8C2QFT0_CRIGR Isoform 1 of Uncharacterized protein KIAA0895 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0895 PE=4 SV=1 CANONICAL=A0A8C2QFT0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0/entry", "sequence": { "sequence": "MLESIRVTEKLHWPEHELAKKSVLNAEEQLIIDSKRSFSSLSSGVLKDTFTTGTSSYNVLLQTKEERKHHSQKQFSSTFSKRRRKPSKSPSSSNILKDPHRMTALVPVTSTGTWYCLDRQSAVFIGNSVPSPLKFTHDISVTGSSLALPPKPKSKVKCRSVTPLPKPKQQPQLCRSFEKGDDLSGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPALPGVLAKYSNASDRFLKQSIKIMELTLQKYGSYEKFEQATGGSLLTKTRIWSHVRKYMLKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRAVNNLQQPWNSWPGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGKFVQDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRFRDSIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLEKIMEVNELTDAELKALM", "length": 520, "header": "tr|A0A8C2QFT0-1|A0A8C2QFT0_CRIGR Isoform 1 of Uncharacterized protein KIAA0895 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0895 PE=4 SV=1 CANONICAL=A0A8C2QFT0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFT0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFT0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFT0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768942", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286Y841-1", "protein_name": "Tyrosine carboxypeptidase MATCAP2 isoform X1", "gene_name": "matcap2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMLESIDVTENLRWPEMETSKSCVLSPMEKPVSPSQLHLEHISSGILKDLFNNATNSYNTLLQKESDAQENPKHSTGPKRVSTATHRERHLPSLAPLSMSGLAFGCRDTRHAQSVFSCFSTSNSKQTNSITVLGSSIRLSPCPISKPKNSCPARTKLPQLPRALSTARDGENSLKKLCILTAIKPFNVEKEKARFFKSDFKNNPQFEYSNPLPPQVLAKYNNASDRFLTQAVRIMELALQKYGSYEKFEQATGGNLLTKSRIGSHVKKYMEKEGCTGEIVVHLTDDLLSRASMTVVNGRPTLTINISTAREQWLEGMLRHEIGTHYFRGINNSRQPWSSIAGRKKHGLRPINPTEEGLASIHSVLFRKDPILWRAALLYYTVYQASHMSFSQLFHDLRRFVHDPNTRWDYCVRAKRGQTDTTLPGCFCKDQVYLDGILKILRHREKIDFQLLMALGKVSYEDVERLKGLALMDHVRIPHFLQDQAHYTEQLHKIMEVNQLTDAELSTLI", "length": 509 }, "evidence": [ { "id": "A0A8C2QFT0", "url": "https://omabrowser.org/oma/group/A0A8C2QFT0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0Z1J9-1", "protein_name": "Microtubule associated tyrosine carboxypeptidase 2", "gene_name": "KIAA0895", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLSKSTSCYLAAVCRWEHITQAAGCMAAILFEMVPPQPTEQQEKLHWPKQELSKKSVLSPEEHKLNVSNEKGLQQPSPGVLKDIFTTGTSSYNVLLQSKEEKKHHAQKQSPAHHKKHRKATKCSSTSRSNEHRKIKVPLPLLSSGWYCLDQQPSVLVSSPVSNGVKLANSISAAGNGIGLPPRPRSRAKRHCNQTKPKQSQSSKSRGKEGDDSGRKLCLLTAIKPSNVEKEKMKFFKSDFTYNPQFEYANPALPNVLAKHSQASDRFLKQSINIMERTLQKYGSYEKFEQATGGSLLTKSRIWNHVRKYMVKEGCLGEIVVHLTEDLLSRASMTVVNGRPTLTINISTAREHWLEGMLRHEIGTHYFRGFNNNSQPWCNWNGRRKHGLKPINPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFSQLFQDVGKFVQDPNTRWDYCVRAKRGWTDTSQPGCFNKDQVYLDGILRILRYRESIDFHLLTALGKISYEDVDRLKGLAVIENMRVPHFLQDHARYMEHLEKIMEVNELTDEELQDLID", "length": 551 }, "evidence": [ { "id": "A0A8C2QFT0", "url": "https://omabrowser.org/oma/group/A0A8C2QFT0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TQM1-1", "protein_name": "Microtubule associated tyrosine carboxypeptidase 2", "gene_name": "MATCAP2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGSARKFSHLGKRVHRPGLRVSITRRPKRWFKFRKRKASKRPRSNHKAVARRIKVKISTSEKLHWPEQELAKKSILNAEASLIIDSKRSISHLSPAILKDIFTTGTSSYNVLLQSKEEKKHHSQKQPSSTGSKRCRKPSKSPSSSRSKDRKMKAPVPVMSSSTWYCLERQPAVFVTGSVSSPVKFTHDISVTGNPIVLPPKPKNERKVKRHLFSTLPKPKPKPQPLLSRSFEKGDDFSGKKFCILTAIKPTNLEKEKLRFFKSDYTYNPQFEYANPSLPSVLAKHSNASDRFLKQIVVHLTEDLLSRASMTVVNGCPTLTINVSTAREHWLEGMLRHEIGTHYFRGINNLQQPWNSWTGRKKLELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYRASQMSFCELFRDIGKFVKDPNTRWDYCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRYRETIDFHLLTTLGKVSYEDVDRLKGLAVTENMRVPHFLQDHSRYMEHLEKIMEVNELTDRELKDLIC", "length": 528 }, "evidence": [ { "id": "A0A8C2QFT0", "url": "https://omabrowser.org/oma/group/A0A8C2QFT0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7TQE7-1", "protein_name": "Putative tyrosine carboxypeptidase MATCAP2", "gene_name": "Matcap2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLESIRVTEKLHWPEHELAKKFVLNAEEALITDSKRSFSSLSSGILKDTFTTGTSSYNVLLQSKEEKKHRSQKRFSSASSKQHRKPSKSPSSSHSKDPSRMTALVPGTGAGTWYCLDGQSAVFVTSSVPSPVKFTRDISITGSGLALPPKPKSKVKRRNLTRLPKPKQQPQLCRSFERGDDISGKKLCILTAIKPINLEKEKLRFFKSDYTYNPQFEYANPTLPGVLAKHSNASDRFLKQSINIMELTLQKYGSYEKFEQATGGSLLSKTRIWSHVRKYMVKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRGINNLQQPWNSWIGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYKASHMSFCELFKDIGKFVKDPNTRWDYCVRAKRGWTDTSEPGCFSKDQVYLDGVLQILRFRESIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHFLHDHSRYMEHLERIMEVNELTDAELKNLI", "length": 519 }, "evidence": [ { "id": "A0A8C2QFT0", "url": "https://omabrowser.org/oma/group/A0A8C2QFT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NCT3-1", "protein_name": "Putative tyrosine carboxypeptidase MATCAP2", "gene_name": "MATCAP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307590", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307590" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFX5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100758294", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFX5", "locus": {} } ], "crossref": [ { "id": "100758294", "url": "https://www.ncbi.nlm.nih.gov/gene/100758294", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028205", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028205", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758294", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758294", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF14672", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14672", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307590", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307590", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFX5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFX5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCQQSQQKCPPPPPKCKTPQCPPVSSCCGSSSGGCCSSGGGSCCLSHHKPRFSLRRRRHSSGCCSSSSSGGSSCCGSSCGSSSGSSCCGSSSGSSSCCGGSSGGSSCCGGSSGGSSGGSSCCGGSSGGSSGGSSCCGGSSGGSSGGSCCGSSGGGGSSGSSSQQSSGSGCCSGGCC", "length": 177, "header": "tr|A0A8C2QFX5-1|A0A8C2QFX5_CRIGR Isoform 1 of Late cornified envelope protein 5A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758294 PE=3 SV=1 CANONICAL=A0A8C2QFX5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFX5/entry", "sequence": { "sequence": "MSCQQSQQKCPPPPPKCKTPQCPPVSSCCGSSSGGCCSSGGGSCCLSHHKPRFSLRRRRHSSGCCSSSSSGGSSCCGSSCGSSSGSSCCGSSSGSSSCCGGSSGGSSCCGGSSGGSSGGSSCCGGSSGGSSGGSSCCGGSSGGSSGGSCCGSSGGGGSSGSSSQQSSGSGCCSGGCC", "length": 177, "header": "tr|A0A8C2QFX5-1|A0A8C2QFX5_CRIGR Isoform 1 of Late cornified envelope protein 5A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758294 PE=3 SV=1 CANONICAL=A0A8C2QFX5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306087", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306087" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFY4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837551", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY4", "locus": {} } ], "crossref": [ { "id": "113837551", "url": "https://www.ncbi.nlm.nih.gov/gene/113837551", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837551", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837551", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QFY4", "url": "https://www.orthodb.org/?gene=A0A8C2QFY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14491", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14491", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14491:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14491:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306087", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306087", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFY4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQPQGDANPLPKASDEPVKQNVPSALQIRSNRTDFCSLGRYKGQTVSDSATISREPNVHSTPTVTRAIGTRRRGAPRELLGLQGAAPSRWLSEECLEPAAPGSRRSSGQGSSRVCLEPREHAWILAAAEGRFEVLLELLEIEPSLLLRDDPITGYSVLHWLAKHGRHEELIKLYDFAQRRGLPIDVSAPGSGGLTPLHLAALQGHDMVIKVLVGALGADPTRRDHSGHRPCHYLRPDASQSLRELSGAEEWEMARDKERDKGNNNSTTTTGWSLRRSTPSASRLKSLGTHYKESAQPAKGKASGSQGGHGNGLLRHLFPFVQDR", "length": 325, "header": "tr|A0A8C2QFY4-1|A0A8C2QFY4_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein SOWAHD-like OS=Cricetulus griseus OX=10029 GN=LOC113837551 PE=3 SV=1 CANONICAL=A0A8C2QFY4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY4/entry", "sequence": { "sequence": "MAQPQGDANPLPKASDEPVKQNVPSALQIRSNRTDFCSLGRYKGQTVSDSATISREPNVHSTPTVTRAIGTRRRGAPRELLGLQGAAPSRWLSEECLEPAAPGSRRSSGQGSSRVCLEPREHAWILAAAEGRFEVLLELLEIEPSLLLRDDPITGYSVLHWLAKHGRHEELIKLYDFAQRRGLPIDVSAPGSGGLTPLHLAALQGHDMVIKVLVGALGADPTRRDHSGHRPCHYLRPDASQSLRELSGAEEWEMARDKERDKGNNNSTTTTGWSLRRSTPSASRLKSLGTHYKESAQPAKGKASGSQGGHGNGLLRHLFPFVQDR", "length": 325, "header": "tr|A0A8C2QFY4-1|A0A8C2QFY4_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein SOWAHD-like OS=Cricetulus griseus OX=10029 GN=LOC113837551 PE=3 SV=1 CANONICAL=A0A8C2QFY4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFY4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFY4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837551", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837551", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 265, "end_pos": 267 }, { "start_pos": 266, "end_pos": 268 }, { "start_pos": 32, "end_pos": 34 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QFY5-1", "uniprot_ac": "A0A8C2QFY5", "uniprot_id": "A0A8C2QFY5_CRIGR", "mass": { "chemical_mass": 19774.0, "monoisotopic_mass": 19774.0 }, "refseq": { "ac": "XP_035293040", "name": "calcium-binding protein 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293040" }, "gene_names": [ { "name": "Cabp5", "type": "recommended", "evidence": [ { "id": "A0A8C2QFY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5" } ] }, { "name": "Cabp5", "type": "synonym", "evidence": [ { "id": "XP_035293040", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293040" } ] } ], "protein_names": [ { "name": "Calcium-binding protein 5", "type": "synonym", "evidence": [ { "id": "A0A8C2QFY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5/entry#names_and_taxonomy" } ] }, { "name": "calcium-binding protein 5", "type": "synonym", "evidence": [ { "id": "XP_035293040", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293040" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615727.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293040", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293040" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFY5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cabp5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5", "locus": {} } ], "crossref": [ { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118237857", "url": "https://www.ncbi.nlm.nih.gov/gene/118237857", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118237857", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237857", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DFVEMMT", "url": "https://omabrowser.org/oma/group/DFVEMMT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QFY5", "url": "https://www.orthodb.org/?gene=A0A8C2QFY5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45917", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45917", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45917:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45917:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293040", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293040", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFY5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQFPMGPACIFLRKGIAEKQRERPLGQDEIDELREAFLEFDKDRDGFISYKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFEDFVELMTPKLLAETAGMIGVQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPREISEVVQEADINGDGTVDFEEFVKMMSR", "length": 173, "header": "tr|A0A8C2QFY5-1|A0A8C2QFY5_CRIGR Isoform 1 of Calcium-binding protein 5 OS=Cricetulus griseus OX=10029 GN=Cabp5 PE=4 SV=1 CANONICAL=A0A8C2QFY5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5/entry", "sequence": { "sequence": "MQFPMGPACIFLRKGIAEKQRERPLGQDEIDELREAFLEFDKDRDGFISYKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFEDFVELMTPKLLAETAGMIGVQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPREISEVVQEADINGDGTVDFEEFVKMMSR", "length": 173, "header": "tr|A0A8C2QFY5-1|A0A8C2QFY5_CRIGR Isoform 1 of Calcium-binding protein 5 OS=Cricetulus griseus OX=10029 GN=Cabp5 PE=4 SV=1 CANONICAL=A0A8C2QFY5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFY5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFY5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFY5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118237857", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237857", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E7FEW4-1", "protein_name": "Calcium-binding protein 5a", "gene_name": "cabp5a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTACIFLRGAKIDRELADDEIEELREAFNEFDKDKDGLISCKDLGNLMRTMGYMPTEMELIELGQNINMNLGGRVDFEDFVELMTPKLLAETAGMIGVKELRDAFKEFDMDGDGAITTEELRCAMTKLLGEHMNRREIDAVVREADNNGDGTVDFEEFVKMLSSV", "length": 165 }, "evidence": [ { "id": "A0A8C2QFY5", "url": "https://omabrowser.org/oma/group/A0A8C2QFY5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9JLK3-1", "protein_name": "Calcium-binding protein 5", "gene_name": "Cabp5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQFPMGPACIFLRKGIAEKQRERPLGQDELDELREAFLEFDKDQDGFISYKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFEDFVELMTPKLLAETAGMIGVQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPREIAEVVQEADINGDGTVDFEEFVKMMSR", "length": 173 }, "evidence": [ { "id": "A0A8C2QFY5", "url": "https://omabrowser.org/oma/group/A0A8C2QFY5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9N1Q8-1", "protein_name": "Calcium-binding protein 5", "gene_name": "CABP5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQFPMGPACIFLRKGIAEKQRERPLGPDEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLTSQEISEVVQEADINGDGTVDFEEFVKMMSR", "length": 173 }, "evidence": [ { "id": "A0A8C2QFY5", "url": 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This record is derived from a genomic sequence (NW_003613647.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301036", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301036" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QG26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG26" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773462", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG26", "locus": {} } ], "crossref": [ { "id": "100773462", "url": "https://www.ncbi.nlm.nih.gov/gene/100773462", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100773462", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773462", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QG26", "url": "https://www.orthodb.org/?gene=A0A8C2QG26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035301036", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301036", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QG26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QG26-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLPLRLPYCSPARRLRAVLLFPYFRAPVTPPPSPVCSQEPDSELEGGSPESCAEEEVWLYSSGHWGRVLSGGVGAIPQGWAWPGSPSGPPAPQPRHRPSTQPTPVLAPSAATSPIAVSWHSQSIRPAVLGRRPSVAQSPRRAKERQPGTASAGGKEPEFRVVNIHNERRWRSLEEPNPAFSVPRTLAIRGVASRSLCPGKRSGKLNKPASASPEKYQGSCRTVTLEFKGVEKPR", "length": 235, "header": "tr|A0A8C2QG26-1|A0A8C2QG26_CRIGR Isoform 1 of Uncharacterized protein LOC100773462 OS=Cricetulus griseus OX=10029 GN=LOC100773462 PE=4 SV=1 CANONICAL=A0A8C2QG26-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QG26-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG26/entry", "sequence": { "sequence": "MSLPLRLPYCSPARRLRAVLLFPYFRAPVTPPPSPVCSQEPDSELEGGSPESCAEEEVWLYSSGHWGRVLSGGVGAIPQGWAWPGSPSGPPAPQPRHRPSTQPTPVLAPSAATSPIAVSWHSQSIRPAVLGRRPSVAQSPRRAKERQPGTASAGGKEPEFRVVNIHNERRWRSLEEPNPAFSVPRTLAIRGVASRSLCPGKRSGKLNKPASASPEKYQGSCRTVTLEFKGVEKPR", "length": 235, "header": "tr|A0A8C2QG26-1|A0A8C2QG26_CRIGR Isoform 1 of Uncharacterized protein LOC100773462 OS=Cricetulus griseus OX=10029 GN=LOC100773462 PE=4 SV=1 CANONICAL=A0A8C2QG26-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 30, "start_aa": "Thr", "end_pos": 30, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr30", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301476", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301476" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100768439", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768439", "url": "https://www.ncbi.nlm.nih.gov/gene/100768439", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768439", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768439", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HIVNECM", "url": "https://omabrowser.org/oma/group/HIVNECM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QG89", "url": "https://www.orthodb.org/?gene=A0A8C2QG89", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24393", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24393", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24393:SF143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24393:SF143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301476", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301476", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QG89-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPVTFEDVAVNFTLGEWALLDSYQKELYRDVMKETFSNLISIGRTEEENIGEDYQNIRRNLSTHVIKGFYEFQHGIQYGEAHQQIREHIVNECMPPGIVVYENSVCENDAIGLSQSAMHLRGPTVEKPYEYQECMEKPFKHKFWKNFTYSESFLTLENPSRKNPYENNLSNEHCRSLISEQDYDTAHSGDNLHEYKQFETALTACSYVQSFDKPQTGEKPFVCKQCGEAFINSSHLIKHHKIHTREKTFACKYCGKAFIHPRACYNHERTHTGDRPYVCKQCGKACIHSYHLLQHERSHTREKLYACKQCGKVFGRSSYLRKHERIHTGEKPYLCKHCGKAFSDPTTRNNHERTHTGEKHYVCKQCGKAFIRSSQLLIHERIHTGEKPYSCKHCGKAFTYSSACYIHERIHTGEKPYVCKQCGKAFTCSTYLHKHERIHTGEKPYSCKQCGKAFIQHRACYNHERIHTGEKPYVCVQCGHAFTFSKSLQIHERNHTGEKPYVCKQCGKAFTCSTYLHQHERTHNEKKSSG", "length": 531, "header": "tr|A0A8C2QG89-1|A0A8C2QG89_CRIGR Isoform 1 of Zinc finger protein 709 OS=Cricetulus griseus OX=10029 GN=LOC100768439 PE=3 SV=1 CANONICAL=A0A8C2QG89-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QG89-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89/entry", "sequence": { "sequence": "MEPVTFEDVAVNFTLGEWALLDSYQKELYRDVMKETFSNLISIGRTEEENIGEDYQNIRRNLSTHVIKGFYEFQHGIQYGEAHQQIREHIVNECMPPGIVVYENSVCENDAIGLSQSAMHLRGPTVEKPYEYQECMEKPFKHKFWKNFTYSESFLTLENPSRKNPYENNLSNEHCRSLISEQDYDTAHSGDNLHEYKQFETALTACSYVQSFDKPQTGEKPFVCKQCGEAFINSSHLIKHHKIHTREKTFACKYCGKAFIHPRACYNHERTHTGDRPYVCKQCGKACIHSYHLLQHERSHTREKLYACKQCGKVFGRSSYLRKHERIHTGEKPYLCKHCGKAFSDPTTRNNHERTHTGEKHYVCKQCGKAFIRSSQLLIHERIHTGEKPYSCKHCGKAFTYSSACYIHERIHTGEKPYVCKQCGKAFTCSTYLHKHERIHTGEKPYSCKQCGKAFIQHRACYNHERIHTGEKPYVCVQCGHAFTFSKSLQIHERNHTGEKPYVCKQCGKAFTCSTYLHQHERTHNEKKSSG", "length": 531, "header": "tr|A0A8C2QG89-1|A0A8C2QG89_CRIGR Isoform 1 of Zinc finger protein 709 OS=Cricetulus griseus OX=10029 GN=LOC100768439 PE=3 SV=1 CANONICAL=A0A8C2QG89-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"MEPVTFEDVAVNFTLGEWALLDSYQKELYRDVMKETFSNLISIGKTEEENIEDYQNIRRNLSTHVVEGFYEFERGIQYKETHQHIQEHAVHKYMPPGIVVYENIACENGVIDLSQSDVHPRVLTVEKSDERQKCTEKPVQHKKCWKDFVYSESFLTHEKPSREKPYGNEQFNDPCGSLTSYQGYETTHNGDNLREYKQLETALMTCSYVQSYERIQSGDKPFVCKQCGEAFVNSSHLIKHYKIHTREKTFACKYCGKAFIHPRACYNHERTHTGDRPYVCKQCGKACIHSYHLLQHERSHTREKLYACKQCGKVFGRSSYLRKHERIHTGEKPYLCKHCGKAFSDPTTRNNHERTHTGEKHYVCKQCGKAFIRSSQLLIHERIHTGEKPYSCKHCGKAFTYSSACYIHERIHTGEKPYVCKQCGKAFTCSTYLHKHERIHTGEKPYSCKQCGKAFIQHRACYNHERIHTGEKPYVCVQCGHAFTFSKSLQIHERNHTGEKPYVCKQCGKAFTCSTYLHQHERTHSEKKSNG", "length": 531 }, "evidence": [ { "id": "A0A8C2QG89", "url": "https://omabrowser.org/oma/group/A0A8C2QG89/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B8JJZ7-1", "protein_name": "Zinc finger protein 81", "gene_name": "Zfp81", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPVTFEDVAVNFTLGEWALLDSYQKELYRDVMKETFSNLISIGKSEEDNIEDYQNIRRNLSTLMVEGFYEFERGIQYREMHQQIQEHIVNKYIPPGIVVYENSASKNDVIGLSQSDVHLRLLTVEKPYEYQKCMEKPIKHKKYWKDLAYSESFLAHENPPKEKPYGNKQSNDPCRSLTSDQDYETTHTGDNLHEYKQFETAIMTCSYGQSYERIQTGEKPFVCKQCGEAFVNSSHLIKHYKIHTREKTFACKYCGKAFIHPRACYNHERTHTGDRPYVCKQCGKACIHSYHLLQHERSHTREKLYACKQCGKVFGRSSYLRKHERIHTGEKPYLCKHCGKAFSDPTTRNNHERTHTGEKHYVCKQCGKAFIRSSQLLIHERIHTGEKPYSCKHCGKAFTYSSACYIHERIHTGEKPYVCKQCGKAFTCSTYLHKHERIHTGEKPYSCKQCGKAFIQHRACYNHERIHTGEKPYVCVQCGHAFTFSKSLQIHERNHTGEKPYVCKQCGKAFTCSTYLHQHERTHSEKKSSG", "length": 531 }, "evidence": [ { "id": "A0A8C2QG89", "url": "https://omabrowser.org/oma/group/A0A8C2QG89/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QG89" } ], "pmid": "" }, { "name": "DNA-binding 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{ "name": "Fam104a", "type": "synonym", "evidence": [ { "id": "XP_027281583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281583" } ] } ], "protein_names": [ { "name": "Protein FAM104A isoform X3", "type": "synonym", "evidence": [ { "id": "A0A8C2QGE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGE0/entry#names_and_taxonomy" } ] }, { "name": "protein FAM104A isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027281583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281583" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616146.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513859", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513859" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756301", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2", "locus": {} } ], "crossref": [ { "id": "100756015", "url": "https://www.ncbi.nlm.nih.gov/gene/100756015", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100756301", "url": "https://www.ncbi.nlm.nih.gov/gene/100756301", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756015", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756015", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:100756301", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756301", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QPAPCRM", "url": "https://omabrowser.org/oma/group/QPAPCRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QGJ2", "url": "https://www.orthodb.org/?gene=A0A8C2QGJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48425", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48425", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48425:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48425:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01500", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01500", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513859", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513859", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGSCCGSFSSQSCGGCCQPCCCRDPCCCRPVSCQTTVCRPVTCVPHCTRPICEPCRRPICCDPCSLQQGCCRPITCCPTSCTAVVCRPCCWASTCCQPISVQAPCCRPPCCQPAPCRTTCRTSPCNTCC", "length": 130, "header": "tr|A0A8C2QGJ2-1|A0A8C2QGJ2_CRIGR Isoform 1 of Keratin-associated protein 2-1-like OS=Cricetulus griseus OX=10029 GN=LOC100756301 PE=4 SV=1 CANONICAL=A0A8C2QGJ2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QGJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2/entry", "sequence": { "sequence": "MTGSCCGSFSSQSCGGCCQPCCCRDPCCCRPVSCQTTVCRPVTCVPHCTRPICEPCRRPICCDPCSLQQGCCRPITCCPTSCTAVVCRPCCWASTCCQPISVQAPCCRPPCCQPAPCRTTCRTSPCNTCC", "length": 130, "header": "tr|A0A8C2QGJ2-1|A0A8C2QGJ2_CRIGR Isoform 1 of Keratin-associated protein 2-1-like OS=Cricetulus griseus OX=10029 GN=LOC100756301 PE=4 SV=1 CANONICAL=A0A8C2QGJ2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756015", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756015", "resource": "KEGG Pathway" }, { "id": "cge:100756301", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756301", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZBD2-1", "protein_name": "Keratin associated protein 2-4", "gene_name": "Krtap2-4l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTGSCCGSFSSQSCGGCCQPCCCRDPCCCRPVSCQTTVCRPVTCVPHYTRPICEPCRRPICCDPCSLQQGCCRPITCCPSSCTAVVCRPCCWASTCCQPISVQAPCCRPPCCQPAPCRTTCRTSPCNTCC", "length": 130 }, "evidence": [ { "id": "A0A8C2QGJ2", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ2/", "database": "OMA" }, { "id": "A0A8C2QGJ2", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H8-1", "protein_name": "Keratin-associated protein 2-3", "gene_name": "KRTAP2-3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTGSCCGSTLSSLSYGGGCCQPCCCRDPCCCRPVTCQTTVCRPVTCVPRCTRPICEPCRRPVCCDPCSLQEGCCRPITCCPSSCTAVVCRPCCWATTCCQPVSVQSPCCRPPCGQPTPCSTTCRTSSC", "length": 128 }, "evidence": [ { "id": "A0A8C2QGJ2", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9BYU5-1", "protein_name": "Keratin-associated protein 2-1", "gene_name": "KRTAP2-1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTGSCCGSTFSSLSYGGGCCQPCCCRDPCCCRPVTCQTTVCRPVTCVPRCTRPICEPCRRPVCCDPCSLQEGCCRPITCCPSSCTAVVCRPCCWATTCCQPVSVQSPCCRPPCGQPTPCSTTCRTSSC", "length": 128 }, "evidence": [ { "id": "A0A8C2QGJ2", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QGJ7-1", "uniprot_ac": "A0A8C2QGJ7", "uniprot_id": "A0A8C2QGJ7_CRIGR", "mass": { "chemical_mass": 40634.0, "monoisotopic_mass": 40634.0 }, "refseq": { "ac": "XP_003497042", "name": "methyltransferase-like protein 24", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497042" }, "gene_names": [ { "name": "Mettl24", "type": "recommended", "evidence": [ { "id": "A0A8C2QGJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7" } ] }, { "name": "Mettl24", "type": "synonym", "evidence": [ { "id": "XP_003497042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497042" } ] } ], "protein_names": [ { "name": "Methyltransferase-like protein 24", "type": "synonym", "evidence": [ { "id": "A0A8C2QGJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7/entry#names_and_taxonomy" } ] }, { "name": "methyltransferase-like protein 24", "type": "synonym", "evidence": [ { "id": "XP_003497042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497042" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613639.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497042" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mettl24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7", "locus": {} } ], "crossref": [ { "id": "100773288", "url": "https://www.ncbi.nlm.nih.gov/gene/100773288", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773288", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773288", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TQIACDH", "url": "https://omabrowser.org/oma/group/TQIACDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QGJ7", "url": "https://www.orthodb.org/?gene=A0A8C2QGJ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32026", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32026", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32026:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32026:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497042", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATARPPGRGSGALPLWLLGAALLLGLRLCMELHRPGSGSPGRHDPPGPPRPHLLSPPDPPRGARRRQVTYVRSGRRALPRGGGTTTLEPSCCTPGGLPSRKGPRWHIELQPWAGPAQSLDEEALRFLSYISTTQIACDHMGTDSLATDSSPATKPWLVCLDDRFGLAHQIRSKQCRLYSLGLGSDDTHFEVSMANDGCEVHRFDPSVKSAHVLESQHLWHHRLSIDWRDPHPAVAAQKSHSNTRKLGSILNEFGHHKIDILKADLESAEWKVLENLILEDVLEQIGQLVFEIHLHWPGFEVSGSESSVVRFWYSLLKELEQKDFRLFHTYKDLSKPQLFLKKDIFNASSCYTLSWVNTRWK", "length": 362, "header": "tr|A0A8C2QGJ7-1|A0A8C2QGJ7_CRIGR Isoform 1 of Methyltransferase-like protein 24 OS=Cricetulus griseus OX=10029 GN=Mettl24 PE=4 SV=1 CANONICAL=A0A8C2QGJ7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QGJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7/entry", "sequence": { "sequence": "MATARPPGRGSGALPLWLLGAALLLGLRLCMELHRPGSGSPGRHDPPGPPRPHLLSPPDPPRGARRRQVTYVRSGRRALPRGGGTTTLEPSCCTPGGLPSRKGPRWHIELQPWAGPAQSLDEEALRFLSYISTTQIACDHMGTDSLATDSSPATKPWLVCLDDRFGLAHQIRSKQCRLYSLGLGSDDTHFEVSMANDGCEVHRFDPSVKSAHVLESQHLWHHRLSIDWRDPHPAVAAQKSHSNTRKLGSILNEFGHHKIDILKADLESAEWKVLENLILEDVLEQIGQLVFEIHLHWPGFEVSGSESSVVRFWYSLLKELEQKDFRLFHTYKDLSKPQLFLKKDIFNASSCYTLSWVNTRWK", "length": 362, "header": "tr|A0A8C2QGJ7-1|A0A8C2QGJ7_CRIGR Isoform 1 of Methyltransferase-like protein 24 OS=Cricetulus griseus OX=10029 GN=Mettl24 PE=4 SV=1 CANONICAL=A0A8C2QGJ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773288", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773288", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BI29-1", "protein_name": "Methyltransferase like 24", "gene_name": "METTL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAWQRPPRRGCGSLQRCLLGAALLLGLRLCAELRRASLRPPASSAPPGRAPRPPRPHLPPAPGLQRGASWRQVTYVRSGRRAPPGGGGSGTPKPCCAPHGSPRRKGPRWHIDLQPWAGPARSLDEEALRFLRYISTIQIACDHMSTDSLATDSSPTKKPWSVCLDDRFGLAHQIHSKQCRLYSLGLGSDDTRFEVGMANDGCEVHRFDPSVKSAHVLENERLWYHRLSINWRDPHPAVAAQKPYSSTRKLRTILNEFGHHKIDILKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSDSSVVRFWYSLLKELELQDFRLFHSYKDLSKPQIFLRKNIFNASSCYTLSWVNTRWK", "length": 365 }, "evidence": [ { "id": "A0A8C2QGJ7", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0YU23-1", "protein_name": "Methyltransferase like 24", "gene_name": "METTL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPKERPLWRRAAFRLCVLSAALLLCLQLAMRRSWCPEEKLRLPAVAASGRAVPQPRGTAAAPGRRRVTYVRSGRRGGRPGCCPPGRKTVRWHIELQPWASPTPSLNYEALRFLKYISTSQISCEHMNVSSLRGNSEATKRPWSVCLDERFSLIHRLRNKQCRLYSLGLGSDDNQFEISMANSGCEVHRFDPSIKSAHIQEGQHLWYHRLSVDWRDPNPAIATHKLHSNTKKLGTILNEFGHQKIDVLKADVESAEWKILENLILEDVVEQIGQLVFEVHIHWPGFEVSGNDSTVVRYWYSLLRELELKDFRLFHTYKDLLKPQMLLKKEAFNASSCYRLSWVNTRWK", "length": 347 }, "evidence": [ { "id": "A0A8C2QGJ7", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B869-1", "protein_name": "Methyltransferase like 24", "gene_name": "METTL24", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARERLPGRGCCALRRCLLAAALLLGLRLCAELQRAGPQPPALSPPPGQAPRPPGSHLQPAPGQLRGASRRQVTYVRSGRRAPAGGSRSGTPEPGCCALRGRPRLKGPRWQIDLQPWAGPARSLDEEALRFLRYISTIQIECDHMSTDSLATDSSPTKKPWPVCLDDRFGLVHQIRNKQCRLYSLGLGSDDTHFEVGMASNGCEVHRFDPSVKSAHVLESERLWFHRLSIDWRDPHPAVAAQKPYGNTRKLGAILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSDSSVVRFWYSLLKELELQDFRLFHSYKDLSKPQLFLKKDIFNASSCYTLGWVNTRWK", "length": 366 }, "evidence": [ { "id": "A0A8C2QGJ7", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5BK01-1", "protein_name": "Probable methyltransferase-like protein 24", "gene_name": "Mettl24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTAKPPGRGCGALPRWLLGAALLLGLRLCMELRHAGSGPPGRRDLRGPPRTHLLPAPGPLRGTRRRQVTYVRSGRRALPRGGVSTTPPEPSCCAQLGLPSRKGPRWHIELQPWAGPSRSLDEEASRFLNYIGTTQIACDRMGTNSVATDSGPALKPWLVCLDDRFGLAHQIRTKQCRLYSLGLGSDDTHFEVSMANGGCEVHRFDPSVRSAHVLQSQRLWHHRLSIDWRDPHPAVAAQKPYSNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSESSVVRFWYSLLKELERKDFRLFHTYKDLSKPQLFLKKDIFNASSCYTLSWVNTRWR", "length": 363 }, "evidence": [ { "id": "A0A8C2QGJ7", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JXM2-1", "protein_name": "Probable methyltransferase-like protein 24", "gene_name": "METTL24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARERPPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGSAQSLDEEAWRFLRYISTTQIACNHMNTDSLATDSSPTHKPWSVCLDDRFNLAHQIRNKQCRLYSLGLGSDDTHFEVSMANNGCEVHRFDPSVKSAHILESQHLWYHRLSIDWRDPHPAVAAQKPHSNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSDSSVVRFWYSLLKELEQKDFRLFHSYKDLSKPQLFLKKDIFNASSCYTLSWVNTRWK", "length": 366 }, "evidence": [ { "id": "A0A8C2QGJ7", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CCB5-1", "protein_name": "Probable methyltransferase-like protein 24", "gene_name": "Mettl24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATVKPPGRGCGALPRWLLGAALLLGLRLCMELRHAGSGPPGRGDSPGPPRTHLLSAPGSPRGARRRQVTYVRSGRRVLPRGGGSTTSPEPSCCAQGGLLRRKGSRWHIELQPWAGPSRSLDEEASRFLSYISTTQIACDHMGTDSLATDSSPAPKPWLVCLDDRFGLAHQIRSKRCRLYSLGLGSDDTHFEVSMANGGCEVHRFDPSVKSAHVLERQGLWHHRLSIDWRDPHPAVAAQKPHGNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLVFEIHLHWPGFEVSGSESGVVRFWYSLLKELERKHFRLFHTYKDLTKPQLFLKKDLFNASSCYTLSWVNTKWR", "length": 363 }, "evidence": [ { "id": "A0A8C2QGJ7", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QGJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ7" }, { "id": "PF13383", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13383" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase", "eco_id": "ECO_0000259", "start_pos": 169, "end_pos": 295, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 347, "end_pos": 349 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QGJ8-1", "uniprot_ac": "A0A8C2QGJ8", "uniprot_id": "A0A8C2QGJ8_CRIGR", "mass": { "chemical_mass": 49476.0, "monoisotopic_mass": 49476.0 }, "refseq": { "ac": "XP_003511377", "name": "keratin, type I cytoskeletal 15 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511377" }, "gene_names": [ { "name": "Krt15", "type": "recommended", "evidence": [ { "id": "A0A8C2QGJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8" } ] }, { "name": "Krt15", "type": "synonym", "evidence": [ { "id": "XP_003511377", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511377" } ] } ], "protein_names": [ { "name": "Keratin, type I cytoskeletal 15 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QGJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8/entry#names_and_taxonomy" } ] }, { "name": "keratin, type I cytoskeletal 15 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003511377", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511377" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615080.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511377", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511377" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Krt15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8", "locus": {} } ], "crossref": [ { "id": "100759259", "url": "https://www.ncbi.nlm.nih.gov/gene/100759259", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759259", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759259", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EARYCAQ", "url": "https://omabrowser.org/oma/group/EARYCAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QGJ8", "url": "https://www.orthodb.org/?gene=A0A8C2QGJ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239:SF164", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239:SF164", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511377", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511377", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2J1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H365", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H365", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H365-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H365-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATTFLQTSSTFGGGSTRGGSLRAGGGGFGGGSLYGGGGSRSISASSARFVSSGAGGGYGGGMSCGFGGGAGSGFGGAFGGGFGGGFGDFGGGDGGLLSGNEKITMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPERDYSHYFKTMEEIRDKILAATIDNSRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLARTDLEMQIEHLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYEAIAEKNRRDAEAWFFSKTEELNKEVASNTEMIQSSKTEITDLRRTMQGLEIELQSQLSMKAGLENSLAEVECRYATQLQQIQGLISSLESQLSELRCEMEAQNQEYNMLLDIKTRLEQEIATYRNLLEGQDAKMAGIGVREASLGGGSGGGSSSSNFHISVEESVDGKVVSSRKREI", "length": 457, "header": "tr|A0A8C2QGJ8-1|A0A8C2QGJ8_CRIGR Isoform 1 of Keratin, type I cytoskeletal 15 isoform X1 OS=Cricetulus griseus OX=10029 GN=Krt15 PE=3 SV=1 CANONICAL=A0A8C2QGJ8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QGJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8/entry", "sequence": { "sequence": "MATTFLQTSSTFGGGSTRGGSLRAGGGGFGGGSLYGGGGSRSISASSARFVSSGAGGGYGGGMSCGFGGGAGSGFGGAFGGGFGGGFGDFGGGDGGLLSGNEKITMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPERDYSHYFKTMEEIRDKILAATIDNSRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLARTDLEMQIEHLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYEAIAEKNRRDAEAWFFSKTEELNKEVASNTEMIQSSKTEITDLRRTMQGLEIELQSQLSMKAGLENSLAEVECRYATQLQQIQGLISSLESQLSELRCEMEAQNQEYNMLLDIKTRLEQEIATYRNLLEGQDAKMAGIGVREASLGGGSGGGSSSSNFHISVEESVDGKVVSSRKREI", "length": 457, "header": "tr|A0A8C2QGJ8-1|A0A8C2QGJ8_CRIGR Isoform 1 of Keratin, type I cytoskeletal 15 isoform X1 OS=Cricetulus griseus OX=10029 GN=Krt15 PE=3 SV=1 CANONICAL=A0A8C2QGJ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2J1/entry", "sequence": { "sequence": "MATTFLQTSSTFGGGSTRGGSLRAGGGGFGGGSLYGGGGSRSISASSARFVSSGAGGGYGGGMSCGFGGGAGSGFGGAFGGGFGGGFGDFGGGDGGLLSGNEKITMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPERDYSHYFKTMEEIRDKILAATIDNSRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLARTDLEMQIEHLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYEAIAEKNRRDAEAWFFSKTEELNKEVASNTEMIQSSKTEITDLRRTMQGLEIELQSQLSMKAGLENSLAEVECRYATQLQQIQGLISSLESQLSELRCEMEAQNQEYNMLLDIKTRLEQEIATYRNLLEGQDAKMAGIGVREGGSGGGSSSSNFHISVEESVDGKVVSSRKREI", "length": 453, "header": "tr|A0A9J7H2J1-1|A0A9J7H2J1_CRIGR Computationally mapped isoform of Keratin, type I cytoskeletal 15 isoform X3 OS=Cricetulus griseus OX=10029 GN=Krt15 PE=3 SV=1 CANONICAL=A0A8C2QGJ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H365-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H365/entry", "sequence": { "sequence": "MATTFLQTSSTFGGGSTRGGSLRAGGGGFGGGSLYGGGGSRSISASSARFVSSGAGGGYGGGMSCGFGGGAGSGFGGAFGGGFGGGFGDFGGGDGGLLSGNEKITMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPERDYSHYFKTMEEIRDKILAATIDNSRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLARTDLEMQIEHLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYEAIAEKNRRDAEAWFFSKTEELNKEVASNTEMIQSSKTEITDLRRTMQGLEIELQSQLSMKAGLENSLAEVECRYATQLQQIQGLISSLESQLSELRCEMEAQNQEYNMLLDIKTRLEQEIATYRNLLEGQDAKMAGIGVREGKRGGGGSSSSNFHISVEESVDGKVVSSRKREI", "length": 454, "header": "tr|A0A9J7H365-1|A0A9J7H365_CRIGR Computationally mapped isoform of Keratin, type I cytoskeletal 15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Krt15 PE=3 SV=1 CANONICAL=A0A8C2QGJ8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759259", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759259", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A5G2RFR0-1", "protein_name": "Keratin 15", "gene_name": "KRT15", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSTTFLQTSSSTFGGGSTRGGSLLAGVGGFGGGSLYGGGGSRSISVSSSRFVSSGSGGGFGGGAGSGLGGGFGGGLGGGLGGGFGGGFAGSFGGGFGDFGGGNGGLLAGNEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQSPSSPERDYSPYFKTMEELRDKIRAAAIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLTKTDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAIAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTVQGLEIELQSQLSMKAGLESSLAETECRYATQLQQIQGLIGGLETQLSELRSEMECQNQEYKMLWTSRRGWSRRSPPTAACWRARTPGWPALAPEKPPWEVAAAKSASTSRSQWMGRWFLPEREKSKGSAQERCPPPSPGRVDAWPEGPEELMPGPAFGGSSSRGPSSPSWALCLLSPITPSSFLISFGAGR", "length": 526 }, "evidence": [ { "id": "A0A8C2QGJ8", "url": "https://omabrowser.org/oma/group/A0A8C2QGJ8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "B0UYS0-1", "protein_name": "Keratin, type I cytoskeletal 15", "gene_name": "krt15", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": 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"protein_names": [ { "name": "Serine/arginine-rich splicing factor 11 isoform X8", "type": "synonym", "evidence": [ { "id": "A0A8C2QGJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ9/entry#names_and_taxonomy" } ] }, { "name": "serine/arginine-rich splicing factor 11 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_027251010", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251010" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251010", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251010" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QGJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Srsf11", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ9", "locus": {} } ], "crossref": [ { "id": "cd12518", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12518", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750677", "url": "https://www.ncbi.nlm.nih.gov/gene/100750677", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034447", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034447", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR32343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32343:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32343:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251010", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251010", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QGJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSPPAPGAVGPTSSSVALTSLALRRNFFREAARAMSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 511, "header": "tr|A0A8C2QGJ9-1|A0A8C2QGJ9_CRIGR Isoform 1 of Serine/arginine-rich splicing factor 11 isoform X8 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A8C2QGJ9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QGJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QGJ9/entry", "sequence": { "sequence": "MSSPPAPGAVGPTSSSVALTSLALRRNFFREAARAMSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 511, "header": "tr|A0A8C2QGJ9-1|A0A8C2QGJ9_CRIGR Isoform 1 of Serine/arginine-rich splicing factor 11 isoform X8 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A8C2QGJ9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 13, "start_aa": "Thr", "end_pos": 13, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr13", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613677.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003498091", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498091" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Haus2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40", "locus": {} } ], "crossref": [ { "id": "100757195", "url": "https://www.ncbi.nlm.nih.gov/gene/100757195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028346", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028346", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757195", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757195", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AKMDMLV", "url": "https://omabrowser.org/oma/group/AKMDMLV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QI40", "url": "https://www.orthodb.org/?gene=A0A8C2QI40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16039:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16039:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003498091", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498091", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QI40-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPNPWDPASAPSAAGLLLNHWVASGIVTEEMLDISKKTAPCFVNFSRLQQISDIQAEINQNNLEIELLKLEKDTADLIHPSCLVKKCDSLQIMNNHLEMVLKEKRAIRQRLLRPMCQENLPIEAVYHRYMVHLLELAVTFIEKLETNLETIRNIPHLDTNLKKMSKALAKMDILVNKTEELAENILKWREQQKEISLCIPKVLTEENYLLKFDIVPPLPFVSKVHAQTINAK", "length": 234, "header": "tr|A0A8C2QI40-1|A0A8C2QI40_CRIGR Isoform 1 of HAUS augmin-like complex subunit 2 OS=Cricetulus griseus OX=10029 GN=Haus2 PE=4 SV=1 CANONICAL=A0A8C2QI40-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QI40-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40/entry", "sequence": { "sequence": "MAAPNPWDPASAPSAAGLLLNHWVASGIVTEEMLDISKKTAPCFVNFSRLQQISDIQAEINQNNLEIELLKLEKDTADLIHPSCLVKKCDSLQIMNNHLEMVLKEKRAIRQRLLRPMCQENLPIEAVYHRYMVHLLELAVTFIEKLETNLETIRNIPHLDTNLKKMSKALAKMDILVNKTEELAENILKWREQQKEISLCIPKVLTEENYLLKFDIVPPLPFVSKVHAQTINAK", "length": 234, "header": "tr|A0A8C2QI40-1|A0A8C2QI40_CRIGR Isoform 1 of HAUS augmin-like complex subunit 2 OS=Cricetulus griseus OX=10029 GN=Haus2 PE=4 SV=1 CANONICAL=A0A8C2QI40-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757195", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757195", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1Q580-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "haus2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNSWDPITYTVTPAAKILARCVAAGTMTQQELDAVPQDSEIFSSSLLEAEQLNRIRQDLDQANLDLELLNLERDCADVAHNHYLSQRFASLQQFTSHLQEVLREQTVLRERLTKPLCQQNLPIQADLHRYVVELMRMVVEFVQNLDVKIEMVRAIPTTDHHLTNLSKARTQLLAHVTEVENLYKQVLKRRGQPQTNIKDMSS", "length": 202 }, "evidence": [ { "id": "A0A8C2QI40", "url": "https://omabrowser.org/oma/group/A0A8C2QI40/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CQS9-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "Haus2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAANPWDPASSQTAAGLLLNHLVASGIVTKEMLDVSKKMAPCFVNFSRLQQISDIQAEIYQNNLELELLKLEKDTADLIHPSHLIEKCDVLQSMNNHLEAVLKEKHAIRQRLLRPMCQENLPLEAVYHRYVVHMLDLAVTFIEKFETHLETVKNSPHLDANLKQMSKALAKMDILVNKTEELAENILKWRELQTEISLYIPKMLTEERHLHELDIVPPLPFFPKAHTETSRAK", "length": 234 }, "evidence": [ { "id": "A0A8C2QI40", "url": "https://omabrowser.org/oma/group/A0A8C2QI40/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAANPWDPASAPNGAGLVLGHFIASGMVNQEMLNMSKKTVSCFVNFTRLQQITNIQAEIYQKNLEIELLKLEKDTADVVHPFFLAQKCHTLQSMNNHLEAVLKEKRSLRQRLLKPMCQENLPIEAVYHRYMVHLLELAVTFIERLETHLETIRNIPHLAANLKKMNQALAKMDILVTETEELAENILKWRKQQNEVSSCIPKILAEESYLYKHDIIMPPLPFTSKVHVQTINAK", "length": 235 }, "evidence": [ { "id": "A0A8C2QI40", "url": "https://omabrowser.org/oma/group/A0A8C2QI40/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "pmid": "" }, { "name": "HAUS complex", "id": "GO:0070652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070652", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "pmid": "" }, { "name": "mitotic spindle microtubule", "id": "GO:1990498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990498", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "microtubule nucleation", "id": "GO:0007020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "pmid": "" }, { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "pmid": "" }, { "name": "spindle assembly", "id": "GO:0051225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051225", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI40", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 46, "end_pos": 48 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"uniprot_canonical_ac": "A0A8C2QI68-1", "uniprot_ac": "A0A8C2QI68", "uniprot_id": "A0A8C2QI68_CRIGR", "mass": { "chemical_mass": 78422.0, "monoisotopic_mass": 78422.0 }, "refseq": { "ac": "XP_027262724", "name": "NHL repeat-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262724" }, "gene_names": [ { "name": "Nhlrc2", "type": "recommended", "evidence": [ { "id": "A0A8C2QI68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI68" } ] }, { "name": "Nhlrc2", "type": "synonym", "evidence": [ { "id": "XP_027262724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262724" } ] } ], "protein_names": [ { "name": "NHL repeat-containing protein 2", "type": "recommended", "evidence": [ { "id": "A0A8C2QI68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI68/entry#names_and_taxonomy" } ] }, { "name": "NHL repeat-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027262724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262724" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262724", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262724" } ] }, { "annotation": "Required for normal embryonic development.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI68", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI68#function" }, { "database": "UniProtKB", "id": "ARBA00057428", "url": "https://www.uniprot.org/uniprotkb/ARBA00057428#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI68", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI68" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nhlrc2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI68", "locus": {} } ], "crossref": [ { "id": "cd03012", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03012", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14951", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14951", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751107", "url": "https://www.ncbi.nlm.nih.gov/gene/100751107", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001258", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001258", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011042", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011042", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751107", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751107", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QI68", "url": "https://www.orthodb.org/?gene=A0A8C2QI68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46388:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46388:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01436", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01436", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13905", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13905", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027262724", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262724", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QI68", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QI68-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288980", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288980" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIG0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Magix", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0", "locus": {} } ], "crossref": [ { "id": "cd06735", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06735", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759147", "url": "https://www.ncbi.nlm.nih.gov/gene/100759147", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759147", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759147", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VEHQPQH", "url": "https://omabrowser.org/oma/group/VEHQPQH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QIG0", "url": "https://www.orthodb.org/?gene=A0A8C2QIG0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47646", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47646", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47646:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47646:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288980", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288980", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QIG0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QIG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESRAGNTADPRGSRGGGGLPGSGGPRARQLLERLDARPLAARAAADFSELVRKASATLRLRHKEAVSILDSADIEVTDSRLPHTTLVEHRSQHRRSETLGTYMEPPPVTQHKASYTLKLPQATRQFSVELVRGPAGFGFTLKGGRGVSGDVPLAVRGLLKDGPAHRCGRLQAGDLVLHINGESTQGLTHAQVVERIRAGGPRLCLVLRRPQERDASKTEEVGGHQKRDCSPDPRGSRMTRSRSTISPVHQTLKSRTCLEPSPEAVAAGHVVPIVEHPAEDLKDHIPGAPGTPGPWLVPSEDRLSQALGVRGGGGGAQIAQEMAAGKQRH", "length": 330, "header": "tr|A0A8C2QIG0-1|A0A8C2QIG0_CRIGR Isoform 1 of PDZ domain-containing protein MAGIX OS=Cricetulus griseus OX=10029 GN=Magix PE=4 SV=1 CANONICAL=A0A8C2QIG0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QIG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0/entry", "sequence": { "sequence": "MESRAGNTADPRGSRGGGGLPGSGGPRARQLLERLDARPLAARAAADFSELVRKASATLRLRHKEAVSILDSADIEVTDSRLPHTTLVEHRSQHRRSETLGTYMEPPPVTQHKASYTLKLPQATRQFSVELVRGPAGFGFTLKGGRGVSGDVPLAVRGLLKDGPAHRCGRLQAGDLVLHINGESTQGLTHAQVVERIRAGGPRLCLVLRRPQERDASKTEEVGGHQKRDCSPDPRGSRMTRSRSTISPVHQTLKSRTCLEPSPEAVAAGHVVPIVEHPAEDLKDHIPGAPGTPGPWLVPSEDRLSQALGVRGGGGGAQIAQEMAAGKQRH", "length": 330, "header": "tr|A0A8C2QIG0-1|A0A8C2QIG0_CRIGR Isoform 1 of PDZ domain-containing protein MAGIX OS=Cricetulus griseus OX=10029 GN=Magix PE=4 SV=1 CANONICAL=A0A8C2QIG0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 292, "start_aa": "Thr", "end_pos": 292, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr292", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIG0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIG0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759147", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759147", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A5G2QNI2-1", "protein_name": "MAGI family member, X-linked", "gene_name": "MAGIX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEPRAGGATDPRGSGGGGGLPPRAGPSARERLARLDARPLAARAAADVAALVRRAGATLRLRPKEAISVLDSADIEVTDSRLPNATFMAHRPQPGDLVLHINGESTQGLTHAQVVERIRASGPRLCLVLSRPPKTHPGKPEGVGGSRKEDDLSPDPGRPEVMRSRSASTSPLQHPRPRTTPQTRGSAELSPAGAADGPADPPLERCTEDPEDQTPDSPGPWLVPSEERLSRALGVPGAAQFALEMAAGRRRH", "length": 252 }, "evidence": [ { "id": "A0A8C2QIG0", "url": "https://omabrowser.org/oma/group/A0A8C2QIG0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q4KL35-1", "protein_name": "PDZ domain-containing protein MAGIX", "gene_name": "Magix", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSRAGNTADPRGGRRGGGLQGSRSPRARQLLERLDARPLAARAAADLTALVRKAGATLRLRHTEGVSGLDSADIEVTDSRLPHATLVKHRPQHQRSETLGTWTEPLPVTQNKASYALKVPQATGRFSVELTRGPAGFGLTLSGGRNVSGDAPLTVHGLLKDGPAQRCGRLQAGDLVLYINGQSTQGLTHAQVVERIRTGGPHLCLVLQRPQDMDGSRIKEVGGHRKTDRSLDPRGSRVESRSTISPVHHRPKTRTSPRPSPEAVAIGHVVRAVEHPTEDLENRIPGTPGPWLVPSEDRLSRALGVRGGGAQLALEMAAGRRRH", "length": 324 }, "evidence": [ { "id": "A0A8C2QIG0", "url": "https://omabrowser.org/oma/group/A0A8C2QIG0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AYQ0-1", "protein_name": "PDZ domain-containing protein MAGIX", "gene_name": "Magix", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSHAGNTADPRGSRRGVGLQGSGSPRARQLLERLDARPLAARAAADLSALVRKAGATLRLRHKEAISGLDSADIEVADSRLPHATLVEHRPQHQRSDTQGPRMEPLPVIQNKASYASRLPQATGRFSVELVRGPAGFGLTLSGGRNVSGNVPLAVCGLLKDGPAQRCGHLQAGDLVLYINGQSTRGLTHAQAVEWIRTGGPRLCLVLQRPQEMNGSRSKEVGGGHQKTDRIPDPRGGRMMESRGTISPVHHRPKTRTGPGPSPESVATGHVVRAAEHPAEDLEDRIPGSPGPWLVPSEDRLSRALGIRGGGVQLAQEMAAGRRRH", "length": 326 }, "evidence": [ { "id": "A0A8C2QIG0", "url": "https://omabrowser.org/oma/group/A0A8C2QIG0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H6Y5-1", "protein_name": "PDZ domain-containing protein MAGIX", "gene_name": "MAGIX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPRTGDAADPRGSRGGRGPSPLAGPSARQLLARLDARPLAARAAVDVAALVRRAGATLRLRRKEAVSVLDSADIEVTDSRLPHATIVDHRPQHRWLETCNAPPQLIQGKARSAPKPSQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLETHPGKPRGVGEPRKGVVPSWPDRSPDPGGPEVTGSRSSSTSLVQHPPSRTTLKKTRGSPEPSPEAAADGPTVSPPERRAEDPNDQIPGSPGPWLVPSEERLSRALGVRGAAQLAQEMAAGRRRH", "length": 334 }, "evidence": [ { "id": "A0A8C2QIG0", "url": "https://omabrowser.org/oma/group/A0A8C2QIG0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QIG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG0" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 128, "end_pos": 212, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 292 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QIH9-1", "uniprot_ac": "A0A8C2QIH9", "uniprot_id": "A0A8C2QIH9_CRIGR", "mass": { "chemical_mass": 119801.0, "monoisotopic_mass": 119801.0 }, "refseq": { "ac": "XP_003500240", "name": "constitutive coactivator of PPAR-gamma-like protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500240" }, "gene_names": [ { "name": "Fam120c", "type": "recommended", "evidence": [ { "id": "A0A8C2QIH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9" } ] }, { "name": "Fam120c", "type": "synonym", "evidence": [ { "id": "XP_003500240", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500240" } ] } ], "protein_names": [ { "name": "Constitutive coactivator of PPAR-gamma-like protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QIH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9/entry#names_and_taxonomy" } ] }, { "name": "constitutive coactivator of PPAR-gamma-like protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003500240", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500240" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 511 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613780.1) and transcript sequence (IACG01045762.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003500240.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500240", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500240" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam120c", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9", "locus": {} } ], "crossref": [ { "id": "100756331", "url": "https://www.ncbi.nlm.nih.gov/gene/100756331", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026784", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026784", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756331", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756331", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QIH9", "url": "https://www.orthodb.org/?gene=A0A8C2QIH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15976", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15976", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15976:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15976:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27242", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27242", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500240", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8F3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H992", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H992-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H992-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0L1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K231", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K231", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K231-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K231-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPIPRNQMGPISTGKPMFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFTEDPMLQDSSFTNWAVSYDSSTSQFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQQGSSDGISKSIELNQSRARSQVNGNNSTLIVEEKSDHLPAPTQCALSRDSTVCNNDDHCLPVKNAEKSLVQEQELETVAQQKEE", "length": 1090, "header": "tr|A0A8C2QIH9-1|A0A8C2QIH9_CRIGR Isoform 1 of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QIH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPIPRNQMGPISTGKPMFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFTEDPMLQDSSFTNWAVSYDSSTSQFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQQGSSDGISKSIELNQSRARSQVNGNNSTLIVEEKSDHLPAPTQCALSRDSTVCNNDDHCLPVKNAEKSLVQEQELETVAQQKEE", "length": 1090, "header": "tr|A0A8C2QIH9-1|A0A8C2QIH9_CRIGR Isoform 1 of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIH4/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPIPRNQMGPISTGKPMFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFTEDPMLQDSSFTNWAVSYDSSTSQFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKVSIQSHPKEENWKLLGWWWASGPAADLLEVEDPLACKWFQSVGQERGMEKNRLVEDPKVTKKEINNKALQMGFLNPSSSIKVGPAHR", "length": 890, "header": "tr|A0A9J7GIH4-1|A0A9J7GIH4_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X9 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIR7/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPIPRNQMGPISTGKPMFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFTEDPMLQDSSFTNWAVSYDSSTSQFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRNSREDRDSFSQLLFLGCYFTLEREGCHLSSIPSLRPDTWFSGLVAESCIAMNLTPSLHRLCLPSFMNQISFKNSRLRNWMLEGFSLLPYS", "length": 855, "header": "tr|A0A9J7GIR7-1|A0A9J7GIR7_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJX1/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQQGSSDGISKSIELNQSRARSQVNGNNSTLIVEEKSDHLPAPTQCALSRDSTVCNNDDHCLPVKNAEKSLVQEQELETVAQQKEE", "length": 972, "header": "tr|A0A9J7GJX1-1|A0A9J7GJX1_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8F3/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVK", "length": 228, "header": "tr|A0A9J7H8F3-1|A0A9J7H8F3_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H992-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H992/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPIPRNQMGPISTGKPMFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFTEDPMLQDSSFTNWAVSYDSSTSQFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRNSREDRDSFSQLLFLGCYFTLEREGCHLSSIPSLRPAITPRALKRYAHRKT", "length": 816, "header": "tr|A0A9J7H992-1|A0A9J7H992_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0L1/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFTEDPMLQDSSFTNWAVSYDSSTSQFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQQGSSDGISKSIELNQSRARSQVNGNNSTLIVEEKSDHLPAPTQCALSRDSTVCNNDDHCLPVKNAEKSLVQEQELETVAQQKEE", "length": 1031, "header": "tr|A0A9J7K0L1-1|A0A9J7K0L1_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K231-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K231/entry", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSAIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPIPRNQMGPISTGKPMFPNCLTSKTSPPLVPESSHSSSSDADEANGASSEQATEAVQQQPGWEEPSGDRGSWVQPVDAGVSETSMGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQQGSSDGISKSIELNQSRARSQVNGNNSTLIVEEKSDHLPAPTQCALSRDSTVCNNDDHCLPVKNAEKSLVQEQELETVAQQKEE", "length": 1031, "header": "tr|A0A9J7K231-1|A0A9J7K231_CRIGR Computationally mapped isoform of Constitutive coactivator of PPAR-gamma-like protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam120c PE=3 SV=1 CANONICAL=A0A8C2QIH9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756331", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756331", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIH9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1020, "end_pos": 1022, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1031, "end_pos": 1033, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1032, "end_pos": 1034, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1020, "end_pos": 1022 }, { "start_pos": 1031, "end_pos": 1033 }, { "start_pos": 1032, "end_pos": 1034 }, { "start_pos": 281, "end_pos": 283 }, { "start_pos": 460, "end_pos": 462 } ] }, "class_list": [], 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297722" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIL7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIL7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834827", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIL7", "locus": {} } ], "crossref": [ { "id": "113834827", "url": "https://www.ncbi.nlm.nih.gov/gene/113834827", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113834827", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834827", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QIL7", "url": "https://www.orthodb.org/?gene=A0A8C2QIL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297722", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QIL7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QIL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPPPPRQPPPQARAARGSLRLQRAFLRGPLGVLRLLQLLAGAAFWITIATSKYQGPVHFALFVSVLFWLLTLGLYFITLLGKQELVPVLGSRWLVVNVAHDLLAAALYGAATGIMIDQTQRHSYCNLKSYRLPCAYHAFLAASVCGGLCLGLYLLSALYGCCRRYQGKEEVV", "length": 173, "header": "tr|A0A8C2QIL7-1|A0A8C2QIL7_CRIGR Isoform 1 of MARVEL domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=LOC113834827 PE=4 SV=1 CANONICAL=A0A8C2QIL7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QIL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIL7/entry", "sequence": { "sequence": "MLPPPPRQPPPQARAARGSLRLQRAFLRGPLGVLRLLQLLAGAAFWITIATSKYQGPVHFALFVSVLFWLLTLGLYFITLLGKQELVPVLGSRWLVVNVAHDLLAAALYGAATGIMIDQTQRHSYCNLKSYRLPCAYHAFLAASVCGGLCLGLYLLSALYGCCRRYQGKEEVV", "length": 173, "header": "tr|A0A8C2QIL7-1|A0A8C2QIL7_CRIGR Isoform 1 of MARVEL domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=LOC113834827 PE=4 SV=1 CANONICAL=A0A8C2QIL7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289435", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289435" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIM4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIM4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rtl9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIM4", "locus": {} } ], "crossref": [ { "id": "100759351", "url": "https://www.ncbi.nlm.nih.gov/gene/100759351", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR042919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042919", "database": "InterPro", "categories": [ "Protein Classification" ] 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287323", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287323" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QIR8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIR8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nipal2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIR8", "locus": {} } ], "crossref": [ { "id": "100755274", "url": "https://www.ncbi.nlm.nih.gov/gene/100755274", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755274", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755274", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QIR8", "url": "https://www.orthodb.org/?gene=A0A8C2QIR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12570", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12570", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12570:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12570:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287323", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287323", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QIR8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QIR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIR8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPVPAGPEDDPSAVLDELSRNFTYWEPGPGNGSLSSAWYRRNQVHLFGVLLAILGNLVISISLNIQKYSHLHLAQKDLPKPYFKSVLWWSGTLLMAVGEMGNFAAYGVAPITLIAPLGCMSVTGSAIISVMFLKENLRASDLLGMTVAFAGTYLLVNFAPNVSQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKSIVILLTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYVMLVIMIASCVFQVKFLNQATKLYTMTTVVPVNHAFFTTSAIIAGIIFYQEFLGAAFLAVFIYLFGCFLSFLGVFLVTRNRENGHLQQSFIDFGNIPGKQMLDKIQPDSNGLSYGTLPDGSDSTRSQSGEKKEA", "length": 383, "header": "tr|A0A8C2QIR8-1|A0A8C2QIR8_CRIGR Isoform 1 of NIPA-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nipal2 PE=3 SV=1 CANONICAL=A0A8C2QIR8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QIR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIR8/entry", "sequence": { "sequence": "MAAPVPAGPEDDPSAVLDELSRNFTYWEPGPGNGSLSSAWYRRNQVHLFGVLLAILGNLVISISLNIQKYSHLHLAQKDLPKPYFKSVLWWSGTLLMAVGEMGNFAAYGVAPITLIAPLGCMSVTGSAIISVMFLKENLRASDLLGMTVAFAGTYLLVNFAPNVSQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKSIVILLTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYVMLVIMIASCVFQVKFLNQATKLYTMTTVVPVNHAFFTTSAIIAGIIFYQEFLGAAFLAVFIYLFGCFLSFLGVFLVTRNRENGHLQQSFIDFGNIPGKQMLDKIQPDSNGLSYGTLPDGSDSTRSQSGEKKEA", "length": 383, "header": "tr|A0A8C2QIR8-1|A0A8C2QIR8_CRIGR Isoform 1 of NIPA-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nipal2 PE=3 SV=1 CANONICAL=A0A8C2QIR8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD71/entry", "sequence": { "sequence": "MAAPVPAGPEDDPSAVLDELSRNFTYWEPGPGNGSLSSAWYRRNQVHLFGVLLAILGNLVISISLNIQKYSHLHLAQKDLPKPYFKSVLWWSGTLLMAVGEMGNFAAYGVAPITLIAPLGCMSVTGSAIISVMFLKENLRASDLLGMTVAFAGTYLLVNFAPNVSQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKSIVILLTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYVMLVIMIASCVFQVKFLNQATKLYTMTTVVPVNHAFFTTSAIIAGIIFYQEFLGAAFLAVFIYLFGETNVGQNTTRFKWLILWNLA", "length": 335, "header": "tr|A0A9J7KD71-1|A0A9J7KD71_CRIGR Computationally mapped isoform of NIPA-like protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nipal2 PE=3 SV=1 CANONICAL=A0A8C2QIR8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613624.1) and transcript sequence (IACG01204376.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007648977.1. 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This record is derived from a genomic sequence (NW_003616323.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514112", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514112" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJC6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem141", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJC6", "locus": {} } ], "crossref": [ { "id": "100760946", "url": "https://www.ncbi.nlm.nih.gov/gene/100760946", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026788", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026788", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760946", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760946", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQSNAFM", "url": "https://omabrowser.org/oma/group/CQSNAFM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QJC6", "url": "https://www.orthodb.org/?gene=A0A8C2QJC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47229", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47229", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47229:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47229:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15110", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15110", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514112", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514112", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QJC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNLGLSRVDDAVAAKHPGLEEYAVCQSNAFMKGVFTFVTGTGATFGLQLFIKRKFPYPVQWNFLVSAVVGSVASYKVTRMESQKCRDLWLFLETGKLPKDMSTDHQD", "length": 108, "header": "tr|A0A8C2QJC6-1|A0A8C2QJC6_CRIGR Isoform 1 of Transmembrane protein 141 OS=Cricetulus griseus OX=10029 GN=Tmem141 PE=4 SV=1 CANONICAL=A0A8C2QJC6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QJC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJC6/entry", "sequence": { "sequence": "MVNLGLSRVDDAVAAKHPGLEEYAVCQSNAFMKGVFTFVTGTGATFGLQLFIKRKFPYPVQWNFLVSAVVGSVASYKVTRMESQKCRDLWLFLETGKLPKDMSTDHQD", "length": 108, "header": "tr|A0A8C2QJC6-1|A0A8C2QJC6_CRIGR Isoform 1 of Transmembrane protein 141 OS=Cricetulus griseus OX=10029 GN=Tmem141 PE=4 SV=1 CANONICAL=A0A8C2QJC6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJC6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJC6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJC6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760946", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760946", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2AJB2-1", "protein_name": "Transmembrane protein 141", "gene_name": "Tmem141", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNLGLSRVDDAVAARHPGLEEFAACQSHAFMKGVFTFVTGTGATFGLLMFIKRKFPYPVQWSFLVSAIAGSVASYRVTSMECQKCSNLWLFLETGQLPKDISTDPHD", "length": 108 }, "evidence": [ { "id": "A0A8C2QJC6", "url": "https://omabrowser.org/oma/group/A0A8C2QJC6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZK53-1", "protein_name": "Transmembrane protein 141", "gene_name": "Tmem141", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNLGLSRVDDAVAAKHPGLEEYAACQSNAFMKGVFTFVTGTGVTFGLQMFIKRKFPYPVQWGFLVSAGKRKGEEGGLSAMSAYTLLARTKPHGASAVRRLRKAALL", "length": 107 }, "evidence": [ { "id": "A0A8C2QJC6", "url": "https://omabrowser.org/oma/group/A0A8C2QJC6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1JIX4-1", "protein_name": "Transmembrane protein 141", "gene_name": "Dmel\\CG42488", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNDIKRLKDQQREKHPGFDGYMDCMTRSLFTGLATFCLSFSGTYFAQKIVQSKIRYPIKYNILISSLVATGVSYQITSTRTKACQAAWMAFEDKHSVLKEKTF", "length": 103 }, "evidence": [ { "id": "A0A8C2QJC6", "url": "https://omabrowser.org/oma/group/A0A8C2QJC6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1RVY3-1", "protein_name": "Transmembrane protein 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"https://www.ncbi.nlm.nih.gov/protein/XP_027280582" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280582" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJE5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Txndc11", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5", "locus": {} } ], "crossref": [ { "id": "cd02981", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02981", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02995", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02995", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03006", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03006", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752982", "url": "https://www.ncbi.nlm.nih.gov/gene/100752982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052792", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052792", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752982", "url": 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"MSECRGRGGGGGSNSSDNPEGEGGGGPKGSGSVSPAGAAASSEGRLRRGLRGASLMARRRPELLCGAVALGCALLFALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDSAELVRRDSEVVLLFFYAPWCGQSIAARAEIEQAASRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIHLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKDYLGTIRFGVITNKHLAKLVSLVHSGSVYLHRHFNTSLVFPREVMNFTAENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGPALFLFIPFDPLAERHPLLDEITEVALEYNNCRGDQVVERLLQHLRRMEAPVFQSLAPELPAPLPDVQLMAASPCCNTVVLPQGPALSRTHNVCELCVNQTVGGTKPSSVSMPQCSFFEMAAALDSFYLKEQTFYHVVSGSIECSNFLTSYSPFSYYTACCRTISRGMASFTGSEQDVFTAPAITFSSLKKSCEATAPSSIPHIEENRYHFPEVGLTSTTFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSSAPVKEFATIVDVKEESHYILDPEQALMKFTLESFIQNFSVLYSPLKRHLTGSNSAQFPSRHLITEVTTDTFWEVTLRKQDVLLLYYTKWCGFCPSLNHIFIQLARLLPEDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLTVKYPGDLPITLPNLLRFILHHSDPASAPQDFDISPPTQECVQNEAVLQREHISHVENTMQKLRSEMSSLRRTQEKVEGRLFSARRDGHRLLRRQRALEQQHRLLRRHSQKLQALYVQKARELQELASASETPLPEHTWLKILLATMERELEGQGGAKESAPLEKAHPNHSKLPGDTPPPSTTSSTLASERKQENRTD", "length": 944, "header": "tr|A0A8C2QJE5-1|A0A8C2QJE5_CRIGR Isoform 1 of Thioredoxin domain-containing protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Txndc11 PE=4 SV=1 CANONICAL=A0A8C2QJE5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QJE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5/entry", "sequence": { "sequence": "MSECRGRGGGGGSNSSDNPEGEGGGGPKGSGSVSPAGAAASSEGRLRRGLRGASLMARRRPELLCGAVALGCALLFALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDSAELVRRDSEVVLLFFYAPWCGQSIAARAEIEQAASRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIHLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKDYLGTIRFGVITNKHLAKLVSLVHSGSVYLHRHFNTSLVFPREVMNFTAENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGPALFLFIPFDPLAERHPLLDEITEVALEYNNCRGDQVVERLLQHLRRMEAPVFQSLAPELPAPLPDVQLMAASPCCNTVVLPQGPALSRTHNVCELCVNQTVGGTKPSSVSMPQCSFFEMAAALDSFYLKEQTFYHVVSGSIECSNFLTSYSPFSYYTACCRTISRGMASFTGSEQDVFTAPAITFSSLKKSCEATAPSSIPHIEENRYHFPEVGLTSTTFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSSAPVKEFATIVDVKEESHYILDPEQALMKFTLESFIQNFSVLYSPLKRHLTGSNSAQFPSRHLITEVTTDTFWEVTLRKQDVLLLYYTKWCGFCPSLNHIFIQLARLLPEDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLTVKYPGDLPITLPNLLRFILHHSDPASAPQDFDISPPTQECVQNEAVLQREHISHVENTMQKLRSEMSSLRRTQEKVEGRLFSARRDGHRLLRRQRALEQQHRLLRRHSQKLQALYVQKARELQELASASETPLPEHTWLKILLATMERELEGQGGAKESAPLEKAHPNHSKLPGDTPPPSTTSSTLASERKQENRTD", "length": 944, "header": "tr|A0A8C2QJE5-1|A0A8C2QJE5_CRIGR Isoform 1 of Thioredoxin domain-containing protein 11 isoform X2 OS=Cricetulus griseus OX=10029 GN=Txndc11 PE=4 SV=1 CANONICAL=A0A8C2QJE5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G9Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9Y6/entry", "sequence": { "sequence": "MQKTEAFLLFSCNTSVSSEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKDYLGTIRFGVITNKHLAKLVSLVHSGSVYLHRHFNTSLVFPREVMNFTAENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGPALFLFIPFDPLAERHPLLDEITEVALEYNNCRGDQVVERLLQHLRRMEAPVFQSLAPELPAPLPDVQLMAASPCCNTVVLPQGPALSRTHNVCELCVNQTVGGTKPSSVSMPQCSFFEMAAALDSFYLKEQTFYHVVSGSIECSNFLTSYSPFSYYTACCRTISRGMASFTGSEQDVFTAPAITFSSLKKSCEATAPSSIPHIEENRYHFPEVGLTSTTFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSSAPVKEFATIVDVKEESHYILDPEQALMKFTLESFIQNFSVLYSPLKRHLTGSNSAQFPSRHLITEVTTDTFWEVTLRKQDVLLLYYTKWCGFCPSLNHIFIQLARLLPEDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLTVKYPGDLPITLPNLLRFILHHSDPASAPQDFDISPPTQECVQNEAVLQREHISHVENTMQKLRSEMSSLRRTQEKVEGRLFSARRDGHRLLRRQRALEQQHRLLRRHSQKLQALYVQKARELQELASASETPLPEHTWLKILLATMERELEGQGGAKESAPLEKAHPNHSKLPGDTPPPSTTSSTLASERKQENRTD", "length": 732, "header": "tr|A0A9J7G9Y6-1|A0A9J7G9Y6_CRIGR Computationally mapped isoform of Thioredoxin domain-containing protein 11 isoform X4 OS=Cricetulus griseus OX=10029 GN=Txndc11 PE=4 SV=1 CANONICAL=A0A8C2QJE5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GAJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAJ3/entry", "sequence": { "sequence": "MSECRGRGGGGGSNSSDNPEGEGGGGPKGSGSVSPAGAAASSEGRLRRGLRGASLMARRRPELLCGAVALGCALLFALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDSAELVRRDSEVVLLFFYAPWCGQSIAARAEIEQAASRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIHLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKDYLGTIRFGVITNKHLAKLVSLVHSGSVYLHRHFNTSLVFPREVMNFTAENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGPALFLFIPFDPLAERHPLLDEITEVALEYNNCRGDQVVERLLQHLRRMEAPVFQSLAPELPAPLPDVQLMAASPCCNTVVLPQGPALSRTHNVCELCVNQTVGGTKPSSVSMPQCSFFEMAAALDSFYLKEQTFYHVVSGSIECSNFLTSYSPFSYYTACCRTISRGMASFTGSEQDVFTAPAITFSSLKKSCEATAPSSIPHIEENRYHFPEVGLTSTTFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSSAPVKEFATIVDVKEESHYILDPEQALMKFTLESFIQNFSVLYSPLKRHLTGSNSAQFPSRHLITEVTTDTFWEVTLRKQDVLLLYYTKWCGFCPSLNHIFIQLARLLPEDTFTVARKDLTVKYPGDLPITLPNLLRFILHHSDPASAPQDFDISPPTQECVQNEAVLQREHISHVENTMQKLRSEMSSLRRTQEKVEGRLFSARRDGHRLLRRQRALEQQHRLLRRHSQKLQALYVQKARELQELASASETPLPEHTWLKILLATMERELEGQGGAKESAPLEKAHPNHSKLPGDTPPPSTTSSTLASERKQENRTD", "length": 917, "header": "tr|A0A9J7GAJ3-1|A0A9J7GAJ3_CRIGR Computationally mapped isoform of Thioredoxin domain-containing protein 11 isoform X3 OS=Cricetulus griseus OX=10029 GN=Txndc11 PE=4 SV=1 CANONICAL=A0A8C2QJE5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K033-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K033/entry", "sequence": { "sequence": "MNFTAENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGPALFLFIPFDPLAERHPLLDEITEVALEYNNCRGDQVVERLLQHLRRMEAPVFQSLAPELPAPLPDVQLMAASPCCNTVVLPQGPALSRTHNVCELCVNQTVGGTKPSSVSMPQCSFFEMAAALDSFYLKEQTFYHVVSGSIECSNFLTSYSPFSYYTACCRTISRGMASFTGSEQDVFTAPAITFSSLKKSCEATAPSSIPHIEENRYHFPEVGLTSTTFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSSAPVKEFATIVDVKEESHYILDPEQALMKFTLESFIQNFSVLYSPLKRHLTGSNSAQFPSRHLITEVTTDTFWEVTLRKQDVLLLYYTKWCGFCPSLNHIFIQLARLLPEDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLTVKYPGDLPITLPNLLRFILHHSDPASAPQDFDISPPTQECVQNEAVLQREHISHVENTMQKLRSEMSSLRRTQEKVEGRLFSARRDGHRLLRRQRALEQQHRLLRRHSQKLQALYVQKARELQELASASETPLPEHTWLKILLATMERELEGQGGAKESAPLEKAHPNHSKLPGDTPPPSTTSSTLASERKQENRTD", "length": 638, "header": "tr|A0A9J7K033-1|A0A9J7K033_CRIGR Computationally mapped isoform of Thioredoxin domain-containing protein 11 isoform X5 OS=Cricetulus griseus OX=10029 GN=Txndc11 PE=4 SV=1 CANONICAL=A0A8C2QJE5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJE5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJE5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752982", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJE5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJE5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 637, "end_pos": 639, "annotation": "n_glycosylation_sequon" }, { "start_pos": 915, "end_pos": 917, "annotation": "n_glycosylation_sequon" }, { "start_pos": 941, "end_pos": 943, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QJE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJE5" }, { "id": "PS51352", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 212, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 }, { "start_pos": 297, "end_pos": 299 }, { "start_pos": 308, "end_pos": 310 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 575, "end_pos": 577 }, { "start_pos": 637, "end_pos": 639 }, { "start_pos": 915, "end_pos": 917 }, { "start_pos": 941, "end_pos": 943 } ] }, "class_list": [], "section_stats": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QJQ2-1", "uniprot_ac": "A0A8C2QJQ2", "uniprot_id": "A0A8C2QJQ2_CRIGR", "mass": { "chemical_mass": 65439.0, "monoisotopic_mass": 65439.0 }, "refseq": { "ac": "XP_035295026", "name": "snake venom 5'-nucleotidase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295026" }, "gene_names": [ { "name": "LOC100753248", "type": "recommended", "evidence": [ { "id": "A0A8C2QJQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJQ2" } ] }, { "name": "LOC100753248", "type": "synonym", "evidence": [ { "id": "XP_035295026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295026" } ] } ], "protein_names": [ { "name": "Ecto-5'-nucleotidase", "type": "recommended", "evidence": [ { "id": "A0A8C2QJQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJQ2/entry#names_and_taxonomy" } ] }, { "name": "snake venom 5'-nucleotidase", "type": "synonym", "evidence": [ { "id": "XP_035295026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295026" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295026" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJQ2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJQ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753248", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJQ2", "locus": {} } ], "crossref": [ { "id": "cd07406", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07406", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753248", "url": "https://www.ncbi.nlm.nih.gov/gene/100753248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753248", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753248", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HTHDGVP", "url": "https://omabrowser.org/oma/group/HTHDGVP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QJQ2", "url": "https://www.orthodb.org/?gene=A0A8C2QJQ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11575", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11575", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11575:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11575:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02872", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02872", "database": "Pfam", 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"MEAFEEEAPTLGPPQPASLDEELFRKTRSGDMDSYDLTILHFNDVYDVDSHTEEPVGGAARFATAVKKFSILNPLLIFSGDCLNPSVLSTVTKGKHMIPILNELGVHFAVFGNHEFDFGVDILEEYMKQMHFTWFLSNVHDRFTSEPLGHGTVKKIVNWNNLKIGLMGLVEEDWLDTLATVNKSNVNYKDYVEAANELAVELREEGADLVIAMTHMKWGNDTRLAQRAEGLDLILGGHDHEYGIRRVNETWIVKSGSDFKNLTKINIRLFDASFQYVFEKVDVVSYLEEDSYIKAIVRDFTQNIQYMLEEVLCPIDMELDGREITVRRCESNLGNLVTNAMLEATHAEVALLNSGTLRSDRIHPPGKFTLHDLVAILPIVDPVLVIRVTGAQLLEALENGVYKYPALDGRFPQVAGIEFGFDPDAEPGHRVIRDTVKVQGQYLWKKKVYLLATKEYIANGKDGYSMLKSCPRMFDTETAQVLSTVVMNHFESIKILQGKKKCVSGHRMSLIMTTNKSPSLTAFEGESDEQSGIIAVPGIEGRICHISPDMKEHLRQLRTARKQGLRTFPSISDNAFETSDSD", "length": 582, "header": "tr|A0A8C2QJQ2-1|A0A8C2QJQ2_CRIGR Isoform 1 of Ecto-5'-nucleotidase OS=Cricetulus griseus OX=10029 GN=LOC100753248 PE=3 SV=1 CANONICAL=A0A8C2QJQ2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QJQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJQ2/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003614143.1) and transcript sequence (JI879547.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003505397.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505397", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505397" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJT3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJT3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cenpp", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJT3", "locus": {} } ], "crossref": [ { "id": "100758284", "url": "https://www.ncbi.nlm.nih.gov/gene/100758284", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027801", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027801", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758284", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758284", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QJT3", "url": "https://www.orthodb.org/?gene=A0A8C2QJT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FUB0", "url": "https://www.orthodb.org/?gene=A0A9J7FUB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28577", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28577", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28577:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28577:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003505397", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505397", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QJT3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPETRELRALEAEVAALQRECSMLSKPWEKTSGARKSFQKFPQSDSEGWKSWRDLKSQLAHLKSEVSFLSKLTGINIRNYSKTEDITNNEVTEKDTKKILQRHRLSGNCSMVTFQLEFQVLEIETKEKSSSVITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWYEYRKNTFKHFKEKYPDSVHLSEGTCSHCMEIHSARQPGFELVIVWRIQIDEEGKVFPKLDLLTKVPERALELDKNRVIETAPLSFRRLLGVLGIEAALDSLIKLLCVEND", "length": 286, "header": "tr|A0A8C2QJT3-1|A0A8C2QJT3_CRIGR Isoform 1 of Centromere protein P isoform X3 OS=Cricetulus griseus OX=10029 GN=Cenpp PE=4 SV=1 CANONICAL=A0A8C2QJT3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QJT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJT3/entry", "sequence": { "sequence": "MDPETRELRALEAEVAALQRECSMLSKPWEKTSGARKSFQKFPQSDSEGWKSWRDLKSQLAHLKSEVSFLSKLTGINIRNYSKTEDITNNEVTEKDTKKILQRHRLSGNCSMVTFQLEFQVLEIETKEKSSSVITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWYEYRKNTFKHFKEKYPDSVHLSEGTCSHCMEIHSARQPGFELVIVWRIQIDEEGKVFPKLDLLTKVPERALELDKNRVIETAPLSFRRLLGVLGIEAALDSLIKLLCVEND", "length": 286, "header": "tr|A0A8C2QJT3-1|A0A8C2QJT3_CRIGR Isoform 1 of Centromere protein P isoform X3 OS=Cricetulus griseus OX=10029 GN=Cenpp PE=4 SV=1 CANONICAL=A0A8C2QJT3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUB0/entry", "sequence": { "sequence": "MDPETRELRALEAEVAALQRECSMLSKPWEKTSGARKSFQKFPQSDSEGWKSWRDLKSQLAHLKSEVSFLSKLTGINIRNYSKTEDITNNEVTEKDTKKILQRHRLSGNCSMVTFQLEFQVLEIETKEKSSSVITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWYEYRKNTFKHFKEKYPDSVHLSEGTCSHCMEIHSARQPGPGAGQEQGHRNCSSEFPKTARSTWN", "length": 239, "header": "tr|A0A9J7FUB0-1|A0A9J7FUB0_CRIGR Computationally mapped isoform of Centromere protein P isoform X4 OS=Cricetulus griseus OX=10029 GN=Cenpp PE=4 SV=1 CANONICAL=A0A8C2QJT3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027274042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274042" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc38a6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9", "locus": {} } ], "crossref": [ { "id": "100752560", "url": "https://www.ncbi.nlm.nih.gov/gene/100752560", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752560", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QJY9", "url": "https://www.orthodb.org/?gene=A0A8C2QJY9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950:SF366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950:SF366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027274042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274042", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0Z4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0Z4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0Z4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQASQDSFQAEPGWYVSAQQPEEEAAAAEEWSPLLSNEPHSQGSPGVSFGLSVFNVMNAIMGSGILGLAYVMANTGILGFSFLLLLVALLASYSVHLLLSMCIQTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLPGDHSGSWYLDGQTLLLIICVGIVFPLSLLPKIGFLGYTSSLSFFFMVFFALVVVIKKWSIPCPVTLKCIDGVFQISNATDDCKPKLFHFSKESIYALPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLLYFVSALFGYLTFYDKVESELLQGYSKYLPHDVVVMAVKLCILFAVLLTVPLIHFPARKALMMILFSNFPFSWIRHSLTTLALNIIIVLLAIYVPDIRNVFGIVGASTSTCLIFVFPGLFYLKLSREDFLSWKKLGALFLLITGTLVGSFSLALIIFDWVNNK", "length": 459, "header": "tr|A0A8C2QJY9-1|A0A8C2QJY9_CRIGR Isoform 1 of Probable sodium-coupled neutral amino acid transporter 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc38a6 PE=3 SV=1 CANONICAL=A0A8C2QJY9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QJY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9/entry", "sequence": { "sequence": "MQASQDSFQAEPGWYVSAQQPEEEAAAAEEWSPLLSNEPHSQGSPGVSFGLSVFNVMNAIMGSGILGLAYVMANTGILGFSFLLLLVALLASYSVHLLLSMCIQTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLPGDHSGSWYLDGQTLLLIICVGIVFPLSLLPKIGFLGYTSSLSFFFMVFFALVVVIKKWSIPCPVTLKCIDGVFQISNATDDCKPKLFHFSKESIYALPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLLYFVSALFGYLTFYDKVESELLQGYSKYLPHDVVVMAVKLCILFAVLLTVPLIHFPARKALMMILFSNFPFSWIRHSLTTLALNIIIVLLAIYVPDIRNVFGIVGASTSTCLIFVFPGLFYLKLSREDFLSWKKLGALFLLITGTLVGSFSLALIIFDWVNNK", "length": 459, "header": "tr|A0A8C2QJY9-1|A0A8C2QJY9_CRIGR Isoform 1 of Probable sodium-coupled neutral amino acid transporter 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc38a6 PE=3 SV=1 CANONICAL=A0A8C2QJY9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0Z4/entry", "sequence": { "sequence": "MLPLSPLIDSSVTKALRTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLPGDHSGSWYLDGQTLLLIICVGIVFPLSLLPKIGFLGYTSSLSFFFMVFFALVVVIKKWSIPCPVTLKCIDGVFQISNATDDCKPKLFHFSKESIYALPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLLYFVSALFGYLTFYDKVESELLQGYSKYLPHDVVVMAVKLCILFAVLLTVPLIHFPARKALMMILFSNFPFSWIRHSLTTLALNIIIVLLAIYVPDIRNVFGIVGASTSTCLIFVFPGLFYLKLSREDFLSWKKLGALFLLITGTLVGSFSLALIIFDWVNNK", "length": 372, "header": "tr|A0A9J7H0Z4-1|A0A9J7H0Z4_CRIGR Computationally mapped isoform of Probable sodium-coupled neutral amino acid transporter 6 isoform X3 OS=Cricetulus griseus OX=10029 GN=Slc38a6 PE=3 SV=1 CANONICAL=A0A8C2QJY9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "L-glutamine transmembrane transporter activity", "id": "GO:0015186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015186", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9" } ], "pmid": "" }, { "name": "L-glutamate transmembrane transporter activity", "id": "GO:0005313", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005313", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QJY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJY9" }, { "id": "PF01490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid transporter transmembrane", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 449, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 235, "end_pos": 237 }, { "start_pos": 285, "end_pos": 287 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614472.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508086", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508086" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgef26", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01221", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01221", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11938", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11938", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772368", "url": "https://www.ncbi.nlm.nih.gov/gene/100772368", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035797", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508086", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508086", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QK10-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSESEVDFSSNGVTPLWRRRSTPPLQLLGRSKPRPQSYQSPSGLLITDFPVEELAALPVPQTPSRVSAAPDGRMVSRSPQLLCPHRRPVTNGRSVSPDYRAASPRLRRPKSPLVLHAASGGSPKPSANGTVASSAALLGASRTPDAPDPEEDRTVVTASKVSSPIANGLVPKNDSPGSASLTGQTARDLEPGSSRLSPAPQHRSSEQKLPLQRLPSQGNELPNPSVVLSTNSPAALKMGKQQIIPKSLASEIKLSKSNSQNVEPHRRLLKVRSMVEGLGAPLGHEGEEGEVDNDLDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSKKKNRMSQPVLKAVMEDKEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDSDEESEPKEQKPEEKIVIHHKPLRSTWSQLSAVKRNGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKDSKELSDTMTKTERHHLFSNITDVCEASKKFFTELEARHQNNILIDDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSKRMSRQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDNEELNSSPGKNTSTMLYSRQSSATHLFTLTVLSNHANEKVDMLLGAETQSERARWITALGHSSGKQPPDRTTLTQVEIIRSFTAKQPDELSLQVADVVLIYQRVGDGWYEGERLRDGERGWFPMECAKEITCQATIDKNVERMGRLLGLETNV", "length": 865, "header": "tr|A0A8C2QK10-1|A0A8C2QK10_CRIGR Isoform 1 of Rho guanine nucleotide exchange factor 26 OS=Cricetulus griseus OX=10029 GN=Arhgef26 PE=4 SV=1 CANONICAL=A0A8C2QK10-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QK10-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10/entry", "sequence": { "sequence": "MDSESEVDFSSNGVTPLWRRRSTPPLQLLGRSKPRPQSYQSPSGLLITDFPVEELAALPVPQTPSRVSAAPDGRMVSRSPQLLCPHRRPVTNGRSVSPDYRAASPRLRRPKSPLVLHAASGGSPKPSANGTVASSAALLGASRTPDAPDPEEDRTVVTASKVSSPIANGLVPKNDSPGSASLTGQTARDLEPGSSRLSPAPQHRSSEQKLPLQRLPSQGNELPNPSVVLSTNSPAALKMGKQQIIPKSLASEIKLSKSNSQNVEPHRRLLKVRSMVEGLGAPLGHEGEEGEVDNDLDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSKKKNRMSQPVLKAVMEDKEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDSDEESEPKEQKPEEKIVIHHKPLRSTWSQLSAVKRNGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKDSKELSDTMTKTERHHLFSNITDVCEASKKFFTELEARHQNNILIDDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSKRMSRQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDNEELNSSPGKNTSTMLYSRQSSATHLFTLTVLSNHANEKVDMLLGAETQSERARWITALGHSSGKQPPDRTTLTQVEIIRSFTAKQPDELSLQVADVVLIYQRVGDGWYEGERLRDGERGWFPMECAKEITCQATIDKNVERMGRLLGLETNV", "length": 865, "header": "tr|A0A8C2QK10-1|A0A8C2QK10_CRIGR Isoform 1 of Rho guanine nucleotide exchange factor 26 OS=Cricetulus griseus OX=10029 GN=Arhgef26 PE=4 SV=1 CANONICAL=A0A8C2QK10-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772368", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772368", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XBI4-1", "protein_name": "Rho guanine nucleotide exchange factor 26", "gene_name": "ARHGEF26", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "LDANAEAAMDAGGGALGKRRGAARPRGKPRPQSYQSPGGLLVTDFPVEDRCAFTLAQPAATVSAAPRGGSPRLPARVGSEPPAGLLALLSSASLGFVANGAFPAPGGPQPRGARGEAERGPAGPEGISRAMSPERGVAPPAPLPEQPAVTLSTHSPAALKVGTQQIIPRSLASDSKAAHKGGAHGADAGRRVLKARSMVESPGVLLGADEETEGEPDSPGVLRRGLRSTSYRRAVVSGIDLDGSANFKKKNRMSQPILKAVVEDKEKFSSLGRTKKKTLKGQGTFDGEENAVLYQNYKEKALDNDSDEESEPREQKSDEKVVFPYKPLRSTWSQLSVVKKNGLSETISQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSRELSLTMTKTESHHLFSNIADVYEASKKFFKELEARHQNNIFIDDISDIVEKHTSSTFDPYVKYCTNEVYQQRTLQKLLATNPAFKEALSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYENCKQALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTGLFSKRTSRQQVYFFLFNDVLIITKKKSEESYNVTDYSLRDQLVVQQCDSEELTSSPVKNTSAMLYSRQSSPVHLFRLSVLSNHAGEKVELLLGTDTQSERARWIAVLGQDRDRQSTDRATLTQVEIIRTYTAKQSDELSLQVADVVLVYQKVNDGWYEGERLRDGERGWFPMECAKEITCRATIDKNMERMGRLLGLETNV", "length": 785 }, "evidence": [ { "id": "A0A8C2QK10", "url": "https://omabrowser.org/oma/group/A0A8C2QK10/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TQP7-1", "protein_name": "Rho guanine nucleotide exchange factor 26", "gene_name": "ARHGEF26", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDTESEVDFSSNSLTPLWRRRSTPQLQLLGRSKPRPQSYQSPSGLLITDFPVEDRETLPAAQTLAEVPGASDGRTVQRSPLLLCAHRRAVTNGRTVSQEYRAVSPRLRRPKSPQVPRVASGGSPKSPANGTVTKPAPQQLHPPRTPRAPSPCSPEGDKTGFPTSPLPSPAANGLSPNISSQGAGSLSGSMAKDPERGPSRLSPSLPKRSLEQKLPLQRLPSPENELLENPSVVLSTNSPAALKVGKQQIIPKSLASEIKISKSNSLNVEPHKRLLKVRSMVEGLGAPLGPAEDEGEAEHDLDSPGSLRRGLRSTSYRRAVVSGVDFDSPGTSKKKNRMSQPVLKAVMEDKEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDSDEESEPKEQKSDEKIVIHHKPLRSTWSQLSAVKRNGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKALSDTMTKTESHHLFSNITDVCEASKKFFTELEARHQNNIFIEDISDIVEKHTTSTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSKRTSKQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDSEELNSSPGKNSSTMLYSRQNSASHLFTLTVLSNHANEKVEMLLGAETQSERARWITALGHSSGKHPPDRTSLTQVEIIRSFTAKQPDELSLQVADVVLIYQHVSDGWYEGERLRDGERGWFPMECAKEITCQATIDKNVERMGRLLGLETNV", "length": 870 }, "evidence": [ { "id": "A0A8C2QK10", "url": "https://omabrowser.org/oma/group/A0A8C2QK10/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3YYY8-1", "protein_name": "Rho guanine nucleotide exchange factor 26", "gene_name": "Arhgef26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDGESEVDFSSNGVTPLWRRRSTPPLQLLSRSKPRPQSYQSPSGLLITDFPVEELAALPTPQTPVRVPADPDDRTVSRSPQLLSAHRRPVTNGRTVSPDYRAASPRLRRPKSPLVSYAASGGSPKSTSNGTVASPAALLSRASRTPDTPASCATDEDCTGVTASKVSSPIANGLAHKTDSSGPVSQTGQPAGDLELAPSRLSPALPHKSSEQKLPLQRLPSQGNELPNPSVVLSTNSPAALKMGKQQIIPKSLASEIKLSKSNSQNVESHRRLLKVRSMVEGLGAPLGHEGEEGEVDNDMDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSKKKNRMSQPVLKAVMEDKEKFSSLGRIKKKILKGQGTFDGEENAVLYQNYKEKALDIDSDEEPEAKEQKAEERIVIHHKPLRSTWSQLSAVKRNGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKELTDTMTKTERHHLFSNITDVWEASKKFFTELEARHQNNIFIEDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSKRMSKQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDNEELNSSPGKNPSTMLYSRQSSATHLFTLTVLSNHASEKVDMLLGAETQSERARWITALGHSSGKQPPDRTTLTQVEIIRSFTAKQPDELSLQVADVVLIYQRVGDGWYEGERLRDGERGWFPMECAKEITCQATIDKNVERMGRLLGLETNV", "length": 869 }, "evidence": [ { "id": "A0A8C2QK10", "url": "https://omabrowser.org/oma/group/A0A8C2QK10/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4A1D2-1", "protein_name": "Rho guanine nucleotide exchange factor 26", "gene_name": "Arhgef26", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGESEVDFSSNGVTPLWRRRSTPPLQLLGRSKPRPQSYQSPSGLLITDFPVEELAALPAPQTPVPVPAGPEGRTVSRSPQLLCAHRRPVTNGRTVSPDYRAASPRLRRPKSPLVSYAASGGSPKSAVNGTVSSPAALLSRASRTPDIPASSAPGEDRTRVTASKVSSPTANGLAPKTDSSGPVSQTGQSAGDLEPSPSRLSPAPQHRSSEQKLPLQRLPSQGNELPNPSVILSTNSPAALKMGKQQIIPKSLASEIKLSKSNSQNVEPHRRLLKVRSMVEGLGAPLGPEGEESEADNDIDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSKKKNRMSQPVLKAVMEDKEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDSDEEPEPKEQKPEEKIVIHHKPLRSTWSQLSAVKRNGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKDSKELTDTMTKTERHHLFSNITDVWEASKKFFTELEARHQNNIFIEDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLTTNPSFKEVLSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSKRMSKQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDNEELNSSPGKNTSTMLYSRQSSATHLFTLTVLSNHANEKVDMLLGAETQSERARWITALGHSSGKQPPDRTTLTQVEITRSFTAKQPDELSLQVADVVLIYQRVGDGWYEGERLRDGERGWFPMECAKEITCQATIDKNVERMGRLLGLETNV", "length": 869 }, "evidence": [ { "id": "A0A8C2QK10", "url": "https://omabrowser.org/oma/group/A0A8C2QK10/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "I3LS68-1", "protein_name": "Rho guanine nucleotide exchange factor 26", "gene_name": "ARHGEF26", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGESEVDFSSNNLTPLWRRRSTPQPQLLGRSKPRPQSYQSPSGLLITDFPVEDRGTLPAVQTPAQVPTSSDGRTVQRSPLLLCAHRRAVTNGRTVSPECRAVSPRLRRPKSPQVPKVASGGAPKSPANGTVTSPAPQQLHPPHPPRTPQVPAPCSSEDRARFPASPLPSSAANGLTPNIASPGARSLPGQMAKDPERTPSRLSPAPQKRYLEQKLPLQRLPSQENELPENPSVVLSTNSPAALKVGKHQIIPKSLASEIKISKSNNQNVEPHKRLLKVRSMVEGLGAPLGPAEDEGEAENDVDSPGSLRRGLRSTSYRRAVVSGVDFDSPTTSKKKNRMSQPVLKAVMEDKEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDSDEESEPKEEKSDEKIVIHHKPLRSTWSQLSAVKRNGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKELSDTMTKTESHHLFSNITDVCEASKKFFTELEARHQNNIFIDDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYETCKRALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSKRTSKQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDGEELNSSPGKNSSTMLYSRQNSANHLFTLTVLSNHANEKVEMLLGAETQSERARWITALGHSSGKQPPDRTSLTQVEIIRSFTAKQPDELSLQVADVVLIYQRVGDGWYEGERLRDGERGWFPMECAKEITCQATIDKNVERMGRLLGLETNV", "length": 872 }, "evidence": [ { "id": "A0A8C2QK10", "url": "https://omabrowser.org/oma/group/A0A8C2QK10/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q96DR7-1", "protein_name": "Rho guanine nucleotide exchange factor 26", "gene_name": "ARHGEF26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGESEVDFSSNSITPLWRRRSIPQPHQVLGRSKPRPQSYQSPNGLLITDFPVEDGGTLLAAQIPAQVPTASDSRTVHRSPLLLGAQRRAVANGGTASPEYRAASPRLRRPKSPKLPKAVPGGSPKSPANGAVTLPAPPPPPVLRPPRTPNAPAPCTPEEDLTGLTASPVPSPTANGLAANNDSPGSGSQSGRKAKDPERGLFPGPQKSSSEQKLPLQRLPSQENELLENPSVVLSTNSPAALKVGKQQIIPKSLASEIKISKSNNQNVEPHKRLLKVRSMVEGLGGPLGHAGEESEVDNDVDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSKKKNRMSQPVLKVVMEDKEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDSDEESEPKEQKSDEKIVIHHKPLRSTWSQLSAVKRKGLSQTVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKELSDTMTKTERHHLFSNITDVCEASKKFFIELEARHQNNIFIDDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIESHEDCRNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGARKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSRRTSKQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDNEELNSSPGKNSSTMLYSRQSSASHLFTLTVLSNHANEKVEMLLGAETQSERARWITALGHSSGKPPADRTSLTQVEIVRSFTAKQPDELSLQVADVVLIYQRVSDGWYEGERLRDGERGWFPMECAKEITCQATIDKNVERMGRLLGLETNV", "length": 871 }, "evidence": [ { "id": "A0A8C2QK10", "url": "https://omabrowser.org/oma/group/A0A8C2QK10/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 717, "end_pos": 719, "annotation": "n_glycosylation_sequon" }, { "start_pos": 723, "end_pos": 725, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QK10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 433, "end_pos": 617, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QK10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 649, "end_pos": 776, "start_aa": "Trp", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QK10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK10" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 783, "end_pos": 844, "start_aa": "Thr", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 174, "end_pos": 176 }, { "start_pos": 480, "end_pos": 482 }, { "start_pos": 717, "end_pos": 719 }, { "start_pos": 723, "end_pos": 725 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252902", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252902" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccnyl1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15", "locus": {} } ], "crossref": [ { "id": "cd20540", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20540", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760997", "url": "https://www.ncbi.nlm.nih.gov/gene/100760997", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760997", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760997", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QK15", "url": "https://www.orthodb.org/?gene=A0A8C2QK15", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27989", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27989", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252902", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252902", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QK15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QK15-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNTLTCCVSPNASPKLGRRAGPAEPDYESEIYEAAAGDAVAVAPAPAAAVEPAELDFGAGEGHHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTIKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSLSADNFIGIQRSNAILS", "length": 364, "header": "tr|A0A8C2QK15-1|A0A8C2QK15_CRIGR Isoform 1 of Cyclin-Y-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccnyl1 PE=3 SV=1 CANONICAL=A0A8C2QK15-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QK15-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15/entry", "sequence": { "sequence": "MGNTLTCCVSPNASPKLGRRAGPAEPDYESEIYEAAAGDAVAVAPAPAAAVEPAELDFGAGEGHHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTIKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSLSADNFIGIQRSNAILS", "length": 364, "header": "tr|A0A8C2QK15-1|A0A8C2QK15_CRIGR Isoform 1 of Cyclin-Y-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccnyl1 PE=3 SV=1 CANONICAL=A0A8C2QK15-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FA76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA76/entry", "sequence": { "sequence": "MGNTLTCCVSPNASPKLGRRAGPAEPDYESEIYEAAAGDAVAVAPAPAAAVEPAELDFGAGEGHHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHCNLSNILPHKKQREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSLSADNFIGIQRSNAILS", "length": 313, "header": "tr|A0A9J7FA76-1|A0A9J7FA76_CRIGR Computationally mapped isoform of Cyclin-Y-like protein 2 OS=Cricetulus griseus OX=10029 GN=Ccnyl1 PE=3 SV=1 CANONICAL=A0A8C2QK15-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760997", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760997", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK15", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QK15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK15" }, { "id": "SM00385", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00385" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-like", "eco_id": "ECO_0000259", "start_pos": 196, "end_pos": 281, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 162, "end_pos": 164 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QK24-1", "uniprot_ac": "A0A8C2QK24", "uniprot_id": "A0A8C2QK24_CRIGR", "mass": { "chemical_mass": 30793.0, "monoisotopic_mass": 30793.0 }, "refseq": { "ac": "XP_035302209", "name": "kallikrein-10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302209" }, "gene_names": [ { "name": "Klk10", "type": "recommended", "evidence": [ { "id": "A0A8C2QK24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK24" } ] }, { "name": "Klk10", "type": "synonym", "evidence": [ { "id": "XP_035302209", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302209" } ] } ], "protein_names": [ { "name": "Kallikrein-10", "type": "synonym", "evidence": [ { "id": "A0A8C2QK24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK24/entry#names_and_taxonomy" } ] }, { "name": "kallikrein-10", "type": "synonym", "evidence": [ { "id": "XP_035302209", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302209" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302209", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302209" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QK24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klk10", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK24", "locus": {} } ], "crossref": [ { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752352", "url": "https://www.ncbi.nlm.nih.gov/gene/100752352", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752352", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752352", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNKPLWA", "url": "https://omabrowser.org/oma/group/NNKPLWA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QK24", "url": "https://www.orthodb.org/?gene=A0A8C2QK24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302209", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302209", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QK24", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QK24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAPLLYFTASGALALVKLLLPLLMVQLWGSQALLLPGNATRVDLETSTVPCTRDSQPWQVSLFHNLQFQCAGVLVDQSWVLTAAHCWRKKPLRARVGDDHLLLFQKEQLRSTNSPVFHPKYQPCSGPILPHRSDEHDLMMLKLSSPIVPTPSVHPIQLPFQCAQPGQECQVAGWGTTAARRVKYNRSLSCSRVTLLSQKQCEVFYPGVITNNMICAGLDRNQDSCQSDSGGPLVCDDTLHGILSWGIYPCGAALHPAVYTEICKYSTWIRRVIRSS", "length": 277, "header": "tr|A0A8C2QK24-1|A0A8C2QK24_CRIGR Isoform 1 of Kallikrein-10 OS=Cricetulus griseus OX=10029 GN=Klk10 PE=4 SV=1 CANONICAL=A0A8C2QK24-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QK24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QK24/entry", "sequence": { "sequence": "MRAPLLYFTASGALALVKLLLPLLMVQLWGSQALLLPGNATRVDLETSTVPCTRDSQPWQVSLFHNLQFQCAGVLVDQSWVLTAAHCWRKKPLRARVGDDHLLLFQKEQLRSTNSPVFHPKYQPCSGPILPHRSDEHDLMMLKLSSPIVPTPSVHPIQLPFQCAQPGQECQVAGWGTTAARRVKYNRSLSCSRVTLLSQKQCEVFYPGVITNNMICAGLDRNQDSCQSDSGGPLVCDDTLHGILSWGIYPCGAALHPAVYTEICKYSTWIRRVIRSS", "length": 277, "header": "tr|A0A8C2QK24-1|A0A8C2QK24_CRIGR Isoform 1 of Kallikrein-10 OS=Cricetulus griseus OX=10029 GN=Klk10 PE=4 SV=1 CANONICAL=A0A8C2QK24-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 151, "start_aa": "Thr", "end_pos": 151, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr151", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 187 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613705.1) and transcript sequence (IACG01090869.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278191", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278191" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKD0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKD0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sec14l1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKD0", "locus": {} } ], "crossref": [ { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770988", "url": "https://www.ncbi.nlm.nih.gov/gene/100770988", "database": "GeneID", "categories": [ "Genome 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"https://www.ncbi.nlm.nih.gov/protein/XP_035304898", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPSSRGSVCPLLLLLLLLCLGAGPALGRNLPRPLEDSEPHLISSEPQTFDLFWEKLRNESSWHSGIPQAPSDSLERPANSPLGPALRGPKAAPEGQGERLLIADDLQLARGLTSQGWTGPPGSQELLEPETPAPHPVGAPHLMFINTTHSPQLRIATLPTAPQKPGGQAVQQPARNEGLMAKAKNSITQASPWDYQNSPHTLVPEAGAVRLVLGKQGGHEEGFQEAVQGPLLTQQEPVVPEVGSTSPIEVASTQEPGAQLDLALARSPPLPEGLPAEPPKKAGGGDTWEVSSLGPQPEQTDLLAGQDSPAPQPIPPSTSDTSDGQLRPAIASMNGADPISPQRVRGAMEAPGTPRSFIPDLPNSAQAANGTESPVRGPQPDEAEEWPGRPQSHPPAPPVQAPSTTRRGLVRVTTQRALGQPPPPEPSASSIAPVPASSPPANATAPPLRWGPLRQVLSFSWELHVYGVGVLFLLPALLALVTLAAALAGPRLALVAAVLVLVASALRSAYMLTDPYGSQARLGVRAGLVLYNLPFPLLLTALAALTLLGLGAGLPQPLQKPLLLGAVAPVHTAGLLVTDLFSTRPVLNLLTQGFSCAWGASVALGTLCLCRRRLLEGPRGWDASPGPRLLAVAGSLGLLASGLQLAASLWLYPGPGREGRFSWAWWGVHFWLRLLELTWALALALAALAATRPRPPTEHACWAKLLRLACPAPTGKSEVPERPNNCYAGPSGLATGGLDISKSLIRNAAEGGLPATPGSGPWGSAASLGRGRPGGPGMSRGSVGPAPSLSELDLRPPSPINLSRSIDAALFREHLVRDSVFHRCGLRGLASPPSGGALRPRRGSQPDAELDSAGGSLLRGRCRSLSEVCLRKPLPQHVVDPAVSAAAAGTSGSSLDSFSKGSLKISWNPWRHGLSSVDSLPLDELPSTVQLLPAPTPAPAPARAGEPQSEGQQRCKTSESRSASSDTIEL", "length": 971, "header": "tr|A0A8C2QKQ5-1|A0A8C2QKQ5_CRIGR Isoform 1 of Proline-rich transmembrane protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrt3 PE=4 SV=1 CANONICAL=A0A8C2QKQ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKQ5/entry", "sequence": { "sequence": "MAPSSRGSVCPLLLLLLLLCLGAGPALGRNLPRPLEDSEPHLISSEPQTFDLFWEKLRNESSWHSGIPQAPSDSLERPANSPLGPALRGPKAAPEGQGERLLIADDLQLARGLTSQGWTGPPGSQELLEPETPAPHPVGAPHLMFINTTHSPQLRIATLPTAPQKPGGQAVQQPARNEGLMAKAKNSITQASPWDYQNSPHTLVPEAGAVRLVLGKQGGHEEGFQEAVQGPLLTQQEPVVPEVGSTSPIEVASTQEPGAQLDLALARSPPLPEGLPAEPPKKAGGGDTWEVSSLGPQPEQTDLLAGQDSPAPQPIPPSTSDTSDGQLRPAIASMNGADPISPQRVRGAMEAPGTPRSFIPDLPNSAQAANGTESPVRGPQPDEAEEWPGRPQSHPPAPPVQAPSTTRRGLVRVTTQRALGQPPPPEPSASSIAPVPASSPPANATAPPLRWGPLRQVLSFSWELHVYGVGVLFLLPALLALVTLAAALAGPRLALVAAVLVLVASALRSAYMLTDPYGSQARLGVRAGLVLYNLPFPLLLTALAALTLLGLGAGLPQPLQKPLLLGAVAPVHTAGLLVTDLFSTRPVLNLLTQGFSCAWGASVALGTLCLCRRRLLEGPRGWDASPGPRLLAVAGSLGLLASGLQLAASLWLYPGPGREGRFSWAWWGVHFWLRLLELTWALALALAALAATRPRPPTEHACWAKLLRLACPAPTGKSEVPERPNNCYAGPSGLATGGLDISKSLIRNAAEGGLPATPGSGPWGSAASLGRGRPGGPGMSRGSVGPAPSLSELDLRPPSPINLSRSIDAALFREHLVRDSVFHRCGLRGLASPPSGGALRPRRGSQPDAELDSAGGSLLRGRCRSLSEVCLRKPLPQHVVDPAVSAAAAGTSGSSLDSFSKGSLKISWNPWRHGLSSVDSLPLDELPSTVQLLPAPTPAPAPARAGEPQSEGQQRCKTSESRSASSDTIEL", "length": 971, "header": "tr|A0A8C2QKQ5-1|A0A8C2QKQ5_CRIGR Isoform 1 of Proline-rich transmembrane protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrt3 PE=4 SV=1 CANONICAL=A0A8C2QKQ5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 757, "start_aa": "Thr", "end_pos": 757, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr757", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 937, "start_aa": "Thr", "end_pos": 937, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr937", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKQ5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKQ5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751627", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751627", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 802, "end_pos": 804, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QKQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKQ5" }, { "id": "PF25987", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25987" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Proline-rich transmembrane protein 3/4", "eco_id": "ECO_0000259", "start_pos": 440, "end_pos": 711, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 757, 937 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 147, "end_pos": 149 }, { "start_pos": 370, "end_pos": 372 }, { "start_pos": 443, "end_pos": 445 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 802, "end_pos": 804 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QKS9-1", "uniprot_ac": "A0A8C2QKS9", "uniprot_id": "A0A8C2QKS9_CRIGR", "mass": { "chemical_mass": 65293.0, "monoisotopic_mass": 65293.0 }, "refseq": { "ac": "XP_003497417", "name": "actin-binding protein IPP", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497417" }, "gene_names": [ { "name": "Ipp", "type": "recommended", "evidence": [ { "id": "A0A8C2QKS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9" } ] }, { "name": "Ipp", "type": "synonym", "evidence": [ { "id": "XP_003497417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497417" } ] } ], "protein_names": [ { "name": "Actin-binding protein IPP", "type": "recommended", "evidence": [ { "id": "A0A8C2QKS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9/entry#names_and_taxonomy" } ] }, { "name": "Intracisternal A particle-promoted polypeptide", "type": "synonym", "evidence": [ { "id": "A0A8C2QKS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9/entry#names_and_taxonomy" } ] }, { "name": "actin-binding protein IPP", "type": "synonym", "evidence": [ { "id": "XP_003497417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497417" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613647.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497417" } ] }, { "annotation": "May play a role in organizing the actin cytoskeleton.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9#function" }, { "database": "UniProtKB", "id": "ARBA00053616", "url": "https://www.uniprot.org/uniprotkb/ARBA00053616#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ipp", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9", "locus": {} } ], "crossref": [ { "id": "cd18256", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18256", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18466", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18466", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774648", "url": "https://www.ncbi.nlm.nih.gov/gene/100774648", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030104", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030104", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774648", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774648", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CYDPRDN", "url": "https://omabrowser.org/oma/group/CYDPRDN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QKS9", "url": "https://www.orthodb.org/?gene=A0A8C2QKS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF35", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF35", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497417", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKEECAKAGDSSFSSDKHAELILAQINRMRNGQHFCDVQLQVGKETFQVHRLVLAASSPYFAALFAGGMKESSKDVVQILGIEAGIFQLLLDFIYTGLVNIAVNNVQELIVAADMLQLTEVVNLCCEFLKGQIDPQNCIGLFQFSEQIACHDLLEFTENYIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPIRFPLLPSQRLLKYIEGVSDFNLRVALQTLLKEYCEVSKSPKENKFCSFLQTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARCGLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVVGNMAVSRYYFGCCEMQGLIYVVGGISNEGLELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSIGGWNETQDALHTVEKYSFEEEKWVEVASMKVPRAGMCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL", "length": 584, "header": "tr|A0A8C2QKS9-1|A0A8C2QKS9_CRIGR Isoform 1 of Actin-binding protein IPP OS=Cricetulus griseus OX=10029 GN=Ipp PE=4 SV=1 CANONICAL=A0A8C2QKS9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9/entry", "sequence": { "sequence": "MSKEECAKAGDSSFSSDKHAELILAQINRMRNGQHFCDVQLQVGKETFQVHRLVLAASSPYFAALFAGGMKESSKDVVQILGIEAGIFQLLLDFIYTGLVNIAVNNVQELIVAADMLQLTEVVNLCCEFLKGQIDPQNCIGLFQFSEQIACHDLLEFTENYIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPIRFPLLPSQRLLKYIEGVSDFNLRVALQTLLKEYCEVSKSPKENKFCSFLQTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARCGLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVVGNMAVSRYYFGCCEMQGLIYVVGGISNEGLELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSIGGWNETQDALHTVEKYSFEEEKWVEVASMKVPRAGMCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL", "length": 584, "header": "tr|A0A8C2QKS9-1|A0A8C2QKS9_CRIGR Isoform 1 of Actin-binding protein IPP OS=Cricetulus griseus OX=10029 GN=Ipp PE=4 SV=1 CANONICAL=A0A8C2QKS9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774648", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774648", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYR6-1", "protein_name": "Actin-binding protein IPP", "gene_name": "Ipp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKEEYAKAADSSFSSDKHAQLILAQMNKMRTGQHFCDVQLQVGKETFQVHRLVLAASSPYFAALFTGGMKESSKDVVQILGVEAGIFQLLLDFIYTGLVNIAVSNVQELIVAADMLQLTEVVNLCCDFLKGQIDPQNCIGLFQFSEQIACHDLLEFTENYIHVHFLEVHSGEEFLALTKDQLIRILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPVRFPLLPSQRLLKYIEGVSDFNLRVALQTLLKEYCEVCKSPKENKFCSFLQTSKARPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARCGLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWVGAEIGDTIERFDPDENKWEVVGNMAVSRYYFGCCEMQGLIYAVGGISNEGLELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYAIGGWNETQDALHTVEKYSFEEEKWIEVASMKVPRAGMCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL", "length": 584 }, "evidence": [ { "id": "A0A8C2QKS9", "url": "https://omabrowser.org/oma/group/A0A8C2QKS9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A286ZQU9-1", "protein_name": "Intracisternal A particle-promoted polypeptide", "gene_name": "IPP", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASEGCAKAGDSPFSSDKHAQLILAQMNKMRNGQHFCDVQLQVGKETFNVHRLVLAASSPYFAALFTGGMKESSKDVVQILGIEAGIFQVLLDFIYTGTVNIGVNNVQELIVAADMLQLTEVVNLCCEFLKGQIDPQNCIGIFQFSEQIACHDLLEFTENYIHVHFLEVHSGEEFLALTKDQLIKVLRSEELSIEDEYQVFLAAMQWILKDLGRRRKHVVEVLDPIRFPLLPPQRLLKYIEGVSDFNLRVALQTLLKEYCEVSKSPKENKFCNFLQTSKVRPRKKARKYLYAVGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWIGAEIGNTIERFDPDENKWEVVGNMAVSRYYFGCCEMQGLIYVVGGISNEGIELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSVGGWNETQDALHTVEKYSFEEEKWVEVASMKVPRAGMCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL", "length": 528 }, "evidence": [ { "id": "A0A8C2QKS9", "url": "https://omabrowser.org/oma/group/A0A8C2QKS9/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E1BIL6-1", "protein_name": "Actin-binding protein IPP", "gene_name": "IPP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANEGCAKAGDSHFSLDKHAQLILAQINKMRNGEHFCDVELQVGKETFKVHRLVLAASSPYFAALFTGGMKESSKDVVQILGIEAGIFQILLDFIYTGIVNIGVNNVQELIVAADMLQLTEVVNLCCEFLKGQIDPLNCIGIFQFSEQIACHDLLEFTENYIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPIRFPLLPPQRLVKYIEGISDFNLRVALQTLLKEYCEVCKSPKENKFCSFLQTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARCGLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWVGAEIGNTVERFDPDENKWEVVGNMAVSRYYFGCCEMQGLIYVVGGISNEGIELCSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYAIGGWNETQDALHTVEKYSFEEEKWVEVASMKVPRAGLCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL", "length": 584 }, "evidence": [ { "id": "A0A8C2QKS9", "url": "https://omabrowser.org/oma/group/A0A8C2QKS9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P28575-1", "protein_name": "Actin-binding protein IPP", "gene_name": "Ipp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSKEECPKAADNSFSSDKHAQLILAQMNKMRSGQHFCDVQLQVGKETFQVHRLVLAASSPYFAALFTGGMKESSKDVVQILGVEAGIFQLLLDFIYTGVVNIAVTNVQELIVAADMLQLTEVVNLCCDFLKGQIDPQNCIGLFQFSEQIACHDLLEFTENYIHVHFLEVHTGEEFLGLTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPVRFPLLPSQRLLKYIEGVSDFNLRVALQTLLKEYCEVCKSPKENKFCSFLQTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARCGLGVAVVGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVVGSMAVSRYYFGCCEMQGLIYAVGGISNEGLELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYAIGGWNETQDALHTVEKYSFEEEKWVEVASMKVPRAGMCAVTVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL", "length": 584 }, "evidence": [ { "id": "A0A8C2QKS9", "url": "https://omabrowser.org/oma/group/A0A8C2QKS9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VK21-1", "protein_name": "Kelch-like protein diablo", "gene_name": "Ipp", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPPLKTYQIHEYNGNTSPNANANQNANQNPTGGGGDGDFFGQNLGSGATAASHRTNLPSYCNAQYPFKVLSNLNQLREQSRFCDVEIIAGMATLSAHRAVLSAASAYFEAMFRPELGLNEVKQKSVVLHTIDGDILHILLDFIYTGRCEITQSNVQELLAAADMLQLNEVVDGCCEFLCRELHASNALGILRFAEAHNCESLAKSALNFVHANFPAVTLEDEFLETPQTLLSQLLNSELLRVDSESQVFQAALRWIKHDVTQRRCYVFDVLSHVRMALVPVKVIDKALKDDCRDMSVKIALRSICRDIASKRGQLVPLRVCPRQLAKKNIYIIGGSHRDTPRTWNSADCIFETVAKFDIFRREWTETAPMEVGRILPGVSALNGKIYVVGGERGSQILANGEVYDPQNDVWQPIAPMIVPRCEFGLCTMGGNLFAVGGWIGDDIGGSMECYDPEQDLWKLMGSMPQPRFSMGVVSFEGLIYIVGGCTTTTRHLPDLISFNPVTKEWNELARMQTARCQMGVAVLDRYLYVVGGSSISQDILSSVERYSFDEDKWTTVCALNVPRAIPAVVAADGLLYVAGGDQPCEVNFYRAQVTINAVECYDPLSDTWKNCPDLPVSRSEAGAVVV", "length": 627 }, "evidence": [ { "id": "A0A8C2QKS9", "url": "https://omabrowser.org/oma/group/A0A8C2QKS9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y573-1", "protein_name": "Actin-binding protein IPP", "gene_name": "IPP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANEDCPKAADSPFSSDKHAQLILAQINKMRNGQHFCDVQLQVGQESFKAHRLVLAASSPYFAALFTGGMKESSKDVVPILGIEAGIFQILLDFIYTGIVNIGVNNVQELIIAADMLQLTEVVHLCCEFLKGQIDPLNCIGIFQFSEQIACHDLLEFSENYIHVHFLEVHSGEEFLALTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPIRFPLLPPQRLLKYIEGVSDFNLRVALQTLLKEYCEVCKSPKENKFCSFLQTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARSGLGVTVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVVGNMAVSRYYFGCCEMQGLIYVIGGISNEGIELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYSVGGWNETQDALHTVEKYSFEEEKWVEVASMKVPRAGMCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL", "length": 584 }, "evidence": [ { "id": "A0A8C2QKS9", "url": "https://omabrowser.org/oma/group/A0A8C2QKS9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKS9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 494, "end_pos": 496, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QKS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKS9" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 104, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 494, "end_pos": 496 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QKT7-1", "uniprot_ac": "A0A8C2QKT7", "uniprot_id": "A0A8C2QKT7_CRIGR", "mass": { "chemical_mass": 217155.0, "monoisotopic_mass": 217155.0 }, "refseq": { "ac": "XP_035304135", "name": "protein GREB1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304135" }, "gene_names": [ { "name": "Greb1", "type": "recommended", "evidence": [ { "id": "A0A8C2QKT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" } ] }, { "name": "Greb1", "type": "synonym", "evidence": [ { "id": "XP_035304135", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304135" } ] } ], "protein_names": [ { "name": "Protein GREB1", "type": "synonym", "evidence": [ { "id": "A0A8C2QKT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7/entry#names_and_taxonomy" } ] }, { "name": "protein GREB1", "type": "synonym", "evidence": [ { "id": "XP_035304135", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304135" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304135", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304135" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Greb1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7", "locus": {} } ], "crossref": [ { "id": "100764943", "url": "https://www.ncbi.nlm.nih.gov/gene/100764943", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048659", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048659", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764943", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764943", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SEYSVEW", "url": "https://omabrowser.org/oma/group/SEYSVEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QKT7", "url": "https://www.orthodb.org/?gene=A0A8C2QKT7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15720", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15720", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15720:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15720:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20267", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20267", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20688", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20688", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20691", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20691", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20692", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20692", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304135", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304135", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNSYAGQLKSTRFEEVLHNSIEASLRSNTLVPRPIFSQLYLEAEQQLSSLEGGGRVDNEDEEDEGEGGLEPSSPSNAYQLPPPPEGCCTTDGFCQAGKDLRLVSISKEPIEVPAGFLLVGAKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLSTQPKKQKHLKYYLARNAQGALTKGPLICWKGSEFRSRQNSTNTCSSSLFPPLESSGSPAAFPSEPVPGTNPSVPVGAQQAGPASDHPSVTTASGPTVFNGKDSPKHPQLAKSSLSALPRPSALGILPNSGPPKKRHKGWSPESKSAMDGGFPQCGGNRAQHEGTGIPCVPQPGLVGPASVTFPVVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVISPLLYTCYQNSQSLSRAYEQHGASTMQPISEETQLLLTVYYLVQLAADQVPLMEDLEQIFLRSWRESHLTEIRQHQQAPPQPFPPAPGTAAPVTSAQLPWLAGLAASSCNDSVHVIECAYSLAEGLSEMFRLLIEGKLSKTNYVVIICACRNAAIDSCIAVTGKYQARILSESLLSPAEYQREVHYELVTGKVDSLGTFFSSLCPEGDIDILLDKFHQENQGHVSSSFTASSTKKSAVLDASGVPVCTSYRLEPRGVRPFQLAVAQKLLSHVCSIADSSTQNLDLGSFEKVDFLICIPPSEVTYQQTVFHVWHSGVLLELGLEKEPVTKQRAEQHVLKLDTEAQARFKAFLQNSFQNPHTLFILIHDHAHWDLVSSAVHNIYSQSDPSVGLVDRLLNCREVKEAPNIVTLHVTSFPYALQTQHTLISPYNEIHWPVSYSNGVDLYHENKKYFGLSEFIDSTLSGHSLPLLRYDSSFEAMVTALGKRFPRLHSAVIRTFVLVQHYAAAMMAVSGLPQMKNHTSVETLEITQNLLNSPKQCPCGHGLMVLLRVPCSPLAAVAYERLAHVRARLSLEEHFEIILGHPSSGITVGKHFVKQLKMWQKIEDAEWRPQTYLELEGLPCILIFSGMDPHGESLPRSLRYCDLRLINSSCLVRTALEQELGLAAYFVSNDIPLEKGPKNEALESDGEKLSSADEDEEAGMEGCFEAGSTSEKRSPVKRERSHSHDSASSTLSSKASGSVLYGESLVQLSGPPQGELARSPLPCGPAEEGRTPGEVQQLRVSQGPTVISRHSPGLAPQPDSSLRTGQRSLQVPAAPSSQLSSSSSSGSSSTCAVPTANVVVLQASQCSMAKACRQPPIVFLPKLVYDMLVSTDSSGLPKSASLLPSPSVMWTSSFRPLLSKMMTSTEQSLYYRQWTVPRPSHMDYGNRAEGHVDSFHPRRLLLSGPPQIGKTGAYLQFLSILSRMLIRLTEVDVYDEEEINTSLQEESDWHYLQLTDPWPDLELFQKMPFDYIIHDPKYEDASLICSHHQSIKSEDREMPRKPEDLYMRRQTARMRLSKYAAYNTYHHCEQCHQYMGFHPHYQLYESTLHAFAFSYSMLGEEIQLHFIIPKSKEHHFVFSQPGGQLESMRLPLVTDKSHECIKSPTFTPTTGRHEHGLFNLYHAMDGANHLHVLVVKEYEMAIYKKYWPNHIMLVLPSIFNSAGVGAAHFLIKELCYHNLELERNRQEELGVKPQDIWPFIVISDDSCVMWNAADVDCAGERSREFSWSERNVSLKHVMQHIEASPNITHYALIGMRKWASKTRGREVQEPFSRCHVHDFIILNVDLTQNVQYNQNRFTCDDVDFNLRVHSAGLLLCRFNRFSVMKKQIAVGGHRSFHITSKVSDSSVAIVPSQYICAPDSKHTFLAAPAQLLLEKFLQYHSHCFFPLSLKNHSHPVLSVDCYLNLGPQISVCYVSSRPHSLNISCSDMTFSGLLLYLCDSFVGANFLKKFHFLKGATLCVICQDRNSLRQTVVRLELEDEWQFRLRDEFQTANAKEDRPLFFLTGRHV", "length": 1956, "header": "tr|A0A8C2QKT7-1|A0A8C2QKT7_CRIGR Isoform 1 of Protein GREB1 OS=Cricetulus griseus OX=10029 GN=Greb1 PE=3 SV=1 CANONICAL=A0A8C2QKT7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7/entry", "sequence": { "sequence": "MGNSYAGQLKSTRFEEVLHNSIEASLRSNTLVPRPIFSQLYLEAEQQLSSLEGGGRVDNEDEEDEGEGGLEPSSPSNAYQLPPPPEGCCTTDGFCQAGKDLRLVSISKEPIEVPAGFLLVGAKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLSTQPKKQKHLKYYLARNAQGALTKGPLICWKGSEFRSRQNSTNTCSSSLFPPLESSGSPAAFPSEPVPGTNPSVPVGAQQAGPASDHPSVTTASGPTVFNGKDSPKHPQLAKSSLSALPRPSALGILPNSGPPKKRHKGWSPESKSAMDGGFPQCGGNRAQHEGTGIPCVPQPGLVGPASVTFPVVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVISPLLYTCYQNSQSLSRAYEQHGASTMQPISEETQLLLTVYYLVQLAADQVPLMEDLEQIFLRSWRESHLTEIRQHQQAPPQPFPPAPGTAAPVTSAQLPWLAGLAASSCNDSVHVIECAYSLAEGLSEMFRLLIEGKLSKTNYVVIICACRNAAIDSCIAVTGKYQARILSESLLSPAEYQREVHYELVTGKVDSLGTFFSSLCPEGDIDILLDKFHQENQGHVSSSFTASSTKKSAVLDASGVPVCTSYRLEPRGVRPFQLAVAQKLLSHVCSIADSSTQNLDLGSFEKVDFLICIPPSEVTYQQTVFHVWHSGVLLELGLEKEPVTKQRAEQHVLKLDTEAQARFKAFLQNSFQNPHTLFILIHDHAHWDLVSSAVHNIYSQSDPSVGLVDRLLNCREVKEAPNIVTLHVTSFPYALQTQHTLISPYNEIHWPVSYSNGVDLYHENKKYFGLSEFIDSTLSGHSLPLLRYDSSFEAMVTALGKRFPRLHSAVIRTFVLVQHYAAAMMAVSGLPQMKNHTSVETLEITQNLLNSPKQCPCGHGLMVLLRVPCSPLAAVAYERLAHVRARLSLEEHFEIILGHPSSGITVGKHFVKQLKMWQKIEDAEWRPQTYLELEGLPCILIFSGMDPHGESLPRSLRYCDLRLINSSCLVRTALEQELGLAAYFVSNDIPLEKGPKNEALESDGEKLSSADEDEEAGMEGCFEAGSTSEKRSPVKRERSHSHDSASSTLSSKASGSVLYGESLVQLSGPPQGELARSPLPCGPAEEGRTPGEVQQLRVSQGPTVISRHSPGLAPQPDSSLRTGQRSLQVPAAPSSQLSSSSSSGSSSTCAVPTANVVVLQASQCSMAKACRQPPIVFLPKLVYDMLVSTDSSGLPKSASLLPSPSVMWTSSFRPLLSKMMTSTEQSLYYRQWTVPRPSHMDYGNRAEGHVDSFHPRRLLLSGPPQIGKTGAYLQFLSILSRMLIRLTEVDVYDEEEINTSLQEESDWHYLQLTDPWPDLELFQKMPFDYIIHDPKYEDASLICSHHQSIKSEDREMPRKPEDLYMRRQTARMRLSKYAAYNTYHHCEQCHQYMGFHPHYQLYESTLHAFAFSYSMLGEEIQLHFIIPKSKEHHFVFSQPGGQLESMRLPLVTDKSHECIKSPTFTPTTGRHEHGLFNLYHAMDGANHLHVLVVKEYEMAIYKKYWPNHIMLVLPSIFNSAGVGAAHFLIKELCYHNLELERNRQEELGVKPQDIWPFIVISDDSCVMWNAADVDCAGERSREFSWSERNVSLKHVMQHIEASPNITHYALIGMRKWASKTRGREVQEPFSRCHVHDFIILNVDLTQNVQYNQNRFTCDDVDFNLRVHSAGLLLCRFNRFSVMKKQIAVGGHRSFHITSKVSDSSVAIVPSQYICAPDSKHTFLAAPAQLLLEKFLQYHSHCFFPLSLKNHSHPVLSVDCYLNLGPQISVCYVSSRPHSLNISCSDMTFSGLLLYLCDSFVGANFLKKFHFLKGATLCVICQDRNSLRQTVVRLELEDEWQFRLRDEFQTANAKEDRPLFFLTGRHV", "length": 1956, "header": "tr|A0A8C2QKT7-1|A0A8C2QKT7_CRIGR Isoform 1 of Protein GREB1 OS=Cricetulus griseus OX=10029 GN=Greb1 PE=3 SV=1 CANONICAL=A0A8C2QKT7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764943", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764943", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1LW89-1", "protein_name": "Growth regulating estrogen receptor binding 1", "gene_name": "Greb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGNSYAGQLKSTRFEEVLHNSIEASLRSNTLVPRPIFSQLYLEAEQQLSSLEGGSRADNEEEEEDGEGGLDPSSPPNAYQLPPPPEGCCTTDGFCQAGKDLRLVSISNEPIEVPAGFLLVGAKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLTTQPKKQKHLKYYLVRNAQGALTKGPLICWKGSEFRSRQNSTNTCSSSLFPPLESSGSLAAFPTEPAPGTNPSVPVGAQQAGPASDHPSVATATGPAVFNGKDSPKHPQLVKNSLCAAPRPTALGLLPNSGPPKKRHKGWSPESKSTTDGSFIQAVGNRAKHEGASMPCVPQAGLVGPTSVTFPVVASSEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSLSRSYEQHGASTMQPISEETQLLLTVYYLVQLAADQVPLMEDLEQIFLRSWRESHLTEIRQYQQVPPQPFPPATSTAAPVTSAQLPWLAGLAASSCNDSVHVIECAYSLAEGLSEMFRLLIEGKLSKTNYVVIICACRNAAIDSCIAVTGKYQARILSESLLSPAEYQREVHYELVTGKVDSLGAFFSSLCPEGDIDILLDKFHQENQGHVSSSFTASSTKKTAVLDASGVPMCTSYHQEPRGIRPFQLAVAQKLLSHVCSIADSSTQNLDLGSFEKVDFLICIPPSEVTYQQTVFHVWHSGVLLELGLEKEPVTKQRAEQHVLKLDTEAQARFKAFLQNSFQNPHTLFVLIHDHAHWDLVSSAVHNIYSQSDPSVGLVDRLLNCREVKEAPNIVTLHVTSFPYALQTQHTLISPYNEIHWPISYSNGVDLYHESKKYFGLSEFIDSTLSGHSLPLLRYDSSFEAMVTALGKRFPRLHSAVIRTFVLVQHYAAAMMAVSGLPQMKNHTSVETLEITQNLLNSPKQCPCGHGLMVLLRVPCSPLAAVAYERLAHVRARLALEEHFEIILGHPSSGITVGKHFVKQLKMWQKIEDAEWRPQTYLELEGLPCILIFSGMDPHGESLPRSLRYCDLRLINSSCLVRTALEQELGLAAYFVSNDIPLEKGPKNEALESDGEKLSSTDEDEEAGTEGCFEAGSTSEQRGPVKRERSHSHDSASSSLSSKASGSVLYGESLVQPSGLPQGEFARSSPPCGPAEEGRAPGEIQRLRVSQGPTVISRHSPGLVPQPDSSLRTGRRSLQVPAAPSSQLSSSSSGASSTCTVSTANVLVLQASQCSMAKACRQPPIVFLPKLVYDMLLSTDSSGLPKSASLLPSPSVMWTSSFRPLLSKMMTSTEQSLYYRQWTVPRPSHMDYGNRAEGRVDSFHPRRLLLSGPPQIGKTGAYLQFLSILSRMLIRLTEVDVYDEEEINTGLQEESDWHYLQLTDPWPDLELFQKMPFDYIIHDPKYEDASMICSHHQSIKSEDRGMSRKPEDLYVRRQTARMRLSKYAAYNTYHHCEQCQQYMGFHPHYQLSESTLHVFAFSCSMLGEEIQLHFIIPKSKEYHFVFSQPGGQLESMRLPLVTDKSYEHIKSPTFTPTTGRHEHGLFNLYHAMDGANHLHVLVVKEYEMAIYKKYWPNHIMLVLPSIFNSAGVGAAHFLIKELCYHNLELERNRQEELGVKPQDIWPFIVISDDSCVMWNVADVDCAGDRSREFSWSERNVSLKHIMQHIEASPNITHYALIGMRKWASKTRSREVQEPFSRCHVHDFIILNVDLTQNVQYNQNRFTCDDVDFNLRVHSAGLLLCRFNRFSVMKKQIAVGGHRSFHITSKVADSSVAIVPSQYICAPDSKHTFLAAPAQLLLEKFLQYHSHRFFPLSLKNHSHPVLSVDCYLNLGPQISVCYVSSRPHSLNVSCSDMMFSGLLLYLCDSFVGASFLKKFHFLKGATLCVICQDRNSLRQTVVRLELEEEWQFRLRDEFQTANAKEDRPLFFLTARHI", "length": 1955 }, "evidence": [ { "id": "A0A8C2QKT7", "url": "https://omabrowser.org/oma/group/A0A8C2QKT7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UHK3-1", "protein_name": "Protein GREB1", "gene_name": "Greb1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNSYAGQLKSTRFEEVLHNSIEASLRSNTLVPRPIFSQLYLEAEQQLSSLEGGSRADNEEEEEDGEGGLEPSSPPNAYQLPPPPEGCCTTDGFCQAGKDLRLVSISSEPIEVPAGFLLVGAKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLTTQPKKQKHLKYYLVRNAQGALTKGPLICWKGSEFRGRQNSTNTCSSSLFPPLESSGSLAAFPTEPVPGTNPSVPVGAQQAGPASDHPSVTTATGPAVFNGKDSPKHPQLVKSSLSALPRPSALGILPNSGPPKKRHKGWSPESKSTTDGGFIQGGGNRAKHEGTSIPCVPQAGLVGPASVTFPVVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSLARAYEQHGASTMQPISEETQLLLTVYYLVQLAADQVPLMEDLEQIFLRSWRESHLTEIRQYQQAPPQPFPPATSTAAPVTSAQLPWLAGLAASSCNDSVHVIECAYSLAEGLSEMFRLLIEGKLSKTNYVVIICACRNAAIDSCIAVTGKYQARILSESLLSPAEYQREVHYELVTGKVDSLGTFFSSLCPEGDIDILLDKFHQENQGHVSSSFTASSTKKTAVLDASGVPVCTSYHQEPRGVRPFQLAVAQKLLSHVCSIADSSTQNLDLGSFEKVDFLICIPPSEVTYQQTVFHVWHSGVLLELGLEKEPVTKQRAEQHVLKLDTEAQARFKAFLQNSFQNPHTLFVLIHDHAHWDLVSSAVHNIYSQSDPSVGLVDRLLNCREVKEAPNIVTLHVTSFPYALQTQHTLISPYNEIHWPISFSNGVDLYHESKKYFGLSEFIDSTLSGHSLPLLRYDSSFEAMVTALGKRFPRLHSAVIRTFVLVQHYAAAMMAVSGLPQMKNHTSVETLEITQNLLNSPKQCPCGHGLMVLLRVPCSPLAAVAYERLAHVRARLALEEHFEIILGHPSSGITVGKHFVKQLKMWQKIEDAEWRPQTYLELEGLPCILIFSGMDPHGESLPRSLRYCDLRLINSSCLVRTALEQELGLAAYFVSNDIPLEKGPKNEALESDGEKLSSTDEDEEAGTEGCFEAGSTSEQRGPVKRERSHSHDSASSSLSSRASGSVLYGESLAQPSGPPQGELTRSPPSCGPAEEGRAPGEIQRLRVSQGSTVISRHSPGLVPQPDSSLRTGRRSLQVPAAPSSQLSSSSGSSSTCAVPTANVLVLQASQCSMAKACRQPPIVFLPKLVYDMLLSTDSSGLPKSASLLPSPSVMWTSSFRPLLSKMMTSTEQSLYYRQWTVPRPSHMDYGNRAEGRVDSFHPRRLLLSGPPQIGKTGAYLQFLSILSRMLIRLTEVDVYDEEEINTSFREESEWRYLQLADPWPDLELFQKMPFDYIIHDPKYEDASLICSHPQTIKSEDRGMSRKPEDLYVRRQTARMRLSKYAAYNTYHHCEQCQQYMGFHPHYQLSESTLHVFAFSCSMLGEEVQLHFIIPKSKEHHFVFSQPGGQLESMRLPLVTDKSHEHIKSPTFTPTTGRHEHGLFNLYHAMDGANHLHVLVVKEYEMAIYKKYWPNHIMLVLPSIFNSAGVGAAHFLIKELCYHNLELERNRQEELGVKPQDVWPFIVIADDSCVMWNVADVDCAGERSREFSWSERNVSLKYIMLHIEASPNITHYALLGMRKWASKTRGREVQEPFSRCHVHDFIILNVDLTQNVQYNQNRFTCDDVDFNLRVHSAGLLLCRFNRFSVMKKQIAVGGHRSFHITSKVSDSSVAIVPSQYICAPDSKHTFLAAPAQLLLEKFLQYHSHRFFPLSLKNHSHPVLSVDCYLNLGPQISVCYVSSRPHSLNISCSDMVFSGLLLYLCDSFVGASFLKKFHFLKGATLCVICQDRNSLRQTVVRLELEDEWQFRLRDEFQTANAKEDRPLFFLTARHI", "length": 1954 }, "evidence": [ { "id": "A0A8C2QKT7", "url": "https://omabrowser.org/oma/group/A0A8C2QKT7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNEEEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLVGVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLTTQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFPVVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRAYEQYGASAIQPISEEMQLLLTVYYLVQLAADQVPLMEDLEQIFLRSWRESHLTEIRQYQQAPPQPFPPAPSAAAPVTSAQLPWLASLAASSCNDSVHVIECAYSLAEGLSEMFRLLVEGKLAKTNYVVIICACRSAAIDSCIAVTGKYQARILSESLLTPAEYQKEVNYELVTGKVDSLGAFFSTLCPEGDIDILLDKFHQENQGHISSSLAASSVTKAASLDVSGTPVCTSYNLEPHSIRPFQLAVAQKLLSHVCSIADSSTQNLDLGSFEKVDFLICIPPSEVTYQQTLLHVWHSGVLLELGLKKEHMTKQRVEQYVLKLDTEAQTKFKAFLQNSFQNPHTLFVLIHDHAHWDLVSSTVHNLYSQSDPSVGLVDRLLNCREVKEAPNIVTLHVTSFPYALQTQHTLISPYNEIHWPASCSNGVDLYHENKKYFGLSEFIESTLSGHSLPLLRYDSSFEAMVTALGKRFPRLHSAVIRTFVLVQHYAAALMAVSGLPQMKNYTSVETLEITQNLLNSPKQCPCGHGLMVLLRVPCSPLAVVAYERLAHVRARLALEEHFEIILGSPSSGVTVGKHFVKQLRMWQKIEDVEWRPQTYLELEGLPCILIFSGMDPHGESLPRSLRYCDLRLINSSCLVRTALEQELGLAAYFVSNEVPLEKGARNEALESDAEKLSSTDNEDEELGTEGSTSEKRSPMKRERSRSHDSASSSLSSKASGSALGGESSAQPTALPQGEHARSPQPRGPAEEGRAPGEKQRPRASQGPPSAISRHSPGPTPQPDCSLRTGQRSVQVSVTSSCSQLSSSSGSSSSSVAPAAGTWVLQASQCSLTKACRQPPIVFLPKLVYDMVVSTDSSGLPKAASLLPSPSVMWASSFRPLLSKTMTSTEQSLYYRQWTVPRPSHMDYGNRAEGRVDGFHPRRLLLSGPPQIGKTGAYLQFLSVLSRMLVRLTEVDVYDEEEININLREESDWHYLQLSDPWPDLELFKKLPFDYIIHDPKYEDASLICSHYQGIKSEDRGMSRKPEDLYVRRQTARMRLSKYAAYNTYHHCEQCHQYMGFHPRYQLYESTLHAFAFSYSMLGEEIQLHFIIPKSKEHHFVFSQPGGQLESMRLPLVTDKSHEYIKSPTFTPTTGRHEHGLFNLYHAMDGASHLHVLVVKEYEMAIYKKYWPNHIMLVLPSIFNSAGVGAAHFLIKELSYHNLELERNRQEELGIKPQDIWPFIVISDDSCVMWNVVDVNSAGERSREFSWSERNVSLKHIMQHIEAAPDIMHYALLGLRKWSSKTRASEVQEPFSRCHVHNFIILNVDLTQNVQYNQNRFLCDDVDFNLRVHSAGLLLCRFNRFSVMKKQIVVGGHRSFHITSKVSDNSAAVVPAQYICAPDSKHTFLAAPAQLLLEKFLQHHSHLFFPLSLKNHDHPVLSVDCYLNLGSQISVCYVSSRPHSLNISCSDLLFSGLLLYLCDSFVGASFLKKFHFLKGATLCVICQDRSSLRQTVVRLELEDEWQFRLRDEFQTANAREDRPLFFLTGRHI", "length": 1949 }, "evidence": [ { "id": "A0A8C2QKT7", "url": "https://omabrowser.org/oma/group/A0A8C2QKT7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKT7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1055, "end_pos": 1057, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1388, "end_pos": 1390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1679, "end_pos": 1681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1694, "end_pos": 1696, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1839, "end_pos": 1841, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1870, "end_pos": 1872, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" }, { "start_pos": 925, "end_pos": 927, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QKT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" }, { "id": "PF15782", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15782" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GREB1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 211, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QKT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" }, { "id": "PF20267", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20267" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GREB1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 1794, "end_pos": 1956, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QKT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" }, { "id": "PF20692", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20692" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GREB1-like circularly permuted SF2 helicase", "eco_id": "ECO_0000259", "start_pos": 663, "end_pos": 1384, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QKT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" }, { "id": "PF20688", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20688" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GREB1-like second", "eco_id": "ECO_0000259", "start_pos": 305, "end_pos": 607, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QKT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKT7" }, { "id": "PF20691", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20691" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TET-Associated Glycosyltransferase", "eco_id": "ECO_0000259", "start_pos": 1552, "end_pos": 1780, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1055, "end_pos": 1057 }, { "start_pos": 1388, "end_pos": 1390 }, { "start_pos": 1679, "end_pos": 1681 }, { "start_pos": 1694, "end_pos": 1696 }, { "start_pos": 1839, "end_pos": 1841 }, { "start_pos": 1870, "end_pos": 1872 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 516, "end_pos": 518 }, { "start_pos": 925, "end_pos": 927 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QKV7-1", "uniprot_ac": "A0A8C2QKV7", "uniprot_id": "A0A8C2QKV7_CRIGR", "mass": { "chemical_mass": 65292.0, "monoisotopic_mass": 65292.0 }, "refseq": { "ac": "XP_027246104", "name": "scavenger receptor class A member 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246104" }, "gene_names": [ { "name": "Scara3", "type": "recommended", "evidence": [ { "id": "A0A8C2QKV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKV7" } ] }, { "name": "Scara3", "type": "synonym", "evidence": [ { "id": "XP_027246104", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246104" } ] } ], "protein_names": [ { "name": "Scavenger receptor class A member 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QKV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKV7/entry#names_and_taxonomy" } ] }, { "name": "scavenger receptor class A member 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027246104", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246104" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246104", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246104" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKV7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKV7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Scara3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKV7", "locus": {} } ], "crossref": [ { "id": "100760010", "url": "https://www.ncbi.nlm.nih.gov/gene/100760010", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052376", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052376", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760010", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760010", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QKV7", "url": "https://www.orthodb.org/?gene=A0A8C2QKV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39082:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39082:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246104", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246104", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKV7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKVRSAGSDRDVLCITEEELAGEDEEMPSFPCTQEGRSGPRCSRCQKNLSLHTSVRILYLFLALLLVAVAVLASLVFRKVDSLSEDISLAQSIYNKKLVSMQENLQGLDPKALNNCSFCREAGQLGQEIRKLQEELEGLQKMLLAQEVQLDQTSQAHELLSTTSSQISQEMGSCSFSIHQVNQSLGLFLAQVRGWQATTAGMDTTLKDLTQECYDVRAAVHQINFTVGQTAEWIHGIQRKTDEETLTLQKMVTDWQNYTRLFGGLRSTSAKTGEMVKTIQATLGASSQRISQNSESMHDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTRYAQNRTVERFESLEGRMASHEIEIGTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSLMLGTTDLLRERFSLLSARLDFNVRNLSMIMEEMKAVDTQHGEILRNVTIIRGVPGPPGPRGLKGDAGIKGPLGNRGPKGDSGSLGPPGRQGPQGPPGEPGPVGERGPAGPRGFSGLKGSKGSFGTGGPRGQPGPKGDVGPPGPEGPPGSPGPSGPQGKPGISGKTGSPGQRGATGPKGEPGIQGPPGLPGPPGPPGNSSPY", "length": 606, "header": "tr|A0A8C2QKV7-1|A0A8C2QKV7_CRIGR Isoform 1 of Scavenger receptor class A member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scara3 PE=4 SV=1 CANONICAL=A0A8C2QKV7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKV7/entry", "sequence": { "sequence": "MKVRSAGSDRDVLCITEEELAGEDEEMPSFPCTQEGRSGPRCSRCQKNLSLHTSVRILYLFLALLLVAVAVLASLVFRKVDSLSEDISLAQSIYNKKLVSMQENLQGLDPKALNNCSFCREAGQLGQEIRKLQEELEGLQKMLLAQEVQLDQTSQAHELLSTTSSQISQEMGSCSFSIHQVNQSLGLFLAQVRGWQATTAGMDTTLKDLTQECYDVRAAVHQINFTVGQTAEWIHGIQRKTDEETLTLQKMVTDWQNYTRLFGGLRSTSAKTGEMVKTIQATLGASSQRISQNSESMHDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTRYAQNRTVERFESLEGRMASHEIEIGTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSLMLGTTDLLRERFSLLSARLDFNVRNLSMIMEEMKAVDTQHGEILRNVTIIRGVPGPPGPRGLKGDAGIKGPLGNRGPKGDSGSLGPPGRQGPQGPPGEPGPVGERGPAGPRGFSGLKGSKGSFGTGGPRGQPGPKGDVGPPGPEGPPGSPGPSGPQGKPGISGKTGSPGQRGATGPKGEPGIQGPPGLPGPPGPPGNSSPY", "length": 606, "header": "tr|A0A8C2QKV7-1|A0A8C2QKV7_CRIGR Isoform 1 of Scavenger receptor class A member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scara3 PE=4 SV=1 CANONICAL=A0A8C2QKV7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HD89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD89/entry", "sequence": { "sequence": "MKVRSAGSDRDVLCITEEELAGEDEEMPSFPCTQEGRSGPRCSRCQKNLSLHTSVRILYLFLALLLVAVAVLASLVFRKVDSLSEDISLAQSIYNKKLVSMQENLQGLDPKALNNCSFCREAGQLGQEIRKLQEELEGLQKMLLAQEVQLDQTSQAHELLSTTSSQISQEMGSCSFSIHQVNQSLGLFLAQVRGWQATTAGMDTTLKDLTQECYDVRAAVHQINFTVGQTAEWIHGIQRKTDEETLTLQKMVTDWQNYTRLFGGLRSTSAKTGEMVKTIQATLGASSQRISQNSESMHDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTRYAQNRTVERFESLEGRMASHEIEIGTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSLMLGTTDLLRERFSLLSARLDFNVRNLSMIMEEMKAVDTQHGEILRNVTIIRGQGMVNGGMERQYLEEFLESDICCCLDHSRVVITKPHLKHGETSEYLGPSIQHLHVLLPLSSFSH", "length": 521, "header": "tr|A0A9J7HD89-1|A0A9J7HD89_CRIGR Computationally mapped isoform of Scavenger receptor class A member 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Scara3 PE=4 SV=1 CANONICAL=A0A8C2QKV7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638664", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638664" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QL30", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH19orf38", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30", "locus": {} } ], "crossref": [ { "id": "100756916", "url": "https://www.ncbi.nlm.nih.gov/gene/100756916", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040438", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040438", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756916", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756916", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NFLGANF", "url": "https://omabrowser.org/oma/group/NFLGANF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QL30", "url": "https://www.orthodb.org/?gene=A0A8C2QL30", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36859", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36859", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36859:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36859:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17737", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17737", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007638664", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638664", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QL30", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QL30-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGREMPWTILLFASGSLAIPAPSIFLVPPYPNSQDDPIFISCTAPEDFLGANFTLFRGREVAQLLQAPSDQPGVTFNVTSGGSEAAGGIFRCQYGVIGEHSQPQLSDLSQPVQISFPVPTWIMVLSLSLAGAVLLLTGLVAVAVVVRKAKIKNLQKQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDLVATLDMHPCNSGPQKTPTSTPSSPELPEFSTFRACQ", "length": 228, "header": "tr|A0A8C2QL30-1|A0A8C2QL30_CRIGR Isoform 1 of Protein HIDE1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf38 PE=4 SV=1 CANONICAL=A0A8C2QL30-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QL30-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30/entry", "sequence": { "sequence": "MGREMPWTILLFASGSLAIPAPSIFLVPPYPNSQDDPIFISCTAPEDFLGANFTLFRGREVAQLLQAPSDQPGVTFNVTSGGSEAAGGIFRCQYGVIGEHSQPQLSDLSQPVQISFPVPTWIMVLSLSLAGAVLLLTGLVAVAVVVRKAKIKNLQKQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDLVATLDMHPCNSGPQKTPTSTPSSPELPEFSTFRACQ", "length": 228, "header": "tr|A0A8C2QL30-1|A0A8C2QL30_CRIGR Isoform 1 of Protein HIDE1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf38 PE=4 SV=1 CANONICAL=A0A8C2QL30-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 212, "start_aa": "Thr", "end_pos": 212, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr212", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QL30", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QL30", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756916", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756916", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1VG55-1", "protein_name": "Chromosome 2 C19orf38 homolog", "gene_name": "C19orf38", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPWTVLLFAAGSLAIPAPSIMLVPPHPSSQEDPIHISCVAPQEFPGANFTLYQGGQVVQQEQAPVDQLKVTFNLSGGSQEAPGRPFYCQYGVLGEHRQPQLSDLSEPMHISFPVPTWILALSLSLAGAFLLLAGLVIIAMVVRKVKLKKLQKKRERESCWAQVNFPATDMSFDNSLFTISKMTSEEDAATVDAPSGSNKTPDNSGPWKRTNSTSSSPEPPEFSTFRAC", "length": 228 }, "evidence": [ { "id": "A0A8C2QL30", "url": "https://omabrowser.org/oma/group/A0A8C2QL30/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A8MVS5-1", "protein_name": "Protein HIDE1", "gene_name": "HIDE1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPWTILLFAAGSLAIPAPSIRLVPPYPSSQEDPIHIACMAPGNFPGANFTLYRGGQVVQLLQAPTDQRGVTFNLSGGSSKAPGGPFHCQYGVLGELNQSQLSDLSEPVNVSFPVPTWILVLSLSLAGALFLLAGLVAVALVVRKVKLRNLQKKRDRESCWAQINFDSTDMSFDNSLFTVSAKTMPEEDPATLDDHSGTTATPSNSRTRKRPTSTSSSPETPEFSTFRACQ", "length": 230 }, "evidence": [ { "id": "A0A8C2QL30", "url": "https://omabrowser.org/oma/group/A0A8C2QL30/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZMI7-1", "protein_name": "Similar to human chromosome 19 open reading frame 38", "gene_name": "C8h19orf38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGGEMLSQTYMGGEMPWTILLFASGSLAIPAPSIFLVPPFPSSREDPIYLSCTAPKDILGANFTLFRGGEAVQLLQAPSDQHSVTFNVTGSGSGGSNEAAGGNFRCQYGVLGEHSEPQLSDFSQEVQVSFPVPTWILALSLSLAGAVLLSGLVVIAVLVRKAKAKNLQMQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDSMVTLDSGPRKRPTSASFSPEPPEFSTFRACQ", "length": 236 }, "evidence": [ { "id": "A0A8C2QL30", "url": "https://omabrowser.org/oma/group/A0A8C2QL30/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BKF5-1", "protein_name": "Chromosome 7 C19orf38 homolog", "gene_name": "C7H19orf38", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPWIVLLFAAGSLAIPAPSIMLVPPHPSSKEDPIHISCMAPRGFPGANFTLYQDGEVVELLKAPKDQLRVIFNLSGGSREVRGGPFCCQYSVLGENRQPQLSNLSEPVHVSFPVPTWILALSLSLAGAALLLAGLVIIALIIRKVKVKNLNKRRERESCWVNIATTDMSFDNSLFTIMKMTSEEDAANLDAPSGSTETPGPRKRPTSTSSSPEPPEFSTFRAC", "length": 223 }, "evidence": [ { "id": "A0A8C2QL30", "url": "https://omabrowser.org/oma/group/A0A8C2QL30/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q75VT8-1", "protein_name": "Protein HIDE1", "gene_name": "Hide1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPWTILLFASGSLAIPAPSISLVPPYPSSHEDPIYISCTAPGDILGANFTLFRGGEVVQLLQAPSDRPDVTFNVTGGGSGGGGEAAGGNFCCQYGVMGEHSQPQLSDFSQQVQVSFPVPTWILALSLSLAGAVLFSGLVAITVLVRKAKAKNLQKQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDSVATLDSGPRKRPTSASSSPEPPEFSTFRACQ", "length": 222 }, "evidence": [ { "id": "A0A8C2QL30", "url": "https://omabrowser.org/oma/group/A0A8C2QL30/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL30" }, { "id": "PF17737", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17737" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C19orf38 Ig", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 116, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 212 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QL43-1", "uniprot_ac": "A0A8C2QL43", "uniprot_id": "A0A8C2QL43_CRIGR", "mass": { "chemical_mass": 17424.0, "monoisotopic_mass": 17424.0 }, "refseq": { "ac": "XP_003503382", "name": "neuromedin-S", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503382" }, "gene_names": [ { "name": "Nms", "type": "recommended", "evidence": [ { "id": "A0A8C2QL43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL43" } ] }, { "name": "Nms", "type": "synonym", "evidence": [ { "id": "XP_003503382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503382" } ] } ], "protein_names": [ { "name": "Neuromedin-S", "type": "recommended", "evidence": [ { "id": "A0A8C2QL43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL43/entry#names_and_taxonomy" } ] }, { "name": "neuromedin-S", "type": "synonym", "evidence": [ { "id": "XP_003503382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503382" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613959.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503382" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QL43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL43" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nms", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL43", "locus": {} } ], "crossref": [ { "id": "100757218", "url": "https://www.ncbi.nlm.nih.gov/gene/100757218", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757218", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757218", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FCMLPIP", "url": "https://omabrowser.org/oma/group/FCMLPIP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QL43", "url": "https://www.orthodb.org/?gene=A0A8C2QL43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32414", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32414", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32414:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32414:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003503382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503382", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QL43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QL43-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKHLLPQFPSILIIYCFCLLQIPSSGVSQPFADSPDGLDIMGLEQLVYCLNQWKTLSNQPKENQDIYKRFLFHYSRTQKPAHPVTSEFAPVHPLMRLAAKLAGRRMKRLQYPASRTATVDFPKKDPTSTLRQPFFLFRPRNGRYIDNKIQ", "length": 150, "header": "tr|A0A8C2QL43-1|A0A8C2QL43_CRIGR Isoform 1 of Neuromedin-S OS=Cricetulus griseus OX=10029 GN=Nms PE=3 SV=1 CANONICAL=A0A8C2QL43-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QL43-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QL43/entry", "sequence": { "sequence": "MKHLLPQFPSILIIYCFCLLQIPSSGVSQPFADSPDGLDIMGLEQLVYCLNQWKTLSNQPKENQDIYKRFLFHYSRTQKPAHPVTSEFAPVHPLMRLAAKLAGRRMKRLQYPASRTATVDFPKKDPTSTLRQPFFLFRPRNGRYIDNKIQ", "length": 150, "header": "tr|A0A8C2QL43-1|A0A8C2QL43_CRIGR Isoform 1 of Neuromedin-S OS=Cricetulus griseus OX=10029 GN=Nms PE=3 SV=1 CANONICAL=A0A8C2QL43-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "name": "nascent polypeptide-associated complex subunit alpha", "type": "synonym", "evidence": [ { "id": "XP_003506223", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506223" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614217.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506223", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506223" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762735", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0", "locus": {} } ], "crossref": [ { "id": "cd14415", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14415", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762735", "url": "https://www.ncbi.nlm.nih.gov/gene/100762735", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762735", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762735", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SQKMIFA", "url": "https://omabrowser.org/oma/group/SQKMIFA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QLF0", "url": "https://www.orthodb.org/?gene=A0A8C2QLF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21713", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21713", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01849", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01849", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506223", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506223", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QLF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QLF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQTTTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM", "length": 215, "header": "tr|A0A8C2QLF0-1|A0A8C2QLF0_CRIGR Isoform 1 of Nascent polypeptide-associated complex subunit alpha OS=Cricetulus griseus OX=10029 GN=LOC100762735 PE=4 SV=1 CANONICAL=A0A8C2QLF0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QLF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0/entry", "sequence": { "sequence": "MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQTTTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM", "length": 215, "header": "tr|A0A8C2QLF0-1|A0A8C2QLF0_CRIGR Isoform 1 of Nascent polypeptide-associated complex subunit alpha OS=Cricetulus griseus OX=10029 GN=LOC100762735 PE=4 SV=1 CANONICAL=A0A8C2QLF0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://omabrowser.org/oma/group/A0A8C2QLF0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P38879-1", "protein_name": "Nascent polypeptide-associated complex subunit alpha", "gene_name": "EGD2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSAIPENANVTVLNKNEKKARELIGKLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRSAGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLSK", "length": 174 }, "evidence": [ { "id": "A0A8C2QLF0", "url": "https://omabrowser.org/oma/group/A0A8C2QLF0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54U07-1", "protein_name": "Nascent polypeptide-associated complex subunit alpha", "gene_name": "nacA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MADSDVKKVTKGEKKTREAMKKLGLAPVSDIFRVTIKQKEGVLVVVAEPEVYASPSGETYVVFGDHSFDDIASRLQKAVPKANVDDIVKAAMPAPTAVKESEESEEIVAQAVDSFDYKGVNPKDVEVVMKETKASREKVVETLIATKNDLVSAVLELTTN", "length": 160 }, "evidence": [ { "id": "A0A8C2QLF0", "url": "https://omabrowser.org/oma/group/A0A8C2QLF0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5E9A1-1", "protein_name": "Nascent polypeptide-associated complex subunit alpha", "gene_name": "NACA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPGEATDTVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM", "length": 215 }, "evidence": [ { "id": "A0A8C2QLF0", "url": "https://omabrowser.org/oma/group/A0A8C2QLF0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q94518-1", "protein_name": "Nascent polypeptide-associated complex subunit alpha", "gene_name": "Nacalpha", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPELTEIKSEAAPSTSAEAKPEDVRVEDDGSDSDSDGGMPGLEEAVAATTQLGGGATGLPIDLVSKAKQSRGEKKARKIMLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEAAGAADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKALKNNNNDIVNAIMELTML", "length": 217 }, "evidence": [ { "id": "A0A8C2QLF0", "url": "https://omabrowser.org/oma/group/A0A8C2QLF0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9H009-1", "protein_name": "Nascent polypeptide-associated complex subunit alpha-2", "gene_name": "NACA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPGEATETVPATEQELPQSQAETGSGTASDSGESVPGIEEQDSTQTTTQKAWLVAAAEIDEEPVGKAKQSRSEKRARKAMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAYIVFGEAKIQDLSQQAQLAAAEKFRVQGEAVGNIQENTQTPTVQEESEEEEVDETGVEVKDVKLVMSQANVSRAKAVRALKNNSNDIVNAIMELTV", "length": 215 }, "evidence": [ { "id": "A0A8C2QLF0", "url": "https://omabrowser.org/oma/group/A0A8C2QLF0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LHG9-1", "protein_name": "Nascent polypeptide-associated complex subunit alpha-like protein 1", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTTEEKEILAAKLEEQKIDLDKPEVEDDDDNEDDDSDDDDKDDDEADGLDGEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELTT", "length": 203 }, "evidence": [ { "id": "A0A8C2QLF0", "url": "https://omabrowser.org/oma/group/A0A8C2QLF0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0" } ], "pmid": "" }, { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "myoblast migration", "id": "GO:0051451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051451", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nascent polypeptide-associated complex", "id": "GO:0005854", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005854", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QLF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLF0" }, { "id": "PS51151", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51151" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAC-A/B", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 135, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 201, "end_pos": 203 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QLW7-1", "uniprot_ac": "A0A8C2QLW7", "uniprot_id": "A0A8C2QLW7_CRIGR", "mass": { "chemical_mass": 33633.0, "monoisotopic_mass": 33633.0 }, "refseq": { "ac": "XP_003503333", "name": "UPF0600 protein C5orf51 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503333" }, "gene_names": [ { "name": "C2H5orf51", "type": "recommended", "evidence": [ { "id": "A0A8C2QLW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7" } ] }, { "name": "C2H5orf51", "type": "synonym", "evidence": [ { "id": "XP_003503333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503333" } ] } ], "protein_names": [ { "name": "UPF0600 protein C5orf51 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003503333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503333" }, { "id": "A0A8C2QLW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613957.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503333", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503333" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLW7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C2H5orf51", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7", "locus": {} } ], "crossref": [ { "id": "100765818", "url": "https://www.ncbi.nlm.nih.gov/gene/100765818", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765818", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765818", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEGKEHP", "url": "https://omabrowser.org/oma/group/NEGKEHP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QLW7", "url": "https://www.orthodb.org/?gene=A0A8C2QLW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28494", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28494", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28494:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28494:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503333", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503333", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QLW7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QLW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAVSGVVRRVEELGDLAQAHIQHLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSPQKVKELLSFLSEPEILVKENNMHPKLCDLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSNLLQKYLVDGINYLLQMLNHRCPIQLNEGVSFQDLDTAKLLSTGIFSDIHVLAMMYSGEMCYWGLKHCTDRQSENHEVNTDVFGASCTTYKEPLDFREVGEKILKKYVSVCEGPLKAQEWNTTNAKQILSFFEQHCS", "length": 294, "header": "tr|A0A8C2QLW7-1|A0A8C2QLW7_CRIGR Isoform 1 of UPF0600 protein C5orf51 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C2H5orf51 PE=4 SV=1 CANONICAL=A0A8C2QLW7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QLW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7/entry", "sequence": { "sequence": "MAAAVSGVVRRVEELGDLAQAHIQHLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSPQKVKELLSFLSEPEILVKENNMHPKLCDLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSNLLQKYLVDGINYLLQMLNHRCPIQLNEGVSFQDLDTAKLLSTGIFSDIHVLAMMYSGEMCYWGLKHCTDRQSENHEVNTDVFGASCTTYKEPLDFREVGEKILKKYVSVCEGPLKAQEWNTTNAKQILSFFEQHCS", "length": 294, "header": "tr|A0A8C2QLW7-1|A0A8C2QLW7_CRIGR Isoform 1 of UPF0600 protein C5orf51 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C2H5orf51 PE=4 SV=1 CANONICAL=A0A8C2QLW7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLW7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QLW7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLW7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765818", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765818", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JVL5-1", "protein_name": "RAB7A interacting MON1-CCZ1 complex subunit 1", "gene_name": "Rimoc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVGFRLVERRRRERGVPLHHTGPSQHRIVGGRGPLGGTQYPERPLRAGAVVARSLCLRPPSGWAPPPFRHPGRQVISCPRGHVDRAGAPELAMAAAVSGVVRRVEELGDLAQAHIQHLSEAAGEDDHFLIRASAALEKLKLLCGEEEECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDCSPQKVKELLAFLSEPEILAKENNMHPKLCDLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSNLLQKYLVDGINYLLQMLNYRCPVQLNEGVSFQDLDTAKLLSTGIFSDIHVLAMMYSGEMCYWGVKHCTDHQSGNHEVDTDVFGTSCTTHREPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILGFFQQRCS", "length": 386 }, "evidence": [ { "id": "A0A8C2QLW7", "url": "https://omabrowser.org/oma/group/A0A8C2QLW7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NDU8-1", "protein_name": "RAB7A-interacting MON1-CCZ1 complex subunit 1", "gene_name": "RIMOC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHCNLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCPIQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVSGAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN", "length": 294 }, "evidence": [ { "id": "A0A8C2QLW7", "url": "https://omabrowser.org/oma/group/A0A8C2QLW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A8Y5U1-1", "protein_name": "RAB7A-interacting MON1-CCZ1 complex subunit 1", "gene_name": "rimoc1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADDYRRSVELERRIFELDNKCATLRTEKPDDDYLQNASSILDKLKTYYRHGGESSSLPKLLQDYTQVVLDITFYEENKLVDQEFPEDSSPFKIQQLLQDLTEPEVLAGRLVPAQEVQSVLGLELLECLYWRRGALLYMYCHTLHQRKQWIKKNKATFLKCLQEGVRYLMRMLQVRNSVKLNDGVVFHDSATANFLAEGIFSDTHLLTMMYIGEMCFWAVKYEDCSMDTTERKEDRLHFRDIGTQILHKYVLACEGPLQGQGWNTENAKEILSILQ", "length": 276 }, "evidence": [ { "id": "A0A8C2QLW7", "url": "https://omabrowser.org/oma/group/A0A8C2QLW7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BBG4-1", "protein_name": "RAB7A interacting MON1-CCZ1 complex subunit 1", "gene_name": "RIMOC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAASSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLQCGEDKECSTPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSQKVKELINFLSEPEILVKENNMHPKHCDLLGDELLECLSWRRGALLYMYCHSLTKRRDWLTRKSSLLKKYLVDGISYLLQMLNFRCPIQLNEGASFQDLDTAKLLSEGIFSDIHLLAMMYSGEMCYWGLKHCADQQPENHEMDIGVSGASYAAHKEPLDFREVGEKILKKYVFVCEGPLKEQEWNTTNAKQILNFFQHHTN", "length": 293 }, "evidence": [ { "id": "A0A8C2QLW7", "url": "https://omabrowser.org/oma/group/A0A8C2QLW7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BR90-1", "protein_name": "RAB7A-interacting MON1-CCZ1 complex subunit 1", "gene_name": "Rimoc1", "tax_id": 10090, "organism": "Mus musculus", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QM55-1", "uniprot_ac": "A0A8C2QM55", "uniprot_id": "A0A8C2QM55_CRIGR", "mass": { "chemical_mass": 14757.0, "monoisotopic_mass": 14757.0 }, "refseq": { "ac": "XP_007627564", "name": "testis-expressed protein 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627564" }, "gene_names": [ { "name": "Tex12", "type": "recommended", "evidence": [ { "id": "A0A8C2QM55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55" } ] }, { "name": "Tex12", "type": "synonym", "evidence": [ { "id": "XP_007627564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627564" } ] } ], "protein_names": [ { "name": "Testis-expressed protein 12", "type": "synonym", "evidence": [ { "id": "A0A8C2QM55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55/entry#names_and_taxonomy" } ] }, { "name": "testis-expressed protein 12", "type": "synonym", "evidence": [ { "id": "XP_007627564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627564" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613694.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007627564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627564" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM55", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tex12", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55", "locus": {} } ], "crossref": [ { "id": "100769839", "url": "https://www.ncbi.nlm.nih.gov/gene/100769839", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029193", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029193", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769839", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769839", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RFTMIAN", "url": "https://omabrowser.org/oma/group/RFTMIAN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QM55", "url": "https://www.orthodb.org/?gene=A0A8C2QM55", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37349", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37349", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37349:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37349:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15219", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15219", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007627564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627564", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QM55", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QM55-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLCFQSIMANHLVKPDSRNCKRSRELEPQVSDSSQVPSLGKSDSSFSECSGLLYKEDALEKDLSDMSKEINLMLSTYAKILSERAAVDASYIDELDGLFKEANIIENFLVQKREFLKQRFTVITNTLHK", "length": 130, "header": "tr|A0A8C2QM55-1|A0A8C2QM55_CRIGR Isoform 1 of Testis-expressed protein 12 OS=Cricetulus griseus OX=10029 GN=Tex12 PE=4 SV=1 CANONICAL=A0A8C2QM55-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QM55-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55/entry", "sequence": { "sequence": "MSLCFQSIMANHLVKPDSRNCKRSRELEPQVSDSSQVPSLGKSDSSFSECSGLLYKEDALEKDLSDMSKEINLMLSTYAKILSERAAVDASYIDELDGLFKEANIIENFLVQKREFLKQRFTVITNTLHK", "length": 130, "header": "tr|A0A8C2QM55-1|A0A8C2QM55_CRIGR Isoform 1 of Testis-expressed protein 12 OS=Cricetulus griseus OX=10029 GN=Tex12 PE=4 SV=1 CANONICAL=A0A8C2QM55-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM55", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"Human" }, { "uniprot_canonical_ac": "Q9CR81-1", "protein_name": "Testis-expressed protein 12", "gene_name": "Tex12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMANHLVKPDSRNCKRARELEPQVSDSPQVSSLGKSESSLSEASGLFYKEEALEKDLSDMSKEINLMLSTYAKILSERAAVDASYIDEIDGLFKEANIIENFLVQKREFLKQRFTVITNTLHK", "length": 123 }, "evidence": [ { "id": "A0A8C2QM55", "url": "https://omabrowser.org/oma/group/A0A8C2QM55/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "central element", "id": "GO:0000801", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000801", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM55", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM55" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM55", "url": 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MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304819", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304819" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QME8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QME8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrtm2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QME8", "locus": {} } ], "crossref": [ { "id": "100752413", "url": "https://www.ncbi.nlm.nih.gov/gene/100752413", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752413", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752413", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QME8", "url": "https://www.orthodb.org/?gene=A0A8C2QME8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF175", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF175", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304819", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304819", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QME8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QME8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QME8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QME8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAPGSGPEQRSKLALQWRQVAWITCWIALCAVEVLPACPFSCICDSRSLEVDCSGLGLTTVPPDVPAATQSLLLLNNKLSALPSWAFANLSNLQRLDLSNNFLDQLPRSIFQDLVNLTELQLRNNSIRTLDRDLLQHAPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQSLDRLTFEPLASLQLLQVGDNPWECDCNLREFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDENNSAGMDAPGPPCTKASPEPAKPKPGPEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA", "length": 370, "header": "tr|A0A8C2QME8-1|A0A8C2QME8_CRIGR Isoform 1 of Leucine-rich repeat and transmembrane domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Lrtm2 PE=4 SV=1 CANONICAL=A0A8C2QME8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QME8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QME8/entry", "sequence": { "sequence": "MLAPGSGPEQRSKLALQWRQVAWITCWIALCAVEVLPACPFSCICDSRSLEVDCSGLGLTTVPPDVPAATQSLLLLNNKLSALPSWAFANLSNLQRLDLSNNFLDQLPRSIFQDLVNLTELQLRNNSIRTLDRDLLQHAPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQSLDRLTFEPLASLQLLQVGDNPWECDCNLREFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDENNSAGMDAPGPPCTKASPEPAKPKPGPEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA", "length": 370, "header": "tr|A0A8C2QME8-1|A0A8C2QME8_CRIGR Isoform 1 of Leucine-rich repeat and transmembrane domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Lrtm2 PE=4 SV=1 CANONICAL=A0A8C2QME8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QME8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QME8" }, { "id": "SM00082", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRCT", "eco_id": "ECO_0000259", "start_pos": 198, "end_pos": 251, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QME8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QME8" }, { "id": "SM00013", "database": "SMART", "url": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QMK1-1", "uniprot_ac": "A0A8C2QMK1", "uniprot_id": "A0A8C2QMK1_CRIGR", "mass": { "chemical_mass": 29786.0, "monoisotopic_mass": 29786.0 }, "refseq": { "ac": "XP_003502607", "name": "R3H domain-containing protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502607" }, "gene_names": [ { "name": "R3hdm4", "type": "recommended", "evidence": [ { "id": "A0A8C2QMK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1" } ] }, { "name": "R3hdm4", "type": "synonym", "evidence": [ { "id": "XP_003502607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502607" } ] } ], "protein_names": [ { "name": "R3H domain-containing protein 4", "type": "synonym", "evidence": [ { "id": "XP_003502607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502607" }, { "id": "A0A8C2QMK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613904.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003502607.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502607", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502607" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "R3hdm4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1", "locus": {} } ], "crossref": [ { "id": "cd02325", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02325", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763874", "url": "https://www.ncbi.nlm.nih.gov/gene/100763874", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763874", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763874", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NATYMEV", "url": "https://omabrowser.org/oma/group/NATYMEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QMK1", "url": "https://www.orthodb.org/?gene=A0A8C2QMK1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32019", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32019", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32019:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32019:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13902", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13902", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502607", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502607", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QMK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVALDDPDGGPEATPGAEARLPLPGCLPTLGGSQVKRVSASRRKQHFINQAVRNSDLVPKAKGRKSLQRLENTRYLLTLLETAGGPPGLEDGDLTPPAAPGIFAEACSNATYVEVWNDFMNRSGEEQERVLRYLEDEGQGKRRPGRGPGRGEDRRREDPAFTPHECFRRISRRLRSVLKRSRIPMETLESWEERLLAFFSVSPQAVYTAMLDNSFERLLLHAVCQYMDLISASADLEGRRQMKVSNRHLDFLPPELLLSAYLDQQ", "length": 265, "header": "tr|A0A8C2QMK1-1|A0A8C2QMK1_CRIGR Isoform 1 of R3H domain-containing protein 4 OS=Cricetulus griseus OX=10029 GN=R3hdm4 PE=4 SV=1 CANONICAL=A0A8C2QMK1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QMK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1/entry", "sequence": { "sequence": "MVALDDPDGGPEATPGAEARLPLPGCLPTLGGSQVKRVSASRRKQHFINQAVRNSDLVPKAKGRKSLQRLENTRYLLTLLETAGGPPGLEDGDLTPPAAPGIFAEACSNATYVEVWNDFMNRSGEEQERVLRYLEDEGQGKRRPGRGPGRGEDRRREDPAFTPHECFRRISRRLRSVLKRSRIPMETLESWEERLLAFFSVSPQAVYTAMLDNSFERLLLHAVCQYMDLISASADLEGRRQMKVSNRHLDFLPPELLLSAYLDQQ", "length": 265, "header": "tr|A0A8C2QMK1-1|A0A8C2QMK1_CRIGR Isoform 1 of R3H domain-containing protein 4 OS=Cricetulus griseus OX=10029 GN=R3hdm4 PE=4 SV=1 CANONICAL=A0A8C2QMK1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 14, "start_aa": "Thr", "end_pos": 14, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr14", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763874", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763874", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AJ77-1", "protein_name": "R3H domain containing 4", "gene_name": "R3HDM4", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVALENPEGGPEVAAAAAGVSPGGRRTLPLPGCLPALASSQVKRLSASKRKQHFINQAVRNSDLVPKAKGRKSLQRLENTQYLLTLLETEGGTPGLEDGDLAPPAAPGIFAEACSNETYIEVWNDFMNRSGEEQERVLRYLEDEGKSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAILKRSRIPMETLETWEERLLRFFSVSPQAVYTAMLDNSFERLLLHAVCQYMDLISASADLEGKRQMKVSNRHLDFLPPGLLLSAYLEQRS", "length": 272 }, "evidence": [ { "id": "A0A8C2QMK1", "url": "https://omabrowser.org/oma/group/A0A8C2QMK1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q2KIL7-1", "protein_name": "R3H domain-containing protein 4", "gene_name": "R3HDM4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVVLENPEAGPEEAAAAARVVPGGRRTLPLPGCLPALASSQVKRLSASRRKQHFINQAVRNSDLVPKAKGRKSLQRLENTQYLLTLLETDGATPGPEDGDLAPPAAPGIFAEACSNETYVEIWNDFMNRSGEEQERVLRYLEDEGKSKARRRGPTRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVSPQAVYTAMLDNSFERLLLHAICQYMDLISASADLEGKRQMKVSNRHLDFLPPGLLLSAYLEQRS", "length": 272 }, "evidence": [ { "id": "A0A8C2QMK1", "url": "https://omabrowser.org/oma/group/A0A8C2QMK1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4VBF2-1", "protein_name": "R3H domain-containing protein 4", "gene_name": "R3hdm4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVALDNSEGGPEATPSGETRLSLPGCLPPLSGSQVKRVSASRRKQHFINQAVRNSDLVPRAKGRKSLQRLENTQYLLTLLETAGGPPGVEDGDLTPAAPGIFAEACSNATYVEVWNDFMNRSGEEQERVLRYLEDESQGKRRRGPGRGEDRRREDPVFTPHECFRRISRRLRSVLKRSRIPMETLESWEERLLAFFSVSPQAVYTAMLDNSYERLLLHAVCQYMDLISASADLEGRRQMKVSNRHLDFLPPELLLSAYLDQQ", "length": 262 }, "evidence": [ { "id": "A0A8C2QMK1", "url": "https://omabrowser.org/oma/group/A0A8C2QMK1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96D70-1", "protein_name": "R3H domain-containing protein 4", "gene_name": "R3HDM4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDLVPKAKGRKSLQRLENTQYLLTLLETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVSPQAVYTAMLDNSFERLLLHAVCQYMDLISASADLEGKRQMKVSNRHLDFLPPGLLLSAYLEQHS", "length": 268 }, "evidence": [ { "id": "A0A8C2QMK1", "url": "https://omabrowser.org/oma/group/A0A8C2QMK1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QMK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMK1" }, { "id": "PS51061", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "R3H", "eco_id": "ECO_0000259", "start_pos": 185, "end_pos": 248, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 14 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 121, "end_pos": 123 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QMM4-1", "uniprot_ac": "A0A8C2QMM4", "uniprot_id": "A0A8C2QMM4_CRIGR", "mass": { "chemical_mass": 27648.0, "monoisotopic_mass": 27648.0 }, "refseq": { "ac": "XP_003502093", "name": "mast cell protease 8-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502093" }, "gene_names": [ { "name": "LOC100755462", "type": "recommended", "evidence": [ { "id": "A0A8C2QMM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMM4" } ] }, { "name": "LOC100755462", "type": "synonym", "evidence": [ { "id": "XP_003502093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502093" } ] } ], "protein_names": [ { "name": "Mast cell protease 8-like", "type": "synonym", "evidence": [ { "id": "A0A8C2QMM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMM4/entry#names_and_taxonomy" } ] }, { "name": "mast cell protease 8-like", "type": "synonym", "evidence": [ { "id": "XP_003502093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502093" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613875.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502093" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QMM4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMM4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755462", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMM4", "locus": {} } ], "crossref": [ { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755462", "url": "https://www.ncbi.nlm.nih.gov/gene/100755462", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755462", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755462", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PRIDPYN", "url": "https://omabrowser.org/oma/group/PRIDPYN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QMM4", "url": "https://www.orthodb.org/?gene=A0A8C2QMM4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QMM4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QMM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLLLSLLVAVLPVSTEGGEIMWGTEAKPHSHPYMAFIRYYDIKSNLKRCGGFLVEKDVVITAAQCGGRNISVTLGVHNIKELKNTQPIPVLKVIRHEDYNSEKMVNDIMLLKLKHKAQLNKAVKTIALPKSQEWVKPKQVCTVAGWGKLAGCTLPDKLQEVKLEVQESDVCRKMYKSYDNSTQLCVGNPKEKKATADGDFGGPFVCNGVAQGIVSQHHCTGDLPEVFTRISSFIPWIQKKMKLLQQP", "length": 248, "header": "tr|A0A8C2QMM4-1|A0A8C2QMM4_CRIGR Isoform 1 of Mast cell protease 8-like OS=Cricetulus griseus OX=10029 GN=LOC100755462 PE=4 SV=1 CANONICAL=A0A8C2QMM4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QMM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QMM4/entry", "sequence": { "sequence": "MFLLLSLLVAVLPVSTEGGEIMWGTEAKPHSHPYMAFIRYYDIKSNLKRCGGFLVEKDVVITAAQCGGRNISVTLGVHNIKELKNTQPIPVLKVIRHEDYNSEKMVNDIMLLKLKHKAQLNKAVKTIALPKSQEWVKPKQVCTVAGWGKLAGCTLPDKLQEVKLEVQESDVCRKMYKSYDNSTQLCVGNPKEKKATADGDFGGPFVCNGVAQGIVSQHHCTGDLPEVFTRISSFIPWIQKKMKLLQQP", "length": 248, "header": "tr|A0A8C2QMM4-1|A0A8C2QMM4_CRIGR Isoform 1 of Mast cell protease 8-like OS=Cricetulus griseus OX=10029 GN=LOC100755462 PE=4 SV=1 CANONICAL=A0A8C2QMM4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027255707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255707" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255707", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255707" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QN03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN03" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Szrd1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN03", "locus": {} } ], "crossref": [ { "id": "100774832", "url": "https://www.ncbi.nlm.nih.gov/gene/100774832", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024771", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039228", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039228", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774832", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774832", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QN03", "url": "https://www.orthodb.org/?gene=A0A8C2QN03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31796", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31796", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31796:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31796:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255707", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255707", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QN03", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QN03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDEEVAESWEEAADSGEIDRRLEKKLKITQKERKSKSPPKVPIVIQDDSLPTGPPPQIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRILGSASPEEEQEKPILDRPTRISQPEDSRQPSNVIRQPLGPDGSQGFKQRR", "length": 151, "header": "tr|A0A8C2QN03-1|A0A8C2QN03_CRIGR Isoform 1 of SUZ RNA-binding domain-containing OS=Cricetulus griseus OX=10029 GN=Szrd1 PE=3 SV=1 CANONICAL=A0A8C2QN03-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QN03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QN03/entry", "sequence": { "sequence": "MEDEEVAESWEEAADSGEIDRRLEKKLKITQKERKSKSPPKVPIVIQDDSLPTGPPPQIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRILGSASPEEEQEKPILDRPTRISQPEDSRQPSNVIRQPLGPDGSQGFKQRR", "length": 151, "header": "tr|A0A8C2QN03-1|A0A8C2QN03_CRIGR Isoform 1 of SUZ RNA-binding domain-containing OS=Cricetulus griseus OX=10029 GN=Szrd1 PE=3 SV=1 CANONICAL=A0A8C2QN03-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QNF6-1", "uniprot_ac": "A0A8C2QNF6", "uniprot_id": "A0A8C2QNF6_CRIGR", "mass": { "chemical_mass": 110110.0, "monoisotopic_mass": 110110.0 }, "refseq": { "ac": "XP_027257753", "name": "epithelial cell-transforming sequence 2 oncogene-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257753" }, "gene_names": [ { "name": "Ect2l", "type": "recommended", "evidence": [ { "id": "A0A8C2QNF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6" } ] }, { "name": "Ect2l", "type": "synonym", "evidence": [ { "id": "XP_027257753", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257753" } ] } ], "protein_names": [ { "name": "Epithelial cell-transforming sequence 2 oncogene-like", "type": "synonym", "evidence": [ { "id": "A0A8C2QNF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6/entry#names_and_taxonomy" } ] }, { "name": "epithelial cell-transforming sequence 2 oncogene-like", "type": "synonym", "evidence": [ { "id": "XP_027257753", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257753" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257753", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257753" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNF6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ect2l", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22173", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22173", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770493", "url": "https://www.ncbi.nlm.nih.gov/gene/100770493", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052805", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052805", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770493", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770493", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GIDIFCP", "url": "https://omabrowser.org/oma/group/GIDIFCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QNF6", "url": "https://www.orthodb.org/?gene=A0A8C2QNF6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46857:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46857:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14252", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14252", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257753", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257753", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QNF6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QNF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFGNFPQKSLEVESFHTRFSTWTPVNNQPLNRQLFQERVTLISHWFDLWTNKQRQEFLFTILSQCSKSQLRFIQGWFSERKQVARVDFSTVLPRSISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCTKFGWFLPYTPAQNEYGAWKQHYIACVSSLDWLTPREAAAVYGTLNEPKTEDEEFKERQREKCLRKVIWEKIAFRKKELFKARPPWLSGTRCTGCLKSMSLPSGPRMWRDGAGFYEALERQLVLASLDALPKRSNLSGSHPYPLLLKKNHHGVGRTDDSSSCALQPHVILISSKIPAYEMVVESVKVGVVAMPYEHSGMTLEGLLHLTDRALQGQKARRLGIFSGGNSREIDLLQGYKICIKNLLCPEVRDFWEKLGSCVATEEEGGRVDFFVPLGASEAGIEVLSQLSQLTGTFFSAPTGIATGSYQHILSDWLGPQQDRPSPSDYFSESKLQAWTSFTDSLEDTLKSVRKELHPLFKNLQKSISGRIIGQFMFDTLSMASILNNQDTAQALADGLMELSREGSDKPLEFLSYFLLRKSSKKREGLEGNDILLECDAKVTSDPLMKERSAIEGNSQDTKSSPSQRDLNMEVLLKLERKLQMDSVEKRTQVVRELLQSERQYVQMLGIVRDVYTRPLRAALSSNRAILSASNIHIIFSDTLRILNLNREFLDNLRDRLQEWSPVQCVGEIFIKFGRQLNTYTNFFNNYPVVLKTIEKCREMTPAFRAFLKRHDKTIVTKMLSLPELLLYPSRRFEEYIHLLYALRLHTPTGHTDRGDLTTAIDQIKKYKDYIDQIKENIKMREQLSDVQTIISGCPTLSEVNRYLIKIQDVVQLHCCDETMDFSLRLYEQIRDLSLFLFNDVLLITSRGTSHTPFERTSKTTYQFIASMVLPSMLIEDIPDSKYIKNAFILQGSKCEWICATEVVDDKFLWLSVLQTAIRSSMK", "length": 958, "header": "tr|A0A8C2QNF6-1|A0A8C2QNF6_CRIGR Isoform 1 of Epithelial cell-transforming sequence 2 oncogene-like OS=Cricetulus griseus OX=10029 GN=Ect2l PE=4 SV=1 CANONICAL=A0A8C2QNF6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QNF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6/entry", "sequence": { "sequence": "MSFGNFPQKSLEVESFHTRFSTWTPVNNQPLNRQLFQERVTLISHWFDLWTNKQRQEFLFTILSQCSKSQLRFIQGWFSERKQVARVDFSTVLPRSISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCTKFGWFLPYTPAQNEYGAWKQHYIACVSSLDWLTPREAAAVYGTLNEPKTEDEEFKERQREKCLRKVIWEKIAFRKKELFKARPPWLSGTRCTGCLKSMSLPSGPRMWRDGAGFYEALERQLVLASLDALPKRSNLSGSHPYPLLLKKNHHGVGRTDDSSSCALQPHVILISSKIPAYEMVVESVKVGVVAMPYEHSGMTLEGLLHLTDRALQGQKARRLGIFSGGNSREIDLLQGYKICIKNLLCPEVRDFWEKLGSCVATEEEGGRVDFFVPLGASEAGIEVLSQLSQLTGTFFSAPTGIATGSYQHILSDWLGPQQDRPSPSDYFSESKLQAWTSFTDSLEDTLKSVRKELHPLFKNLQKSISGRIIGQFMFDTLSMASILNNQDTAQALADGLMELSREGSDKPLEFLSYFLLRKSSKKREGLEGNDILLECDAKVTSDPLMKERSAIEGNSQDTKSSPSQRDLNMEVLLKLERKLQMDSVEKRTQVVRELLQSERQYVQMLGIVRDVYTRPLRAALSSNRAILSASNIHIIFSDTLRILNLNREFLDNLRDRLQEWSPVQCVGEIFIKFGRQLNTYTNFFNNYPVVLKTIEKCREMTPAFRAFLKRHDKTIVTKMLSLPELLLYPSRRFEEYIHLLYALRLHTPTGHTDRGDLTTAIDQIKKYKDYIDQIKENIKMREQLSDVQTIISGCPTLSEVNRYLIKIQDVVQLHCCDETMDFSLRLYEQIRDLSLFLFNDVLLITSRGTSHTPFERTSKTTYQFIASMVLPSMLIEDIPDSKYIKNAFILQGSKCEWICATEVVDDKFLWLSVLQTAIRSSMK", "length": 958, "header": "tr|A0A8C2QNF6-1|A0A8C2QNF6_CRIGR Isoform 1 of Epithelial cell-transforming sequence 2 oncogene-like OS=Cricetulus griseus OX=10029 GN=Ect2l PE=4 SV=1 CANONICAL=A0A8C2QNF6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNF6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNF6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNF6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770493", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770493", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A140LHP3-1", "protein_name": "Epithelial cell transforming sequence 2 oncogene-like", "gene_name": "Ect2l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLGSLPLESVEVESFHTRFSAWTPFKNQSLNRQLFQERVTLISHWFDLWTNKQRREFLFVILSQCSKSQLRFIQDWFSERKQVARVDFSTVLPRFISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCTKFGWFLPYTPTQNEYGAWKHHYIACVSSLDWLTPREAAAVYGTLNEPKTEDEEFQERRREKCLRKIIWENIAFRKKELFKARPPWLSGTRCSRLLKSTSLPGGPQLWRDGTGFYEALERQFLRASLDALPKRSNISGSHSYPLLLKKHHHGVGRTDALPLHAILISSRIPAYEMVMESIKPDVVAVLYEHSGVTLEGLLQLTDRALQGRKAQSLGIFSSGNSREIDLLQGYKICIKNVLWPEVRDFWEKLGSRVATEEEGGHVDLFVPLGASEAGIEVLSQLSQLTGTWFSAPTGIATGSYQHILSDWLGPHQDRTPLSNYFSESKLQAWSSFTEFLEDTLKSVRKTLNPLFKNLQKSISGRMIGQFMFDTLGMDSILNNQGPAQALADGLMELSKEGSEGSAIEDNSQDSKSSPGQSNLNVEVLVKLERKLQMNSVETRAQVVRELVQSERRYVQMLRIVQDVYAKPLRAALSSNRAILSAANIHIIFSDILHILNLNREFLDNLRDRLQEWSPAHCVGEIFIKFGSQLNIYTNFFNNYPVVLKTIEKCREMTPAFRAFLKRHDKTIVTKMLSLPELLIYPSRRFEEYIHLLYALRLHTPAGHVDRGDLTTAIDQVKKYKGYIDQENLKMREQLSDVQTLICGCPTLSEANRYLIRTQDVVQLHCCDEKMDFSLRLYEQIRDLSLLLFNDVLLVSSRSTSHTPFEKTSKTTYQFTASVALPRLLIEDIPDSKYIKNAFILRGSKREWICATEVSDDKFLWLSVLQHAIRSSMK", "length": 909 }, "evidence": [ { "id": "A0A8C2QNF6", "url": "https://omabrowser.org/oma/group/A0A8C2QNF6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0ABK0LE77-1", "protein_name": "Epithelial cell transforming 2 like", "gene_name": "Ect2l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLGNLSLKSLEVESFHTRFSAWTPFKNQSLNRQLFQERVTLISHWFDLWTNKQRQEFLFMILSRSSKSQLRFIQDWLSERKQVARVDFSTVLPRCISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCTRFGWFLPYAPTRNEYGAWKQHYIACVSSLDWLTPREAAAVYGTLNEPKTEDEELQERQREKCLRKTIWEKIALRKKELFKARPPWLTGTRCSRSLKCTSLPGGPQLWRDRTGFCEALERQFLRASLDALPQRSNISGSHSYLSLLKKSHPELGRTDDSSSCESPLHVILISSRIPAYEMVLDSVKAGVVAVLYEPRGVTFEGLLHLLGRALQGRKAQGLGIFSSGNSREIDLLQGYKICIKNLLWPEVRDFWEKLGSCVTTEEEGGHVDLFVPLGASETGIEVLSLLSQLTGTSFSAPAGVATGSYQHILSDWLGPHRDGTPLSNYFIESKLQAWSSFTEFLEDTLKSVRKKLSPLFQNLQESIGGRMIGQFMFDTLGMDSILNNQGVAQALADGLMELSKEGSERSSIEDNSQDTKSSPRQSNLNMEALTTLERRLQMDSVEKRTRVVKELVQSERRYVQTLGIVRDVYARPLRAALSSNRAILSAANIHIIFSDTLHILNLNREFLDNLRDRLQEWSPAHCVGEIFIKFGSQLNVYTNFFNNYPVVLKTIEKCREMAPAFRAFLKRHDRTIVTKMLSLPELLLYPSRRFEEYIHLLYALRLHTPAGHVDRGNLTTAIEQIKKYKDYIDQIKENFKMREQLSDIQTLIWGCPTLSEANRYLIRIQDVVQLQCCEEKTEFYLRLYEQTQDLSLFLFSDVLLVTSRSTSHTPFEKTCKTTYRFSASVALPRVLIEDIPDSRYIKNAFVLRGLKRDWICATESPDDKFLWLSVLQHAIRSSMK", "length": 916 }, "evidence": [ { "id": "A0A8C2QNF6", "url": "https://omabrowser.org/oma/group/A0A8C2QNF6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q008S8-1", "protein_name": "Epithelial cell-transforming sequence 2 oncogene-like", "gene_name": "ECT2L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESFHTRFSAWTPFSNKSLNRQLFQERVALISHWFDLWTNKQRQEFLFAIFLRCTKSQLRFVQDWFSERMQVAKVDFSTVLPRFISLYIFSFLSPKDLCAAAQVSWPWKFLTEQDCLWMPKCVKFGWFLPYTPTDNEYGAWKRHYIACVSHLDWLTPREAAATYGTLNEPKTEDEELLERQREKCLRKRIWEKIALRKKELFKVRPPWVSGTCCSSVLKPRCQPRLSQTVRERVGLHEALEKQLVLTSLETLPKRSNISGSHSYPLLSKKNWHGVHKNDDRSSYALRPHFMLISSRIPAYEMVMESVKAGVVSVVYEHSVTLESLLYLIEKALDGQKAQSIGIFSDGDSREINLLQGYKIGVKNLLRPEVRDFWEKLGSYVATEEEGGHVDFFVPLGASEAGIEVLSQLSQLTGTFFTAPTGIATGSYQHILSDWLGSQWGKAPSSIYFCESKLQTWSSFTDFLEETLKTVRKQLYPFFKELQKSISGRMIGQFMFDTMGMTNILNNQDTAQALADGLMELSKEDSERNVVEDNSWDTKSRLSKNDLNFEALINLERILQKDSAEKRARVVRELLQSERKYVQILEIVRDVYVAPLKAALSSNRAILSAANIQIIFCDILQILSLNRQFLDNLRDRLQEWGPAHCVGEIVTKFGSQLNTYTNFFNNYPVILKTIEKCREMIPAFRTFLKRHDKTIVTKMLSLPELLLYPSRRFEEYLNLLYAVRLHTPAEHVDRGDLTTAIDQIKKYKGYIDQMKQNITMKDHLSDIQRIIWGCPTLSEVNRYLIRVQDVAQLHCCDEEISFSLRLYEHIHDLSLFLFNDALLVSSRGTSHTPFERTSKTTYQFIASVALHRLLIENIPDSKYVKNAFILQGPKYKWICATEIEDDKFLWLSVLRNAIKSSMEK", "length": 904 }, "evidence": [ { "id": "A0A8C2QNF6", "url": 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615097.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511429", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511429" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNI2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNI2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756479", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNI2", "locus": {} } ], "crossref": [ { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756479", "url": "https://www.ncbi.nlm.nih.gov/gene/100756479", "database": "GeneID", "categories": [ 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GN=LOC100756479 PE=4 SV=1 CANONICAL=A0A8C2QNI2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QNI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNI2/entry", "sequence": { "sequence": "MDFGRARRAVLQLLGATAPADVPALLHWMRTTRDFDEFTQDNNDIMLKNIADDLRSCLPQEAVLCSEQLALQKIRQQPEPTVHVDAFLYDEDVIDSLCEEGKMSRNYCTACGSHQTAPLGFISHSFSLEELKFIYQHVLPDLSGKVLVDIGSRLGTVLYAGYLYSSAVQLYGVELNGEFCQLQEMVIKKYQFGDRIKVLHADICTQGSLLQSADVIVMNNVFEYFLTEPQQASAWDYIIHNVRKQGSLLLTVPSLQDSLLGLETNMQLSSWVEEIPLNFDVYPQRDMDRETLEQIHLYKVL", "length": 301, "header": "tr|A0A8C2QNI2-1|A0A8C2QNI2_CRIGR Isoform 1 of Uncharacterized protein LOC100756479 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100756479 PE=4 SV=1 CANONICAL=A0A8C2QNI2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYH4/entry", "sequence": { "sequence": "MDFGRARRAVLQLLGATAPADVPALLHWMRTTRDFDEFTQDNNDIMLKNIADDLRSCLPQEAVLCSEQLALQKIRQQPEPTVHVDAFLYDEDVIDSLCEEGKMSRNYCTACGSHQTAPLGFISHSFSLEELKFIYQHVLPDLSGKVLVDIGSRLGTVLYAGYLYSSAVQLYGVELNGEFCQLQEMVIKKYQFGDRIKVLHADICTQGSLLQSADVIVMNNVFEYFLTEPQQARTIHLPPPLAIPALASI", "length": 249, "header": "tr|A0A9J7GYH4-1|A0A9J7GYH4_CRIGR Computationally mapped isoform of Uncharacterized protein LOC100756479 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100756479 PE=4 SV=1 CANONICAL=A0A8C2QNI2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM5/entry", "sequence": { "sequence": "MLKNIADDLRSCLPQEAVLCSEQLALQKIRQQPEPTVHVDAFLYDEDVIDSLCEEGKMSRNYCTACGSHQTAPLGFISHSFSLEELKFIYQHVLPDLSGKVLVDIGSRLGTVLYAGYLYSSAVQLYGVELNGEFCQLQEMVIKKYQFGDRIKVLHADICTQGSLLQSADVIVMNNVFEYFLTEPQQASAWDYIIHNVRKQGSLLLTVPSLQDSLLGLETNMQLSSWVEEIPLNFDVYPQRDMDRETLEQIHLYKVL", "length": 256, "header": "tr|A0A9J7JQM5-1|A0A9J7JQM5_CRIGR Computationally mapped isoform of Uncharacterized protein LOC100756479 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100756479 PE=4 SV=1 CANONICAL=A0A8C2QNI2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295082", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295082" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP02", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mpped1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02", "locus": {} } ], "crossref": [ { "id": "cd07379", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07379", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769889", "url": "https://www.ncbi.nlm.nih.gov/gene/100769889", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051693", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051693", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769889", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769889", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IKTRICM", "url": "https://omabrowser.org/oma/group/IKTRICM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QP02", "url": "https://www.orthodb.org/?gene=A0A8C2QP02", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12905", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12905", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12905:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12905:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295082", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295082", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QP02", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP02-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRPRWDPGILKAEALALLPCGLGMAFSQSHVMAARRHQHGRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQALLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPRNS", "length": 326, "header": "tr|A0A8C2QP02-1|A0A8C2QP02_CRIGR Isoform 1 of Metallophosphoesterase domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Mpped1 PE=3 SV=1 CANONICAL=A0A8C2QP02-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QP02-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02/entry", "sequence": { "sequence": "MWRPRWDPGILKAEALALLPCGLGMAFSQSHVMAARRHQHGRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQALLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPRNS", "length": 326, "header": "tr|A0A8C2QP02-1|A0A8C2QP02_CRIGR Isoform 1 of Metallophosphoesterase domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Mpped1 PE=3 SV=1 CANONICAL=A0A8C2QP02-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP02", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP02", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769889", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769889", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0L833-1", "protein_name": "Metallophosphoesterase domain containing 1", "gene_name": "Mpped1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRAPGPGGRRGPRRGRGSRGGRDSGGRARGAGARGRDRAPAGPGRAGGAARRRAGPGRRGAGRGRGRGRGEPPAPRRRSLAPTRSLGRAAQRPPPLRAALAGAGPPPPSARAAARGRRRGARGQSVRRSGGGPGRGGGSRGGGRCPGGRRRSMWRTRWDAGILKAEALALLPCGLGMAFSQSHVMASRRHQHGRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPRNS", "length": 478 }, "evidence": [ { "id": "A0A8C2QP02", "url": "https://omabrowser.org/oma/group/A0A8C2QP02/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1C8B4-1", "protein_name": "Metallophosphoesterase domain containing 1", "gene_name": "MPPED1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAFAQSHIMAARRHQHSRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCISDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPESYENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPDGIDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRIQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPLNPPIVIDLPTPRNT", "length": 302 }, "evidence": [ { "id": "A0A8C2QP02", "url": "https://omabrowser.org/oma/group/A0A8C2QP02/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1QUV1-1", "protein_name": "Metallophosphoesterase domain-containing protein 1 isoform X1", "gene_name": "mpped1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAFTLSEIMAARRQQQQSQRGGRGVVEVDEYSANPTQAFTFYNINQGRFQPPHVHMVDPIAHDTPKPPGYTRFVCISDTHSRTDAIQMPYGDVLLHAGDFTELGLPSEVKKFNDWLGTLPYEIKIVIAGNHELTFDQEFMADLIKQDFYYFPSASKLKPENYENVQSLLTNCIYLQDSDVTVRGFRIYGSPWQPWYYGWGFNLPRGQALLDKWNQIPDSTDILLTHCPPLGFLDWVPRKMQRVGCMELLNTVQRRVQPKLHVFGHIHEGYGVMTDGTTTFVNASACTVNFQPMNPPIVFDLPNPRSS", "length": 307 }, "evidence": [ { "id": "A0A8C2QP02", "url": "https://omabrowser.org/oma/group/A0A8C2QP02/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3LHN0-1", "protein_name": "Metallophosphoesterase domain containing 1", "gene_name": "MPPED1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MWRARWDPGVLKAEALALLPCGLGMAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGFRVYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPRNS", "length": 326 }, "evidence": [ { "id": "A0A8C2QP02", "url": "https://omabrowser.org/oma/group/A0A8C2QP02/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "O15442-1", "protein_name": "Metallophosphoesterase domain-containing protein 1", "gene_name": "MPPED1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWRSRWDASVLKAEALALLPCGLGMAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPRNS", "length": 326 }, "evidence": [ { "id": "A0A8C2QP02", "url": "https://omabrowser.org/oma/group/A0A8C2QP02/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91ZG2-1", "protein_name": "Metallophosphoesterase domain-containing protein 1", "gene_name": "Mpped1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRPRWDPGILKAEALALLPCGLGMAFSQSHVMASRRHQHGRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPRNS", "length": 326 }, "evidence": [ { "id": "A0A8C2QP02", "url": "https://omabrowser.org/oma/group/A0A8C2QP02/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP02", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QP02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP02" }, { "id": "PF00149", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00149" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calcineurin-like phosphoesterase", "eco_id": "ECO_0000259", "start_pos": 91, "end_pos": 287, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QP07-1", "uniprot_ac": "A0A8C2QP07", "uniprot_id": "A0A8C2QP07_CRIGR", "mass": { "chemical_mass": 45569.0, "monoisotopic_mass": 45569.0 }, "refseq": { "ac": "XP_003495296", "name": "protein SLX4IP isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495296" }, "gene_names": [ { "name": "Slx4ip", "type": "recommended", "evidence": [ { "id": "A0A8C2QP07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07" } ] }, { "name": "Slx4ip", "type": "synonym", "evidence": [ { "id": "XP_003495296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495296" } ] } ], "protein_names": [ { "name": "Protein SLX4IP isoform X1", "type": "synonym", "evidence": [ { "id": "A0A8C2QP07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07/entry#names_and_taxonomy" } ] }, { "name": "protein SLX4IP isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495296" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613587.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495296" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP07", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slx4ip", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07", "locus": {} } ], "crossref": [ { "id": "100769336", "url": "https://www.ncbi.nlm.nih.gov/gene/100769336", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769336", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769336", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MKNKPGQ", "url": "https://omabrowser.org/oma/group/MKNKPGQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QP07", "url": "https://www.orthodb.org/?gene=A0A8C2QP07", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28557", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28557", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28557:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28557:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495296", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QP07", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP07-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6B4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6B4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKKFAIKCGNFAVLVDLHIVPQGSNKDSSWFSEQKKEEVCLLLKETIDSRVKEYAGIYKQHRPSNAEFTRSSPLSLKGYGFLITAYFVKRGIHLRCIQNSQNTELRIFPDRFVVCVSQLPFGPDTWTSQNEKSTKRTLHGVSDYFAECAESSPSPATKHKRNALQEIVRRTKAKSSAGSKSQTSTDLVGRPSDSVIAVVPRRRASAILLSETMGPTQDDIKAAKSHRGLPVQKLENVSQTQPEDTSSQQRPHPGEWLKTGLLSRSPVCSYESASPGPKQSPRAAKTQQKRRNCGSAEVFDHRSRVSLGNDGLVPGDMMVEKSTAVSVLPALELSDTGLLLNQDLAKVTAKEELYALENLSSRHLMTNNPGLVQQTSSPAVDERLATVQGGPSKKRKKLQSSSRGCSGKKNFSV", "length": 415, "header": "tr|A0A8C2QP07-1|A0A8C2QP07_CRIGR Isoform 1 of Protein SLX4IP isoform X1 OS=Cricetulus griseus OX=10029 GN=Slx4ip PE=4 SV=1 CANONICAL=A0A8C2QP07-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QP07-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07/entry", "sequence": { "sequence": "MASKKFAIKCGNFAVLVDLHIVPQGSNKDSSWFSEQKKEEVCLLLKETIDSRVKEYAGIYKQHRPSNAEFTRSSPLSLKGYGFLITAYFVKRGIHLRCIQNSQNTELRIFPDRFVVCVSQLPFGPDTWTSQNEKSTKRTLHGVSDYFAECAESSPSPATKHKRNALQEIVRRTKAKSSAGSKSQTSTDLVGRPSDSVIAVVPRRRASAILLSETMGPTQDDIKAAKSHRGLPVQKLENVSQTQPEDTSSQQRPHPGEWLKTGLLSRSPVCSYESASPGPKQSPRAAKTQQKRRNCGSAEVFDHRSRVSLGNDGLVPGDMMVEKSTAVSVLPALELSDTGLLLNQDLAKVTAKEELYALENLSSRHLMTNNPGLVQQTSSPAVDERLATVQGGPSKKRKKLQSSSRGCSGKKNFSV", "length": 415, "header": "tr|A0A8C2QP07-1|A0A8C2QP07_CRIGR Isoform 1 of Protein SLX4IP isoform X1 OS=Cricetulus griseus OX=10029 GN=Slx4ip PE=4 SV=1 CANONICAL=A0A8C2QP07-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6B4/entry", "sequence": { "sequence": "MASKKFAIKCGNFAVLVDLHIVPQGSNKDSSWFSEQKKEVMAFSSLPISSRGGYTFAVFRTHRILNFVYFLTDLWSVLVSFHLVLILGQARMKSRQKEPSMECLTILLSVQRVLLLLLQSTREMLYKKL", "length": 129, "header": "tr|A0A9J7G6B4-1|A0A9J7G6B4_CRIGR Computationally mapped isoform of Protein SLX4IP isoform X3 OS=Cricetulus griseus OX=10029 GN=Slx4ip PE=4 SV=1 CANONICAL=A0A8C2QP07-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR4/entry", "sequence": { "sequence": "MASKKFAIKCGNFAVLVDLHIVPQGSNKDSSWFSEQKKEVMAFSSLPISSRGGYTFAVFRTHRILNFVYFLTDLWSVLVSFHLVLILGQARMKSRVRRTKAKSSAGSKSQTSTDLVGRPSDSVIAVVPRRRASAILLSETMGPTQDDIKAAKSHRGLPVQKLENVSQTQPEDTSSQQRPHPGEWLKTGLLSRSPVCSYESASPGPKQSPRAAKTQQKRRNCGSAEVFDHRSRVSLGNDGLVPGDMMVEKSTAVSVLPALELSDTGLLLNQDLAKVTAKEELYALENLSSRHLMTNNPGLVQQTSSPAVDERLATVQGGPSKKRKKLQSSSRGCSGKKNFSV", "length": 341, "header": "tr|A0A9J7JTR4-1|A0A9J7JTR4_CRIGR Computationally mapped isoform of Protein SLX4IP isoform X2 OS=Cricetulus griseus OX=10029 GN=Slx4ip PE=4 SV=1 CANONICAL=A0A8C2QP07-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP07", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP07", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP07" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769336", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769336", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AGP4-1", "protein_name": "SLX4 interacting protein", "gene_name": "Slx4ip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ETLHLLRGGCLGDCGNFAVLVDLHVLPQGSNKDSSWFSEQKKEEVCLLLKETIDSRVKEYVGIYKQHRPSTAEFSRSSPLSLKGYGFQITAYFIRRGIHLRCIQSSRNTELRIFPESFVVCVSQLAFGHDTWANQNEKSTQRALHGASDYFAQCAESSPPPGIKLKRNTLKEIVRRAESKGTDVSKPQTSRDLVGKSSDSVITVVPRRRDASAILLSEPVGQAQDDIRAAKSHQELPVQKLENVSQTQPGDTRSQQQLHPGEWLKTGLLSRSPVYNYESASPGPKQSPRAAKTQQKRRNCGSVEDSDHRRRVSLGNEGLVPEDSVVETSTAVRVLPALELSNPGLLLKQDLAKATAKEELHALENLSSRHLVTDNPGQARPTGSATVTERLAPVQSGPSKKRKKLQSSSRGCSGKKS", "length": 417 }, "evidence": [ { "id": "A0A8C2QP07", "url": "https://omabrowser.org/oma/group/A0A8C2QP07/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5VYV7-1", "protein_name": "Protein SLX4IP", "gene_name": "SLX4IP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASKKFAVKCGNFAVLVDLHILPQGSNKDTSWFSEQKKEEVCLLLKETIDSRVQEYLEVRKQHRPSNAEFTRSNPLSLKGYGFQITAYFLKRGIRLRCIRSTQNAELCVFPDRFVVCVSQLAFSRDLLASQNEDLTERVLHGVSDYFAECAESSLPPSAKLRRNALKEIVKRTETKSSVTSKSQTRRDTVETSSDSVIAEIARRRNDGQASSSPPSESMGQAKDSIKAAESHWGLPVQKLEKVNQTQPEDTSGQQKPHPGERLKTGLLSRSPVCSCESASPCPKQSPRVAKTQQKRRNCSSAEDFDHHGRVSLGSDRLVPREIIVEKSKAVRVLPASELSDPGLLLKQDLAKTTSKEELHVLESLSSRHLMKNNPGQAQQTGLATNTERLSTIQNSPTKKRKKYERGH", "length": 408 }, "evidence": [ { "id": "A0A8C2QP07", "url": "https://omabrowser.org/oma/group/A0A8C2QP07/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D7Y9-1", "protein_name": "Protein SLX4IP", "gene_name": "Slx4ip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKKFAVKCGNFAVLVDLHVLPQGSNRDSSWFSEQKKEEVCLLLKETIDSRVKEYVGIYKQRKPSSAEFTRSSPLSLKGYGFQITAYFLKRGIHLHCIQNSQNTELRVFPERFVVCVSQLAFGHDIWANQNEKSTKKALHGVSDYFPECAESSPSPGTKLKRNALKEIVRRTKSKGTDVSKPQPSGDLVGRSSDSVITVVPWRRDASAILLSESVGQAQDDIRAAKSHQELPVQKLENVSQTQPGDTRSQQQLHPGEWLKTGLLSRSPAYNYESASPGPKQSLRAAKTQQKHRNCGSVEDCDHRRRVSLGNEGLVPEDADRERSTAVRVLPALELSDPGLLLKQDLAKAKAKEELHALENLSSRHLVTNNPGQAQQSDSAAITEQLATDQGGPSKKRKKLQSYNRGCSGKKN", "length": 413 }, "evidence": [ { "id": "A0A8C2QP07", "url": "https://omabrowser.org/oma/group/A0A8C2QP07/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 }, { "start_pos": 360, "end_pos": 362 }, { "start_pos": 412, "end_pos": 414 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QP27-1", "uniprot_ac": "A0A8C2QP27", "uniprot_id": "A0A8C2QP27_CRIGR", "mass": { "chemical_mass": 63858.0, "monoisotopic_mass": 63858.0 }, "refseq": { "ac": "XP_003495334", "name": "5'-nucleotidase domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495334" }, "gene_names": [ { "name": "Nt5dc2", "type": "recommended", "evidence": [ { "id": "A0A8C2QP27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" } ] }, { "name": "Nt5dc2", "type": "synonym", "evidence": [ { "id": "XP_003495334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495334" } ] } ], "protein_names": [ { "name": "5'-nucleotidase domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495334" } ] }, { "name": "5'-nucleotidase domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QP27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 309 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613589.1) and transcript sequence (IACG01087628.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003495334.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495334", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495334" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP27", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nt5dc2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27", "locus": {} } ], "crossref": [ { "id": "cd07522", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07522", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763624", "url": "https://www.ncbi.nlm.nih.gov/gene/100763624", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763624", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763624", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QP27", "url": "https://www.orthodb.org/?gene=A0A8C2QP27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05761", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05761", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495334", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495334", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QP27", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP27-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAGLRAAARRWLLCGGHGGPRAASTSPSCPGCGPPGPGAHCPSTPRSAPADSADLSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLSDVEVYGFDYDYTLAQYADALHPEIFNAARDILIEHYKYPEGIRKYDYDPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDDEVIDLYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDYFLVHGLEFDQVHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPNFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLATWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 553, "header": "tr|A0A8C2QP27-1|A0A8C2QP27_CRIGR Isoform 1 of 5'-nucleotidase domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nt5dc2 PE=3 SV=1 CANONICAL=A0A8C2QP27-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QP27-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27/entry", "sequence": { "sequence": "MAGAGLRAAARRWLLCGGHGGPRAASTSPSCPGCGPPGPGAHCPSTPRSAPADSADLSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLSDVEVYGFDYDYTLAQYADALHPEIFNAARDILIEHYKYPEGIRKYDYDPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDDEVIDLYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDYFLVHGLEFDQVHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPNFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLATWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 553, "header": "tr|A0A8C2QP27-1|A0A8C2QP27_CRIGR Isoform 1 of 5'-nucleotidase domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nt5dc2 PE=3 SV=1 CANONICAL=A0A8C2QP27-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP27", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP27", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763624", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763624", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP27", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" } ], "pmid": "" }, { "name": "5'-nucleotidase activity", "id": "GO:0008253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008253", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP27", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A8C2QP27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 106, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 106, "end_pos": 106, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8C2QP27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP27" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 391, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 391, "end_pos": 391, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QP41-1", "uniprot_ac": "A0A8C2QP41", "uniprot_id": "A0A8C2QP41_CRIGR", "mass": { "chemical_mass": 3808.0, "monoisotopic_mass": 3808.0 }, "refseq": { "ac": "XP_035300660", "name": "sarcolipin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300660" }, "gene_names": [ { "name": "Sln", "type": "recommended", "evidence": [ { "id": "A0A8C2QP41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41" } ] }, { "name": "Sln", "type": "synonym", "evidence": [ { "id": "XP_035300660", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300660" } ] } ], "protein_names": [ { "name": "Sarcolipin", "type": "synonym", "evidence": [ { "id": "A0A8C2QP41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41/entry#names_and_taxonomy" } ] }, { "name": "sarcolipin", "type": "synonym", "evidence": [ { "id": "XP_035300660", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300660" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300660" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sln", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41", "locus": {} } ], "crossref": [ { "id": "cd20253", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20253", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769600", "url": "https://www.ncbi.nlm.nih.gov/gene/100769600", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769600", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769600", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QP41", "url": "https://www.orthodb.org/?gene=A0A8C2QP41", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF05366", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05366", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300660", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QP41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP41-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERSTQELFLNFTVVLITVLLMWLLVRSYQY", "length": 31, "header": "tr|A0A8C2QP41-1|A0A8C2QP41_CRIGR Isoform 1 of Sarcolipin OS=Cricetulus griseus OX=10029 GN=Sln PE=4 SV=1 CANONICAL=A0A8C2QP41-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QP41-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41/entry", "sequence": { "sequence": "MERSTQELFLNFTVVLITVLLMWLLVRSYQY", "length": 31, "header": "tr|A0A8C2QP41-1|A0A8C2QP41_CRIGR Isoform 1 of Sarcolipin OS=Cricetulus griseus OX=10029 GN=Sln PE=4 SV=1 CANONICAL=A0A8C2QP41-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme regulator activity", "id": "GO:0030234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030234", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP41", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP62", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP62" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. 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Annotation" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768031", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768031", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FERMWIS", "url": "https://omabrowser.org/oma/group/FERMWIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QP89", "url": "https://www.orthodb.org/?gene=A0A8C2QP89", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EYP4", "url": "https://www.orthodb.org/?gene=A0A9J7EYP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027242653", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242653", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QP89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP89-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESYDNIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAKEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTQAVPIYEGFAMPHSIIRVDIAGRDVSRYLRLLLRKEGADFYTSAEFEVVRTIKERACYLSINPQKEEALETKKVQYTLPDGSTIDVGPACFRAPELLFQPDLLGDESEGLHEVLAFAIHKSDMDLRRTLFSNIMLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEDDGSRAIHRKTF", "length": 376, "header": "tr|A0A8C2QP89-1|A0A8C2QP89_CRIGR Isoform 1 of Beta-centractin isoform X2 OS=Cricetulus griseus OX=10029 GN=Actr1b PE=3 SV=1 CANONICAL=A0A8C2QP89-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QP89-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP89/entry", "sequence": { "sequence": "MESYDNIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAKEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTQAVPIYEGFAMPHSIIRVDIAGRDVSRYLRLLLRKEGADFYTSAEFEVVRTIKERACYLSINPQKEEALETKKVQYTLPDGSTIDVGPACFRAPELLFQPDLLGDESEGLHEVLAFAIHKSDMDLRRTLFSNIMLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEDDGSRAIHRKTF", "length": 376, "header": "tr|A0A8C2QP89-1|A0A8C2QP89_CRIGR Isoform 1 of Beta-centractin isoform X2 OS=Cricetulus griseus OX=10029 GN=Actr1b PE=3 SV=1 CANONICAL=A0A8C2QP89-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP4/entry", "sequence": { "sequence": "MESYDNIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAKEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTQAVPIYEGFAMPHSIIRVDIAGRDVSRYLRLLLRKEGADFYTSAEFEVVRTIKERACYLSINPQKEEALETKKVQYTLPDGSTIDVGPACFRAPELLFQPDLLGDESEGLHEVLAFAIHKSDMDLRRTLFSNIMLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMNRPLYTSKSQSRSLKQRPP", "length": 375, "header": "tr|A0A9J7EYP4-1|A0A9J7EYP4_CRIGR Computationally mapped isoform of Beta-centractin isoform X1 OS=Cricetulus griseus OX=10029 GN=Actr1b PE=3 SV=1 CANONICAL=A0A8C2QP89-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "id": "A0A8C2QP89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP89" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP89" } ], "pmid": "" }, { "name": "microtubule organizing center", "id": "GO:0005815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005815", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP89", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QPA0-1", "uniprot_ac": "A0A8C2QPA0", "uniprot_id": "A0A8C2QPA0_CRIGR", "mass": { "chemical_mass": 55995.0, "monoisotopic_mass": 55995.0 }, "refseq": { "ac": "XP_027279756", "name": "N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279756" }, "gene_names": [ { "name": "Nagpa", "type": "recommended", "evidence": [ { "id": "A0A8C2QPA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPA0" } ] }, { "name": "Nagpa", "type": "synonym", "evidence": [ { "id": "XP_027279756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279756" } ] } ], "protein_names": [ { "name": "N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027279756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279756" }, { "id": "A0A8C2QPA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPA0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279756" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPA0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nagpa", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPA0", "locus": {} } ], "crossref": [ { "id": "100774024", "url": "https://www.ncbi.nlm.nih.gov/gene/100774024", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018711", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018711", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774024", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774024", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QPA0", "url": "https://www.orthodb.org/?gene=A0A8C2QPA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40446:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40446:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09992", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09992", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279756", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QPA0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QPA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPRGRGLLFLPSLLGLLGVVWCSLSSGVSRDDDLLLPYPLARTRPSRDCARVRAGSREQESWPPPPATPGASHPAAVRTFVSHFEGRAVAGHLTRVAAPLRTFSVLEPGGPGGCAQRRRATVEDTAVPAGCLVAQNGGFFRMNTGECLGNVVSDGRLVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDSVNPFVQLLSGVVWLIRNGSIYINESQVTECDETQETGSFSKFVNVISARTAVGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRRVSTVVCVHEPHCQPPNCSGHGTCVDGHCECTSHFWRGAACSELDCGPSNCSQHGLCTETGCHCDAGWTGSNCSEECPLGWYGPGCQRPCQCEHQCPCDPQTGNCSISQVKQCLRPTEATPRAGEMAFFTRTTWLALTLILVFLLLISIVVNVNLLLGSKTERNRHLDGDYVYHPLQEMNGELLVAEKEQTEDTCNPFKD", "length": 517, "header": "tr|A0A8C2QPA0-1|A0A8C2QPA0_CRIGR Isoform 1 of N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X2 OS=Cricetulus griseus OX=10029 GN=Nagpa PE=4 SV=1 CANONICAL=A0A8C2QPA0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QPA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPA0/entry", "sequence": { "sequence": "MAAPRGRGLLFLPSLLGLLGVVWCSLSSGVSRDDDLLLPYPLARTRPSRDCARVRAGSREQESWPPPPATPGASHPAAVRTFVSHFEGRAVAGHLTRVAAPLRTFSVLEPGGPGGCAQRRRATVEDTAVPAGCLVAQNGGFFRMNTGECLGNVVSDGRLVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDSVNPFVQLLSGVVWLIRNGSIYINESQVTECDETQETGSFSKFVNVISARTAVGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRRVSTVVCVHEPHCQPPNCSGHGTCVDGHCECTSHFWRGAACSELDCGPSNCSQHGLCTETGCHCDAGWTGSNCSEECPLGWYGPGCQRPCQCEHQCPCDPQTGNCSISQVKQCLRPTEATPRAGEMAFFTRTTWLALTLILVFLLLISIVVNVNLLLGSKTERNRHLDGDYVYHPLQEMNGELLVAEKEQTEDTCNPFKD", "length": 517, "header": "tr|A0A8C2QPA0-1|A0A8C2QPA0_CRIGR Isoform 1 of N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X2 OS=Cricetulus griseus OX=10029 GN=Nagpa PE=4 SV=1 CANONICAL=A0A8C2QPA0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 70, "start_aa": "Thr", "end_pos": 70, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr70", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"uniprot_canonical_ac": "A0A8C2QPH6-1", "uniprot_ac": "A0A8C2QPH6", "uniprot_id": "A0A8C2QPH6_CRIGR", "mass": { "chemical_mass": 58316.0, "monoisotopic_mass": 58316.0 }, "refseq": { "ac": "XP_003497480", "name": "DEP domain-containing protein 7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497480" }, "gene_names": [ { "name": "Depdc7", "type": "recommended", "evidence": [ { "id": "A0A8C2QPH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6" } ] }, { "name": "Depdc7", "type": "synonym", "evidence": [ { "id": "XP_003497480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497480" } ] } ], "protein_names": [ { "name": "DEP domain-containing protein 7", "type": "recommended", "evidence": [ { "id": "A0A8C2QPH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6/entry#names_and_taxonomy" } ] }, { "name": "DEP domain-containing protein 7 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003497480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497480" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613649.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497480" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Depdc7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6", "locus": {} } ], "crossref": [ { "id": "cd04405", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04405", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04446", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04446", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771553", "url": "https://www.ncbi.nlm.nih.gov/gene/100771553", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771553", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771553", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YCTRVSA", "url": "https://omabrowser.org/oma/group/YCTRVSA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QPH6", "url": "https://www.orthodb.org/?gene=A0A8C2QPH6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16206:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16206:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00610", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00610", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27581", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27581", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497480", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QPH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QPH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H529", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H529", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H529-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H529-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATVREKAAALNLSALHSPAQKPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHHLKRHNDCFIGSEAVDVIYSHLTQNKFFGDVDIPRAKVVRVCQALMDYKVFEAVPTRVFGKDKKPPFEDSSCSLYRFTTIPGQNSQSGNENKVDSPSRYSDTLFQSPEIKSDSLEDLWENLSLKPANSPHINISTRLSPQVINEVWQEETIGRLLQLVDLPFLDSLLKQQEVVPKVPRSKKQPDMVNTSNYLDRGILRAYGDSQEDEWVSAAIDCLEYLPDHMVVDISRNFPEQPDRTDLVKELLFDAIGKYYSTREPLLNHLCDVHNGIAELLVNGKTEIALEATQLFLKLLDSQNREEFRRLLYFMAVAAHPSEFKLQEESDNRMVVKRVFSKAVVNNKNLSKGKTDLLVLFLMDHQKDVFKIPATLHKIVSVKLLAIQKGRDPNKDTGYIYCQRIDESDYSGSKQKKTKEELLNLLKTIDEDSKLSAKEKKKLLGQFHKCHPDIFTEYFGN", "length": 511, "header": "tr|A0A8C2QPH6-1|A0A8C2QPH6_CRIGR Isoform 1 of DEP domain-containing protein 7 OS=Cricetulus griseus OX=10029 GN=Depdc7 PE=3 SV=1 CANONICAL=A0A8C2QPH6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QPH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6/entry", "sequence": { "sequence": "MATVREKAAALNLSALHSPAQKPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHHLKRHNDCFIGSEAVDVIYSHLTQNKFFGDVDIPRAKVVRVCQALMDYKVFEAVPTRVFGKDKKPPFEDSSCSLYRFTTIPGQNSQSGNENKVDSPSRYSDTLFQSPEIKSDSLEDLWENLSLKPANSPHINISTRLSPQVINEVWQEETIGRLLQLVDLPFLDSLLKQQEVVPKVPRSKKQPDMVNTSNYLDRGILRAYGDSQEDEWVSAAIDCLEYLPDHMVVDISRNFPEQPDRTDLVKELLFDAIGKYYSTREPLLNHLCDVHNGIAELLVNGKTEIALEATQLFLKLLDSQNREEFRRLLYFMAVAAHPSEFKLQEESDNRMVVKRVFSKAVVNNKNLSKGKTDLLVLFLMDHQKDVFKIPATLHKIVSVKLLAIQKGRDPNKDTGYIYCQRIDESDYSGSKQKKTKEELLNLLKTIDEDSKLSAKEKKKLLGQFHKCHPDIFTEYFGN", "length": 511, "header": "tr|A0A8C2QPH6-1|A0A8C2QPH6_CRIGR Isoform 1 of DEP domain-containing protein 7 OS=Cricetulus griseus OX=10029 GN=Depdc7 PE=3 SV=1 CANONICAL=A0A8C2QPH6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H529-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H529/entry", "sequence": { "sequence": "MDYKVFEAVPTRVFGKDKKPPFEDSSCSLYRFTTIPGQNSQSGNENKVDSPSRYSDTLFQSPEIKSDSLEDLWENLSLKPANSPHINISTRLSPQVINEVWQEETIGRLLQLVDLPFLDSLLKQQEVVPKVPRSKKQPDMVNTSNYLDRGILRAYGDSQEDEWVSAAIDCLEYLPDHMVVDISRNFPEQPDRTDLVKELLFDAIGKYYSTREPLLNHLCDVHNGIAELLVNGKTEIALEATQLFLKLLDSQNREEFRRLLYFMAVAAHPSEFKLQEESDNRMVVKRVFSKAVVNNKNLSKGKTDLLVLFLMDHQKDVFKIPATLHKIVSVKLLAIQKGRDPNKDTGYIYCQRIDESDYSGSKQKKTKEELLNLLKTIDEDSKLSAKEKKKLLGQFHKCHPDIFTEYFGN", "length": 409, "header": "tr|A0A9J7H529-1|A0A9J7H529_CRIGR Computationally mapped isoform of DEP domain-containing protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Depdc7 PE=4 SV=1 CANONICAL=A0A8C2QPH6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771553", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771553", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZKW7-1", "protein_name": "DEP domain-containing protein 7", "gene_name": "DEPDC7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATVREKAAALSLSAVCSPATRPPGFSLAQKPFGATYVWSSIISALQTQVEVKKRRQNLKCYHDCFIGSDAVDVVFAHLLQNKYFGDVDISRAKVVRVCQALMDYKVFEAVSRRVFGKDKRSVFEDSSSSLYRFTNVSSQADLDKDYQQCTPQRHQKNTLFNTTPVKAESLEDLWENLSLKPANTPQVNISESLSRRVINEVWREQTIARLLQLVDLPLLDSLLEHQAVKPQLPQPKEDSGYVITSNYLDREILKAFSDSQTDEWLSSAIDCLEYLPDHMVVDISRNLPDQLDKADTWKLLLFENIGRYYGQKKEPLLSHAPEVHSGIAELLVNGKMEQSLEAIQLYLKLLDSQIREEFRRLLYFMAVAAHNSELKLQKESDNRMVVKRTFSKAIINNKSLSRGKTDLLILFLVDHQKDVLKIPGTLHKMVSNKLMALQEGQDPSKIAGYTFCQKLDEREYRLNTEKTTKDELLSLLKAIDEDSKLSEKERKRLLGQFHSSNPSIFMQYFGDRVPNMCM", "length": 519 }, "evidence": [ { "id": "A0A8C2QPH6", "url": "https://omabrowser.org/oma/group/A0A8C2QPH6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BIJ1-1", "protein_name": "DEP domain-containing protein 7", "gene_name": "DEPDC7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATVREKAAALNLSAFQSPVQRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHHLKRHNDCFVGSEAVDVIFSHLMQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTTPNQDSQLGKENKVCSPSRYADTLFKSSDIRSTSLEALWENLSLKPADSPRVNISATLSPQVINEVWQEETIGRLLQLIDLPLLDSLLKRQEMIPKVSQPKRQLDLVNNRNYLDRGILKAYSDSQEDEWLSSAIDCLEYLPDQMVVDISRNFPEQPDRIDLVKELLFDAISKYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLFLKLLDSQNREEFRRLLYFMAVAAHPSEFKLQQESDNRMVVKRMFSKAIVHNKNLSKGKTDLLVLFLMDHQRDVFKIPGTLHKIVSIKLMDIQKGRDPNRDAGYIYCQRIDRSDYSDHTRKTTKDELLNLLKNIDEDSKLSTKEKKKLLGQFYKCHPDVFIEYFGD", "length": 511 }, "evidence": [ { "id": "A0A8C2QPH6", "url": "https://omabrowser.org/oma/group/A0A8C2QPH6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4QR86-1", "protein_name": "DEP domain-containing protein 7", "gene_name": "Depdc7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATVREKAAALDLSALHSPAQRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHHLKRHNDCFVGSEAVDVIYSHLTQNKFFGDVDIPRAKVVRVCQALMDYKVFEAVQTRVFGKDKKPAFEDSSCSLYRFTTIPNQDSQLGHENKGTSPSRFSDALFKSSDIKSDSLEDLWENLSLKPTNSPHVSTRLSPQVINEVWQEETIGRLLQLVDLPFLDSLLKQQEVVPKAPQSKRQPDMVNTSNYLDRGILRAYGDSQEDEWISAAIDCLEYLPDQMVVDISRNFPEQPDRTDLVKELLFGAIGKYYSTREPLLNHLSDVHNGIAELLVNGKTEIALEATQLFLKLLDSQNREEFRRLLYFMAVAADPSEFKLQEESDNRMVVKRVFSKAIVNNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLLAIQKGRDPNKDTGYIYCQRIDGREYSSSIQKKTKDQLLSLLKTIDEDSKLSAKEKKKLLGQFHKSHPDIFIEYFGDSF", "length": 511 }, "evidence": [ { "id": "A0A8C2QPH6", "url": "https://omabrowser.org/oma/group/A0A8C2QPH6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91WS7-1", "protein_name": "DEP domain-containing protein 7", "gene_name": "Depdc7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATVREKAAALNLSALHSPAQRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHHLKRHNDCFVGSEAVDVIYSHLTQNKFFGDVDIPRAKVVRVCQALMDYKVFEAVQTRVFGKDKKPTFEDSSCSLYRFTTIPNQDNQLGHENKVHSPSRYSDASFMSSDIKSDSLEDLWENLSLKPASSPHIHISTRLSPQVINEVWQEETIGRLLQLVDLPFLDSLLKQQEVVPKAPQSKRQPDMVNTSNYLDRGILRAYGDSQEDEWISAAIDCLEYLPDQMVVDISRNFPEQPDRTDLVKELLFDAIGRYYSTREPLLNHLYDVHNGIAELLVNGKTEMALEATQLFLKLQDSQNREEFRRLLYFMAVAADPSEFKLQEESDNRMVVKRVFSKAIVNNKNVSKGKTDLLVLFLMDHQKDVFKIPAALHKIVSVKLLAIQKGRDPNKDTGYIYCQRIDESEYSSSTKKKTKDQLLSLLKTIDEDSKLSAKEKKKLLGQFRKTHPDIFTEYFGD", "length": 511 }, "evidence": [ { "id": "A0A8C2QPH6", "url": "https://omabrowser.org/oma/group/A0A8C2QPH6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96QD5-1", "protein_name": "DEP domain-containing protein 7", "gene_name": "DEPDC7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATVQEKAAALNLSALHSPAHRPPGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYKCHPDIFIEHFGD", "length": 511 }, "evidence": [ { "id": "A0A8C2QPH6", "url": "https://omabrowser.org/oma/group/A0A8C2QPH6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8C2QPH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPH6" }, { "id": "PS50186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DEP", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 136, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 177, "end_pos": 179 }, { "start_pos": 189, "end_pos": 191 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 399, "end_pos": 401 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 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"XP_007647240", "name": "protein angel homolog 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647240" }, "gene_names": [ { "name": "Angel2", "type": "recommended", "evidence": [ { "id": "A0A8C2QPL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ] }, { "name": "Angel2", "type": "synonym", "evidence": [ { "id": "XP_007647240", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647240" } ] } ], "protein_names": [ { "name": "Protein angel homolog 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A8C2QPL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6/entry#names_and_taxonomy" } ] }, { "name": "protein angel homolog 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007647240", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647240" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 443 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614540.1) and transcript sequence (IACG01025544.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007647240.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647240", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647240" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Angel2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6", "locus": {} } ], "crossref": [ { "id": "100767019", "url": "https://www.ncbi.nlm.nih.gov/gene/100767019", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19339", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19339", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647240", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647240", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QPL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9J1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METWRCVRRGYGRCVAGRGRYSMFPYPLKSLGQDWTTPLEDLQRYCWNRHISSCLRWPGHYSRAPYPYLSSRHFSLNCRPPLLFESGTQFQYYNWRPDHLSNTSLMHLSSYIMNSDKDEPSSKRRKRHGTIKRNWEYLCSHNKEKTKELEDKNVESTCEDSEEKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSKFSLLSVNPVEFCRRDIPLLDRDNIGLVLLLQPRTPHAASPSICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHRKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRILSIPIWPPNLGISQNCVYEAQQVPRVEKTDSDSHLTEAQLEKTEVLMSAENVSSHLQHHFSLSSVYSHYLPDTGLPEVTTCHSQSAITVDYIFYSAEKEGASRGPGAEVALVGGLKLLARLSLLTEQDLWTVNGLPNEHNSSDHLPLLAKFRLQL", "length": 546, "header": "tr|A0A8C2QPL6-1|A0A8C2QPL6_CRIGR Isoform 1 of Protein angel homolog 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Angel2 PE=4 SV=1 CANONICAL=A0A8C2QPL6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QPL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6/entry", "sequence": { "sequence": "METWRCVRRGYGRCVAGRGRYSMFPYPLKSLGQDWTTPLEDLQRYCWNRHISSCLRWPGHYSRAPYPYLSSRHFSLNCRPPLLFESGTQFQYYNWRPDHLSNTSLMHLSSYIMNSDKDEPSSKRRKRHGTIKRNWEYLCSHNKEKTKELEDKNVESTCEDSEEKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSKFSLLSVNPVEFCRRDIPLLDRDNIGLVLLLQPRTPHAASPSICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHRKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRILSIPIWPPNLGISQNCVYEAQQVPRVEKTDSDSHLTEAQLEKTEVLMSAENVSSHLQHHFSLSSVYSHYLPDTGLPEVTTCHSQSAITVDYIFYSAEKEGASRGPGAEVALVGGLKLLARLSLLTEQDLWTVNGLPNEHNSSDHLPLLAKFRLQL", "length": 546, "header": "tr|A0A8C2QPL6-1|A0A8C2QPL6_CRIGR Isoform 1 of Protein angel homolog 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Angel2 PE=4 SV=1 CANONICAL=A0A8C2QPL6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9J1/entry", "sequence": { "sequence": "METWRCVRRGYGRCVAGRGRYSMFPYPLKSLGQDWTTPLEDLQRYCWNRHISSCLRWPGHYSRAPYPYLSSRHFSLNCRPPLLFESGTQFQYYNWRPDHLSNTSLMHLSSYIMNSDKDEPSSKRRKRHGTIKRNWEYLCSHNKEKTKELEDKNVESTCEDSEEKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSKFSLLSVNPVEFCRRDIPLLDRDNIGLVLLLQPRTPHAASPSICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHRKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRILSIPIWPPNLGISQNCVYEAQQVPRVEKTDSDSHLTEAQLEKTEVLMSAENVSSHLQHHFSLSSVYSHYLPDTGLPEVTTCHSQSAITVDYIFYSAEKEGASRGPEQDLWTVNGLPNEHNSSDHLPLLAKFRLQL", "length": 526, "header": "tr|A0A9J7K9J1-1|A0A9J7K9J1_CRIGR Computationally mapped isoform of Protein angel homolog 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Angel2 PE=4 SV=1 CANONICAL=A0A8C2QPL6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767019", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767019", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" }, { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" }, { "name": "RNA 2'-phosphatase activity", "id": "GO:0160273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160273", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" }, { "name": "RNA 2',3'-cyclic phosphatase activity", "id": "GO:0160272", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160272", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" }, { "name": "Cajal body", "id": "GO:0015030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015030", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of mitotic cell cycle", "id": "GO:0045930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045930", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" }, { "name": "3'-UTR-mediated mRNA stabilization", "id": "GO:0070935", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070935", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPL6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPL6" } ], "pmid": "" 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"database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5ZZ30-1", "protein_name": "Transmembrane 4 L six family member 1", "gene_name": "Tm4sf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCYVKCARYIGFSLVWAAVFCIVANVLLYFPNGETKYATEGHLSRFVWYFAGIVGGGLLMLLPAFLFIRLEEEDCCGCCGYENYGKRCSMLSSVLAALIGITGSGYCVIVASLGLAEGPKCSDANGVWNYTFASTEGQYLLDSSMWSKCYEPKHIVEWHVTLFSILLAFAAIEFILCLIQVINGVLGGTCGYCCSRQQINMAIVSWRLSNQLDIFLSAGCSSNQSPGQEPSITVIREASPRN", "length": 242 }, "evidence": [ { "id": "A0A8C2QPU7", "url": "https://omabrowser.org/oma/group/A0A8C2QPU7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7FBS4-1", "protein_name": "Transmembrane 4 L6 family member 1", "gene_name": "tm4sf1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MCSTGFARSLGFALVPLATCCIVANVLLFFPDGQLNYVQEQHVTQYVWFFMGIGGGGLAMLIPACVFLGMGKCVYSCGTESCAMCGSVIAALIGLAGSGYCFLISGLALLRGPFCFTRLGWLYPFEQDEGRYLFARERWSECIQPNHIVEWNVTLLSILLGLSTLEFLICFLQFISGLVNAVCRPCCYKQEYSLNA", "length": 196 }, "evidence": [ { "id": "A0A8C2QPU7", "url": "https://omabrowser.org/oma/group/A0A8C2QPU7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P30408-1", "protein_name": "Transmembrane 4 L6 family member 1", "gene_name": "TM4SF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCYGKCARCIGHSLVGLALLCIAANILLYFPNGETKYASENHLSRFVWFFSGIVGGGLLMLLPAFVFIGLEQDDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPLCLDSLGQWNYTFASTEGQYLLDTSTWSECTEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICGFCCSHQQQYDC", "length": 202 }, "evidence": [ { "id": "A0A8C2QPU7", "url": "https://omabrowser.org/oma/group/A0A8C2QPU7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q64302-1", "protein_name": "Transmembrane 4 L6 family member 1", "gene_name": "Tm4sf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCYVKCARYIGYSLVWAAVFCIVANALLYFPNGETKYATEDHLSRFVWYFAGIVGGGLLMLLPAFVFIGMDEEDCCGCCGYENYGKRCSMLSSVLAALIGIVGSAYCVIVASLGLAEGPKCSDAHGVWNYTFASTEGQYLLNSSMWSKCYEPKHIVEWHVTLFSILLAFAAVEFILCLIQVINGMLGGLCGYCCSRQQQYNC", "length": 202 }, "evidence": [ { "id": "A0A8C2QPU7", "url": "https://omabrowser.org/oma/group/A0A8C2QPU7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPU7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPU7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 159, "end_pos": 161 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2QPV4-1", "uniprot_ac": "A0A8C2QPV4", "uniprot_id": "A0A8C2QPV4_CRIGR", "mass": { "chemical_mass": 44251.0, "monoisotopic_mass": 44251.0 }, "refseq": { "ac": "XP_035300114", "name": "serpin E3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300114" }, "gene_names": [ { "name": "Serpine3", "type": "recommended", "evidence": [ { "id": "A0A8C2QPV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4" } ] }, { "name": "Serpine3", "type": "synonym", "evidence": [ { "id": "XP_035300114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300114" } ] } ], "protein_names": [ { "name": "Serpin E3", "type": "synonym", "evidence": [ { "id": "A0A8C2QPV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4/entry#names_and_taxonomy" } ] }, { "name": "serpin E3", "type": "synonym", "evidence": [ { "id": "XP_035300114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300114" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613673.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300114", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300114" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Serpine3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4", "locus": {} } ], "crossref": [ { "id": "100758722", "url": "https://www.ncbi.nlm.nih.gov/gene/100758722", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758722", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758722", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KGNCISY", "url": "https://omabrowser.org/oma/group/KGNCISY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QPV4", "url": "https://www.orthodb.org/?gene=A0A8C2QPV4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300114", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300114", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QPV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QPV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPLLLVTLFLVSSSFSAGGGSPLTEALWLLKTEFALHLYRSAAAQRNGTNFVISPASVSLSLEILQFGARGNTGWQLASALGYTVQDPRVREFLHSVYTTLHNSSQGIGMELACTLFIHTGASLSPCFVQQVSRWANSSLEPADFGEPNRTTMDVSKGTPRQSMGEGPGSPLWGQAGALSTQLSIMGTMTFQSTWQRRFSSMASQPLPFTCAQGLVLQVPAMHQVTEVSYGQFQDAAGHKVNVLELLYLGRVASLFLVLPQNKDTPLDLIEPHLTARVIHLWATRLKRTRMDVFLPRFRIQNQFDLKSILRSWGITDLFDPLKANLKGISGQDGFYVSEATHKAKMELSEEGTKSSAATAVLLLRRSRTPAFKADRPFIFLLREHSTGFVFSIGRLSNPLD", "length": 402, "header": "tr|A0A8C2QPV4-1|A0A8C2QPV4_CRIGR Isoform 1 of Serpin E3 OS=Cricetulus griseus OX=10029 GN=Serpine3 PE=3 SV=1 CANONICAL=A0A8C2QPV4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QPV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4/entry", "sequence": { "sequence": "MLPLLLVTLFLVSSSFSAGGGSPLTEALWLLKTEFALHLYRSAAAQRNGTNFVISPASVSLSLEILQFGARGNTGWQLASALGYTVQDPRVREFLHSVYTTLHNSSQGIGMELACTLFIHTGASLSPCFVQQVSRWANSSLEPADFGEPNRTTMDVSKGTPRQSMGEGPGSPLWGQAGALSTQLSIMGTMTFQSTWQRRFSSMASQPLPFTCAQGLVLQVPAMHQVTEVSYGQFQDAAGHKVNVLELLYLGRVASLFLVLPQNKDTPLDLIEPHLTARVIHLWATRLKRTRMDVFLPRFRIQNQFDLKSILRSWGITDLFDPLKANLKGISGQDGFYVSEATHKAKMELSEEGTKSSAATAVLLLRRSRTPAFKADRPFIFLLREHSTGFVFSIGRLSNPLD", "length": 402, "header": "tr|A0A8C2QPV4-1|A0A8C2QPV4_CRIGR Isoform 1 of Serpin E3 OS=Cricetulus griseus OX=10029 GN=Serpine3 PE=3 SV=1 CANONICAL=A0A8C2QPV4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758722", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758722", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X7M1-1", "protein_name": "Serpin family E member 3", "gene_name": "SERPINE3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPIVFFALILTRCLAKGNCVSYDELKDLKIEFAINLYRHASEVENRTNLVISPASVAISLELLQFGAQGNTSMELQNALGYNIRDQSVQDMLHKVYEGAADSGQGAVVQLACSLFTHTGVQLSPRFAARVAHWANSSLQQADFTNPNQTAAQIQGWITGNLADRDVHGVPSEEAVSPLSRVAVVSTMYFKSTWLKKFSFTDTQILPFTTAESSTLKVPTMHHTAEVNYGQFQTATQDAFSVIELPYLGEKLSMFIVLPSHKRTPLSHIESHLSAKTIALWSSSLKRMKMDIFLPRFSIQSLFDLKTVFSALGIRDAFDPITANFKGISEQAGLYISEAIHKAKIEVTEDGTKASGATAMVLLKRSRTPIFKADRPFTFFLRQANTGSVLFIGRVTNPS", "length": 399 }, "evidence": [ { "id": "A0A8C2QPV4", "url": "https://omabrowser.org/oma/group/A0A8C2QPV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6QQ92-1", "protein_name": "Serpin E3", "gene_name": "SERPINE3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLLLALLLLPVCSPGGASNLHEDLTLLRTDLALRLYRSVAAAGNQTNLVLSPAGAFIPLELLQFGARGNTGRQLAQALGYTVHDPKVREWLQTVYAVLPSTNPGAKLELACTLYVQTGTPLAPCFVEQVSRWANSSLELANFREPNSTAMLANGWGPRQTAGDEPVGSAWERGGGAESAQLVLVSTVSFQSAWRHQFSSDTQLLPFTCAQGLTLEVPMMYQMAEVNFGQFQDPAGHQVGVLELPYLGNVASLLLVLPRDRDTPLSHIEPHLTASLLHAWTASLKRARMEVFLPRFRIQNHFDLKNILYSWGVIDLFDPLRANLKGISGQDGFYVSEAIHKAKIEVSEEGTKASAATALLLLKRSRIPIFKADRPFIFFLREPNTAFVFSIGRVLNPLH", "length": 400 }, "evidence": [ { "id": "A0A8C2QPV4", "url": "https://omabrowser.org/oma/group/A0A8C2QPV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A8MV23-1", "protein_name": "Serpin E3", "gene_name": "SERPINE3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPFLITLFLFHSCCLRANGHLREGMTLLKTEFALHLYQSVAACRNETNFVISPAGVSLPLEILQFGAEGSTGQQLADALGYTVHDKRVKDFLHAVYATLPTSSQGTEMELACSLFVQVGTPLSPCFVEHVSWWANSSLEPADLSEPNSTAIQTSEGASRETAGGGPSEGPGGWPWEQVSAAFAQLVLVSTMSFQGTWRKRFSSTDTQILPFTCAYGLVLQVPMMHQTTEVNYGQFQDTAGHQVGVLELPYLGSAVSLFLVLPRDKDTPLSHIEPHLTASTIHLWTTSLRRARMDVFLPRFRIQNQFNLKSILNSWGVTDLFDPLKANLKGISGQDGFYVSEAIHKAKIEVLEEGTKASGATALLLLKRSRIPIFKADRPFIYFLREPNTGITVFFDRIQIIYQCLSSNKGSFVHYPLKNKHSF", "length": 424 }, "evidence": [ { "id": "A0A8C2QPV4", "url": "https://omabrowser.org/oma/group/A0A8C2QPV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B0UYL8-1", "protein_name": "Probable serpin E3", "gene_name": "serpine3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": 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"MLPLLQVTFFLLSSCFSAGGGSPLSEGLWLLKTEFALHLYRSAAAERNGTNFVISPASVSLSLEILQFGARGNTGWQLAGALGYTVQDPRVKEFLHAVYTTRHNSSQGVGMELACTLFMQTGTSLSPCFVEQVSRWANSSLEAADFSEPNSTTTEASKVTSRQSTGEGPDSPLWGRADALSTQLSIMSTMTFQSTWQKRFSVVLQPLPFTHAHGLVLQVPAMHQVAEVSYGQFQDAAGHEIAVLELLYLGRVASLLLVLPQDKGTPLDHIEPHLTARVLHLWTTRLKRARMDVFLPRFKIQNQFDVKSILRSWGITDLFDPLKANLKGISGQDGFYVSQLTHKAKMELSEEGTRSSAATAVLLLRRSRTSAFKADRPFIFLLREHSTGFVFSIGRVSNPLD", "length": 401 }, "evidence": [ { "id": "A0A8C2QPV4", "url": "https://omabrowser.org/oma/group/A0A8C2QPV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QPV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QPV4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, 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"mass": { "chemical_mass": 16973.0, "monoisotopic_mass": 16973.0 }, "refseq": { "ac": "XP_003509256", "name": "probable inactive ribonuclease-like protein 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509256" }, "gene_names": [ { "name": "Rnase12", "type": "recommended", "evidence": [ { "id": "A0A9J7ET58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58" } ] }, { "name": "Rnase12", "type": "synonym", "evidence": [ { "id": "XP_003509256", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509256" } ] } ], "protein_names": [ { "name": "Probable inactive ribonuclease-like protein 12", "type": "synonym", "evidence": [ { "id": "A0A9J7ET58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58/entry#names_and_taxonomy" } ] }, { "name": "probable inactive ribonuclease-like protein 12", "type": "synonym", "evidence": [ { "id": "XP_003509256", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509256" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614668.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509256", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509256" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ET58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rnase12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58", "locus": {} } ], "crossref": [ { "id": "A0A9J7ET58", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7ET58", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00163", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00163", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755117", "url": "https://www.ncbi.nlm.nih.gov/gene/100755117", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755117", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755117", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7ET58", "url": "https://www.orthodb.org/?gene=A0A9J7ET58", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11437:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11437:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00074", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00074", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509256", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509256", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7ET58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7ET58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALMVVVFLLLLFWENELNEDIMATSLEHFHVDYPQNTVPLRYCNFMIQQRAIREPDYTCKKLHVFIHERPQKINRICASPKKATCTNHTDIFCFQSETRFKLTVCQLTDGTRYPACRYQVSPIEGFILVTCDDLGPVNFQGYVE", "length": 145, "header": "tr|A0A9J7ET58-1|A0A9J7ET58_CRIGR Isoform 1 of Probable inactive ribonuclease-like protein 12 OS=Cricetulus griseus OX=10029 GN=Rnase12 PE=3 SV=1 CANONICAL=A0A9J7ET58-1" }, "isoforms": [ { "isoform_ac": "A0A9J7ET58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58/entry", "sequence": { "sequence": "MALMVVVFLLLLFWENELNEDIMATSLEHFHVDYPQNTVPLRYCNFMIQQRAIREPDYTCKKLHVFIHERPQKINRICASPKKATCTNHTDIFCFQSETRFKLTVCQLTDGTRYPACRYQVSPIEGFILVTCDDLGPVNFQGYVE", "length": 145, "header": "tr|A0A9J7ET58-1|A0A9J7ET58_CRIGR Isoform 1 of Probable inactive ribonuclease-like protein 12 OS=Cricetulus griseus OX=10029 GN=Rnase12 PE=3 SV=1 CANONICAL=A0A9J7ET58-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ET58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ET58" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614515.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007647108.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647108" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Clnk", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3", "locus": {} } ], "crossref": [ { "id": "A0A9J7ETF3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7ETF3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767591", "url": "https://www.ncbi.nlm.nih.gov/gene/100767591", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767591", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767591", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7ETF3", "url": "https://www.orthodb.org/?gene=A0A9J7ETF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14098", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14098", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14098:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14098:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647108", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7ETF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7ETF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEAFNGLHFYSKAMANSTSIPNLSAHACPGSDFHGMGNKRTTKEGFSDLRSQNFSLLKNRSWPRLSSTKGRCRAVLEPLPDHRRNLAAAVDGEKCHSDDDYEDPELQLLKAWPSMKILPARPIQESEYADTRYFKDLMEVPLLLPPKASGPTGKQTRNVGMRRQEEVFYRDKPISKDVRSQHYQGARYSEVNKIPVPPPRPVITLPKKYQPLPPAPPEISAHFPLRHAFPEVQRGLRQISSKDFSEVLGAEEGSHHQAKSRPCHPSQHQSTRKSPPAITSSSYMPAKHSVHVRDHTGTMQHHLPQRCQAASSHSPHDRALPYENTNTEKPGPTKLDEKDVQQNEWYIGEYSRQAVEEVLMRENKDGTFLVRDCSTKSKAEPYVLVVFYGNKVYNVKIRFLESNQQFALGSGLRGNEMFDSVEDIIEHFKYFPIVLIDGKDKAGVRRAQCYLTQPLPLSRHFLTRYSSQALHE", "length": 473, "header": "tr|A0A9J7ETF3-1|A0A9J7ETF3_CRIGR Isoform 1 of Cytokine-dependent hematopoietic cell linker OS=Cricetulus griseus OX=10029 GN=Clnk PE=4 SV=1 CANONICAL=A0A9J7ETF3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7ETF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3/entry", "sequence": { "sequence": "MTEAFNGLHFYSKAMANSTSIPNLSAHACPGSDFHGMGNKRTTKEGFSDLRSQNFSLLKNRSWPRLSSTKGRCRAVLEPLPDHRRNLAAAVDGEKCHSDDDYEDPELQLLKAWPSMKILPARPIQESEYADTRYFKDLMEVPLLLPPKASGPTGKQTRNVGMRRQEEVFYRDKPISKDVRSQHYQGARYSEVNKIPVPPPRPVITLPKKYQPLPPAPPEISAHFPLRHAFPEVQRGLRQISSKDFSEVLGAEEGSHHQAKSRPCHPSQHQSTRKSPPAITSSSYMPAKHSVHVRDHTGTMQHHLPQRCQAASSHSPHDRALPYENTNTEKPGPTKLDEKDVQQNEWYIGEYSRQAVEEVLMRENKDGTFLVRDCSTKSKAEPYVLVVFYGNKVYNVKIRFLESNQQFALGSGLRGNEMFDSVEDIIEHFKYFPIVLIDGKDKAGVRRAQCYLTQPLPLSRHFLTRYSSQALHE", "length": 473, "header": "tr|A0A9J7ETF3-1|A0A9J7ETF3_CRIGR Isoform 1 of Cytokine-dependent hematopoietic cell linker OS=Cricetulus griseus OX=10029 GN=Clnk PE=4 SV=1 CANONICAL=A0A9J7ETF3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767591", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767591", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell surface receptor protein tyrosine kinase signaling pathway", "id": "GO:0007169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007169", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7ETF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETF3" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 346, "end_pos": 456, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 54, "end_pos": 56 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EVZ9-1", "uniprot_ac": "A0A9J7EVZ9", "uniprot_id": "A0A9J7EVZ9_CRIGR", "mass": { "chemical_mass": 185935.0, "monoisotopic_mass": 185935.0 }, "refseq": { "ac": "XP_027242811", "name": "coiled-coil and C2 domain-containing protein 2A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242811" }, "gene_names": [ { "name": "Cc2d2a", "type": "recommended", "evidence": [ { "id": "A0A9J7EVZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9" } ] }, { "name": "Cc2d2a", "type": "synonym", "evidence": [ { "id": "XP_027242811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242811" } ] } ], "protein_names": [ { "name": "Coiled-coil and C2 domain-containing protein 2A isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7EVZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil and C2 domain-containing protein 2A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027242811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242811" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242811", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242811" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cc2d2a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9", "locus": {} } ], "crossref": [ { "id": "100767719", "url": "https://www.ncbi.nlm.nih.gov/gene/100767719", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041510", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041510", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052434", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052434", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056288", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056288", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056290", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056290", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767719", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767719", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EVZ9", "url": "https://www.orthodb.org/?gene=A0A9J7EVZ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20837", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20837", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20837:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20837:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24656", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24656", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027242811", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242811", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7ETU9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7ETU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPKEEEVRIISEEFTGDDVDAEVGRRKKNSKVQRKQKKKKPPTTPPEKMVSDKFQDGGQPEMVEEEPETKLLSLTARRGARSLPPIPSASRTGFAEFSMRERMREKLQAARSKAESALLRDAPTPRPRRLQSPSERETETEFGTEPSKEVGGTQQEDNTQSHSRFKLHDSARKIKSKPQPPPGFPSAEEAYNFFTFNFDPEPEGRTQVKGGDKAHQKDQEGEEGTHAQERTKKMEEEELLNGKDAEDFLLGLASTAHDFVSVRAAEYESVHIRLEKEKEILFTPSRLTVPTYKKLPENVQPRFLEDEGLYIGARPEVARTNENIMENRLLIQEPGRKWFGDDGRILALPSPIKPFPSRPSLATQEQSTKAELETLYKKAVKYVHSRQRMIGSGDPPGNFQLDIDISGLIFSHHPCFSREHVLASKLAQLYDQYLARQQRNKTQFLTDKLQALRKAIQTGLNPEKPHQSLDTTQKTINEYKSEIRQTRKLRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKVDQKADEDEYEAEIQAEIHELLEEHMEEYTRKMEEYRALHQQWKAWRKAQRAKKKKKKQTAEEHPEEEEEAEEPFPEEIKKPIPPELTDPAVIEQQVRERVAHSRRRPGEPTLVPELSLAGNVTPNDQCPRVEVLRREDVRRRSVYLKVVFNSKEVSRTVSRPLGADFRVHFGQIFNLQIFNWPESLMLQVYETIGHSGTILLAEVFLPIPETTIVTGRAPIEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAVGENGIPLIPPLSQQNIGFRSVLKRADAISSIGTSGLTDIKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSEEELNRSKRFRLLRLRSEEVPEFRNYKQIPVYDREIMEKVFQDYEKRLRDRNVIETKDHLDAHRATVAKYLQQVRESVVNRFLIAKHHFLLTDLVVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLCDGDIKLLVNIIRAYDIPVRKPIASKFQQTSRSSRTFSEKQTASPNTHSPVHSTDYPLGQVLVRPFVEVSFQRTICHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQAVKDDVYINIFDEVLHDILEDDRERGSGIHTRIERHWLGCVKIPFSTIYFQARIDGTFKIDIPPVLLGYSKERNITMERTFDSARSLSEGSYITLFITIEPQLVPGEPIREKFDSQEDEKLLQATEKFQAECALRFPQRQCLTTVIDMRGKTVFITRFLKPLNPPQELLNVYPNNPQATAELVARYVSLIPFLPDTVSFAGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLMMGNAIPEGPTAYVLTWEKNYYLIWNPCSGHCYGQFDTFCPLKSVGCLIGPDNIWFNIQHHDSPLRINFDVTKPKLWKSFFSRSLPYPGLSSVQPEELIYQRTDKVAAAELQDRIEKILKDKIMDWRPRHLTRWNRYCTSTLRHFLPLLERSQGEDIEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIEAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLVRNR", "length": 1617, "header": "tr|A0A9J7EVZ9-1|A0A9J7EVZ9_CRIGR Isoform 1 of Coiled-coil and C2 domain-containing protein 2A isoform X1 OS=Cricetulus griseus OX=10029 GN=Cc2d2a PE=4 SV=1 CANONICAL=A0A9J7EVZ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7ETU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETU9/entry", "sequence": { "sequence": "MNPKEEEVRIISEEFTGDDVDAEVGRRKKNSKVQRKQKKKKPPTTPPEKMVSDKFQDGGQPEMVEEEPETKLLSLTARRGARSLPPIPSASRTGFAEFSMRERMREKLQAARSKAESALLRDAPTPRPRRLQSPSERETETEFGTEPSKEVGGTQQEDNTQSHSRFKLHDSARKIKSKPQPPPGFPSAEEAYNFFTFNFDPEPEGRTQVKGGDKAHQKDQEGEEGTHAQERTKKMEEEELLNGKDAEDFLLGLASTAHDFVSVRAAEYESVHIRLEKEKEILFTPSRLTVPTYKKLPENVQPRFLEDEGLYIGARPEVARTNENIMENRLLIQEPGRKWFGDDGRILALPSPIKPFPSRPSLATQEQSTKAELETLYKKAVKYVHSRQRMIGSGDPPGNFQLDIDISGLIFSHHPCFSREHVLASKLAQLYDQYLARQQRNKTQFLTDKLQALRKAIQTGLNPEKPHQSLDTTQKTINEYKSEIRQTRKLRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKVDQKADEDEYEAEIQAEIHELLEEHMEEYTRKMEEYRALHQQWKAWRKAQRAKKKKKKQTAEEHPEEEEEAEEPFPEEIKKPIPPELTDPAVIEQQVRERVAHSRRRPGEPTLVPELSLAGNVTPNDQCPRVEVLRREDVRRRSVYLKVVFNSKEVSRTVSRPLGADFRVHFGQIFNLQIFNWPESLMLQVYETIGHSGTILLAEVFLPIPETTIVTGRAPIEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAVGENGIPLIPPLSQQNIGFRSVLKRADAISSIGTSGLTDIKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSEEELNRSKRFRLLRLRSEEVPEFRNYKQIPVYDREIMEKVFQDYEKRLRDRNVIETKDHLDAHRATVAKYLQQVRESVVNRFLIAKHHFLLTDLVVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLCDGDIKLLVNIIRAYDIPVRKPIASKFQQTSRSSRTFSEKQTASPNTHSPVHSTDYPLGQVLVRPFVEVSFQRTICHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQAVKDDVYINIFDEVLHDILEDDRERGSGIHTRIERHWLGCVKIPFSTIYFQARIDGTFKIDIPPVLLGYSKERNITMERTFDSARSLSEGSYITLFITIEPQLVPGEPIREKELVARYVSLIPFLPDTVSFAGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLMMGNAIPEGPTAYVLTWEKNYYLIWNPCSGHCYGQFDTFCPLKSVGCLIGPDNIWFNIQHHDSPLRINFDVTKPKLWKSFFSRSLPYPGLSSVQPEELIYQRTDKVAAAELQDRIEKILKDKIMDWRPRHLTRWNRYCTSTLRHFLPLLERSQGEDIEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIEAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLVRNR", "length": 1549, "header": "tr|A0A9J7ETU9-1|A0A9J7EVZ9_CRIGR Computationally mapped isoform of Coiled-coil and C2 domain-containing protein 2A isoform X1 OS=Cricetulus griseus OX=10029 GN=Cc2d2a PE=4 SV=1 CANONICAL=A0A9J7EVZ9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EVZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9/entry", "sequence": { "sequence": "MNPKEEEVRIISEEFTGDDVDAEVGRRKKNSKVQRKQKKKKPPTTPPEKMVSDKFQDGGQPEMVEEEPETKLLSLTARRGARSLPPIPSASRTGFAEFSMRERMREKLQAARSKAESALLRDAPTPRPRRLQSPSERETETEFGTEPSKEVGGTQQEDNTQSHSRFKLHDSARKIKSKPQPPPGFPSAEEAYNFFTFNFDPEPEGRTQVKGGDKAHQKDQEGEEGTHAQERTKKMEEEELLNGKDAEDFLLGLASTAHDFVSVRAAEYESVHIRLEKEKEILFTPSRLTVPTYKKLPENVQPRFLEDEGLYIGARPEVARTNENIMENRLLIQEPGRKWFGDDGRILALPSPIKPFPSRPSLATQEQSTKAELETLYKKAVKYVHSRQRMIGSGDPPGNFQLDIDISGLIFSHHPCFSREHVLASKLAQLYDQYLARQQRNKTQFLTDKLQALRKAIQTGLNPEKPHQSLDTTQKTINEYKSEIRQTRKLRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKVDQKADEDEYEAEIQAEIHELLEEHMEEYTRKMEEYRALHQQWKAWRKAQRAKKKKKKQTAEEHPEEEEEAEEPFPEEIKKPIPPELTDPAVIEQQVRERVAHSRRRPGEPTLVPELSLAGNVTPNDQCPRVEVLRREDVRRRSVYLKVVFNSKEVSRTVSRPLGADFRVHFGQIFNLQIFNWPESLMLQVYETIGHSGTILLAEVFLPIPETTIVTGRAPIEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAVGENGIPLIPPLSQQNIGFRSVLKRADAISSIGTSGLTDIKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSEEELNRSKRFRLLRLRSEEVPEFRNYKQIPVYDREIMEKVFQDYEKRLRDRNVIETKDHLDAHRATVAKYLQQVRESVVNRFLIAKHHFLLTDLVVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLCDGDIKLLVNIIRAYDIPVRKPIASKFQQTSRSSRTFSEKQTASPNTHSPVHSTDYPLGQVLVRPFVEVSFQRTICHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQAVKDDVYINIFDEVLHDILEDDRERGSGIHTRIERHWLGCVKIPFSTIYFQARIDGTFKIDIPPVLLGYSKERNITMERTFDSARSLSEGSYITLFITIEPQLVPGEPIREKFDSQEDEKLLQATEKFQAECALRFPQRQCLTTVIDMRGKTVFITRFLKPLNPPQELLNVYPNNPQATAELVARYVSLIPFLPDTVSFAGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLMMGNAIPEGPTAYVLTWEKNYYLIWNPCSGHCYGQFDTFCPLKSVGCLIGPDNIWFNIQHHDSPLRINFDVTKPKLWKSFFSRSLPYPGLSSVQPEELIYQRTDKVAAAELQDRIEKILKDKIMDWRPRHLTRWNRYCTSTLRHFLPLLERSQGEDIEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIEAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLVRNR", "length": 1617, "header": "tr|A0A9J7EVZ9-1|A0A9J7EVZ9_CRIGR Isoform 1 of Coiled-coil and C2 domain-containing protein 2A isoform X1 OS=Cricetulus griseus OX=10029 GN=Cc2d2a PE=4 SV=1 CANONICAL=A0A9J7EVZ9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZI6/entry", "sequence": { "sequence": "MVSDKFQDGGQPEMVEEEPETKLLSLTARRGARSLPPIPSASRTGFAEFSMRERMREKLQAARSKAESALLRDAPTPRPRRLQSPSERETETEFGTEPSKEVGGTQQEDNTQSHSRFKLHDSARKIKSKPQPPPGFPSAEEAYNFFTFNFDPEPEGRTQVKGGDKAHQKDQEGEEGTHAQERTKKMEEEELLNGKDAEDFLLGLASTAHDFVSVRAAEYESVHIRLEKEKEILFTPSRLTVPTYKKLPENVQPRFLEDEGLYIGARPEVARTNENIMENRLLIQEPGRKWFGDDGRILALPSPIKPFPSRPSLATQEQSTKAELETLYKKAVKYVHSRQRMIGSGDPPGNFQLDIDISGLIFSHHPCFSREHVLASKLAQLYDQYLARQQRNKTQFLTDKLQALRKAIQTGLNPEKPHQSLDTTQKTINEYKSEIRQTRKLRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKVDQKADEDEYEAEIQAEIHELLEEHMEEYTRKMEEYRALHQQWKAWRKAQRAKKKKKKQTAEEHPEEEEEAEEPFPEEIKKPIPPELTDPAVIEQQVRERVAHSRRRPGEPTLVPELSLAGNVTPNDQCPRVEVLRREDVRRRSVYLKVVFNSKEVSRTVSRPLGADFRVHFGQIFNLQIFNWPESLMLQVYETIGHSGTILLAEVFLPIPETTIVTGRAPIEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAVGENGIPLIPPLSQQNIGFRSVLKRADAISSIGTSGLTDIKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSEEELNRSKRFRLLRLRSEEVPEFRNYKQIPVYDREIMEKVFQDYEKRLRDRNVIETKDHLDAHRATVAKYLQQVRESVVNRFLIAKHHFLLTDLVVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLCDGDIKLLVNIIRAYDIPVRKPIASKFQQTSRSSRTFSEKQTASPNTHSPVHSTDYPLGQVLVRPFVEVSFQRTICHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQAVKDDVYINIFDEVLHDILEDDRERGSGIHTRIERHWLGCVKIPFSTIYFQARIDGTFKIDIPPVLLGYSKERNITMERTFDSARSLSEGSYITLFITIEPQLVPGEPIREKFDSQEDEKLLQATEKFQAECALRFPQRQCLTTVIDMRGKTVFITRFLKPLNPPQELLNVYPNNPQATAELVARYVSLIPFLPDTVSFAGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLMMGNAIPEGPTAYVLTWEKNYYLIWNPCSGHCYGQFDTFCPLKSVGCLIGPDNIWFNIQHHDSPLRINFDVTKPKLWKSFFSRSLPYPGLSSVQPEELIYQRTDKVAAAELQDRIEKILKDKIMDWRPRHLTRWNRYCTSTLRHFLPLLERSQGEDIEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIEAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLVRNR", "length": 1568, "header": "tr|A0A9J7EZI6-1|A0A9J7EZI6_CRIGR Computationally mapped isoform of Coiled-coil and C2 domain-containing protein 2A isoform X3 OS=Cricetulus griseus OX=10029 GN=Cc2d2a PE=4 SV=1 CANONICAL=A0A9J7EVZ9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBZ3/entry", "sequence": { "sequence": "MNPKEEEVRIISEEFTGDDVDAEVGRRKKNSKVQRKQKKKKPPTTPPEKMVSDKFQDGGQPEMVEEEPETKLLSLTARRGARSLPPIPSASRTGFAEFSMRERMREKLQAARSKAESALLRDAPTPRPRRLQSPSERETETEFGTEPSKEVGGTQQEDNTQSHSRFKLHDSARKIKSKPQPPPGFPSAEEAYNFFTFNFDPEPEGRTQVKGGDKAHQKDQEGEEGTHAQERTKKMEEEELLNGKDAEDFLLGLASTAHDFVSVRAAEYESVHIRLEKEKEILFTPSRLTVPTYKKLPENVQPRFLEDEGLYIGARPEVARTNENIMENRLLIQEPGRKWFGDDGRILALPSPIKPFPSRPSLATQEQSTKAELETLYKKAVKYVHSRQRMIGSGDPPGNFQLDIDISGLIFSHHPCFSREHVLASKLAQLYDQYLARQQRNKTQFLTDKLQALRKAIQTGLNPEKPHQSLDTTQKTINEYKSEIRQTRKLRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKVDQKADEDEYEAEIQAEIHELLEEHMEEYTRKMEEYRALHQQWKAWRKAQRAKKKKKKQTAEEHPEEEEEAEEPFPEEIKKPIPPELTDPAVIEQQVRERVAHSRRRPGEPTLVPELSLAGNVTPNDQCPRVEVLRREDVRRRSVYLKVVFNSKEVSRTVSRPLGADFRVHFGQIFNLQIFNWPESLMLQVYETIGHSGTILLAEVFLPIPETTIVTGRAPIEEVEFSSNQHVTLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAVGENGIPLIPPLSQQNIGFRSVLKRADAISSIGTSGLTDIKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSEEELNRSKRFRLLRLRSEEVPEFRNYKQIPVYDREIMEKVFQDYEKRLRDRNVIETKDHLDAHRATVAKYLQQVRESVVNRFLIAKHHFLLTDLVVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLCDGDIKLLVNIIRAYDIPVRKPIASKFQQTSRSSRTFSEKQTASPNTHSPVHSTDYPLGQVLVRPFVEVSFQRTICHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQAVKDDVYINIFDEVLHDILEDDRERGSGIHTRIERHWLGCVKIPFSTIYFQARIDGTFKIDIPPVLLGYSKERNITMERTFDSARSLSEGSYITLFITIEPQLVPGEPIREKFDSQEDEKLLQATEKFQAECALRFPQRQCLTTVIDMRGKTVFITRFLKPLNPPQELLNVYPNNPQATAELVARYVSLIPFLPDTVSFAGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLMMGNAIPEGPTAYVLTWEKNYYLIWNPCSGHCYGQFDTFCPLKSVGCLIGPDNPEELIYQRTDKVAAAELQDRIEKILKDKIMDWRPRHLTRWNRYCTSTLRHFLPLLERSQGEDIEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIEAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLVRNR", "length": 1576, "header": "tr|A0A9J7HBZ3-1|A0A9J7HBZ3_CRIGR Computationally mapped isoform of Coiled-coil and C2 domain-containing protein 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Cc2d2a PE=4 SV=1 CANONICAL=A0A9J7EVZ9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1393, "start_aa": "Thr", "end_pos": 1393, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1393", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETU9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETU9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7ETU9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7ETU9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767719", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767719", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9" } ], "pmid": "" }, { "name": "protein localization to ciliary transition zone", "id": "GO:1904491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904491", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1000, "end_pos": 1002, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1216, "end_pos": 1218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 656, "end_pos": 658, "annotation": "n_glycosylation_sequon" }, { "start_pos": 903, "end_pos": 905, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EVZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVZ9" }, { "id": "SM00239", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00239" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 1039, "end_pos": 1199, "start_aa": "Lys", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1393 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1000, "end_pos": 1002 }, { "start_pos": 1216, "end_pos": 1218 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 656, "end_pos": 658 }, { "start_pos": 903, "end_pos": 905 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 16% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614173.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_003614720.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509557" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F039", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F039" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cfap70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F039", "locus": {} } ], "crossref": [ { "id": "A0A9J7F039", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F039", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762746", "url": "https://www.ncbi.nlm.nih.gov/gene/100762746", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", 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"length": 1142, "header": "tr|A0A9J7F039-1|A0A9J7F039_CRIGR Isoform 1 of Cilia- and flagella-associated protein 70 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cfap70 PE=4 SV=1 CANONICAL=A0A9J7F039-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EUN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EUN1/entry", "sequence": { "sequence": 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"length": 1121, "header": "tr|A0A9J7EUN1-1|A0A9J7F039_CRIGR Computationally mapped isoform of Cilia- and flagella-associated protein 70 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cfap70 PE=4 SV=1 CANONICAL=A0A9J7F039-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZP0/entry", "sequence": { "sequence": "MEQVSSTSKTVHISVTNGYDLKGFKGDTPVTFVRAEFNQTVLGDSPKITVSPEGTAKYNFTSSFELNPDGGITLDDLAHKPLFLTVTEVLPKEKKQKEEKTLTLGQAVVDLLPLLEGEESFETVVPLHPVQGSPLETPSPVSKQCSLDVKVFVAEPLLTPAQVSASNLLKVTLEAAYSVPESFMPVGPQQNYMVGLQVPSVGEKDYPMVFKNGNLKLGGEKEPVPRPKKWPIPNILAPGANNIPDAFIVGGPYEEEEGELNHPEDRDFRNQAESIKKRIVWDLESRCYLDPSAVASFQKRVADCRLWPVEITRVPLVAVPKGKAGKLEKTEDENQLSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLDSTVFEKTKCLFSIFRDTGHHLAHNNKAGGLNSPLSKPVSKNLKEEKQPVKDKEADGRARPGDLQAPSIKSQSSDTPLEGEATLSHNLEGQQYLEAGTYIVLEIQLDKALVPKRMPEDLARRVKEMIPPRPPLTRRTGGAQKAVSDYHTQIKSISRAILEEYHRMFGKQVTKAGNDVDSETLEEQKCQLNYELNCSGKYFAFKEQLKHAVVKIVREKYLKTTAFESQEELQTFISELYVFLVDQMHVALNQSMPDETQGTASTIHNSSEQLRLFAFEAEVNENYEMAAVYYEERLVREPQNLDHWLDYGAFCLLTKDITKAQECFRKALSLNENHIHSLLLCGVLAILLENYEQAEIFFEDATCLEPTNVVAWTLLGAKPRSFHQLSPHPNARMHPQSQGPSTVLSSLDEFIEETSKPHSESQEPIMTLQPLEPPLTQKSSNLLLKEETSKKETSKGLDSSAFLHSSPYATSQAPATIFMETIRFLMKVNAVQFVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKTEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKACYERTVSFVVDASEMHFIFLRLGQIYLEEKEYEKAKTTYMQVCKRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNYNAEVWAYLALVCLKVGRQLEAEQAYKYTLKLKLKNEALLAEINSVQEMVGFGDPSF", "length": 1071, "header": "tr|A0A9J7EZP0-1|A0A9J7EZP0_CRIGR Computationally mapped isoform of Cilia- and flagella-associated protein 70 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cfap70 PE=4 SV=1 CANONICAL=A0A9J7F039-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F039-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F039/entry", "sequence": { "sequence": "MEQVSSTSKTVHISVTNGYDLKGFKGDTPVTFVRAEFNQTVLGDSPKITVSPEGTAKYNFTSSFELNPDGGITLDDLAHKPLFLTVTEVLPKEKKQKEEKTLTLGQAVVDLLPLLEGEESFETVVPLHPVQGSPLETPSPVSKQCSLDVKVFVAEPLLTPAQVSASNLLKVTLEAAYSVPESFMPVGPQQNYMVGLQVPSVGEKDYPMVFKNGNLKLGGEKEPVPRPKKWPIPNILAPGANNIPDAFIVGGPYEEEEGELNHPEDRDFRNQAESIKKRIVWDLESRCYLDPSAVASFQKRVADCRLWPVEITRVPLVAVPKGKAGKLEKTEDENQLSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLDSTVFEKTKCLFSIFRDTGHHLAHNNKAGGLNSPLSKPVSKNLKEEKQPVKDKEADGRARPGDLQAPSIKSQSSDTPLEGEATLSHNLEGQQYLEAGTYIVLEIQLDKALVPKRMPEDLARRVKEMIPPRPPLTRRTGGAQKAVSDYHTQIKSISRAILEEYHRMFGKQVTKAGNDVDSETLEEQKCQLNYELNCSGKYFAFKEQLKHAVVKIVREKYLKTTAFESQEELQTFISELYVFLVDQMHVALNQSMPDETQGTASTIHNSSEQLRLFAFEAEVNENYEMAAVYYEERLVREPQNLDHWLDYGAFCLLTKDITKAQECFRKALSLNENHIHSLLLCGVLAILLENYEQAEIFFEDATCLEPTNVVAWTLLGLFYEIQNNDIRMEMAFHEASKQLQARALQTKLKSAGTIENVDDGVKIEQSFGPWGTIHDSASALKSEGLTGAKPRSFHQLSPHPNARMHPQSQGPSTVLSSLDEFIEETSKPHSESQEPIMTLQPLEPPLTQKSSNLLLKEETSKKETSKGLDSSAFLHSSPYATSQAPATIFMETIRFLMKVNAVQFVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKTEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKACYERTVSFVVDASEMHFIFLRLGQIYLEEKEYEKAKTTYMQVCKRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNYNAEVWAYLALVCLKVGRQLEAEQAYKYTLKLKLKNEALLAEINSVQEMVGFGDPSF", "length": 1142, "header": "tr|A0A9J7F039-1|A0A9J7F039_CRIGR Isoform 1 of Cilia- and flagella-associated protein 70 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cfap70 PE=4 SV=1 CANONICAL=A0A9J7F039-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751943", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751943", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EV84", "url": "https://www.orthodb.org/?gene=A0A9J7EV84", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243166", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243166", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EV84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EV84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQSCPWPMGCPGSSYRTVVRPTYKVMYKTVTAREWRCCPGHSGVTCEEGSPGFLEPTWSGSTMRRMALPRPTAFSGCLNCSKVSELTERLKVLEAKVAVLSVTEQTVSSIPATSEDSALLWGSPAAQGSPGDGGLQDRADPWELPEPTGPKGDTGSQGPVRMRGPPGPQGPPGRPGQTGAAGIPGEIGPPGPPGPPGPPGPPAPVGPPHAHISLHGDPLLSNTFTETGSHWPQGPTGPPGPPGPPGPMGPPGLPGPTGAPGSPGHMGSPGPSGPKGTSGHPGEKGERGLPGEPGPQGFMGLPGDPGPKGDPGEKSHWAPSLQSFLQQQAQLELLARRVTLLEAIIWPEPELGSGVGPDGTGTPSLLRGKRGGHPTNYQIVTPRRRNGRS", "length": 447, "header": "tr|A0A9J7EV84-1|A0A9J7EV84_CRIGR Isoform 1 of EMI domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Emid1 PE=4 SV=1 CANONICAL=A0A9J7EV84-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EV84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV84/entry", "sequence": { "sequence": "MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQSCPWPMGCPGSSYRTVVRPTYKVMYKTVTAREWRCCPGHSGVTCEEGSPGFLEPTWSGSTMRRMALPRPTAFSGCLNCSKVSELTERLKVLEAKVAVLSVTEQTVSSIPATSEDSALLWGSPAAQGSPGDGGLQDRADPWELPEPTGPKGDTGSQGPVRMRGPPGPQGPPGRPGQTGAAGIPGEIGPPGPPGPPGPPGPPAPVGPPHAHISLHGDPLLSNTFTETGSHWPQGPTGPPGPPGPPGPMGPPGLPGPTGAPGSPGHMGSPGPSGPKGTSGHPGEKGERGLPGEPGPQGFMGLPGDPGPKGDPGEKSHWAPSLQSFLQQQAQLELLARRVTLLEAIIWPEPELGSGVGPDGTGTPSLLRGKRGGHPTNYQIVTPRRRNGRS", "length": 447, "header": "tr|A0A9J7EV84-1|A0A9J7EV84_CRIGR Isoform 1 of EMI domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Emid1 PE=4 SV=1 CANONICAL=A0A9J7EV84-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV6/entry", "sequence": { "sequence": "MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQSCPWPMGCPGSSYRTVVRPTYKVMYKTVTAREWRCCPGHSGVTCEEGSPGFLEPTWSGSTMRRMALPRPTAFSGCLNCSKVSELTERLKVLEAKVAVLSVTEQTVSSIPATSEDSALLWGSPAAQGSPGDGGLQDRADPWELPEPTGPKGDTGSQGPVRMRGPPGPQGPPGRPGQTGAAGIPGEIGPPGPPGPPGPPGPPAPVGPPHAHISLHGDPLLSNTFTETGSHWPQGPTGPPGPPGPPGPMGPPGLPGPTGAPGSPGHMGSPGPSGPKGTSGHPGEKGERGLPGEPGPQGFMGLPGDPGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPELGSGVGPDGTGTPSLLRGKRGGHPTNYQIVTPRRRNGRS", "length": 445, "header": "tr|A0A9J7EZV6-1|A0A9J7EZV6_CRIGR Computationally mapped isoform of EMI domain-containing protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Emid1 PE=4 SV=1 CANONICAL=A0A9J7EV84-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC13/entry", "sequence": { "sequence": "MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQSCPWPMGCPGSSYRTVVRPTYKVMYKTVTAREWRCCPGHSGVTCEEGSPGFLEPTWSGSTMRRMALPRPTAFSDRADPWELPEPTGPKGDTGSQGPVRMRGPPGPQGPPGRPGQTGAAGIPGEIGPPGPPGPPGPPGPPAPVGPPHAHISLHGDPLLSNTFTETGSHWPQGPTGPPGPPGPPGPMGPPGLPGPTGAPGSPGHMGSPGPSGPKGTSGHPGEKGERGLPGEPGPQGFMGLPGDPGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPELGSGVGPDGTGTPSLLRGKRGGHPTNYQIVTPRRRNGRS", "length": 384, "header": "tr|A0A9J7HC13-1|A0A9J7HC13_CRIGR Computationally mapped isoform of EMI domain-containing protein 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Emid1 PE=4 SV=1 CANONICAL=A0A9J7EV84-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEB7/entry", "sequence": { "sequence": "MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQSCPWPMGCPGSRTVVRPTYKVMYKTVTAREWRCCPGHSGVTCEEGSPGFLEPTWSGSTMRRMALPRPTAFSGCLNCSKVSELTERLKVLEAKVAVLSVTEQTVSSIPATSEDSALLWGSPAAQGSPGDGGLQDRADPWELPEPTGPKGDTGSQGPVRMRGPPGPQGPPGRPGQTGAAGIPGEIGPPGPPGPPGPPGPPAPVGPPHAHISLHGDPLLSNTFTETGSHWPQGPTGPPGPPGPPGPMGPPGLPGPTGAPGSPGHMGSPGPSGPKGTSGHPGEKGERGLPGEPGPQGFMGLPGDPGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPELGSGVGPDGTGTPSLLRGKRGGHPTNYQIVTPRRRNGRS", "length": 443, "header": "tr|A0A9J7HEB7-1|A0A9J7HEB7_CRIGR Computationally mapped isoform of EMI domain-containing protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Emid1 PE=4 SV=1 CANONICAL=A0A9J7EV84-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 294, "start_aa": "Thr", "end_pos": 294, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr294", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 315, "start_aa": "Thr", "end_pos": 315, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr315", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV84" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV84" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751943", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751943", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EV84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EV84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EV84" }, { "id": "PS51041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EMI", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 106, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 294, 315 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EVA1-1", "uniprot_ac": "A0A9J7EVA1", "uniprot_id": "A0A9J7EVA1_CRIGR", "mass": { "chemical_mass": 61408.0, "monoisotopic_mass": 61408.0 }, "refseq": { "ac": "XP_027243214", "name": "transmembrane protein 151B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243214" }, "gene_names": [ { "name": "Tmem151b", "type": "recommended", "evidence": [ { "id": "A0A9J7EVA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1" } ] }, { "name": "Tmem151b", "type": "synonym", "evidence": [ { "id": "XP_027243214", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243214" } ] } ], "protein_names": [ { "name": "Transmembrane protein 151B isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7EVA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 151B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027243214", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243214" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243214", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243214" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem151b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1", "locus": {} } ], "crossref": [ { "id": "A0A9J7EVA1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EVA1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757694", "url": "https://www.ncbi.nlm.nih.gov/gene/100757694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757694", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EVA1", "url": "https://www.orthodb.org/?gene=A0A9J7EVA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31893", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31893", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31893:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31893:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243214", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243214", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EVA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPPGSAAGESAGGGGGGGGSGVPEEPMAAADEGPAREEQRPIQPSFTKSLCRESHWKCLLLSLLMYGCLGAVAWCHVTTVTRLTFSSAYQGNSLMYHDSPCSNGYVYIPLAFLLMLYAVYLVECWHCQARHELQHRVDVSSVRERVGRMQQATPCIWWKAISYHYVRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYARCGVRDVSKALVGLEGAPATRLRFTKCFSFASVEAENAYLCQRARFFAENEGLDDYMEAREGMHLKNVDFREFMVAFPDPTRPPWYACSSAFWAAALLTLSWPLRVLAEYRTAYAHYHVEKLFGLEGPGSASSAGGGLSPSDELLPPLTHRLPRVNTVDSTELEWHIRSNQQLVPSYSEAVLMDLAGLGARCGGAGGGGYAPTCRYGGVGGPGAAGVAPYRRSCEHCQRAVSSSSIFSRSALSICASPRAGQGPGAGAGCGGSRFSLGRLYGSRRSCLWRSRSGSVNEASCPTEQTRLSSQASMRDDEDEDDEEEAGPPPPYHDALYFPVLIVHRQEGCLGHSHRPLHRHGSCVETSL", "length": 562, "header": "tr|A0A9J7EVA1-1|A0A9J7EVA1_CRIGR Isoform 1 of Transmembrane protein 151B isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem151b PE=3 SV=1 CANONICAL=A0A9J7EVA1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EVA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1/entry", "sequence": { "sequence": "MSPPGSAAGESAGGGGGGGGSGVPEEPMAAADEGPAREEQRPIQPSFTKSLCRESHWKCLLLSLLMYGCLGAVAWCHVTTVTRLTFSSAYQGNSLMYHDSPCSNGYVYIPLAFLLMLYAVYLVECWHCQARHELQHRVDVSSVRERVGRMQQATPCIWWKAISYHYVRRTRQVTRYRNGDAYTTTQVYHERVNTHVAEAEFDYARCGVRDVSKALVGLEGAPATRLRFTKCFSFASVEAENAYLCQRARFFAENEGLDDYMEAREGMHLKNVDFREFMVAFPDPTRPPWYACSSAFWAAALLTLSWPLRVLAEYRTAYAHYHVEKLFGLEGPGSASSAGGGLSPSDELLPPLTHRLPRVNTVDSTELEWHIRSNQQLVPSYSEAVLMDLAGLGARCGGAGGGGYAPTCRYGGVGGPGAAGVAPYRRSCEHCQRAVSSSSIFSRSALSICASPRAGQGPGAGAGCGGSRFSLGRLYGSRRSCLWRSRSGSVNEASCPTEQTRLSSQASMRDDEDEDDEEEAGPPPPYHDALYFPVLIVHRQEGCLGHSHRPLHRHGSCVETSL", "length": 562, "header": "tr|A0A9J7EVA1-1|A0A9J7EVA1_CRIGR Isoform 1 of Transmembrane protein 151B isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem151b PE=3 SV=1 CANONICAL=A0A9J7EVA1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757694", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757694", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVA1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVA1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F0B9-1", "uniprot_ac": "A0A9J7F0B9", "uniprot_id": "A0A9J7F0B9_CRIGR", "mass": { "chemical_mass": 39487.0, "monoisotopic_mass": 39487.0 }, "refseq": { "ac": "XP_027243575", "name": "glutamate-rich protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243575" }, "gene_names": [ { "name": "Erich1", "type": "recommended", "evidence": [ { "id": "A0A9J7F0B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B9" } ] }, { "name": "Erich1", "type": "synonym", "evidence": [ { "id": "XP_027243575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243575" } ] } ], "protein_names": [ { "name": "Glutamate-rich protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F0B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B9/entry#names_and_taxonomy" } ] }, { "name": "glutamate-rich protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027243575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243575" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243575", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243575" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Erich1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B9", "locus": {} } ], "crossref": [ { "id": "A0A9J7F0B9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F0B9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758343", "url": "https://www.ncbi.nlm.nih.gov/gene/100758343", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758343", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758343", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0B9", "url": "https://www.orthodb.org/?gene=A0A9J7F0B9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22444", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22444", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22444:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22444:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28319", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28319", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243575", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243575", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EVQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCL1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K403", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K403", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K403-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K403-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSTVHIQGLPFLPFRKSSHRQTTLFTEKVLKRLFPNVSSGQDKGTPQTPALETPPKNVTPEAVEHTHGHKLADGDIKIQPERRLYTVSLPPPGYVPSLPEPTSCVNSENASSGGDTEEPDLHDQPKRRRVRRHKSKKNIKNPNDVVIKQAELETQPGLLQEKMHADTPTMSKNKRKKLKKKLQLRRKKAAGLVTKTFGVSFMYQPESSSEADADDVTGGEAEDDQEGSVTDATQEDIELANSKAEGILSFLKSTQEIYFYDDTSEGFDPAVCIETAEELLHLLESRRMPASDVLILDHMKTLLLLQDTERLQSALEMFPEHCAMPPDHAKVISAFFNYWITHILPEKQNSE", "length": 352, "header": "tr|A0A9J7F0B9-1|A0A9J7F0B9_CRIGR Isoform 1 of Glutamate-rich protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Erich1 PE=4 SV=1 CANONICAL=A0A9J7F0B9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EVQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVQ1/entry", "sequence": { "sequence": "MSAHRKHVFTEKVLKRLFPNVSSGQDKGTPQTPALETPPKNVTPEAVEHTHGHKLADGDIKIQPERRLYTVSLPPPGYVPSLPEPTSCVNSENASSGGDTEEPDLHDQPKRRRVRRHKSKKNIKNPNDVVIKQAELETQPGLLQEKMHADTPTMSKNKRKKLKKKLQLRRKKAAGLVTKTFGVSFMYQPESSSEADADDVTGGEAEDDQEGSVTDATQEDIELANSKAEGILSFLKSTQEIYFYDDTSEGFDPAVCIETAEELLHLLESRRMPASDVLILDHMKTLLLLQDTERLQSALEMFPEHCAMPPDHAKVISAFFNYWITHILPEKQNSE", "length": 335, "header": "tr|A0A9J7EVQ1-1|A0A9J7F0B9_CRIGR Computationally mapped isoform of Glutamate-rich protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Erich1 PE=4 SV=1 CANONICAL=A0A9J7F0B9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B9/entry", "sequence": { "sequence": 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"MTSTVHIQGLPFLPFRKSSHRQTTLFTEKVLKRLFPNVSSGQDKGTPQTPALETPPKNVTPEAVEHTHGHKLADGDIKIQPERRLYTVSLPPPGYVPSLPEPTSCVNSENASSGGDTEEPDLHDQPKRRRVRRHKSKKNIKNPNDVVIKQAELETQPGLLQEKMHADTPTMSKNKRKKLKKKLQLRRKKAAGLVTKTFGVSFMYQPESSSEADADDVTGGEAEDDQEGSVTDATQEDIELANSKAEGILSFLKSTQEIYFYDDTSEGFDPAVCIETAEELLHLLESRRMPASDVLILDHMKTLLLLQDTERLQSALEMFPEHCAMPPALIQQLVEVKADTHN", "length": 342, "header": "tr|A0A9J7HCL1-1|A0A9J7HCL1_CRIGR Computationally mapped isoform of Glutamate-rich protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Erich1 PE=4 SV=1 CANONICAL=A0A9J7F0B9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K403-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K403/entry", "sequence": { "sequence": "MTSTVHIQGLPFLPFRKSSHRQTTLFTEKVLKRLFPNVSSGQDKGTPQTPALETPPKNVTPEAVEHTHGHKLADGDIKIQPERRLYTVSLPPPGYVPSLPEPTSCVNSENASSGGDTEEPDLHDQPKRRRVRRHKSKKNIKNPNDVVIKQAELETQPGLLQEKMHADTPTMSKNKRKKLKKKLQLRRKKAAGLVTKTFGVSFMYQPESSSEADADDVTGGEAEDDQEGSVTDATQEDIELANSKAEGILSFLKSTQEIYFYDVLFQLSPGSSLYSVHLITRGMCI", "length": 285, "header": "tr|A0A9J7K403-1|A0A9J7K403_CRIGR Computationally mapped isoform of Glutamate-rich protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Erich1 PE=4 SV=1 CANONICAL=A0A9J7F0B9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243601" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVR2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH13orf46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVR2", "locus": {} } ], "crossref": [ { "id": "A0A9J7EVR2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EVR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751490", "url": "https://www.ncbi.nlm.nih.gov/gene/100751490", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751490", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EVR2", "url": "https://www.orthodb.org/?gene=A0A9J7EVR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39223:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39223:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27972", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27972", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243601", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EVR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKDPTTHRRHRPGPGALPSGVVPGYLKVASEGAELQRSRSVGGLHQKGDPPVCIRKLLRKELDSEDQGKDPRSDTNDTTCQVSLEEDRKKKSQDEPGKVDQTCGKLEPEKSNSEASASEQDGAQKGRHTSVAEEQEPESMKLNNLLEKQKPSVFVEIDLGDHTEEEVVTCAVREEKRPPLDTGDLSEDETRTSWMCCIPYSTKKKVKETANALEKVLKPGRAVKDGTLSS", "length": 231, "header": "tr|A0A9J7EVR2-1|A0A9J7EVR2_CRIGR Isoform 1 of Uncharacterized protein C13orf46 homolog OS=Cricetulus griseus OX=10029 GN=CUNH13orf46 PE=4 SV=1 CANONICAL=A0A9J7EVR2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EVR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVR2/entry", "sequence": { "sequence": "MEKDPTTHRRHRPGPGALPSGVVPGYLKVASEGAELQRSRSVGGLHQKGDPPVCIRKLLRKELDSEDQGKDPRSDTNDTTCQVSLEEDRKKKSQDEPGKVDQTCGKLEPEKSNSEASASEQDGAQKGRHTSVAEEQEPESMKLNNLLEKQKPSVFVEIDLGDHTEEEVVTCAVREEKRPPLDTGDLSEDETRTSWMCCIPYSTKKKVKETANALEKVLKPGRAVKDGTLSS", "length": 231, "header": "tr|A0A9J7EVR2-1|A0A9J7EVR2_CRIGR Isoform 1 of Uncharacterized protein C13orf46 homolog OS=Cricetulus griseus OX=10029 GN=CUNH13orf46 PE=4 SV=1 CANONICAL=A0A9J7EVR2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVR2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVR2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751490", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EVY8-1", "uniprot_ac": "A0A9J7EVY8", "uniprot_id": "A0A9J7EVY8_CRIGR", "mass": { "chemical_mass": 207032.0, "monoisotopic_mass": 207032.0 }, "refseq": { "ac": "XP_027242779", "name": "LOW QUALITY PROTEIN: ligand-dependent nuclear receptor corepressor-like protein isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242779" }, "gene_names": [ { "name": "Lcorl", "type": "recommended", "evidence": [ { "id": "A0A9J7EVY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8" } ] }, { "name": "Lcorl", "type": "synonym", "evidence": [ { "id": "XP_027242779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242779" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: ligand-dependent nuclear receptor corepressor-like protein isoform X7", "type": "synonym", "evidence": [ { "id": "XP_027242779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242779" }, { "id": "A0A9J7EVY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242779" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lcorl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8", "locus": {} } ], "crossref": [ { "id": "100769778", "url": "https://www.ncbi.nlm.nih.gov/gene/100769778", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028104", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028104", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769778", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769778", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EVY8", "url": "https://www.orthodb.org/?gene=A0A9J7EVY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21545", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21545", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21545:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21545:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027242779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242779", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EVY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKGRERMAAAXAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGLYGPRLRRDLSLFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSHTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKIQENRNGSIGASLVYKSIQMNQAENCLQDEQEGPLDLTVTRTQEQTAQQGDGVLDLSTKKTSIKSEESPICDPSSENAVAGSTVDAKSEEATKMEKGKSALSKVLESLCIRHHQQVLAMLKFLVQEQNAASICCCNSSCTMSSESQKSLFEDDLHGLSHSCEYRLAERGCLHNERQSPSLVPLPVCIKELHCLSCQTVTVEHIKTVMNRGVENSYNPHRCCCGQLAENHSTKSNFPSPLSREVCDLSVNLKDGCRSRSPSPPPLSPVETGGFEKWKDIVSEHSALENNKLETSINQPPSLTPAEISIHKCGHDSKINKSKQSSNSDSVLLDASSSYTSNHEKGETAIIFQDLMDRINEKLKSIETTDTSNLIKLSSSDCDSDNDFKLGDLITSLLHSATASDYSFMELLSQHDKKVENKIIQTRFRKRQQTLFAMHNSPDSPVIRRQSLQIKRELASLDENFLKKRHSEKNSRKLSCNDKIPSVNKEFQPCQEPLKNSKSFQDENHAETLSSPNDVAPQLQVTVESSETNVAFDQFSEATSSEKMSQRKSPEKSTTEKLTVQNNRENTKLENTQTLLRTDAPGLLSRTKRNIVPPGWYSIYVTNNSASKKFLEGKRVSDCAHNKDPVRDPTESLQTRDLNKIAMNSNLQVVVERLEDTINMAQRSWTNQALSEGCKAYKKLIETDSKVQNSGAALTCTLSRMASKNQGLSKSLIASSNKRNYGMPIMNLKKKSDNQKTALILERNSLTSSVESVPTKCEGTESSVSNYSSPIKLMFLSEIKSNEGVKYTLTSVSTSQSNAKFASHKHKTHQLTGRKREAKEDIPNTNFDDYSSNHDINYLQSQLNCVQEATPSSAEFPDSLNSNKPQEDPEGKSSGAIDLPYKRKPGRPKKIGPQVVKQIKRPIGRPPKPKAGQTDVSVGQTESFSSGKKNLESLSEVKEGIYRKSIVVTVVYGRSRRTKRCVSEGSMNISNISLNNDAEDFAINSRSLRNTREYETGCGESLSAVSKLTPESEICDSDFEYVRPIKSKSVIPQASKNIIRPNQKPLSIVRKPGRPAKVKISGISVTVSRVSPQQREVCLSSCLPPLEQETMLEKTCREEKLDQQCSKLDKVRHTDVDMFKNESNSTVVSIPPKHSIRARKPSLHFLHSLASSDSLTYKNTLRHKSCKLHLQKGKSPKKKYRQSSLKLASKGIPGSKHSRKAAKCFEDKKLMPISEVSLDPVISSNPLLRWWATSTSNDSLLEELNNRFEQIANAWVQVSRGEAQNSVRRTEFTEDSGFKAASPLETCLLELEVSPVKMLFQKKYNLNELCTWFMQTTETQSLSLVRKANARNPLEVINTKGIKLGVKCCGFNASPFRKHFKKFAVSSPSKSAGKFRILHKMVGSPLLNVKRNLTLARLKRTEFKSLHCERWRREEKPHSHRTVDWNSKRRNLRFFCQNQFFTKTEGEINEETSLSGESTVGNQGASLPETRGDSPRERVAVHDFTTHASLESNVKSETKENGTGCGQINSEKGQGLGNVFSSNWRTETLKDCRIFLRKINCLEQRNTFKLNTVIYSPESVDSGHNQVQEESKRFNLRSHSARQNSFKKQNKERESAKANSPASDKLTDELDSSQISKHVNFDKSPDSSEALSKLNKRKRPPWKTTEMSAKRYKRQSCNNGQMANYCTKS", "length": 1847, "header": "tr|A0A9J7EVY8-1|A0A9J7EVY8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: ligand-dependent nuclear receptor corepressor-like protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Lcorl PE=4 SV=1 CANONICAL=A0A9J7EVY8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EVY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8/entry", "sequence": { "sequence": "MDKGRERMAAAXAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGLYGPRLRRDLSLFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSHTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKIQENRNGSIGASLVYKSIQMNQAENCLQDEQEGPLDLTVTRTQEQTAQQGDGVLDLSTKKTSIKSEESPICDPSSENAVAGSTVDAKSEEATKMEKGKSALSKVLESLCIRHHQQVLAMLKFLVQEQNAASICCCNSSCTMSSESQKSLFEDDLHGLSHSCEYRLAERGCLHNERQSPSLVPLPVCIKELHCLSCQTVTVEHIKTVMNRGVENSYNPHRCCCGQLAENHSTKSNFPSPLSREVCDLSVNLKDGCRSRSPSPPPLSPVETGGFEKWKDIVSEHSALENNKLETSINQPPSLTPAEISIHKCGHDSKINKSKQSSNSDSVLLDASSSYTSNHEKGETAIIFQDLMDRINEKLKSIETTDTSNLIKLSSSDCDSDNDFKLGDLITSLLHSATASDYSFMELLSQHDKKVENKIIQTRFRKRQQTLFAMHNSPDSPVIRRQSLQIKRELASLDENFLKKRHSEKNSRKLSCNDKIPSVNKEFQPCQEPLKNSKSFQDENHAETLSSPNDVAPQLQVTVESSETNVAFDQFSEATSSEKMSQRKSPEKSTTEKLTVQNNRENTKLENTQTLLRTDAPGLLSRTKRNIVPPGWYSIYVTNNSASKKFLEGKRVSDCAHNKDPVRDPTESLQTRDLNKIAMNSNLQVVVERLEDTINMAQRSWTNQALSEGCKAYKKLIETDSKVQNSGAALTCTLSRMASKNQGLSKSLIASSNKRNYGMPIMNLKKKSDNQKTALILERNSLTSSVESVPTKCEGTESSVSNYSSPIKLMFLSEIKSNEGVKYTLTSVSTSQSNAKFASHKHKTHQLTGRKREAKEDIPNTNFDDYSSNHDINYLQSQLNCVQEATPSSAEFPDSLNSNKPQEDPEGKSSGAIDLPYKRKPGRPKKIGPQVVKQIKRPIGRPPKPKAGQTDVSVGQTESFSSGKKNLESLSEVKEGIYRKSIVVTVVYGRSRRTKRCVSEGSMNISNISLNNDAEDFAINSRSLRNTREYETGCGESLSAVSKLTPESEICDSDFEYVRPIKSKSVIPQASKNIIRPNQKPLSIVRKPGRPAKVKISGISVTVSRVSPQQREVCLSSCLPPLEQETMLEKTCREEKLDQQCSKLDKVRHTDVDMFKNESNSTVVSIPPKHSIRARKPSLHFLHSLASSDSLTYKNTLRHKSCKLHLQKGKSPKKKYRQSSLKLASKGIPGSKHSRKAAKCFEDKKLMPISEVSLDPVISSNPLLRWWATSTSNDSLLEELNNRFEQIANAWVQVSRGEAQNSVRRTEFTEDSGFKAASPLETCLLELEVSPVKMLFQKKYNLNELCTWFMQTTETQSLSLVRKANARNPLEVINTKGIKLGVKCCGFNASPFRKHFKKFAVSSPSKSAGKFRILHKMVGSPLLNVKRNLTLARLKRTEFKSLHCERWRREEKPHSHRTVDWNSKRRNLRFFCQNQFFTKTEGEINEETSLSGESTVGNQGASLPETRGDSPRERVAVHDFTTHASLESNVKSETKENGTGCGQINSEKGQGLGNVFSSNWRTETLKDCRIFLRKINCLEQRNTFKLNTVIYSPESVDSGHNQVQEESKRFNLRSHSARQNSFKKQNKERESAKANSPASDKLTDELDSSQISKHVNFDKSPDSSEALSKLNKRKRPPWKTTEMSAKRYKRQSCNNGQMANYCTKS", "length": 1847, "header": "tr|A0A9J7EVY8-1|A0A9J7EVY8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: ligand-dependent nuclear receptor corepressor-like protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Lcorl PE=4 SV=1 CANONICAL=A0A9J7EVY8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1028, "start_aa": "Thr", "end_pos": 1028, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1028", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EVY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVY8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EW10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW10" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EW10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW10" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755497", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755497", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 562, "end_pos": 564, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EW10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW10" }, { "id": "PF11822", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11822" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SANT and BTB", "eco_id": "ECO_0000259", "start_pos": 147, "end_pos": 248, "start_aa": "Met", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 122, "end_pos": 124 }, { "start_pos": 129, "end_pos": 131 }, { "start_pos": 562, "end_pos": 564 }, { "start_pos": 719, "end_pos": 721 } ] }, "class_list": [], "section_stats": [ { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EWB9-1", "uniprot_ac": "A0A9J7EWB9", "uniprot_id": "A0A9J7EWB9_CRIGR", "mass": { "chemical_mass": 216498.0, "monoisotopic_mass": 216498.0 }, "refseq": { "ac": "XP_027243041", "name": "protein PRR14L isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243041" }, "gene_names": [ { "name": "Prr14l", "type": "recommended", "evidence": [ { "id": "A0A9J7EWB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9" } ] }, { "name": "Prr14l", "type": "synonym", "evidence": [ { "id": "XP_027243041", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243041" } ] } ], "protein_names": [ { "name": "Protein PRR14L isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7EWB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9/entry#names_and_taxonomy" } ] }, { "name": "protein PRR14L isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027243041", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243041" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243041", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243041" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prr14l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9", "locus": {} } ], "crossref": [ { "id": "100771689", "url": "https://www.ncbi.nlm.nih.gov/gene/100771689", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771689", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771689", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EWB9", "url": "https://www.orthodb.org/?gene=A0A9J7EWB9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14522", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14522", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14522:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14522:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15386", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15386", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243041", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243041", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EWB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EWB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9P8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9P8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9P8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSSGVETQPAPLDSLMPAVVHELYSELSVSVSKELHAEKEPSMIPDVKPGASSSPRSQSRASPLELQRTHAEGCCEETFETLDYGSKPGWCGLVNPTARGPVAFEILDREERTKSMEPKVFRDQGDQAEVVIGPCEAAKEDPCEHSTASKEKIYPSQDVLLIQSSKKPVFADLSGDLLKNKGNVHNTTGTLPEPIEDIEGNCAISKMNKVKEELCDLNLVCEVEDGHQQILNYDKEKPSSAHDHSTTAASKDSIKPSEENSKILYLTSYLSGPKSLEKCHFEDNDLIKEYAEKIHRVEQSKNFTCGKESKEQYWRPRSERRGLFPSNVRQQEQDGSNEKQVVESSNHSICTIQASSCTENYNSVPNSFSEATETMFKKNDLKITLNIQGNLVYSKDHRKTVTDVNHPEVHFEESSFPLLMNTEEPEQTRIKSSALNEKIYSTDSKSIVSIQRNLDDSLPNKASCSDFLSGRKSLQNLIPADPVSSEYNEMSKPKKDTAKLAPCPEFDCGPASEKHVQTSHDNISHLDEPIIACEMSELSYNSELVSHKIEHECVLNQQVSLNSKEHVTLSTDSLLNLNREMPSATCRDAQQSHHSLKNETNVTTNTQTIPAETKLEAMSPQGDKTCGASSYIHTLNIKIRSPEGQKEMVDSGIKDLHSTFLTSEKKAAGYSFDTECQNVQSQDISSCRCVMRNASEKNMCSVCAALGPKKDILKVSNCKINCGNACQSSSHCFQRPEDFVENSTFLESEPAGRETQSSILGGKLRNELTAGVSDSGALTTTTHASSHMETSEEGLGGKKRGKHKDTAVYTLSTSACDTQELNQSTNIPSPDTLVDQSLTVISSHFKTVFQAAGSLDQKADEVSDCQGNQNSPDKCRSEGKPALEGINSDHRETSPEGSLKEKDLIVGSGSKNPVFCGSLEKKDSKGAFENSPGSKELTHSVLDVVCPDCIGEPTEGVLDMEASSPAGHSTRRDKLAYHETLRSTSSLRELNVVFIGTTDQNSEISNAAASTVDSPEILKSREIKVCRSLKDCEMEECPDSAIDHEVESVADHEPHIRALDRGGVSLNHIHCKHQDKGGSVTEGLGANSEFDEKKIFELSSKDLSSRCRGSVDRHSRMSSEEHLPAGISGKAPKLEHLFKPKDGKMLHENVKDCTVQSDMKEGIPAHISNPSEGDTTYVSVDKNVCKACHSRENSTDKYLPLIMETAIKMDREKGMHALLEQHMSLNMLSDEMQNKKQPVADHDESIIMEEVTLRKPTKKKMARQLQRLEDPKEESLCHLLMKDIELCTGPRLLGTSWKEHDPSSAGGDQIHGAFVTLSYQQRLLPVKKQPHRTCKRISCLEPVTVRRKISKVRNSNCGKSSSNPIPTKAHRLLSPCAVPAAPLEPEAVPSKSLCSHIPKLKATLCHPLRSLSCRKPTKESALLNKLSILASKLVLATKPQKLRYRRYSSSLVPLAKSYKRFRYKKLLDGFSYNAMQLDPYLAATGWDRRSNSKPLALYSLESVKMSFIDLSNKMPSLLFGTEIFPFSFHVKSPSCMVESSRTFPEHCAPSRLALAETSQCSSPPPKWTFSFFMSHGCPGMATFREDTGFCSQTRTQAPPQTTAPLRDYGGTAIVQTRADCSVLGLHTLLALCSPGCYRIWTKKRSFSNHMPTMQRLFLTQFTQGLKGLRSPASLADKVFCSLPYSVGRVLSIWSQHGPSCTFQLPALHSTHSKPQGSLSTLSSHTTIPNVPLPGMEAIHNTNSSHMRLEPVFPALVPKSCLVTEPAVSKLLLSASEFQVPGFDELGDVSVACPRPQSNSAEQKEAEPEKRPKKVSQIRIRKTIPKPDPNLTPMGLPRPKRLKKKEFSLEEIYTNKNYKSPPANRCLETIFEEPKERNGTLISVSQQKRKRVLEFQDFTIPRKRRARGKVKLVGSFTRAQKAALQTRELDALLIQKLLELETFFAKEEEQEQSASC", "length": 1956, "header": "tr|A0A9J7EWB9-1|A0A9J7EWB9_CRIGR Isoform 1 of Protein PRR14L isoform X1 OS=Cricetulus griseus OX=10029 GN=Prr14l PE=4 SV=1 CANONICAL=A0A9J7EWB9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EWB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9/entry", "sequence": { "sequence": "MLSSGVETQPAPLDSLMPAVVHELYSELSVSVSKELHAEKEPSMIPDVKPGASSSPRSQSRASPLELQRTHAEGCCEETFETLDYGSKPGWCGLVNPTARGPVAFEILDREERTKSMEPKVFRDQGDQAEVVIGPCEAAKEDPCEHSTASKEKIYPSQDVLLIQSSKKPVFADLSGDLLKNKGNVHNTTGTLPEPIEDIEGNCAISKMNKVKEELCDLNLVCEVEDGHQQILNYDKEKPSSAHDHSTTAASKDSIKPSEENSKILYLTSYLSGPKSLEKCHFEDNDLIKEYAEKIHRVEQSKNFTCGKESKEQYWRPRSERRGLFPSNVRQQEQDGSNEKQVVESSNHSICTIQASSCTENYNSVPNSFSEATETMFKKNDLKITLNIQGNLVYSKDHRKTVTDVNHPEVHFEESSFPLLMNTEEPEQTRIKSSALNEKIYSTDSKSIVSIQRNLDDSLPNKASCSDFLSGRKSLQNLIPADPVSSEYNEMSKPKKDTAKLAPCPEFDCGPASEKHVQTSHDNISHLDEPIIACEMSELSYNSELVSHKIEHECVLNQQVSLNSKEHVTLSTDSLLNLNREMPSATCRDAQQSHHSLKNETNVTTNTQTIPAETKLEAMSPQGDKTCGASSYIHTLNIKIRSPEGQKEMVDSGIKDLHSTFLTSEKKAAGYSFDTECQNVQSQDISSCRCVMRNASEKNMCSVCAALGPKKDILKVSNCKINCGNACQSSSHCFQRPEDFVENSTFLESEPAGRETQSSILGGKLRNELTAGVSDSGALTTTTHASSHMETSEEGLGGKKRGKHKDTAVYTLSTSACDTQELNQSTNIPSPDTLVDQSLTVISSHFKTVFQAAGSLDQKADEVSDCQGNQNSPDKCRSEGKPALEGINSDHRETSPEGSLKEKDLIVGSGSKNPVFCGSLEKKDSKGAFENSPGSKELTHSVLDVVCPDCIGEPTEGVLDMEASSPAGHSTRRDKLAYHETLRSTSSLRELNVVFIGTTDQNSEISNAAASTVDSPEILKSREIKVCRSLKDCEMEECPDSAIDHEVESVADHEPHIRALDRGGVSLNHIHCKHQDKGGSVTEGLGANSEFDEKKIFELSSKDLSSRCRGSVDRHSRMSSEEHLPAGISGKAPKLEHLFKPKDGKMLHENVKDCTVQSDMKEGIPAHISNPSEGDTTYVSVDKNVCKACHSRENSTDKYLPLIMETAIKMDREKGMHALLEQHMSLNMLSDEMQNKKQPVADHDESIIMEEVTLRKPTKKKMARQLQRLEDPKEESLCHLLMKDIELCTGPRLLGTSWKEHDPSSAGGDQIHGAFVTLSYQQRLLPVKKQPHRTCKRISCLEPVTVRRKISKVRNSNCGKSSSNPIPTKAHRLLSPCAVPAAPLEPEAVPSKSLCSHIPKLKATLCHPLRSLSCRKPTKESALLNKLSILASKLVLATKPQKLRYRRYSSSLVPLAKSYKRFRYKKLLDGFSYNAMQLDPYLAATGWDRRSNSKPLALYSLESVKMSFIDLSNKMPSLLFGTEIFPFSFHVKSPSCMVESSRTFPEHCAPSRLALAETSQCSSPPPKWTFSFFMSHGCPGMATFREDTGFCSQTRTQAPPQTTAPLRDYGGTAIVQTRADCSVLGLHTLLALCSPGCYRIWTKKRSFSNHMPTMQRLFLTQFTQGLKGLRSPASLADKVFCSLPYSVGRVLSIWSQHGPSCTFQLPALHSTHSKPQGSLSTLSSHTTIPNVPLPGMEAIHNTNSSHMRLEPVFPALVPKSCLVTEPAVSKLLLSASEFQVPGFDELGDVSVACPRPQSNSAEQKEAEPEKRPKKVSQIRIRKTIPKPDPNLTPMGLPRPKRLKKKEFSLEEIYTNKNYKSPPANRCLETIFEEPKERNGTLISVSQQKRKRVLEFQDFTIPRKRRARGKVKLVGSFTRAQKAALQTRELDALLIQKLLELETFFAKEEEQEQSASC", "length": 1956, "header": "tr|A0A9J7EWB9-1|A0A9J7EWB9_CRIGR Isoform 1 of Protein PRR14L isoform X1 OS=Cricetulus griseus OX=10029 GN=Prr14l PE=4 SV=1 CANONICAL=A0A9J7EWB9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9P8/entry", "sequence": { "sequence": "MLSSGVETQPAPLDSLMPAVVHELYSELSVSVSKELHAEKEPSMIPDVKPGASSSPRSQSRASPLELQRTHAEGCCEETFETLDYGSKPGWCGLVNPTARGPVAFEILDREERTKSMEPKVFRDQGDQAEVVIGPCEAAKEDPCEHSTASKEKIYPSQDVLLIQSSKKPVFADLSGDLLKNKGNVHNTTGTLPEPIEDIEGNCAISKMNKVKEELCDLNLVCEVEDGHQQILNYDKEKPSSAHDHSTTAASKDSIKPSEENSKILYLTSYLSGPKSLEKCHFEDNDLIKEYAEKIHRVEQSKNFTCGKESKEQYWRPRSERRGLFPSNVRQQEQDGSNEKQVVESSNHSICTIQASSCTENYNSVPNSFSEATETMFKKNDLKITLNIQGNLVYSKDHRKTVTDVNHPEVHFEESSFPLLMNTEEPEQTRIKSSALNEKIYSTDSKSIVSIQRNLDDSLPNKASCSDFLSGRKSLQNLIPADPVSSEYNEMSKPKKDTAKLAPCPEFDCGPASEKHVQTSHDNISHLDEPIIACEMSELSYNSELVSHKIEHECVLNQQVSLNSKEHVTLSTDSLLNLNREMPSATCRDAQQSHHSLKNETNVTTNTQTIPAETKLEAMSPQGDKTCGASSYIHTLNIKIRSPEGQKEMVDSGIKDLHSTFLTSEKKAAGYSFDTECQNVQSQDISSCRCVMRNASEKNMCSVCAALGPKKDILKVSNCKINCGNACQSSSHCFQRPEDFVENSTFLESEPAGRETQSSILGGKLRNELTAGVSDSGALTTTTHASSHMETSEEGLGGKKRGKHKDTAVYTLSTSACDTQELNQSTNIPSPDTLVDQSLTVISSHFKTVFQAAGSLDQKADEVSDCQGNQNSPDKCRSEGKPALEGINSDHRETSPEGSLKEKDLIVGSGSKNPVFCGSLEKKDSKGAFENSPGSKELTHSVLDVVCPDCIGEPTEGVLDMEASSPAGHSTRRDKLAYHETLRSTSSLRELNVVFIGTTDQNSEISNAAASTVDSPEILKSREIKVCRSLKDCEMEECPDSAIDHEVESVADHEPHIRALDRGGVSLNHIHCKHQDKGGSVTEGLGANSEFDEKKIFELSSKDLSSRCRGSVDRHSRMSSEEHLPAGISGKAPKLEHLFKPKDGKMLHENVKDCTVQSDMKEGIPAHISNPSEGDTTYVSVDKNVCKACHSRENSTDKYLPLIMETAIKMDREKGMHALLEQHMSLNMLSDEMQNKKQPVADHDESIIMEEVTLRKPTKKKMARQLQRLEDPKEESLCHLLMKDIELCTGPRLLGTSWKEHDPSSAGGDQIHGAFVTLSYQQRLLPVKKQPHRTCKRISCLEPVTVRRKISKVRNSNCGKSSSNPIPTKAHRLLSPCAVPAAPLEPEAVPSKSLCSHIPKLKATLCHPLRSLSCRKPTKESALLNKLSILASKLVLATKPQKLRYRRYSSSLVPLAKSYKRFRYKKLLDGFSYNAMQLDPYLAATGWDRRSNSKPLALYSLESVKMSFIDLSNKMPSLLFGTEIFPFSFHVKSPSCMVESSRTFPEHCAPSRLALAETSQCSSPPPKWTFSFFMSHGCPGMATFREDTGFCSQTRTQAPPQTTAPLRDYGGTAIVQTRADCSVLGLHTLLALCSPGCYRIWTKKRSFSNHMPTMQRLFLTQFTQGLKGLRSPASLADKVFCSLPYSVGRVLSIWSQHGPSCTFQLPALHSTHSKPQGSLSTLSSHTTIPNVPLPGMEAIHNTNSSHMRLEPVFPALVPKSCLVTEPAVSKLLLSASEFQVPGFDELGDVSVACPRPQSNSAEQKEAEPEKRPKKVSQIRIRKTIPKPDPNLTPMGLPRPKRTTIKDVTFSKPWQ", "length": 1854, "header": "tr|A0A9J7H9P8-1|A0A9J7H9P8_CRIGR Computationally mapped isoform of Protein PRR14L isoform X3 OS=Cricetulus griseus OX=10029 GN=Prr14l PE=4 SV=1 CANONICAL=A0A9J7EWB9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU6/entry", "sequence": { "sequence": "MLSSGVETQPAPLDSLMPAVVHELYSELSVSVSKELHAEKEPSMIPDVKPGASSSPRSQSRASPLELQRTHAEGCCEETFETLDYGSKPGWCGLVNPTARGPVAFEILDREERTKSMEPKVFRDQGDQAEVVIGPCEAAKEDPCEHSTASKEKIYPSQDVLLIQSSKKPVFADLSGDLLKNKGNVHNTTGTLPEPIEDIEGNCAISKMNKVKEELCDLNLVCEVEDGHQQILNYDKEKPSSAHDHSTTAASKDSIKPSEENSKILYLTSYLSGPKSLEKCHFEDNDLIKEYAEKIHRVEQSKNFTCGKESKEQYWRPRSERRGLFPSNVRQQEQDGSNEKQVVESSNHSICTIQASSCTENYNSVPNSFSEATETMFKKNDLKITLNIQGNLVYSKDHRKTVTDVNHPEVHFEESSFPLLMNTEEPEQTRIKSSALNEKIYSTDSKSIVSIQRNLDDSLPNKASCSDFLSGRKSLQNLIPADPVSSEYNEMSKPKKDTAKLAPCPEFDCGPASEKHVQTSHDNISHLDEPIIACEMSELSYNSELVSHKIEHECVLNQQVSLNSKEHVTLSTDSLLNLNREMPSATCRDAQQSHHSLKNETNVTTNTQTIPAETKLEAMSPQGDKTCGASSYIHTLNIKIRSPEGQKEMVDSGIKDLHSTFLTSEKKAAGYSFDTECQNVQSQDISSCRCVMRNASEKNMCSVCAALGPKKDILKVSNCKINCGNACQSSSHCFQRPEDFVENSTFLESEPAGRETQSSILGGKLRNELTAGVSDSGALTTTTHASSHMETSEEGLGGKKRGKHKDTAVYTLSTSACDTQELNQSTNIPSPDTLVDQSLTVISSHFKTVFQAAGSLDQKADEVSDCQGNQNSPDKCRSEGKPALEGINSDHRETSPEGSLKEKDLIVGSGSKNPVFCGSLEKKDSKGAFENSPGSKELTHSVLDVVCPDCIGEPTEGVLDMEASSPAGHSTRRDKLAYHETLRSTSSLRELNVVFIGTTDQNSEISNAAASTVDSPEILKSREIKVCRSLKDCEMEECPDSAIDHEVESVADHEPHIRALDRGGVSLNHIHCKHQDKGGSVTEGLGANSEFDEKKIFELSSKDLSSRCRGSVDRHSRMSSEEHLPAGISGKAPKLEHLFKPKDGKMLHENVKDCTVQSDMKEGIPAHISNPSEGDTTYVSVDKNVCKACHSRENSTDKYLPLIMETAIKMDREKGMHALLEQHMSLNMLSDEMQNKKQPVADHDESIIMEEVTLRKPTKKKMARQLQRLEDPKEESLCHLLMKDIELCTGPRLLGTSWKEHDPSSAGGDQIHGAFVTLSYQQRLLPVKKQPHRTCKRISCLEPVTVRRKISKVRNSNCGKSSSNPIPTKAHRLLSPCAVPAAPLEPEAVPSKSLCSHIPKLKATLCHPLRSLSCRKPTKESALLNKLSILASKLVLATKPQKLRYRRYSSSLVPLAKSYKRFRYKKLLDGFSYNAMQLDPYLAATGWDRRSNSKPLALYSLESVKMSFIDLSNKMPSLLFGTEIFPFSFHVKSPSCMVESSRTFPEHCAPSRLALAETSQCSSPPPKWTFSFFMSHGCPGMATFREDTGFCSQTRTQAPPQTTAPLRDYGGTAIVQTRADCSVLGLHTLLALCSPGCYRIWTKKRSFSNHMPTMQRLFLTQFTQGLKGLRSPASLADKVFCSLPYSVGRVLSIWSQHGPSCTFQLPALHSTHSKPQGSLSTLSRLEPVFPALVPKSCLVTEPAVSKLLLSASEFQVPGFDELGDVSVACPRPQSNSAEQKEAEPEKRPKKVSQIRIRKTIPKPDPNLTPMGLPRPKRLKKKEFSLEEIYTNKNYKSPPANRCLETIFEEPKERNGTLISVSQQKRKRVLEFQDFTIPRKRRARGKVKLVGSFTRAQKAALQTRELDALLIQKLLELETFFAKEEEQEQSASC", "length": 1932, "header": "tr|A0A9J7KDU6-1|A0A9J7KDU6_CRIGR Computationally mapped isoform of Protein PRR14L isoform X2 OS=Cricetulus griseus OX=10029 GN=Prr14l PE=4 SV=1 CANONICAL=A0A9J7EWB9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 523, "end_pos": 525, "annotation": "n_glycosylation_sequon" }, { "start_pos": 599, "end_pos": 601, "annotation": "n_glycosylation_sequon" }, { "start_pos": 602, "end_pos": 604, "annotation": "n_glycosylation_sequon" }, { "start_pos": 694, "end_pos": 696, "annotation": "n_glycosylation_sequon" }, { "start_pos": 743, "end_pos": 745, "annotation": "n_glycosylation_sequon" }, { "start_pos": 823, "end_pos": 825, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EWB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWB9" }, { "id": "PF15386", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15386" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tantalus-like", "eco_id": "ECO_0000259", "start_pos": 1831, "end_pos": 1888, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1194, "end_pos": 1196 }, { "start_pos": 1743, "end_pos": 1745 }, { "start_pos": 1830, "end_pos": 1832 }, { "start_pos": 1878, "end_pos": 1880 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 303, "end_pos": 305 }, { "start_pos": 347, "end_pos": 349 }, { "start_pos": 523, "end_pos": 525 }, { "start_pos": 599, "end_pos": 601 }, { "start_pos": 602, "end_pos": 604 }, { "start_pos": 694, "end_pos": 696 }, { "start_pos": 743, "end_pos": 745 }, { 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EWM3-1", "uniprot_ac": "A0A9J7EWM3", "uniprot_id": "A0A9J7EWM3_CRIGR", "mass": { "chemical_mass": 35587.0, "monoisotopic_mass": 35587.0 }, "refseq": { "ac": "XP_003512341", "name": "sulfotransferase family cytosolic 1B member 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512341" }, "gene_names": [ { "name": "Sult1b1", "type": "recommended", "evidence": [ { "id": "A0A9J7EWM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3" } ] }, { "name": "Sult1b1", "type": "synonym", "evidence": [ { "id": "XP_003512341", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512341" } ] } ], "protein_names": [ { "name": "Sulfotransferase", "type": "recommended", "evidence": [ { "id": "A0A9J7EWM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3/entry#names_and_taxonomy" } ] }, { "name": "2.8.2.-", "type": "synonym", "evidence": [ { "id": "A0A9J7EWM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3/entry#names_and_taxonomy" } ] }, { "name": "sulfotransferase family cytosolic 1B member 1", "type": "synonym", "evidence": [ { "id": "XP_003512341", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512341" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615412.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003512341", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512341" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sult1b1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3", "locus": {} } ], "crossref": [ { "id": "A0A9J7EWM3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EWM3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764411", "url": "https://www.ncbi.nlm.nih.gov/gene/100764411", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764411", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764411", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IIYLCRE", "url": "https://omabrowser.org/oma/group/IIYLCRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EWM3", "url": "https://www.orthodb.org/?gene=A0A9J7EWM3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11783", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11783", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003512341", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512341", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EWM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EWM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTPEDVYRKDLKMIHGCPMVYAFALNWERIEEFQSRPDDLVITTYPKSGTTWISEIVDMVLNDGNVEKCKRDVITAKVPMLELTIPELQISGVEHLKTMPSPRIIKTHLPVDLLPKSFWENNCKMIYLARNAKDVAVSYYHFDLMNSVQPLPGTWEDYLQKFIAGNVAYGSWFNHVKSWWEKKQEHPLLFLYYEDLKQNPKEEIKKIANFLQKRLDEETLDRIIHHTSFEMMKDNPLVNYTHLPSSMMDHNKSPFMRKGVVGDWKNYFTVAQNEKFDVIYKKEMSGTMLKFFKEIQSVEAST", "length": 303, "header": "tr|A0A9J7EWM3-1|A0A9J7EWM3_CRIGR Isoform 1 of Sulfotransferase OS=Cricetulus griseus OX=10029 GN=Sult1b1 PE=3 SV=1 CANONICAL=A0A9J7EWM3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EWM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3/entry", "sequence": { "sequence": "MGTPEDVYRKDLKMIHGCPMVYAFALNWERIEEFQSRPDDLVITTYPKSGTTWISEIVDMVLNDGNVEKCKRDVITAKVPMLELTIPELQISGVEHLKTMPSPRIIKTHLPVDLLPKSFWENNCKMIYLARNAKDVAVSYYHFDLMNSVQPLPGTWEDYLQKFIAGNVAYGSWFNHVKSWWEKKQEHPLLFLYYEDLKQNPKEEIKKIANFLQKRLDEETLDRIIHHTSFEMMKDNPLVNYTHLPSSMMDHNKSPFMRKGVVGDWKNYFTVAQNEKFDVIYKKEMSGTMLKFFKEIQSVEAST", "length": 303, "header": "tr|A0A9J7EWM3-1|A0A9J7EWM3_CRIGR Isoform 1 of Sulfotransferase OS=Cricetulus griseus OX=10029 GN=Sult1b1 PE=3 SV=1 CANONICAL=A0A9J7EWM3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764411", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764411", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287ADU1-1", "protein_name": "Sulfotransferase", "gene_name": "SULT1B1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MISPKDVLRKDLRTVSGCPITYAFADNWEKVEHFQSRPDDIVIATYPKSGTTWISEILDMILNDGDIEKCKRDFITVKVPMLEMAVPGLRISGIEQLEKNPSPRLVKTHLPVDLLPKSFLENNCKIIYLARNAKDVAVSFYHFDLMNNLQPLPGTWEEYLEKFLAGNVAYGSWFNHVKSWWKKKEEHPILFLLYEDVKKNPKQEIKKMVRFLEKNLNDEILDKIIYHTSFEMMKDNPLVNYTHLPSTVMDHSKSPFMRKGTAGDWKNYFTVAQNEKFDAIYKKEMSEIELQFCTEI", "length": 296 }, "evidence": [ { "id": "A0A9J7EWM3", "url": "https://omabrowser.org/oma/group/A0A9J7EWM3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RD72-1", "protein_name": "Sulfotransferase", "gene_name": "sult1st7", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLPDISSIKSPSRPEIFEFAGIPMISYFTKNWEKLKNFQARPDDILIATYPKAGTTWVSYILDLLYFGKVDPNGQSSLPIYMRVPFLESCFPGMPSGTELADNLPNSPRLIKTHLPVQLVPKSFWEQNSRVVYVARNAKDNVVSYFHSDRMNHGQPEPGDWNTFLEDFLKGEVVFGSWFDHVCGWWEKKKTYPNLHYMLYEDMAKDINGEVESLCTFLKLSRSDEEKNKIINSVQFDAMKQNKMTNYSTIPTMDFKISPFMRKGKVGDWKNHFTLAQNEQFDEVYKQKMKNTTLNFRTKI", "length": 301 }, "evidence": [ { "id": "A0A9J7EWM3", "url": "https://omabrowser.org/oma/group/A0A9J7EWM3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O43704-1", "protein_name": "Sulfotransferase 1B1", "gene_name": "SULT1B1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLSPKDILRKDLKLVHGYPMTCAFASNWEKIEQFHSRPDDIVIATYPKSGTTWVSEIIDMILNDGDIEKCKRGFITEKVPMLEMTLPGLRTSGIEQLEKNPSPRIVKTHLPTDLLPKSFWENNCKMIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEEYLEKFLTGKVAYGSWFTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDHSKSPFMRKGTAGDWKNYFTVAQNEKFDAIYETEMSKTALQFRTEI", "length": 296 }, "evidence": [ { "id": "A0A9J7EWM3", "url": "https://omabrowser.org/oma/group/A0A9J7EWM3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P52847-1", "protein_name": "Sulfotransferase 1B1", "gene_name": "Sult1b1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTAEDVFRKDLKIIHGYPMVYAFALGWEKIEEFQSRPCDIVIPTYPKSGTTWLSEIVDMVLNDGNVEKCKRDVITSKVPMLEQNVPGARRSGVELLKKTPSPRIIKTHLPIDLLPKSFWDNKCKMIYLARNGKDVAVSYYHFDLMNNIQPLPGTWEEYLEKFLAGNVAYGSWFDHVKSWWEKREGHPILFLYYEDLKKNPKKEIKKIANFLDKTLDEHTLERIVHHTSFEVMKDNPLVNYTHLPTEIMDHSKSPFMRKGVVGDWKNYFTMTQSEKFDAIYKKKLSGTTLEFCTDIQSA", "length": 299 }, "evidence": [ { "id": "A0A9J7EWM3", "url": "https://omabrowser.org/oma/group/A0A9J7EWM3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3T0Y3-1", "protein_name": "Sulfotransferase 1B1", "gene_name": "SULT1B1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSPKDVLRKNLKLIHGCPITYAFANNWEKIEQFQSRPDDIMIVTYPKSGTTWISEIVDMVLHDGDVEKCKRDVITAKVPMLELALPGLRTSGLEQLEKNPSPRVVKTHLPIDLIPKSFWENNCKIIYLARNAKDVAVSFYHFDLMNNLQPLPGTWGEYLEKFLTGNVAYGSWFNHVKSWWKKKEGHPILFLFYEDMKENPKQEIKKVVRFLEKNLDDEILDKIIYHTSFEMMKDNPLVNYTHLPSEVMDHSKSSFMRKGIAGDWKNYFTVAQNEKFDAIYKKEMSETELQFRTEI", "length": 296 }, "evidence": [ { "id": "A0A9J7EWM3", "url": "https://omabrowser.org/oma/group/A0A9J7EWM3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8JG30-1", "protein_name": "Sulfotransferase 1B1", "gene_name": "SULT1B1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGTVDAYLRQPWSTVHAIPMVSAFAQNWERVDNFQSRPDDIVVATFPKSGTTWISEIVDMILQGGDPKKCKRDAIVNRVPMLEFAAPGQMPAGTEQLENMPSPRIIKTHIPADILPKSFWDKSCKMIYVGRNAKDVAVSYYHFDLMNKLHPHPGTWDQYLEAFMAGKVAYGSWFDHVRGYWERRQEHPILYLFYEDMKEDLRREVAKVAQFLGRELTEVALDAIAHHTSFEAMRDNPSTNYSVVPSQLMDHGISPFMRKGITGDWKNHFTVAQSAHFDQYYAQKMAGTDLRFRTHI", "length": 296 }, "evidence": [ { "id": "A0A9J7EWM3", "url": "https://omabrowser.org/oma/group/A0A9J7EWM3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9QWG7-1", "protein_name": "Sulfotransferase 1B1", "gene_name": "Sult1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSASEDVWRKDLKMIHGYPMIYAFALNWERIEEFQSTPGDIVITTYPKSGTTWLSEIVDMVLNDGNVEKCKRDVITSKVPMLELSVPGIRISGVELLKKTPSPRIIKTHLPIDLLPKSFWENKCKMIYLARNGKDVAVSYYHFDLMNSINPLPGTWEEYLEKFLAGNVAYGSWFDHVKSWWEKREEHPLLYLYYEELKQNPKKEIKKIASFLDKTLDEEALDRIVHHTSFEMMKENPLVNYTHLPTAMMDHSKSPFMRKGIVGDWKNYFTMTQTEQFDAVYKKKMSGTTLEFCTDIQSA", "length": 299 }, "evidence": [ { "id": "A0A9J7EWM3", "url": "https://omabrowser.org/oma/group/A0A9J7EWM3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sulfotransferase activity", "id": "GO:0008146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008146", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EWM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWM3" }, { "id": "PF00685", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfotransferase", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 288, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 240, "end_pos": 242 }, { "start_pos": 252, "end_pos": 254 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F2J7-1", "uniprot_ac": "A0A9J7F2J7", "uniprot_id": "A0A9J7F2J7_CRIGR", "mass": { "chemical_mass": 81408.0, "monoisotopic_mass": 81408.0 }, "refseq": { "ac": "XP_027245273", "name": "rho GTPase-activating protein 22 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245273" }, "gene_names": [ { "name": "Arhgap22", "type": "recommended", "evidence": [ { "id": "A0A9J7F2J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" } ] }, { "name": "Arhgap22", "type": "synonym", "evidence": [ { "id": "XP_027245273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245273" } ] } ], "protein_names": [ { "name": "Rho GTPase-activating protein 22 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F2J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7/entry#names_and_taxonomy" } ] }, { "name": "rho GTPase-activating protein 22 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027245273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245273" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245273" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgap22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7", "locus": {} } ], "crossref": [ { "id": "A0A9J7F2J7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F2J7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04390", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04390", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13378", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13378", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771443", "url": "https://www.ncbi.nlm.nih.gov/gene/100771443", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771443", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771443", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F2J7", "url": "https://www.orthodb.org/?gene=A0A9J7F2J7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15228:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15228:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027245273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245273", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EWV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EWV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J2X1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J2X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J799", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J799", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J799-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J799-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKILKGIQENLGRAAAHHDLKGILEHSQKNSLASVTLARSKSLVMGEHNRSPGRPLAPHKLGPVLKAGWLRKQRSIMKNWQQRWFVLRGDQLFYYKDKDESKPQGFISLQGTQVTELLPDPEDPGKHLFEITPGGSGEREKVPANPEALLLMASSQRDMEDWVQAIRRVIWAPLGGGTSRSSHAHPVEPLSTGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQATLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICRFLDEVQAHSNVNKMSVQNLATVFGPNILRPQIEDPVTIMEGTSLVQHLMTVLIRKHGQLFASASLEEPASPPRTVQGTAEWGSEEVPSDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPQHLGSQTGPAATSPGKRMHTLPGWKSSFRQGSRSESPKGGSSSLEVPIISGGNWLINGLSSLRGHRRASSGDRLKDTGSVQRLSTYDNVPPSSHFPSTASMASMSWSIASSSQEASVSSCTACRASDSSACSSLHTEWALEPSPLPSSSEDHRSPDLGHSLDEACVGSGSSEPNDPGSPTLAHVHRCRALQGQVAELRAELCQQRTEYERSLKSIEEGSADLRKQMSRLEEELDQERKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTVGTKGARAPE", "length": 740, "header": "tr|A0A9J7F2J7-1|A0A9J7F2J7_CRIGR Isoform 1 of Rho GTPase-activating protein 22 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arhgap22 PE=4 SV=1 CANONICAL=A0A9J7F2J7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EWV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWV7/entry", "sequence": { "sequence": "MKILKGIQENLGRAAAHHDLKGILEHSQKNSLASVTLARSKSLVMGEHNRSPGRPLAPHKLGPVLKAGWLRKQRSIMKNWQQRWFVLRGDQLFYYKDKDESKPQGFISLQGTQVTELLPDPEDPGKHLFEITPGGSGEREKVPANPEALLLMASSQRDMEDWVQAIRRVIWAPLGGGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQATLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICRFLDEVQAHSNVNKMSVQNLATVFGPNILRPQIEDPVTIMEGTSLVQHLMTVLIRKHGQLFASASLEEPASPPRTVQGTAEWGSEEVPSDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPQHLGSQTGPAATSPGKRMHTLPGWKSSFRQGSRSESPKGGSSSLEVPIISGGNWLINGLSSLRGHRRASSGDRLKDTGSVQRLSTYDNVPPSSHFPSTASMASMSWSIASSSQEASVSSCTACRASDSSACSSLHTEWALEPSPLPSSSEDHRSPDLGHSLDEACVGSGSSEPNDPGSPTLAHVHRCRALQGQVAELRAELCQQRTEYERSLKSIEEGSADLRKQMSRLEEELDQERKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTVGTKGARAPE", "length": 724, "header": "tr|A0A9J7EWV7-1|A0A9J7F2J7_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 22 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arhgap22 PE=4 SV=1 CANONICAL=A0A9J7F2J7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E3/entry", "sequence": { "sequence": "MLPTASSKRRTFAARYFTRSKSLVMGEHNRSPGRPLAPHKLGPVLKAGWLRKQRSIMKNWQQRWFVLRGDQLFYYKDKDESKPQGFISLQGTQVTELLPDPEDPGKHLFEITPGGSGEREKVPANPEALLLMASSQRDMEDWVQAIRRVIWAPLGGGTSRSSHAHPVEPLSTGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQATLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICRFLDEVQAHSNVNKMSVQNLATVFGPNILRPQIEDPVTIMEGTSLVQHLMTVLIRKHGQLFASASLEEPASPPRTVQGTAEWGSEEVPSDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPQHLGSQTGPAATSPGKRMHTLPGWKSSFRQGSRSESPKGGSSSLEVPIISGGNWLINGLSSLRGHRRASSGDRLKDTGSVQRLSTYDNVPPSSHFPSTASMASMSWSIASSSQEASVSSCTACRASDSSACSSLHTEWALEPSPLPSSSEDHRSPDLGHSLDEACVGSGSSEPNDPGSPTLAHVHRCRALQGQVAELRAELCQQRTEYERSLKSIEEGSADLRKQMSRLEEELDQERKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTVGTKGARAPE", "length": 720, "header": "tr|A0A9J7F1E3-1|A0A9J7F1E3_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 22 isoform X3 OS=Cricetulus griseus OX=10029 GN=Arhgap22 PE=4 SV=1 CANONICAL=A0A9J7F2J7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7/entry", "sequence": { "sequence": "MKILKGIQENLGRAAAHHDLKGILEHSQKNSLASVTLARSKSLVMGEHNRSPGRPLAPHKLGPVLKAGWLRKQRSIMKNWQQRWFVLRGDQLFYYKDKDESKPQGFISLQGTQVTELLPDPEDPGKHLFEITPGGSGEREKVPANPEALLLMASSQRDMEDWVQAIRRVIWAPLGGGTSRSSHAHPVEPLSTGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQATLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICRFLDEVQAHSNVNKMSVQNLATVFGPNILRPQIEDPVTIMEGTSLVQHLMTVLIRKHGQLFASASLEEPASPPRTVQGTAEWGSEEVPSDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPQHLGSQTGPAATSPGKRMHTLPGWKSSFRQGSRSESPKGGSSSLEVPIISGGNWLINGLSSLRGHRRASSGDRLKDTGSVQRLSTYDNVPPSSHFPSTASMASMSWSIASSSQEASVSSCTACRASDSSACSSLHTEWALEPSPLPSSSEDHRSPDLGHSLDEACVGSGSSEPNDPGSPTLAHVHRCRALQGQVAELRAELCQQRTEYERSLKSIEEGSADLRKQMSRLEEELDQERKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTVGTKGARAPE", "length": 740, "header": "tr|A0A9J7F2J7-1|A0A9J7F2J7_CRIGR Isoform 1 of Rho GTPase-activating protein 22 isoform X1 OS=Cricetulus griseus OX=10029 GN=Arhgap22 PE=4 SV=1 CANONICAL=A0A9J7F2J7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J2X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2X1/entry", "sequence": { "sequence": "MLSPKIRQARRARSKSLVMGEHNRSPGRPLAPHKLGPVLKAGWLRKQRSIMKNWQQRWFVLRGDQLFYYKDKDESKPQGFISLQGTQVTELLPDPEDPGKHLFEITPGGSGEREKVPANPEALLLMASSQRDMEDWVQAIRRVIWAPLGGGTSRSSHAHPVEPLSTGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQATLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICRFLDEVQAHSNVNKMSVQNLATVFGPNILRPQIEDPVTIMEGTSLVQHLMTVLIRKHGQLFASASLEEPASPPRTVQGTAEWGSEEVPSDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPQHLGSQTGPAATSPGKRMHTLPGWKSSFRQGSRSESPKGGSSSLEVPIISGGNWLINGLSSLRGHRRASSGDRLKDTGSVQRLSTYDNVPPSSHFPSTASMASMSWSIASSSQEASVSSCTACRASDSSACSSLHTEWALEPSPLPSSSEDHRSPDLGHSLDEACVGSGSSEPNDPGSPTLAHVHRCRALQGQVAELRAELCQQRTEYERSLKSIEEGSADLRKQMSRLEEELDQERKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTVGTKGARAPE", "length": 714, "header": "tr|A0A9J7J2X1-1|A0A9J7J2X1_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 22 isoform X4 OS=Cricetulus griseus OX=10029 GN=Arhgap22 PE=4 SV=1 CANONICAL=A0A9J7F2J7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J799-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J799/entry", "sequence": { "sequence": "MKILKGIQENLGRAAAHHDLKGILEHSQKNSLASVTLARSKSLVMGEHNRSPGRPLAPHKLGPVLKAGWLRKQRSIMKNWQQRWFVLRGDQLFYYKDKDESKPQGFISLQGTQVTELLPDPEDPGKHLFEITPGIFGQRLEDTVHHERKYGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQATLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICRFLDEVQAHSNVNKMSVQNLATVFGPNILRPQIEDPVTIMEGTSLVQHLMTVLIRKHGQLFASASLEEPASPPRTVQGTAEWGSEEVPSDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPQHLGSQTGPAATSPGKRMHTLPGWKSSFRQGSRSESPKGGSSSLEVPIISGGNWLINGLSSLRGHRRASSGDRLKDTGSVQRLSTYDNVPPSSHFPSTASMASMSWSIASSSQEASVSSCTACRASDSSACSSLHTEWALEPSPLPSSSEDHRSPDLGHSLDEACVGSGSSEPNDPGSPTLAHVHRCRALQGQVAELRAELCQQRTEYERSLKSIEEGSADLRKQMSRLEEELDQERKKYAMLEIKLRNSERAREDAERRNQLLQREMEEFFATLGSLTVGTKGARAPE", "length": 681, "header": "tr|A0A9J7J799-1|A0A9J7J799_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 22 isoform X5 OS=Cricetulus griseus OX=10029 GN=Arhgap22 PE=4 SV=1 CANONICAL=A0A9J7F2J7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWV7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWV7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771443", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771443", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" } ], "pmid": "" }, { "name": "regulation of small GTPase mediated signal transduction", "id": "GO:0051056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051056", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F2J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 171, "start_aa": "Pro", "end_aa": "Trp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F2J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2J7" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 197, "end_pos": 391, "start_aa": "Gln", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 49, "end_pos": 51 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EX41-1", "uniprot_ac": "A0A9J7EX41", "uniprot_id": "A0A9J7EX41_CRIGR", "mass": { "chemical_mass": 47571.0, "monoisotopic_mass": 47571.0 }, "refseq": { "ac": "XP_003496577", "name": "taste receptor type 2 member 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496577" }, "gene_names": [ { "name": "LOC100765386", "type": "recommended", "evidence": [ { "id": "A0A9J7EX41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41" } ] }, { "name": "LOC100765386", "type": "synonym", "evidence": [ { "id": "XP_003496577", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496577" } ] } ], "protein_names": [ { "name": "Taste receptor type 2 member 9", "type": "synonym", "evidence": [ { "id": "A0A9J7EX41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41/entry#names_and_taxonomy" } ] }, { "name": "taste receptor type 2 member 9", "type": "synonym", "evidence": [ { "id": "XP_003496577", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496577" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 28% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613625.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496577", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496577" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765386", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41", "locus": {} } ], "crossref": [ { "id": "A0A9J7EX41", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EX41", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765386", "url": "https://www.ncbi.nlm.nih.gov/gene/100765386", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765386", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765386", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EX41", "url": "https://www.orthodb.org/?gene=A0A9J7EX41", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05296", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05296", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496577", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496577", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EX41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EX41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFPFPAILHMVVMTAEFLIGTTVNGFLIVVNCYDLIKSRKLLILPILLICTGLSRLGLQMMLMTQSFFSVFFPFAYEENIYGSNMMFIWMFFSSTGLWFATCLSVFYCLKISGFTQPWFLWLKFRISKLMFWLLLSSLLASLGTATVSIEVGFPLIEDGYVLRNTNLNISDVKLMKNNDLLLINLALLLPLTVFVKCTSMLFISLYKHTYRMQGGSHKLSNARAEAHINALKTVTTFFCFFVSYFAAFMANMTFRVPYRSHQFFVVKEVMAAYPAGHSVIIILSNSKFKDLFGRVICLKKREGGNELSGLSNVCVEAEVTAAAMLMRPRSTQRTEAATHSLYSTASRPLCWVRTPLLSTGAEQNIKQTVTENRCGPLTINTATQVQMSSWLQVLDRTPTYTGSEKFSETEELRACSGVDVA", "length": 422, "header": "tr|A0A9J7EX41-1|A0A9J7EX41_CRIGR Isoform 1 of Taste receptor type 2 member 9 OS=Cricetulus griseus OX=10029 GN=LOC100765386 PE=3 SV=1 CANONICAL=A0A9J7EX41-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EX41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41/entry", "sequence": { "sequence": "MTFPFPAILHMVVMTAEFLIGTTVNGFLIVVNCYDLIKSRKLLILPILLICTGLSRLGLQMMLMTQSFFSVFFPFAYEENIYGSNMMFIWMFFSSTGLWFATCLSVFYCLKISGFTQPWFLWLKFRISKLMFWLLLSSLLASLGTATVSIEVGFPLIEDGYVLRNTNLNISDVKLMKNNDLLLINLALLLPLTVFVKCTSMLFISLYKHTYRMQGGSHKLSNARAEAHINALKTVTTFFCFFVSYFAAFMANMTFRVPYRSHQFFVVKEVMAAYPAGHSVIIILSNSKFKDLFGRVICLKKREGGNELSGLSNVCVEAEVTAAAMLMRPRSTQRTEAATHSLYSTASRPLCWVRTPLLSTGAEQNIKQTVTENRCGPLTINTATQVQMSSWLQVLDRTPTYTGSEKFSETEELRACSGVDVA", "length": 422, "header": "tr|A0A9J7EX41-1|A0A9J7EX41_CRIGR Isoform 1 of Taste receptor type 2 member 9 OS=Cricetulus griseus OX=10029 GN=LOC100765386 PE=3 SV=1 CANONICAL=A0A9J7EX41-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765386", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765386", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41" } ], "pmid": "" }, { "name": "bitter taste receptor activity", "id": "GO:0033038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033038", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 169, "end_pos": 171 }, { "start_pos": 252, "end_pos": 254 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EX45-1", "uniprot_ac": "A0A9J7EX45", "uniprot_id": "A0A9J7EX45_CRIGR", "mass": { "chemical_mass": 43788.0, "monoisotopic_mass": 43788.0 }, "refseq": { "ac": "XP_027244683", "name": "igE-binding protein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244683" }, "gene_names": [ { "name": "LOC113832502", "type": "recommended", "evidence": [ { "id": "A0A9J7EX45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45" } ] }, { "name": "LOC113832502", "type": "synonym", "evidence": [ { "id": "XP_027244683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244683" } ] } ], "protein_names": [ { "name": "IgE-binding protein-like", "type": "synonym", "evidence": [ { "id": "A0A9J7EX45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45/entry#names_and_taxonomy" } ] }, { "name": "igE-binding protein-like", "type": "synonym", "evidence": [ { "id": "XP_027244683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244683" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027244683.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244683", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244683" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832502", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45", "locus": {} } ], "crossref": [ { "id": "A0A9J7EX45", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EX45", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832502", "url": "https://www.ncbi.nlm.nih.gov/gene/113832502", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832502", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832502", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EX45", "url": "https://www.orthodb.org/?gene=A0A9J7EX45", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244683", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244683", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EX45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EX45-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLQQRGREVFSITHYSKTPQCAPPLFGTDSFLPLEERRKLQMAFPVFENEGARVHAPVDYNQIKELAESVRKYGVNANFTTIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALWYDAAQAQAKANVTAENENQRQWTFEMLTGQGPHALNQTNYIWGVYAQISAAAIKAWKALTKRDESGGHLTKIVQGPQEPFSDFVARMTEAASRIFGDAEQAMPLIEQLVFEQATQECRAAIAPRKSKGLQDWLKICRELGGPLTNAGLAAAILQTQRRRNMSACFNCGKTGHLKKDCRAPERTREVELCRRCGKGYHRASECKSVRDIKGRLLPPREEPKSSQPKNGPRGPWSQGPQKYGNQFRKSNSEKEGTPEDTPEWTCVPPPTSY", "length": 388, "header": "tr|A0A9J7EX45-1|A0A9J7EX45_CRIGR Isoform 1 of IgE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113832502 PE=4 SV=1 CANONICAL=A0A9J7EX45-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EX45-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45/entry", "sequence": { "sequence": "MFLQQRGREVFSITHYSKTPQCAPPLFGTDSFLPLEERRKLQMAFPVFENEGARVHAPVDYNQIKELAESVRKYGVNANFTTIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALWYDAAQAQAKANVTAENENQRQWTFEMLTGQGPHALNQTNYIWGVYAQISAAAIKAWKALTKRDESGGHLTKIVQGPQEPFSDFVARMTEAASRIFGDAEQAMPLIEQLVFEQATQECRAAIAPRKSKGLQDWLKICRELGGPLTNAGLAAAILQTQRRRNMSACFNCGKTGHLKKDCRAPERTREVELCRRCGKGYHRASECKSVRDIKGRLLPPREEPKSSQPKNGPRGPWSQGPQKYGNQFRKSNSEKEGTPEDTPEWTCVPPPTSY", "length": 388, "header": "tr|A0A9J7EX45-1|A0A9J7EX45_CRIGR Isoform 1 of IgE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113832502 PE=4 SV=1 CANONICAL=A0A9J7EX45-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832502", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832502", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX45" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX45", 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245590", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245590" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX80" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgef5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX80", "locus": {} } ], "crossref": [ { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01221", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01221", "database": "CDD", 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX80" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756445", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756445", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX80" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX80", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003507002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003507002" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751756", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90", "locus": {} } ], "crossref": [ { "id": "A0A9J7EX90", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EX90", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751756", "url": "https://www.ncbi.nlm.nih.gov/gene/100751756", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751756", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751756", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EX90", "url": "https://www.orthodb.org/?gene=A0A9J7EX90", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003507002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003507002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EX90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIFLILTLLGIAVPDFPEAILGEYQDTDEVLPDDFTIPYMAYLQSRPEPCVGTLIDPQWVITAAHCPLPDKIRLGVHQPNIKNEREQTYSYALTVVHPNFDANLRKNDLMLIKLSYPASVNMYVGTIAIAMEAMAFNETCFIPTWIWNSYKNFSDPDMLAWINQYSLSPSDCWNILHRQRQETRLNIMCLGRLANVATSVKEVSAAPAICNGRLHGILSWGKAGIMKGSQGFFTEIHPYGRWILKTMHAH", "length": 251, "header": "tr|A0A9J7EX90-1|A0A9J7EX90_CRIGR Isoform 1 of Probable inactive serine protease 58 OS=Cricetulus griseus OX=10029 GN=LOC100751756 PE=4 SV=1 CANONICAL=A0A9J7EX90-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EX90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90/entry", "sequence": { "sequence": "MKIFLILTLLGIAVPDFPEAILGEYQDTDEVLPDDFTIPYMAYLQSRPEPCVGTLIDPQWVITAAHCPLPDKIRLGVHQPNIKNEREQTYSYALTVVHPNFDANLRKNDLMLIKLSYPASVNMYVGTIAIAMEAMAFNETCFIPTWIWNSYKNFSDPDMLAWINQYSLSPSDCWNILHRQRQETRLNIMCLGRLANVATSVKEVSAAPAICNGRLHGILSWGKAGIMKGSQGFFTEIHPYGRWILKTMHAH", "length": 251, "header": "tr|A0A9J7EX90-1|A0A9J7EX90_CRIGR Isoform 1 of Probable inactive serine protease 58 OS=Cricetulus griseus OX=10029 GN=LOC100751756 PE=4 SV=1 CANONICAL=A0A9J7EX90-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751756", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751756", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "pmid": "" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "pmid": "" }, { "name": "positive regulation of reproductive process", "id": "GO:2000243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000243", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX90" } ], "pmid": "" } ] } ] }, 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"phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 }, { "start_pos": 153, "end_pos": 155 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244789", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244789" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EX91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX91" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752061", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EX91", "locus": {} } ], "crossref": [ { "id": "cd04013", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04013", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05136", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05136", "database": "CDD", 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"XP_027245582", "name": "TRPM8 channel-associated factor 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245582" }, "gene_names": [ { "name": "LOC100760787", "type": "recommended", "evidence": [ { "id": "A0A9J7EXA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXA0" } ] }, { "name": "LOC100760787", "type": "synonym", "evidence": [ { "id": "XP_027245582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245582" } ] } ], "protein_names": [ { "name": "TRPM8 channel-associated factor 2", "type": "synonym", "evidence": [ { "id": "XP_027245582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245582" }, { "id": "A0A9J7EXA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXA0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245582" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXA0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760787", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXA0", "locus": {} } ], "crossref": [ { "id": "100760787", "url": "https://www.ncbi.nlm.nih.gov/gene/100760787", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760787", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760787", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EXA0", "url": "https://www.orthodb.org/?gene=A0A9J7EXA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27027", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27027", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027245582", "url": 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027242307.1. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. 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"IPR038798", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038798", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761168", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761168", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0P4", "url": "https://www.orthodb.org/?gene=A0A9J7F0P4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34523", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34523", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34523:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34523:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21035", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21035", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244143", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244143", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EXT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EXT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F014", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F014", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F014-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F014-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F042", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F042", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F042-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F042-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0P4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0P4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J856", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J856", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J856-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J856-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERRVVKPPGQDMIVERLKSLYGLAGSCSVEQEFSNFDQTKYKRRILTSPEDLDTYCSGDRGVSSLRCYSDERKHPTTPFCSSFKHLNVNCLDDELDSFHNLKKWETEKELTEDDHRDSASKITKQSFREIEKDALPTNIASSRLHTEHHSDSVDSPLKHVIYPKSKVSNKQSLLPHQINQIYDELFHIHLKLQCETASQQKFAEELQQREWFLAEREQLLFRHETALSKIKGVEEEVLTRFQILKEDPMWFGPVQALDMLPHSQHNTEVGHLTEVLKEKNKESKRMRSSFDALRELNDNLRKQLHEVSEENRKMEIQAKRVQARLDNLQRKYEFMTIQRLKEDSHATHEMKSLKQEKAPVSKPVKTALSGQVYELLIVFMDWISDHHLNKVEPEEPGVDGEKPSFKPFQKSDIQEKCVKLLPLMTEQLQWMPLVNPKIHEPFLKFIYWSLRQLHPGTQHSTMTSTLRRLGEDIFKGVAIKGTQDNSSEHSVENRPKTAAFFKSSSLSLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAVPVILKHLRISSKGLLSNAIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKKLFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLTSSTSH", "length": 683, "header": "tr|A0A9J7F0P4-1|A0A9J7F0P4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 138 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ccdc138 PE=4 SV=1 CANONICAL=A0A9J7F0P4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EXT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXT3/entry", "sequence": { "sequence": "MERRVVKPPGQDMIVERLKSLYGLAGSCSVEQEFSNFDQTKYKRRILTSPEDLDTYCSGDRGVSSLRCYSDERKHPTTPFCSSFKHLNVNCLDDELDSFHNLKKWETEKELTEDDHRDSASKITKQSFREIEKDALPTNIASSRLHTEHHSDSVDSPLKHVIYPKSKVSNKQSLLPHQINQIYDELFHIHLKLQCETASQQKFAEELQQREWFLAEREQLLFRHETALSKIKGVEEEVLTRFQILKELHEVSEENRKMEIQAKRVQARLDNLQRKYEFMTIQRLKEDSHATHEMKSLKQEKAPVSKPVKTALSGQVYELLIVFMDWISDHHLNKVEPEEPGVDGEKPSFKPFQKSDIQEKCVKLLPLMTEQLQWMPLVNPKIHEPFLKFIYWSLRQLHPGTQHSTMTSTLRRLGEDIFKGVAIKGTQDNSSEHSVENRPKTAAFFKSSSLSLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAVPVILKHLRISSKGLLSNAIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKKLFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLTSSTSH", "length": 626, "header": "tr|A0A9J7EXT3-1|A0A9J7F0P4_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 138 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ccdc138 PE=4 SV=1 CANONICAL=A0A9J7F0P4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F014-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F014/entry", "sequence": { "sequence": "MERRVVKPPGQDMIVERLKSLYGLAGSCSVEQEFSNFDQTKYKRRILTSPEDLDTYCSGDRGVSSLRCYSDERKHPTTPFCSSFKHLNVNCLDDELDSFHNLKKWETEKELTEDDHRDSASKITKQSFREIEKDALPTNIASSRLHTEHHSDSVDSPLKHVIYPKSKVSNKQSLLPHQINQIYDELFHIHLKLQCETASQQKFAEELQQREWFLAEREQLLFRHETALSKIKGVEEEVLTRFQILKEDPMWFGPVQALDMLPHSQHNTEVGHLTEVLKEKNKESKRMRSSFDALRELNDNLRKQLHEVSEENRKMEIQAKRVQARLDNLQRKYEFMTIQRLKEDSHATHEMKSLKQEKAPVSKPVKTALSGQVYELLIVFMDWISDHHLNKVEPEEPGVDGEKPSFKPFQKSDIQEKCVKHSTMTSTLRRLGEDIFKGVAIKGTQDNSSEHSVENRPKTAAFFKSSSLSLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAVPVILKHLRISSKGLLSNAIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKKLFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLTSSTSH", "length": 644, "header": "tr|A0A9J7F014-1|A0A9J7F014_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 138 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ccdc138 PE=4 SV=1 CANONICAL=A0A9J7F0P4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F042-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F042/entry", "sequence": { "sequence": "MERRVVKPPGQDMIVERLKSLYGLAGSCSVEQEFSNFDQTKYKRRILTSPEDLDTYCSGDRGVSSLRCYSDERKHPTTPFCSSFKHLNVNCLDDELDSFHNLKKWETEKELTEDDHRDSASKITKQSFREIEKDALPTNIASSRLHTEHHSDSVDSPLKHVIYPKSKVSNKQSLLPHQINQIYDELFHIHLKLQCETASQQKFAEELQQREWFLAEREQLLFRHETALSKIKGVEEEVLTRFQILKEQHNTEVGHLTEVLKEKNKESKRMRSSFDALRELNDNLRKQLHEVSEENRKMEIQAKRVQARLDNLQRKYEFMTIQRLKEDSHATHEMKSLKQEKAPVSKPVKTALSGQVYELLIVFMDWISDHHLNKVEPEEPGVDGEKPSFKPFQKSDIQEKCVKLLPLMTEQLQWMPLVNPKIHEPFLKFIYWSLRQLHPGTQHSTMTSTLRRLGEDIFKGVAIKGTQDNSSEHSVENRPKTAAFFKSSSLSLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAVPVILKHLRISSKGLLSNAIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKKLFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLTSSTSH", "length": 666, "header": "tr|A0A9J7F042-1|A0A9J7F042_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 138 isoform X6 OS=Cricetulus griseus OX=10029 GN=Ccdc138 PE=4 SV=1 CANONICAL=A0A9J7F0P4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0P4/entry", "sequence": { "sequence": "MERRVVKPPGQDMIVERLKSLYGLAGSCSVEQEFSNFDQTKYKRRILTSPEDLDTYCSGDRGVSSLRCYSDERKHPTTPFCSSFKHLNVNCLDDELDSFHNLKKWETEKELTEDDHRDSASKITKQSFREIEKDALPTNIASSRLHTEHHSDSVDSPLKHVIYPKSKVSNKQSLLPHQINQIYDELFHIHLKLQCETASQQKFAEELQQREWFLAEREQLLFRHETALSKIKGVEEEVLTRFQILKEDPMWFGPVQALDMLPHSQHNTEVGHLTEVLKEKNKESKRMRSSFDALRELNDNLRKQLHEVSEENRKMEIQAKRVQARLDNLQRKYEFMTIQRLKEDSHATHEMKSLKQEKAPVSKPVKTALSGQVYELLIVFMDWISDHHLNKVEPEEPGVDGEKPSFKPFQKSDIQEKCVKLLPLMTEQLQWMPLVNPKIHEPFLKFIYWSLRQLHPGTQHSTMTSTLRRLGEDIFKGVAIKGTQDNSSEHSVENRPKTAAFFKSSSLSLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAVPVILKHLRISSKGLLSNAIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKKLFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLTSSTSH", "length": 683, "header": "tr|A0A9J7F0P4-1|A0A9J7F0P4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 138 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ccdc138 PE=4 SV=1 CANONICAL=A0A9J7F0P4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J856-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J856/entry", "sequence": { "sequence": "MERRVVKPPGQDMIVERLKSLYGLAGSCSVEQEFSNFDQTKYKRRILTSPDLDTYCSGDRGVSSLRCYSDERKHPTTPFCSSFKHLNVNCLDDELDSFHNLKKWETEKELTEDDHRDSASKITKQSFREIEKDALPTNIASSRLHTEHHSDSVDSPLKHVIYPKSKVSNKQSLLPHQINQIYDELFHIHLKLQCETASQQKFAEELQQREWFLAEREQLLFRHETALSKIKGVEEEVLTRFQILKEDPMWFGPVQALDMLPHSQHNTEVGHLTEVLKEKNKESKRMRSSFDALRELNDNLRKQLHEVSEENRKMEIQAKRVQARLDNLQRKYEFMTIQRLKEDSHATHEMKSLKQEKAPVSKPVKTALSGQVYELLIVFMDWISDHHLNKVEPEEPGVDGEKPSFKPFQKSDIQEKCVKLLPLMTEQLQWMPLVNPKIHEPFLKFIYWSLRQLHPGTQHSTMTSTLRRLGEDIFKGVAIKGTQDNSSEHSVENRPKTAAFFKSSSLSLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAVPVILKHLRISSKGLLSNAIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKKLFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLTSSTSH", "length": 682, "header": "tr|A0A9J7J856-1|A0A9J7J856_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 138 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ccdc138 PE=4 SV=1 CANONICAL=A0A9J7F0P4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A4/entry", "sequence": { "sequence": "MWFGPVQALDMLPHSQHNTEVGHLTEVLKEKNKESKRMRSSFDALRELNDNLRKQLHEVSEENRKMEIQAKRVQARLDNLQRKYEFMTIQRLKEDSHATHEMKSLKQEKAPVSKPVKTALSGQVYELLIVFMDWISDHHLNKVEPEEPGVDGEKPSFKPFQKSDIQEKCVKLLPLMTEQLQWMPLVNPKIHEPFLKFIYWSLRQLHPGTQHSTMTSTLRRLGEDIFKGVAIKGTQDNSSEHSVENRPKTAAFFKSSSLSLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTDEGKTLFLEYQAVPVILKHLRISSKGLLSNAIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRTPKLDLHILEKLSIILQKLSKIKSNKKLFEVFTIHLMLQEIQRTTHPEHAFLCINLNSTLFNLGLTKCNSLTSSTSH", "length": 434, "header": "tr|A0A9J7K4A4-1|A0A9J7K4A4_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 138 isoform X9 OS=Cricetulus griseus OX=10029 GN=Ccdc138 PE=4 SV=1 CANONICAL=A0A9J7F0P4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXT3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EXT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXT3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761168", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761168", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F0P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0P4" }, { "id": "PF21035", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coiled-coil", "eco_id": "ECO_0000259", "start_pos": 381, "end_pos": 669, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F0P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0P4" }, { "id": "PF21037", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coiled-coil-domain-containing protein 138 coiled-coil", "eco_id": "ECO_0000259", "start_pos": 282, "end_pos": 340, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 486, "end_pos": 488 }, { "start_pos": 663, "end_pos": 665 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F0M1-1", "uniprot_ac": "A0A9J7F0M1", "uniprot_id": "A0A9J7F0M1_CRIGR", "mass": { "chemical_mass": 229729.0, "monoisotopic_mass": 229729.0 }, "refseq": { "ac": "XP_027244582", "name": "protein PRRC2A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244582" }, "gene_names": [ { "name": "Prrc2a", "type": "recommended", "evidence": [ { "id": "A0A9J7F0M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1" } ] }, { "name": "Prrc2a", "type": "synonym", "evidence": [ { "id": "XP_027244582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244582" } ] } ], "protein_names": [ { "name": "Protein PRRC2A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F0M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1/entry#names_and_taxonomy" } ] }, { "name": "protein PRRC2A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027244582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244582" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244582" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prrc2a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1", "locus": {} } ], "crossref": [ { "id": "100771999", "url": "https://www.ncbi.nlm.nih.gov/gene/100771999", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009738", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009738", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033184", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033184", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771999", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771999", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0M1", "url": "https://www.orthodb.org/?gene=A0A9J7F0M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14038", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14038", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14038:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14038:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244582", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EYA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0K5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0K5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPTAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPGRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSEEEGAEGHKDSQSAVSEEPEADGKEGTSPGSLPPPPKTAWTENSRLPETEPAPATPKPPPPPPHRGPVGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPVNTPAPAPPPAVPKELPAPSLPPAPAPAPEKEPEEPAQAPPVQSTPSPGVVPAPTLASGGGTASSTSSGSLEGSPVEPQLPSKEGPEPAEEVPPPTTSPAPKVEPKGDGVGPTRQPPNQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQWQQQQQQQQQQGPAPPAPVPPSPPQPVTLGTVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAPPLLRERGTPPVDPKLAWVGDVFTTTPTDPRPLTSPLRQAADEDDKSMRSETPPVPPPPPYLANYPGFPENGAPGPPVSRFPLEEPAPPGPRPLPWPPSNDEAAKIQAPPPKKELPKEEPPQVSGPEAGRKPARGGGGQGPPPPRRENRTETRWGPRPGSCRRGIPPEETGVPPRRAGPIKKPPQPVKVDELPPKSLEQGDETPKVAKADPLKTAKGKVGPKETPPGGNLSPAPRLRRDYSYERLGPASCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGGGAGGPNHPSAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPPPKEGVLAQVPLAPPPQPGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPVCSGWSPPAKSLVPKKPPAGPLPPGKEPVKEKLLAGPLSPMSRGGNMGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGADVKPPALGAPAPGSGPGPGSGPGPGTDETLAAAAAAAAPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKETPPAALLTAKAVGAPGGGAGGTAPGLSTVSRGDLSQRAKDLSKRSFSSQRPGMDRQNRRPGPGGKTGGGGGGSGGGGSGPGGRSGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNVTAPGGHPRPKPGPPQAPQGSSPRPPTRYDPPRASSVNSSDPHFEEPGPMVRGVGGTPRDSAGVNPFPPKRRERPPRKPELLQEEPVPASHSSGFLGSKPEVPGPQGEPRDSDAEALTPHIWDRLHNATSRKSYQPGSIEPWMEPLSPFEDVASTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGSAEGPPKRPGGPSPLNTVPGEAASGSEPSEPTRRRPPVPHDGDRKELPREQPLPPGPIGTERSQRTDRGPEPGPLRPAHRPGSQVEFGTTNKDSDLCLVVGDTLKGEKELTASATEAVPIPRDWELLPSASAPTEPQSKSLGSGHCGPEPSPSGQRLYPEVFYGSPGPPSSQVSGGAIDSQLHPNSGGFRPGTPSLHQYRSQPLYLPPGPAPPSALLSGVALKGQFLDFSALQATELGKLPAGGVLYPPPSFLYSAAFCPSPLPDTPLLQVRQDLPSPSDFYSNPLQPGGQSGFLPSGAPAQQMLLPVVESQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLPSSARPFPASLGRAELHPVELKPFQDYRKLSSNLGGPGSSRTPPTGRPFSGLSSRLKAPPSTYSGVFRTQRIDLYQQGSPPDALRWMPKPWERTGPPSREGPPRRAEEPGSRGDKEPGLPPPR", "length": 2174, "header": "tr|A0A9J7F0M1-1|A0A9J7F0M1_CRIGR Isoform 1 of Protein PRRC2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2a PE=4 SV=1 CANONICAL=A0A9J7F0M1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EYA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYA6/entry", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPTAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPGRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSEEEGAEGHKDSQSAVSEEPEADGKEGTSPGSLPPPPKTAWTENSRLPETEPAPATPKPPPPPPHRGPVGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPVNTPAPAPPPAVPKELPAPSLPPAPAPAPEKEPEEPAQAPPVQSTPSPGVVPAPTLASGGGTASSTSSGSLEGSPVEPQLPSKEGPEPAEEVPPPTTSPAPKVEPKGDGVGPTRQPPNQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQWQQQQQQQQQQGPAPPAPVPPSPPQPVTLGTVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAPPLLRERGTPPVDPKLAWVGDVFTTTPTDPRPLTSPLRQAADEDDKSMRSETPPVPPPPPYLANYPGFPENGAPGPPVSRFPLEEPAPPGPRPLPWPPSNDEAAKIQAPPPKKELPKEEPPQVSGPEAGRKPARGGGGQGPPPPRRENRTETRWGPRPGSCRRGIPPEETGVPPRRAGPIKKPPQPVKVDELPPKSLEQGDETPKVAKADPLKTAKGKVGPKETPPGGNLSPAPRLRRDYSYERLGPASCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGGGAGGPNHPSAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPPPKEGVLAQVPLAPPPQPGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPVCSGWSPPAKSLVPKKPPAGPLPPGKEPVKEKLLAGPLSPMSRGGNMGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGADVKPPALGAPAPGSGPGPGSGPGPGTDETLAAAAAAAAPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKETPPAALLTAKAVGAPGGGAGGTAPGLSTVSRGDLSQRAKDLSKRSFSSQRPGMDRQNRRPGPGGKTGGGGGGSGGGGSGPGGRSGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNVTAPGGHPRPKPGPPQAPQGSSPRPPTRYDPPRASSVNSSDPHFEEPGPMVRGVGGTPRDSAGVNPFPPKRRERPPRKPELLQEEPVPASHSSGFLGSKPEVPGPQGEPRDSDAEALTPHIWDRLHNATSRKSYQPGSIEPWMEPLSPFEDVASTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGSAEGPPKRPGGPSPLNTVPGEAASGSEPSEPTRRRPPVPHDGDRKELPREQPLPPGPIGTERSQRTDRGPEPGPLRPAHRPGSQVEFGTTNKDSDLCLVVGDTLKGEKELTASATEVSGGAIDSQLHPNSGGFRPGTPSLHQYRSQPLYLPPGPAPPSALLSGVALKGQFLDFSALQATELGKLPAGGVLYPPPSFLYSAAFCPSPLPDTPLLQVRQDLPSPSDFYSNPLQPGGQSGFLPSGAPAQQMLLPVVESQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLPSSARPFPASLGRAELHPVELKPFQDYRKLSSNLGGPGSSRTPPTGRPFSGLSSRLKAPPSTYSGVFRTQRIDLYQQGSPPDALRWMPKPWERTGPPSREGPPRRAEEPGSRGDKEPGLPPPR", "length": 2118, "header": "tr|A0A9J7EYA6-1|A0A9J7F0M1_CRIGR Computationally mapped isoform of Protein PRRC2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2a PE=4 SV=1 CANONICAL=A0A9J7F0M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0K5/entry", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPTAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPGRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSEEEGAEGHKDSQSAVSEEPEADGKEGTSPGSLPPPPKTAWTENSRLPETEPAPATPKPPPPPPHRGPVGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPVNTPAPAPPPAVPKELPAPSLPPAPAPAPEKEPEEPAQAPPVQSTPSPGVVPAPTLASGGGTASSTSSGSLEGSPVEPQLPSKEGPEPAEEVPPPTTSPAPKVEPKGDGVGPTRQPPNQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQWQQQQQQQQQQGPAPPAPVPPSPPQPVTLGTVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAPPLLRERGTPPVDPKLAWVGDVFTTTPTDPRPLTSPLRQAADEDDKSMRSETPPVPPPPPYLANYPGFPENGAPGPPVSRFPLEEPAPPGPRPLPWPPSNDEAAKIQAPPPKKELPKEEPPQVSGPEAGRKPARGGGGQGPPPPRRENRTETRWGPRPGSCRRGIPPEETGVPPRRAGPIKKPPQPVKVDELPPKSLEQGDETPKVAKADPLKTAKGKVGPKETPPGGNLSPAPRLRRDYSYERLGPASCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGGGAGGPNHPSAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPPPKEGVLAQVPLAPPPQPGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPVCSGWSPPAKSLVPKKPPAGPLPPGKEPVKEKLLAGPLSPMSRGGNMGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGADVKPPALGAPAPGSGPGPGSGPGPGTDETLAAAAAAAAPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKETPPAALLTAKAVGAPGGGAGGTAPGLSTVSRGDLSQRAKDLSKRSFSSQRPGMDRQNRRPGPGGKTGGGGGGSGGGGSGPGGRSGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNVTAPGGHPRPKPGPPQAPQGSSPRPPTRYDPPRASSVNSSDPHFEEPGPMVRGVGGTPRDSAGVNPFPPKRRERPPRKPELLQEEPVPASHSSGFLGSKPEVPGPQGEPRDSDAEALTPHIWDRLHNATSRKSYQPGSIEPWMEPLSPFEDVASTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGSAEGPPKRPGGPSPLNTVPGEAASGSEPSEPTRRRPPVPHDGDRKELPREQPLPPGPIGTERSQRTDRGPEPGPLRPAHRPGSQVEFGTTNKDSDLCLVVGDTLKGEKELTASATEAVPIPRDWELLPSASAPTEPQSKSLGSGHCGPEPSPSGQRLYPEVFYGSPGPPSSQVSGGAIDSQLHPNSGGFRPGTPSLHQYRSQPLYLPPGPAPPSALLSGVALKGQFLDFSALQATELGKLPAGGVLYPPPSFLYSAAFCPSPLPDTPLLQVRQDLPSPSDFYSNPLQPGGQSGFLPSGAPAQQMLLPVVESQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLPSSARPFPASLGRAEDYRKLSSNLGGPGSSRTPPTGRPFSGLSSRLKAPPSTYSGVFRTQRIDLYQQGSPPDALRWMPKPWERTGPPSREGPPRRAEEPGSRGDKEPGLPPPR", "length": 2164, "header": "tr|A0A9J7F0K5-1|A0A9J7F0K5_CRIGR Computationally mapped isoform of Protein PRRC2A isoform X3 OS=Cricetulus griseus OX=10029 GN=Prrc2a PE=4 SV=1 CANONICAL=A0A9J7F0M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1/entry", "sequence": { "sequence": 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"length": 2174, "header": "tr|A0A9J7F0M1-1|A0A9J7F0M1_CRIGR Isoform 1 of Protein PRRC2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2a PE=4 SV=1 CANONICAL=A0A9J7F0M1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1560, "start_aa": "Thr", "end_pos": 1560, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1560", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 555, "start_aa": "Thr", "end_pos": 555, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr555", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 606, "start_aa": "Thr", "end_pos": 606, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr606", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 623, "start_aa": "Thr", "end_pos": 623, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr623", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYA6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYA6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771999", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771999", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1003, "end_pos": 1005, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1452, "end_pos": 1454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1503, "end_pos": 1505, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1541, "end_pos": 1543, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1630, "end_pos": 1632, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" }, { "start_pos": 922, "end_pos": 924, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F0M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0M1" }, { "id": "PF07001", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAT2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 188, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 555, 606, 623, 1560 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1003, "end_pos": 1005 }, { "start_pos": 1452, "end_pos": 1454 }, { "start_pos": 1503, "end_pos": 1505 }, { "start_pos": 1541, "end_pos": 1543 }, { "start_pos": 1630, "end_pos": 1632 }, { "start_pos": 203, "end_pos": 205 }, { "start_pos": 75, "end_pos": 77 }, { "start_pos": 922, "end_pos": 924 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EYB6-1", "uniprot_ac": "A0A9J7EYB6", "uniprot_id": "A0A9J7EYB6_CRIGR", "mass": { "chemical_mass": 27288.0, "monoisotopic_mass": 27288.0 }, "refseq": { "ac": "XP_027242775", "name": "PACRG-like protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242775" }, "gene_names": [ { "name": "Pacrgl", "type": "recommended", "evidence": [ { "id": "A0A9J7EYB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYB6" } ] }, { "name": "Pacrgl", "type": "synonym", "evidence": [ { "id": "XP_027242775", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242775" } ] } ], "protein_names": [ { "name": "PACRG-like protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027242775", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242775" }, { "id": "A0A9J7EYB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYB6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027242775.1. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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] }, { "id": "cge:100758863", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758863", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0V9", "url": "https://www.orthodb.org/?gene=A0A9J7F0V9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22774:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22774:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24917", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24917", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244819", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244819", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EYK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0V9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITRVYCNRASIRIQWTKLKTHPICLCLDKVEVEMKTCEDPRPPNGQSPIALASGQSEYGFAEKVVEGMFITVNSIAVKIHAKAFHASFELWQLQGYSVNPNWQQSDLRLTRITDPRRGEVLTFKEITWQTLRIEADATDNGDQDPVTTPLRLITNQGRIQIALKRRTKDCNVVASKLTFLLDDLLWVLTDSQLKAMMKYAESLSEAMEKSAQQRKSLAPEPVQITPPAPSAQQTWAQAFGGGQGNSSSSSSRLSQYFEKFDVKEPSYHLLISRLDLHICDDSQAREPGVSANRLTGGAMQLTFRKMAFDYYPFHWAGDSCKHWVRHCEAMETRGHWAQQLVMEFQSKMEKWLEETSLKPLWCLGGDSVFRKKADSFSSPGKSPLDKSPAQGWQAAFGSPAWNRLRSSCLVVRVDDLDIHQVSTAGQPSKKPSTLLSCNRKRHHLPTQVAAIHVQFTEYYFPDNQELPVPCPNLYIQLNGLTFTVDPVSLLWGNLFCLDLYRSLEQFKAIYKLEDSRQKDEHLDIRLDAFLLKVSFPLEKREQAKLHRPQALVLSTSGLIATNTRHAPHCSCPDLQSLFRGFAAAEFFRSSYGHFPKAPGGFSLLHTLFVHHALQMDSLPAQPSSLPPQRPAASQDLWSLHFTQISLDFEGTENFKGHTLNFVAPFPLSIWACLPLRWQQAQARRLLLASEGRLKPSASFGSPVRSEALAPETVSHQRSKTERDLKSLLGFTDASKVLREGDAGVDHRGHVAELEGVADVHMLVHSPAPLQVRLDHYQYLALLRLKDVLQGLQEQLSNDTEAMMGSPLQDHTACIGVFFPSAEVALLMPPAPGTADADSAGSDTTSLIDSELSPSEDRELKSDASSDQGPVSPEKVLKDGSVENLDASQEIRPSDGTLQDLGPLARQPAGKSHEAVESLQAKKLSRTQTAGLPAALKSPADKEAAMNGQGEPIPLRNIEGELSSAIHMTKDATKEALHATVDLTKEAVSLTRDAFSLGRDRVTSTMHKMLSLPPTKEAVAKTDEGVSAPVSGGTARLRFFSMKRTVSQQSFDGVSVDSGGPEDRISVDSDGSDGFVMLLESESGPESVPSASVTSVLDDSGIQGSPVLDNCGQGLPETNSSVSASGDLILHSVSVLVLKVNEVSLGIEVRGEDLTVALQAEELALQQLGTVSLWQFLHGQCPGTSFQESSNPKAGHIRPAVGLRFEVGPGASVHSPLATQNGFLRFLLRGCDLELFTSVLNGLGPFLEDEEAPVVVPMQIELLDSSITLKDDIPPIYPTSPGPVPITVAVEHLVLKRNDDGVFHLGAPAPAPAPAQDRPLFQVPEKQQLPKEQVLLRPTGQSLGLQEEELPTLQQELMDTKQALTIANQDKEKLLQEIRKYNPLFEL", "length": 1443, "header": "tr|A0A9J7F0V9-1|A0A9J7F0V9_CRIGR Isoform 1 of UHRF1-binding protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Uhrf1bp1 PE=4 SV=1 CANONICAL=A0A9J7F0V9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EYK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK8/entry", "sequence": { "sequence": "MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITRVYCNRASIRIQWTKLKTHPICLCLDKVEVEMKTCEDPRPPNGQSPIALASGQSEYGFAEKVVEGMFITVNSIAVKIHAKAFHASFELWQLQGYSVNPNWQQSDLRLTRITDPRRGEVLTFKEITWQTLRIEADATDNGDQDPVTTPLRLITNQGRIQIALKRRTKDCNVVASKLTFLLDDLLWVLTDSQLKAMMKYAESLSEAMEKSAQQRKSLAPEPVQITPPAPSAQQTWAQAFGGGQGNSSSSSSRLSQYFEKFDVKEPSYHLLISRLDLHICDDSQAREPGDSCKHWVRHCEAMETRGHWAQQLVMEFQSKMEKWLEETSLKPLWCLGGDSVFRKKADSFSSPGKSPLDKSPAQGWQAAFGSPAWNRLRSSCLVVRVDDLDIHQVSTAGQPSKKPSTLLSCNRKRHHLPTQVAAIHVQFTEYYFPDNQELPVPCPNLYIQLNGLTFTVDPVSLLWGNLFCLDLYRSLEQFKAIYKLEDSRQKDEHLDIRLDAFLLKVSFPLEKREQAKLHRPQALVLSTSGLIATNTRHAPHCSCPDLQSLFRGFAAAEFFRSSYGHFPKAPGGFSLLHTLFVHHALQMDSLPAQPSSLPPQRPAASQDLWSLHFTQISLDFEGTENFKGHTLNFVAPFPLSIWACLPLRWQQAQARRLLLASEGRLKPSASFGSPVRSEALAPETVSHQRSKTERDLKSLLGFTDASKVLREGDAGVDHRGHVAELEGVADVHMLVHSPAPLQVRLDHYQYLALLRLKDVLQGLQEQLSNDTEAMMGSPLQDHTACIGVFFPSAEVALLMPPAPGTADADSAGSDTTSLIDSELSPSEDRELKSDASSDQGPVSPEKVLKDGSVENLDASQEIRPSDGTLQDLGPLARQPAGKSHEAVESLQAKKLSRTQTAGLPAALKSPADKEAAMNGQGEPIPLRNIEGELSSAIHMTKDATKEALHATVDLTKEAVSLTRDAFSLGRDRVTSTMHKMLSLPPTKEAVAKTDEGVSAPVSGGTARLRFFSMKRTVSQQSFDGVSVDSGGPEDRISVDSDGSDGFVMLLESESGPESVPSASVTSVLDDSGIQGSPVLDNCGQGLPETNSSVSASGDLILHSVSVLVLKVNEVSLGIEVRGEDLTVALQAEELALQQLGTVSLWQFLHGQCPGTSFQESSNPKAGHIRPAVGLRFEVGPGASVHSPLATQNGFLRFLLRGCDLELFTSVLNGLGPFLEDEEAPVVVPMQIELLDSSITLKDDIPPIYPTSPGPVPITVAVEHLVLKRNDDGVFHLGAPAPAPAPAQDRPLFQVPEKQQLPKEQVLLRPTGQSLGLQEEELPTLQQELMDTKQALTIANQDKEKLLQEIRKYNPLFEL", "length": 1414, "header": "tr|A0A9J7EYK8-1|A0A9J7F0V9_CRIGR Computationally mapped isoform of UHRF1-binding protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Uhrf1bp1 PE=4 SV=1 CANONICAL=A0A9J7F0V9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0V9/entry", "sequence": { "sequence": "MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITRVYCNRASIRIQWTKLKTHPICLCLDKVEVEMKTCEDPRPPNGQSPIALASGQSEYGFAEKVVEGMFITVNSIAVKIHAKAFHASFELWQLQGYSVNPNWQQSDLRLTRITDPRRGEVLTFKEITWQTLRIEADATDNGDQDPVTTPLRLITNQGRIQIALKRRTKDCNVVASKLTFLLDDLLWVLTDSQLKAMMKYAESLSEAMEKSAQQRKSLAPEPVQITPPAPSAQQTWAQAFGGGQGNSSSSSSRLSQYFEKFDVKEPSYHLLISRLDLHICDDSQAREPGVSANRLTGGAMQLTFRKMAFDYYPFHWAGDSCKHWVRHCEAMETRGHWAQQLVMEFQSKMEKWLEETSLKPLWCLGGDSVFRKKADSFSSPGKSPLDKSPAQGWQAAFGSPAWNRLRSSCLVVRVDDLDIHQVSTAGQPSKKPSTLLSCNRKRHHLPTQVAAIHVQFTEYYFPDNQELPVPCPNLYIQLNGLTFTVDPVSLLWGNLFCLDLYRSLEQFKAIYKLEDSRQKDEHLDIRLDAFLLKVSFPLEKREQAKLHRPQALVLSTSGLIATNTRHAPHCSCPDLQSLFRGFAAAEFFRSSYGHFPKAPGGFSLLHTLFVHHALQMDSLPAQPSSLPPQRPAASQDLWSLHFTQISLDFEGTENFKGHTLNFVAPFPLSIWACLPLRWQQAQARRLLLASEGRLKPSASFGSPVRSEALAPETVSHQRSKTERDLKSLLGFTDASKVLREGDAGVDHRGHVAELEGVADVHMLVHSPAPLQVRLDHYQYLALLRLKDVLQGLQEQLSNDTEAMMGSPLQDHTACIGVFFPSAEVALLMPPAPGTADADSAGSDTTSLIDSELSPSEDRELKSDASSDQGPVSPEKVLKDGSVENLDASQEIRPSDGTLQDLGPLARQPAGKSHEAVESLQAKKLSRTQTAGLPAALKSPADKEAAMNGQGEPIPLRNIEGELSSAIHMTKDATKEALHATVDLTKEAVSLTRDAFSLGRDRVTSTMHKMLSLPPTKEAVAKTDEGVSAPVSGGTARLRFFSMKRTVSQQSFDGVSVDSGGPEDRISVDSDGSDGFVMLLESESGPESVPSASVTSVLDDSGIQGSPVLDNCGQGLPETNSSVSASGDLILHSVSVLVLKVNEVSLGIEVRGEDLTVALQAEELALQQLGTVSLWQFLHGQCPGTSFQESSNPKAGHIRPAVGLRFEVGPGASVHSPLATQNGFLRFLLRGCDLELFTSVLNGLGPFLEDEEAPVVVPMQIELLDSSITLKDDIPPIYPTSPGPVPITVAVEHLVLKRNDDGVFHLGAPAPAPAPAQDRPLFQVPEKQQLPKEQVLLRPTGQSLGLQEEELPTLQQELMDTKQALTIANQDKEKLLQEIRKYNPLFEL", "length": 1443, "header": "tr|A0A9J7F0V9-1|A0A9J7F0V9_CRIGR Isoform 1 of UHRF1-binding protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Uhrf1bp1 PE=4 SV=1 CANONICAL=A0A9J7F0V9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1335, "start_aa": "Thr", "end_pos": 1335, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1335", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 282, "start_aa": "Thr", "end_pos": 282, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr282", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYK8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758863", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758863", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone deacetylase binding", "id": "GO:0042826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042826", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0V9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1175, "end_pos": 1177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 854, "end_pos": 856, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 282, 1335 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1175, "end_pos": 1177 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 26, "end_pos": 28 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 854, "end_pos": 856 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EYM0-1", "uniprot_ac": "A0A9J7EYM0", "uniprot_id": "A0A9J7EYM0_CRIGR", "mass": { "chemical_mass": 347308.0, "monoisotopic_mass": 347308.0 }, "refseq": { "ac": "XP_027246666", "name": "protein furry homolog-like isoform X10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246666" }, "gene_names": [ { "name": "Fryl", "type": "recommended", "evidence": [ { "id": "A0A9J7EYM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ] }, { "name": "Fryl", "type": "synonym", "evidence": [ { "id": "XP_027246666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246666" } ] } ], "protein_names": [ { "name": "Protein furry homolog-like isoform X10", "type": "synonym", "evidence": [ { "id": "A0A9J7EYM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0/entry#names_and_taxonomy" } ] }, { "name": "protein furry homolog-like isoform X10", "type": "synonym", "evidence": [ { "id": "XP_027246666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246666" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246666" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fryl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0", "locus": {} } ], "crossref": [ { "id": "100753564", "url": "https://www.ncbi.nlm.nih.gov/gene/100753564", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025481", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025481", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029473", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029473", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753564", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753564", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYM0", "url": "https://www.orthodb.org/?gene=A0A9J7EYM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12295", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12295", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12295:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12295:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14222", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14222", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14228", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14228", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246666", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2Z1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCT7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HGD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HGD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J695", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J695-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J695-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3089, "header": "tr|A0A9J7EYM0-1|A0A9J7EYM0_CRIGR Isoform 1 of Protein furry homolog-like isoform X10 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EYM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3089, "header": "tr|A0A9J7EYM0-1|A0A9J7EYM0_CRIGR Isoform 1 of Protein furry homolog-like isoform X10 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z1/entry", "sequence": { "sequence": "MSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3032, "header": "tr|A0A9J7F2Z1-1|A0A9J7F2Z1_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN2/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3088, "header": "tr|A0A9J7HBN2-1|A0A9J7HBN2_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X11 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC70/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3074, "header": "tr|A0A9J7HC70-1|A0A9J7HC70_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X17 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCT7/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3072, "header": "tr|A0A9J7HCT7-1|A0A9J7HCT7_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X19 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEH6/entry", "sequence": { "sequence": "MVFNVLLTQLRPQYSEGRASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3077, "header": "tr|A0A9J7HEH6-1|A0A9J7HEH6_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X16 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HF29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF29/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3088, "header": "tr|A0A9J7HF29-1|A0A9J7HF29_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X12 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HF85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF85/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3083, "header": "tr|A0A9J7HF85-1|A0A9J7HF85_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X14 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HGD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGD4/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3068, "header": "tr|A0A9J7HGD4-1|A0A9J7HGD4_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X18 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J3M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3M9/entry", "sequence": { "sequence": "MSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 2970, "header": "tr|A0A9J7J3M9-1|A0A9J7J3M9_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X8 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J695-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J695/entry", "sequence": { "sequence": "MLSLQDSVFFEISIKSLLKSWSCSSSAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAEGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3083, "header": "tr|A0A9J7J695-1|A0A9J7J695_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X15 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP0/entry", "sequence": { "sequence": "MLQVDKDSRWILSKFGVFSTNSVPQRPFLSASAPVSKVNKFCAASNFHSTSGRKNITMSNITIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQNGTEDESYEYRPRSSTKSKGDEQHRERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTNTGNVHVIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKMPSNNSIRKQIETLQNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGDPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLSRLTVHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQAAQMYNKTQDSQHGIANGSPHPPPPERNPYSTVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFILLEVPKGDDELAIDVMDRLSPSILESFIHLTGADQTALLYCPSSVDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDVNSPINAKKVNATTSSDSYIGLWRNYLILCCSTAASPSPTHSPSASTGPMRCSPPETLASTPDSGYSIDAKIIGIPSPSALFKHIVPMMRSESMEVTESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSVFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLSSDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSRRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQAMLHYLLPWMNNIELVDFKPLPSGRRQDEDEDDSLKDRELMVTSRRWLRGEGWGSPQATAMVLNNLMYMTAKYGDELAWSEVENVWTTLADGWPKNLKIILHFLISICGVNSEPSLLPYVKKVIVYLGRDKTMQLLEELVGELQLTDPVSSGVTHMDNPPYYRITSSCKIPSVTSGTTSSSNTMVAPTDGNADSKALKENFEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSNWRLKVMEHNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVRQTAHSEYTFTGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHATLLSEVDLSVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSNAGIHLERHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLSANTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAIDTLAETMKHYDLLSALSQTSYHDPVMGNKYAANRKSTGQLNLSTGPINSSSYLGYNSNTRSNSLRLSLAGDRRGDRRRSNTLDIMDGRINHSGSLARTRSLSSLREKGMYDAQPTTEPTNLMATIFWIATSLLESDYEYEYLLALRLLNKLLIHLPLDKSESREKIENVQSKLKWTNFPGLQQLFLKGFTSVSTQEMTVHLLSQLISVSKHTLVDPSQLSGFPLNILCLLPHLIQHFDSPTQFCKETASRIAKVCAEEKCPTLVNLAHMMSLYSTHTYSRDCSNWINVVCRYLHDSFSDATFSLVTYLAELLEKGLSSMQQSLLQIIYSLLSHIDLSAAPAKQFNLEIIKIIGKYVQSPYWKEALNILKLVVSRSASLVVPNDIPKAYGVDVGSPEISFTKIFNNVSKELPGKTLDFHFDISETPIIGNKYGGQHSAAGRNGKAKVIAVTRSTSSTSSGSTSNALVPVSWKRPQLSQRRTREKLMSVLSLCGPESGLPKNPSVVFSSNEDLEGGDQQTSLISTTEDIIQEEEVAVEDNSSEQQFGVFKDFDFLDVELEDAEGESMDNFNWGVRRRSLDSIDKGDTPSLQEYPCSSSTPSLTLTNQEDTDESSEEEAALTASQILSRTQMLNSDCVADDVMPGHQDLLQSQDSASSNTTEDALRIRDEPPSLEACLDNASSQLPEDTSSVLKEEHVTAFEDEGSYIIQDQQDQLVCQGILDLEETDMPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPVAYEDEEEAWRCHVNQMLSDTDGSCAVFTFHVFSRLFQTIQRRFGEITKEAVGFLGESLQRIGTKFKSSLEVMMTCSECPTVFVDAETLMACGLLETLKFSVLELQEHLDTYNTKKEAAEQWLENCKRTFGAKEDIYRINTNAQQMGILAELELCRRLYKLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGTLKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRTLWPNDIFGSCEDDPVQTLLHIYFHHQTLGQTGSFAVIGSNLDMSEANYKLMELNLEIRESLRMVQSYPLLAQAKTVGNTASTGF", "length": 3087, "header": "tr|A0A9J7KFP0-1|A0A9J7KFP0_CRIGR Computationally mapped isoform of Protein furry homolog-like isoform X13 OS=Cricetulus griseus OX=10029 GN=Fryl PE=4 SV=1 CANONICAL=A0A9J7EYM0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1568, "start_aa": "Thr", "end_pos": 1568, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1568", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2405, "start_aa": "Thr", "end_pos": 2405, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2405", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2552, "start_aa": "Thr", "end_pos": 2552, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2552", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 544, "start_aa": "Thr", "end_pos": 544, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr544", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753564", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753564", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ], "pmid": "" }, { "name": "site of polarized growth", "id": "GO:0030427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030427", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1083, "end_pos": 1085, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1089, "end_pos": 1091, "annotation": "n_glycosylation_sequon" }, { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1801, "end_pos": 1803, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1996, "end_pos": 1998, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2003, "end_pos": 2005, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2045, "end_pos": 2047, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2360, "end_pos": 2362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2493, "end_pos": 2495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2611, "end_pos": 2613, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2632, "end_pos": 2634, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2943, "end_pos": 2945, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" }, { "start_pos": 728, "end_pos": 730, "annotation": 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"https://www.uniprot.org/uniprotkb/A0A9J7EYM0" }, { "id": "PF14225", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cell morphogenesis protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 2078, "end_pos": 2330, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7EYM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" }, { "id": "PF14222", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cell morphogenesis protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 174, "end_pos": 721, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7EYM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYM0" }, { "id": "PF19421", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19421" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein furry C-terminal", "eco_id": "ECO_0000259", "start_pos": 2362, "end_pos": 3088, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 544, 1568, 2405, 2552 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1083, "end_pos": 1085 }, { "start_pos": 1089, "end_pos": 1091 }, { "start_pos": 143, "end_pos": 145 }, { "start_pos": 1801, "end_pos": 1803 }, { "start_pos": 1996, "end_pos": 1998 }, { "start_pos": 2003, "end_pos": 2005 }, { "start_pos": 2045, "end_pos": 2047 }, { "start_pos": 2360, "end_pos": 2362 }, { "start_pos": 2493, "end_pos": 2495 }, { "start_pos": 2611, 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"date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EYP7-1", "uniprot_ac": "A0A9J7EYP7", "uniprot_id": "A0A9J7EYP7_CRIGR", "mass": { "chemical_mass": 328711.0, "monoisotopic_mass": 328711.0 }, "refseq": { "ac": "XP_027242820", "name": "LOW QUALITY PROTEIN: biorientation of chromosomes in cell division protein 1-like 1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242820" }, "gene_names": [ { "name": "Bod1l1", "type": "recommended", "evidence": [ { "id": "A0A9J7EYP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7" } ] }, { "name": "Bod1l1", "type": "synonym", "evidence": [ { "id": "XP_027242820", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242820" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: biorientation of chromosomes in cell division protein 1-like 1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027242820", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242820" }, { "id": "A0A9J7EYP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242820", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242820" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bod1l1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7", "locus": {} } ], "crossref": [ { "id": "100769598", "url": "https://www.ncbi.nlm.nih.gov/gene/100769598", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055264", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055264", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769598", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769598", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYP7", "url": "https://www.orthodb.org/?gene=A0A9J7EYP7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47391", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47391", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47391:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47391:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027242820", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242820", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EYP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATNPQPQPPPXPPPPPPQPQPPPPPPGPGXGAGASGPGGAGAGAGDPQLVAMIVNHLKSQGLFDQFRRDCLADVDTKPAYQNLRQRVDNFVANHLATHTWSPHLNKNQLRNNIRQQVLKSGMLESGIDRIISQVVDPKINHTFRPQVEKAVHEFLATLNHKEEATGSTAPDDEKPDSSIITQGVPAPGPSANVASDAMSILETITSLNQEANAARASTEMSNAKANERIPRKLSSQPSTDISTDKERGSEDGADREKATPDSGAEGIETAPKSEEPGDLPCPVEETRNHTKENSLLCLSKDAQQESSDQKNKSVEKGEKKPDSSEKGERKKEKKEKTEKKIDHSKRSEDTQRAKDEKQAKDKEVESMKLPSEKINRARAAEGTKEDCSLMDSDVDGLTDITVSSVHTSDLSSFEEDTEEEVVMSDSMEEGEITSDDEEKNKQNKTKTQTSDSSDGKARSGRHAYVHKPYLYSKYYSDSDDELTVEQRRQSIAKEKEERLLRRRINREKLEEKRKQKAEKTKSSKVKSQGKSSVEVEESSAKNLELKAPRIKEVLKERKVLEKKVALSKRRRKDSRNVDENSKKKQQTEEDSKEALKTSEHCDKEKASFKDLKHAHGKSEPSKPPRRLSESLHSADENKTELKVEREHKRRTSTPVVLEGAQEETDMRDGKKQAERPEVNVDEPPKQKSTLKNEKYQKKDEPETHGKGLPKKEAKSTKEKPEKEKAQSEEKLSSKHKYKGDAVHKTGDETELHSSEKGLKVEENAQKQSHQTKLSSDDKTERKSKHRNERKLSVLGRDGRPVSEYTIKTDEHARKDKKEKHLPSEKAKAEHKSRRSSDSKLQKDVISAKQHSVTLQKRSESCSEEKCESDSTNAESSLKPEELHKERRKMKSLLEEKPMVKSKSKGQGKQVKVAETDSQEGVTKQVITPKPDKEKNTEDSDPERQRKSKPEDRSLEEPVTEPALENAAPSTHGAQKDSGHKAKLPLVKEKHKADKDSTSSRLERKFSDGHRSRSVKHSNKDMKKKEENKPDDKDAKEVDSSHEKGKGNGSVIEKKLSRRLCENRRGSISQEITKEDKLAATILGTASSSSLQRPKKSSETTSIPEQEPMEIDSEAVMENVSELSKTQDISSNSSQQDTDFENVTKHKGAAGVLKDELRTSMADSKPAAVTCKSGRGLAVTSNSEKHADHKSTVTKKVHIQNAPSKSTREREPVQRGAHDVNVDSEGSRRVPYRAPQESEKAQKNLKGTSRATEECGPQRDASFECSADSDLSSSSGSTVVPQKELHDSSTVPIADRETISEGGTAGTSLVNHSDSPNQSVTIKKSEGHKTNGSKEGSDGSTVDMPSKANISSKRHLSEDDQATLLYSKEGKASIPLASKSMGMTVENKNISKQRNLMGTAKKESDLNIEPDVKQDSAAVENVVDLSTRKEAETVRRKHSRDPDESKKIPTDVERKTEDNEVDTSARRDTASTSQQRPGKMERVATGSGRRDKAFIATSTEGKDKGIILNPIKAGDATTTSSATGEKGMALPCTSIEADEGFTMGSCPTNHPLQVGAEASECTVFAAAEEGRGVVTEGFAESETLLTSSKEGESGECSVAESEDRVAGPLAAHTIQTEANVNSVTTEEKDDAVTSAGSEEKCGGSSCTVEGTAAFIGEVESDGAVTSAGTEIRAGSVSSEDVVGSQENRTQVGPKKETEGTVTCTEAKGRSDNFSFCLVTGVGSQEQRVVTGADVAQVNDDKPREASANQEGDGSGNDGTEGESAVTSTGITEEDGEGSANCTGSEDSSEGCAISSETEENAESAMDSTEAKDITNLPLVAAGPCDDEDIVTSTGAKEEDEEGEGVVTSTGRGNETGHASTCTGIEESEGMLVCESGEGGGQIGPAVEHVDAEAGATTMNTNDSNVDSMSGTKKEIKDTDICSSAKGIVESSVTSAFAGNSDGPPVLGDSEGPVASATSHHNDSQFTRKETVEDTTISTGLVRGSDDVLVSGAVPECEVGHISPTEKDEGIITSVENEDCDGLMASTASSAVSNKDNLAGGKSQGNGLMISTSTNDCTLQVSAIIDVKRGHLCTLSTEGNMEGTRIHMEGFEAPMPSAISGNETQLTSASRSEEKDECAMISTSIGEEFEVPISSAVTITCAESEQSVAAGEESTTDPVLVSTEDFEVPMPSAPTEAENPLASTSKEEKDECALISTSIAEECEASVSGVSENAPSVTDGNAVISTSSVEDCEGSVSSAVPQEAVCPSVMPVEETGDTAMISTSTSEGREAVMIGTVPADEDQATTVRGEDLSDAAIISTSTTECVLMCTSLSRHKESQPAMNNPEGNGGHLATKQSKCELPMPSLMTENNCQCPGPFTTGKVSPLMAVSTRGEHDRLPACEPSAGQGQPGTASCVGEEERHGKECPGQDLNSKERNALLSSVQTSNKNAEAEAVGDSNAASSIARRDSERNANSVSDKLSTTSCLKGPEQMSAEDSSGNSHCLAAVNTGAKTDDMLPIRDAASEYPSDQQVPENTLKTTTKCITGQESKMAPSHTAVFTTACHVAPSTLEREGDLTAKSDHSGTWTSERSAEKTGHVPGARQSLHREGNLDVTVPPEENACGIGNVESPPKGIGESGLSANLATETSVHSEEETNYGVAATSENPCVGRPSGSGEQVKDASLVNKSQNVENSDSRINEEIHCESQNKGEVLSGKKDLTEALSSCSVEADPEEVEEEERHMSKRNRKQHYPSSEDELDDSPDVLVSRIETARRQYSETELHDTKEENSGDLEEFSKTSSKTDSVALEDRDDFSSSEGTGERTELNEDDSVRSQEDDHPIIIKRKRGRPRKYPAETALKIKEDFKTETDISTVEQSSPSSKLKTSQADESNKEMADLQEKSTSNDDSEDKIASMRRRGRKPKRSLTSSDDAESSEPERKRQKSVSETSEDKKDQESDEEEEEEEEDEPLGATTRSTTRSEAQRKHHSKPSTRATSKLGIPETVSPRNRQKLAKEKLPTSEKVSKSPPLGRSKAQLSPSVKRKREVSPPGARTRGQQRVDETPLKKAKR", "length": 3046, "header": "tr|A0A9J7EYP7-1|A0A9J7EYP7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: biorientation of chromosomes in cell division protein 1-like 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Bod1l1 PE=3 SV=1 CANONICAL=A0A9J7EYP7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EYP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7/entry", "sequence": { "sequence": "MATNPQPQPPPXPPPPPPQPQPPPPPPGPGXGAGASGPGGAGAGAGDPQLVAMIVNHLKSQGLFDQFRRDCLADVDTKPAYQNLRQRVDNFVANHLATHTWSPHLNKNQLRNNIRQQVLKSGMLESGIDRIISQVVDPKINHTFRPQVEKAVHEFLATLNHKEEATGSTAPDDEKPDSSIITQGVPAPGPSANVASDAMSILETITSLNQEANAARASTEMSNAKANERIPRKLSSQPSTDISTDKERGSEDGADREKATPDSGAEGIETAPKSEEPGDLPCPVEETRNHTKENSLLCLSKDAQQESSDQKNKSVEKGEKKPDSSEKGERKKEKKEKTEKKIDHSKRSEDTQRAKDEKQAKDKEVESMKLPSEKINRARAAEGTKEDCSLMDSDVDGLTDITVSSVHTSDLSSFEEDTEEEVVMSDSMEEGEITSDDEEKNKQNKTKTQTSDSSDGKARSGRHAYVHKPYLYSKYYSDSDDELTVEQRRQSIAKEKEERLLRRRINREKLEEKRKQKAEKTKSSKVKSQGKSSVEVEESSAKNLELKAPRIKEVLKERKVLEKKVALSKRRRKDSRNVDENSKKKQQTEEDSKEALKTSEHCDKEKASFKDLKHAHGKSEPSKPPRRLSESLHSADENKTELKVEREHKRRTSTPVVLEGAQEETDMRDGKKQAERPEVNVDEPPKQKSTLKNEKYQKKDEPETHGKGLPKKEAKSTKEKPEKEKAQSEEKLSSKHKYKGDAVHKTGDETELHSSEKGLKVEENAQKQSHQTKLSSDDKTERKSKHRNERKLSVLGRDGRPVSEYTIKTDEHARKDKKEKHLPSEKAKAEHKSRRSSDSKLQKDVISAKQHSVTLQKRSESCSEEKCESDSTNAESSLKPEELHKERRKMKSLLEEKPMVKSKSKGQGKQVKVAETDSQEGVTKQVITPKPDKEKNTEDSDPERQRKSKPEDRSLEEPVTEPALENAAPSTHGAQKDSGHKAKLPLVKEKHKADKDSTSSRLERKFSDGHRSRSVKHSNKDMKKKEENKPDDKDAKEVDSSHEKGKGNGSVIEKKLSRRLCENRRGSISQEITKEDKLAATILGTASSSSLQRPKKSSETTSIPEQEPMEIDSEAVMENVSELSKTQDISSNSSQQDTDFENVTKHKGAAGVLKDELRTSMADSKPAAVTCKSGRGLAVTSNSEKHADHKSTVTKKVHIQNAPSKSTREREPVQRGAHDVNVDSEGSRRVPYRAPQESEKAQKNLKGTSRATEECGPQRDASFECSADSDLSSSSGSTVVPQKELHDSSTVPIADRETISEGGTAGTSLVNHSDSPNQSVTIKKSEGHKTNGSKEGSDGSTVDMPSKANISSKRHLSEDDQATLLYSKEGKASIPLASKSMGMTVENKNISKQRNLMGTAKKESDLNIEPDVKQDSAAVENVVDLSTRKEAETVRRKHSRDPDESKKIPTDVERKTEDNEVDTSARRDTASTSQQRPGKMERVATGSGRRDKAFIATSTEGKDKGIILNPIKAGDATTTSSATGEKGMALPCTSIEADEGFTMGSCPTNHPLQVGAEASECTVFAAAEEGRGVVTEGFAESETLLTSSKEGESGECSVAESEDRVAGPLAAHTIQTEANVNSVTTEEKDDAVTSAGSEEKCGGSSCTVEGTAAFIGEVESDGAVTSAGTEIRAGSVSSEDVVGSQENRTQVGPKKETEGTVTCTEAKGRSDNFSFCLVTGVGSQEQRVVTGADVAQVNDDKPREASANQEGDGSGNDGTEGESAVTSTGITEEDGEGSANCTGSEDSSEGCAISSETEENAESAMDSTEAKDITNLPLVAAGPCDDEDIVTSTGAKEEDEEGEGVVTSTGRGNETGHASTCTGIEESEGMLVCESGEGGGQIGPAVEHVDAEAGATTMNTNDSNVDSMSGTKKEIKDTDICSSAKGIVESSVTSAFAGNSDGPPVLGDSEGPVASATSHHNDSQFTRKETVEDTTISTGLVRGSDDVLVSGAVPECEVGHISPTEKDEGIITSVENEDCDGLMASTASSAVSNKDNLAGGKSQGNGLMISTSTNDCTLQVSAIIDVKRGHLCTLSTEGNMEGTRIHMEGFEAPMPSAISGNETQLTSASRSEEKDECAMISTSIGEEFEVPISSAVTITCAESEQSVAAGEESTTDPVLVSTEDFEVPMPSAPTEAENPLASTSKEEKDECALISTSIAEECEASVSGVSENAPSVTDGNAVISTSSVEDCEGSVSSAVPQEAVCPSVMPVEETGDTAMISTSTSEGREAVMIGTVPADEDQATTVRGEDLSDAAIISTSTTECVLMCTSLSRHKESQPAMNNPEGNGGHLATKQSKCELPMPSLMTENNCQCPGPFTTGKVSPLMAVSTRGEHDRLPACEPSAGQGQPGTASCVGEEERHGKECPGQDLNSKERNALLSSVQTSNKNAEAEAVGDSNAASSIARRDSERNANSVSDKLSTTSCLKGPEQMSAEDSSGNSHCLAAVNTGAKTDDMLPIRDAASEYPSDQQVPENTLKTTTKCITGQESKMAPSHTAVFTTACHVAPSTLEREGDLTAKSDHSGTWTSERSAEKTGHVPGARQSLHREGNLDVTVPPEENACGIGNVESPPKGIGESGLSANLATETSVHSEEETNYGVAATSENPCVGRPSGSGEQVKDASLVNKSQNVENSDSRINEEIHCESQNKGEVLSGKKDLTEALSSCSVEADPEEVEEEERHMSKRNRKQHYPSSEDELDDSPDVLVSRIETARRQYSETELHDTKEENSGDLEEFSKTSSKTDSVALEDRDDFSSSEGTGERTELNEDDSVRSQEDDHPIIIKRKRGRPRKYPAETALKIKEDFKTETDISTVEQSSPSSKLKTSQADESNKEMADLQEKSTSNDDSEDKIASMRRRGRKPKRSLTSSDDAESSEPERKRQKSVSETSEDKKDQESDEEEEEEEEDEPLGATTRSTTRSEAQRKHHSKPSTRATSKLGIPETVSPRNRQKLAKEKLPTSEKVSKSPPLGRSKAQLSPSVKRKREVSPPGARTRGQQRVDETPLKKAKR", "length": 3046, "header": "tr|A0A9J7EYP7-1|A0A9J7EYP7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: biorientation of chromosomes in cell division protein 1-like 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Bod1l1 PE=3 SV=1 CANONICAL=A0A9J7EYP7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769598", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769598", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1048, "end_pos": 1050, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1119, "end_pos": 1121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1132, "end_pos": 1134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1142, "end_pos": 1144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1311, "end_pos": 1313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1317, "end_pos": 1319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1331, "end_pos": 1333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1349, "end_pos": 1351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1389, "end_pos": 1391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1687, "end_pos": 1689, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1712, "end_pos": 1714, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1780, "end_pos": 1782, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1853, "end_pos": 1855, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1901, "end_pos": 1903, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1961, "end_pos": 1963, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2101, "end_pos": 2103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2664, "end_pos": 2666, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EYP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYP7" }, { "id": "PF05205", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05205" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BOD1/SHG1", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 149, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1048, "end_pos": 1050 }, { "start_pos": 1119, "end_pos": 1121 }, { "start_pos": 1132, "end_pos": 1134 }, { "start_pos": 1142, "end_pos": 1144 }, { "start_pos": 1311, "end_pos": 1313 }, { "start_pos": 1317, "end_pos": 1319 }, { "start_pos": 1331, "end_pos": 1333 }, { "start_pos": 1349, "end_pos": 1351 }, { "start_pos": 1389, "end_pos": 1391 }, { "start_pos": 141, "end_pos": 143 }, { "start_pos": 1687, "end_pos": 1689 }, { "start_pos": 1712, "end_pos": 1714 }, { 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EYQ9-1", "uniprot_ac": "A0A9J7EYQ9", "uniprot_id": "A0A9J7EYQ9_CRIGR", "mass": { "chemical_mass": 21089.0, "monoisotopic_mass": 21089.0 }, "refseq": { "ac": "XP_003509255", "name": "probable ribonuclease 11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509255" }, "gene_names": [ { "name": "Rnase11", "type": "recommended", "evidence": [ { "id": "A0A9J7EYQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9" } ] }, { "name": "Rnase11", "type": "synonym", "evidence": [ { "id": "XP_003509255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509255" } ] } ], "protein_names": [ { "name": "Probable ribonuclease 11", "type": "synonym", "evidence": [ { "id": "A0A9J7EYQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9/entry#names_and_taxonomy" } ] }, { "name": "probable ribonuclease 11", "type": "synonym", "evidence": [ { "id": "XP_003509255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509255" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614668.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509255" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rnase11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9", "locus": {} } ], "crossref": [ { "id": "A0A9J7EYQ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EYQ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754826", "url": "https://www.ncbi.nlm.nih.gov/gene/100754826", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754826", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754826", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYQ9", "url": "https://www.orthodb.org/?gene=A0A9J7EYQ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11437:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11437:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003509255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509255", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EYQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVFVLLLGLGSVLVVPSEGTTTRIREKLSQEEMQHAAKQTVEPSMNSTLSDKNISLGVPKNVMSASPPTSRRLYFVTPKGNPLSNEQNCLNGPRVWRKVLDMNESCQLVNNFIHGSTDVIHGVPEATSWKWGQSPSLSCCESLRLEHTMCKVTAGQQCPRCQKHSVTSLKRALTVLTSHSLMSWLVSGSKL", "length": 192, "header": "tr|A0A9J7EYQ9-1|A0A9J7EYQ9_CRIGR Isoform 1 of Probable ribonuclease 11 OS=Cricetulus griseus OX=10029 GN=Rnase11 PE=3 SV=1 CANONICAL=A0A9J7EYQ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EYQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9/entry", "sequence": { "sequence": "MAVFVLLLGLGSVLVVPSEGTTTRIREKLSQEEMQHAAKQTVEPSMNSTLSDKNISLGVPKNVMSASPPTSRRLYFVTPKGNPLSNEQNCLNGPRVWRKVLDMNESCQLVNNFIHGSTDVIHGVPEATSWKWGQSPSLSCCESLRLEHTMCKVTAGQQCPRCQKHSVTSLKRALTVLTSHSLMSWLVSGSKL", "length": 192, "header": "tr|A0A9J7EYQ9-1|A0A9J7EYQ9_CRIGR Isoform 1 of Probable ribonuclease 11 OS=Cricetulus griseus OX=10029 GN=Rnase11 PE=3 SV=1 CANONICAL=A0A9J7EYQ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYQ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EYW8-1", "uniprot_ac": "A0A9J7EYW8", "uniprot_id": "A0A9J7EYW8_CRIGR", "mass": { "chemical_mass": 60203.0, "monoisotopic_mass": 60203.0 }, "refseq": { "ac": "XP_016830229", "name": "CDKN2A-interacting protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830229" }, "gene_names": [ { "name": "Cdkn2aip", "type": "recommended", "evidence": [ { "id": "A0A9J7EYW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYW8" } ] }, { "name": "Cdkn2aip", "type": "synonym", "evidence": [ { "id": "XP_016830229", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830229" } ] } ], "protein_names": [ { "name": "CDKN2A-interacting protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016830229", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830229" } ] }, { "name": "CDKN2A-interacting protein isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7EYW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYW8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 525 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613593.1) and transcript sequence (IACG01048862.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016830229.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830229", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830229" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EYW8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYW8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdkn2aip", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYW8", "locus": {} } ], "crossref": [ { "id": "A0A9J7EYW8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EYW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755619", "url": "https://www.ncbi.nlm.nih.gov/gene/100755619", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR014720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755619", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755619", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EYW8", "url": "https://www.orthodb.org/?gene=A0A9J7EYW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16148", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16148", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16148:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16148:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11952", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11952", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016830229", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830229", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EYW8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F433", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F433-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F433-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQEVSEYLSQNPRVAAWVETLRCEGETDKHWRHRREFLLRNAGDLVPATPGEAADAESGSRNRQLQQLVSFSMAWANHVFLGCRYPQKVMDKILSMAEGIKVTDAPIHTTRDELVAKVKKRGISSSNEGIEEPSKKRAIEGKNNSAVERDHGKKSAKTDRSSAQQENSSASSGSSTKSESSGASARSSSTSEGDRSVCSQSSSNSSQVTTAGAGKASDPEAPDKHGSASFVSSLLKSSMNSHVTQSTDSRQQSGSPKKSALEGSSVSASQSSSEIEVPLLGSSGSSEVELPLLSSKSSPETASSGLTSKTSSEASVSSSVPKNTSSTSGTSLLTPKGSSTNASLLTSKSTSQVAASLLASKSSSQSSGSVASKSTSLAGMSQLASKSSSQSSTSQLPSKSTSQSSESSVKFSCRKLTNEDVKQKQPFFNRLYKTVAWKLVAVGGFSPTVNHGELLNAAIEALKATLDVFFVPLKELADLPQNKSSQESIVCELRCKSVYLGTGCGKSKENAKAVASREALKLFLKKKVVVKICKRKYRGSEVEDLVLLDEESRPLNLPPALKHPQELL", "length": 569, "header": "tr|A0A9J7EYW8-1|A0A9J7EYW8_CRIGR Isoform 1 of CDKN2A-interacting protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Cdkn2aip PE=3 SV=1 CANONICAL=A0A9J7EYW8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EYW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYW8/entry", "sequence": { "sequence": "MAQEVSEYLSQNPRVAAWVETLRCEGETDKHWRHRREFLLRNAGDLVPATPGEAADAESGSRNRQLQQLVSFSMAWANHVFLGCRYPQKVMDKILSMAEGIKVTDAPIHTTRDELVAKVKKRGISSSNEGIEEPSKKRAIEGKNNSAVERDHGKKSAKTDRSSAQQENSSASSGSSTKSESSGASARSSSTSEGDRSVCSQSSSNSSQVTTAGAGKASDPEAPDKHGSASFVSSLLKSSMNSHVTQSTDSRQQSGSPKKSALEGSSVSASQSSSEIEVPLLGSSGSSEVELPLLSSKSSPETASSGLTSKTSSEASVSSSVPKNTSSTSGTSLLTPKGSSTNASLLTSKSTSQVAASLLASKSSSQSSGSVASKSTSLAGMSQLASKSSSQSSTSQLPSKSTSQSSESSVKFSCRKLTNEDVKQKQPFFNRLYKTVAWKLVAVGGFSPTVNHGELLNAAIEALKATLDVFFVPLKELADLPQNKSSQESIVCELRCKSVYLGTGCGKSKENAKAVASREALKLFLKKKVVVKICKRKYRGSEVEDLVLLDEESRPLNLPPALKHPQELL", "length": 569, "header": "tr|A0A9J7EYW8-1|A0A9J7EYW8_CRIGR Isoform 1 of CDKN2A-interacting protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Cdkn2aip PE=3 SV=1 CANONICAL=A0A9J7EYW8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F433-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F433/entry", "sequence": { "sequence": "MAQEVSEYLSQNPRVAAWVETLRCEGETDKHWRHRREFLLRNAGDLVPATPGEAADAESGSRNRQLQQLVSFSMAWANHVFLGCRYPQKVMDKILSMAEGIKVTDAPIHTTRDELVAKKG", "length": 120, "header": "tr|A0A9J7F433-1|A0A9J7F433_CRIGR Computationally mapped isoform of CDKN2A-interacting protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Cdkn2aip PE=3 SV=1 CANONICAL=A0A9J7EYW8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027242588.1. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EZ30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ30" }, { "id": "PF25340", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25340" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RFX1-4/6/8-like BCD", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 362, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZ73-1", "uniprot_ac": "A0A9J7EZ73", "uniprot_id": "A0A9J7EZ73_CRIGR", "mass": { "chemical_mass": 22105.0, "monoisotopic_mass": 22105.0 }, "refseq": { "ac": "XP_027247104", "name": "uncharacterized protein LOC113832826", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247104" }, "gene_names": [ { "name": "LOC113832826", "type": "recommended", "evidence": [ { "id": "A0A9J7EZ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ73" } ] }, { "name": "LOC113832826", "type": "synonym", "evidence": [ { "id": "XP_027247104", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247104" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113832826", "type": "synonym", "evidence": [ { "id": "A0A9J7EZ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ73/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113832826", "type": "synonym", "evidence": [ { "id": "XP_027247104", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247104" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 18% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027247104.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247104", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247104" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ73" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832826", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ73", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZ73", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZ73", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832826", "url": "https://www.ncbi.nlm.nih.gov/gene/113832826", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832826", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832826", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZ73", "url": "https://www.orthodb.org/?gene=A0A9J7EZ73", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15191", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15191", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15191:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15191:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027247104", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247104", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCWPRAWSQILLPVFLSLALIQLFISFSDHKFTKTHRNWNRRSEQIERECAEKQTCPLCTKDRRCIWCREERLCKKYCFPYSDCKFNSMFWANCRVDLFGIMMLILVALLAIGFLWYCLAYYLYMEEHAFYLARNVRVPGYNWNASKCFHLFDRLYPRLFQGLTARSHAFTVDHRFQNFVKR", "length": 182, "header": "tr|A0A9J7EZ73-1|A0A9J7EZ73_CRIGR Isoform 1 of Uncharacterized protein LOC113832826 OS=Cricetulus griseus OX=10029 GN=LOC113832826 PE=4 SV=1 CANONICAL=A0A9J7EZ73-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZ73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ73/entry", "sequence": { "sequence": "MCWPRAWSQILLPVFLSLALIQLFISFSDHKFTKTHRNWNRRSEQIERECAEKQTCPLCTKDRRCIWCREERLCKKYCFPYSDCKFNSMFWANCRVDLFGIMMLILVALLAIGFLWYCLAYYLYMEEHAFYLARNVRVPGYNWNASKCFHLFDRLYPRLFQGLTARSHAFTVDHRFQNFVKR", "length": 182, "header": "tr|A0A9J7EZ73-1|A0A9J7EZ73_CRIGR Isoform 1 of Uncharacterized protein LOC113832826 OS=Cricetulus griseus OX=10029 GN=LOC113832826 PE=4 SV=1 CANONICAL=A0A9J7EZ73-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246274", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246274" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ86" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Il17d", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ86", "locus": {} } ], "crossref": [ { "id": "100763580", "url": "https://www.ncbi.nlm.nih.gov/gene/100763580", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763580", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763580", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZ86", "url": "https://www.orthodb.org/?gene=A0A9J7EZ86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF06083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246274", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246274", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGTPVWTLVVGFLLALAPGGAAGALRXGRRPARPRDCADRPEELLEQLYGRLAVGVLSAFHHTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARFPRYLPEAYCLCRGCLTGLFGEEDFRFRSAPVYSPAVVLRRTAACAGGRSVYAEHYVTIPVGCTCVPEPDKASDSANSSMDKPGAKLLLGPSDRPAGR", "length": 209, "header": "tr|A0A9J7EZ86-1|A0A9J7EZ86_CRIGR Isoform 1 of LOW QUALITY PROTEIN: interleukin-17D isoform X2 OS=Cricetulus griseus OX=10029 GN=Il17d PE=3 SV=1 CANONICAL=A0A9J7EZ86-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZ86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ86/entry", "sequence": { "sequence": "MLGTPVWTLVVGFLLALAPGGAAGALRXGRRPARPRDCADRPEELLEQLYGRLAVGVLSAFHHTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARFPRYLPEAYCLCRGCLTGLFGEEDFRFRSAPVYSPAVVLRRTAACAGGRSVYAEHYVTIPVGCTCVPEPDKASDSANSSMDKPGAKLLLGPSDRPAGR", "length": 209, "header": "tr|A0A9J7EZ86-1|A0A9J7EZ86_CRIGR Isoform 1 of LOW QUALITY PROTEIN: interleukin-17D isoform X2 OS=Cricetulus griseus OX=10029 GN=Il17d PE=3 SV=1 CANONICAL=A0A9J7EZ86-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ86" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cytokine activity", "id": "GO:0005125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005125", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247147" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4H5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam71f1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4H5", "locus": {} } ], "crossref": [ { "id": "A0A9J7F4H5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F4H5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760841", "url": "https://www.ncbi.nlm.nih.gov/gene/100760841", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"tr|A0A9J7F4H5-1|A0A9J7F4H5_CRIGR Isoform 1 of Protein FAM71F1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZ93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ93/entry", "sequence": { "sequence": "MMTSVPPRKPWWNSKKTVKVIRSYPTFPSLNAWEKFRGLLPVDGEPNPGVGLGVEEGLLCQIVHSPEFNLFPNSVVFESNFVQVRRSRHWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSTAPSIILKSILPLKFVELQICDHHERILRLRTVTEKIYFLKLHPDHPETVFLFWIRLVQILQKGLSITTKDPSILVTHCLVPKSLCNPCGKSELVQKKPPCSRPSESLMQLMAQGESEALSQIFADLHQQKQYRRSKEMQINKTSSEKATPSEDSIPCTRDLSWRDAFTYGEWERENPSGPQPLSLLGTLAASSRPRLSLTGGTVMMGLIWWSSRDRLEFKLRIGTVSWGPQGNSRGPHPLPFCLLVFASYAIE", "length": 390, "header": "tr|A0A9J7EZ93-1|A0A9J7F4H5_CRIGR Computationally mapped isoform of Protein FAM71F1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1N8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1N8/entry", "sequence": { "sequence": "MPGKNSGASCLWMGSRTQEWAWVWRKDCSARSFILQNSTCFLTLWCLKATLSRRSRHWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSTAPSIILKSILPLKFVELQICDHHERILRLRTVTEKIYFLKLHPDHPETVFLFWIRLVQILQKGLSITTKDPSILVTHCLVPKSLCNPCGKSELVQKKPPCSRPSESLMQLMAQGESEALSQIFADLHQQKQYSSRRSKEMQINKTSSEKATPSEDSIPCTRDLSWRDAFTYGEWERENPSGPQPLSLLGTLAASSRPRLSLTGGTVMMGLIWWSSRDRLEFKLRIGTVSWGPQGNSRGPHPLPFCLLVFASYAIE", "length": 360, "header": "tr|A0A9J7F1N8-1|A0A9J7F1N8_CRIGR Computationally mapped isoform of Protein FAM71F1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3S7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3S7/entry", "sequence": { "sequence": "MMTSVPPRKPWWNSKKTVKVIRSYPTFPSLNAWEKFRGLLPVDGEPNPGVGLGVEEGLLCQIVHSPEFNLFPNSVVFESNFVQVRRSRHWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSTAPSIILKSILPLKFVELQICDHHERILRLRTVTEKIYFLKLHPDHPETVFLFWIRLVQILQKGLSITTKDPSILVTHCLVPKSLCNPCGKSELVQKKPPCSRPSESLMQLMAQGESEALSQIFADLHQQKQYRRSKEMQINKTSSGISI", "length": 286, "header": "tr|A0A9J7F3S7-1|A0A9J7F3S7_CRIGR Computationally mapped isoform of Protein FAM71F1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3U3/entry", "sequence": { "sequence": "MMTSVPPRKPWWNSKKTVKVIRSYPTFPSLNAWEKFRGLLPVDGEPNPGVGLGVEEGLLCQIVHSPEFNLFPNSVVFESNFVQVRRSRHWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSTAPSIILKSILPLKFVELQICDHHERILRLRTVTEKIYFLKLHPDHPETVFLFWIRLVQILQKGLSITTKDPSILVTHCLVPKSLCNPCGKSELVQKKPPCSRPSESLMQLMAQGESEALSQIFADLHQQKQYSSRRSKEMQINKTSSGISI", "length": 288, "header": "tr|A0A9J7F3U3-1|A0A9J7F3U3_CRIGR Computationally mapped isoform of Protein FAM71F1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4G2/entry", "sequence": { "sequence": "MMTSVPPRKPWWNSKKTVKVIRSYPTFPSLNAWEKFRGLLPVDGEPNPGVGLGVEEGLLCQIVHSPEFNLFPNSVVFESNFVQVRRSRHWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSTAPSIILKSILPLKFVELQICDHHERILRLRTVTEKIYFLKLHPDHPETVFLFWIRLVQILQKGLSITTKDPSILVTHCLVPKSLCNPCGKSELVQKKPPCSRPSESLMQLMAQGESEALSQIFADLHQQKQYSSRRSKEMQINKTSSEKATPSEDSIPCTRDLSWRDAFTYGEWERENPSGPQPLSLLGTLAASSRPRLSLTGGISI", "length": 344, "header": "tr|A0A9J7F4G2-1|A0A9J7F4G2_CRIGR Computationally mapped isoform of Protein FAM71F1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4H5/entry", "sequence": { "sequence": "MMTSVPPRKPWWNSKKTVKVIRSYPTFPSLNAWEKFRGLLPVDGEPNPGVGLGVEEGLLCQIVHSPEFNLFPNSVVFESNFVQVRRSRHWKEIYKASNTMALGVTSSVPCLPLPNILLMARVKWHQGQSQTWNRPSTAPSIILKSILPLKFVELQICDHHERILRLRTVTEKIYFLKLHPDHPETVFLFWIRLVQILQKGLSITTKDPSILVTHCLVPKSLCNPCGKSELVQKKPPCSRPSESLMQLMAQGESEALSQIFADLHQQKQYSSRRSKEMQINKTSSEKATPSEDSIPCTRDLSWRDAFTYGEWERENPSGPQPLSLLGTLAASSRPRLSLTGGTVMMGLIWWSSRDRLEFKLRIGTVSWGPQGNSRGPHPLPFCLLVFASYAIE", "length": 392, "header": "tr|A0A9J7F4H5-1|A0A9J7F4H5_CRIGR Isoform 1 of Protein FAM71F1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA10/entry", "sequence": { "sequence": "MPGKNSGASCLWMGSRTQEWAWVWRKDCSARSFILQNSTCFLTLWCLKATLSRVKWHQGQSQTWNRPSTAPSIILKSILPLKFVELQICDHHERILRLRTVTEKIYFLKLHPDHPETVFLFWIRLVQILQKGLSITTKDPSILVTHCLVPKSLCNPCGKSELVQKKPPCSRPSESLMQLMAQGESEALSQIFADLHQQKQYSSRRSKEMQINKTSSEKATPSEDSIPCTRDLSWRDAFTYGEWERENPSGPQPLSLLGTLAASSRPRLSLTGGTVMMGLIWWSSRDRLEFKLRIGTVSWGPQGNSRGPHPLPFCLLVFASYAIE", "length": 324, "header": "tr|A0A9J7JA10-1|A0A9J7JA10_CRIGR Computationally mapped isoform of Protein FAM71F1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Fam71f1 PE=3 SV=1 CANONICAL=A0A9J7F4H5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ93" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ93" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760841", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760841", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2KIP3-1", "protein_name": "Golgi-associated RAB2 interactor protein 1B", "gene_name": "GARIN1B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSSVPHRKTWNKSKKTVKVTRSYPTFPSLNAWEEFRGLFPVDGEPNPGVGLGVEEGLLGQMVHSPEFNLFPESVVFESNFVQVRKGRDWIDIYKTYNTMALGVTSSVPCLPLPNILLMASVKWHHGQNQTWNKPSTAPKIILKRILPLKFVELQVSDHLQRVLRLRTVTEKIYYLKLHPDHPKTVFHFWIRLIQILQKGLSITTKDPRILVTHCLVPKNSCSPSGDSQLVQKKPQASQPSESLMQLMAKGESEALCQIFVDLHQHNLFSSRSSKKTENKKDSSGKKTSPSEDSIPCTRDLSWRDSFTYGEWERENPSGPQSLSLLSTLAASTGPQLAPLIGSSI", "length": 345 }, "evidence": [ { "id": "A0A9J7F4H5", "url": "https://omabrowser.org/oma/group/A0A9J7F4H5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q68FV5-1", "protein_name": "Golgi-associated RAB2 interactor protein 1B", "gene_name": "Garin1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMTSVPPRKTWWKSKKTVKVRRSYSTFPSLNAWEKFRGLLPVDGETNPGVGLGVEEGLLCQMVHSPEFNLFPNSVVFESNFVQVRRSRDWKEIYKASNTMALGVTSSVPCLPLPNILLMARVIWHQGQSQTWNRPSTVPSINLKSILPLKFVELQIWDHHERILRLRTVTEKIYFLKLHPDHPETVFRFWIRLVQILHKGLSITTKDPTILVTHCLVPKSLCSPGGKSELVQKNSKGLQPSESLTHLMAQGESEALSQIFSDLHQQKQYSSSRSEKVQINKTSSEKATPCEDSIPCTCDLNWRDAFMFGEWERENPSGPQPHSLLSTLAASSRPRLSLIGGNSI", "length": 344 }, "evidence": [ { "id": "A0A9J7F4H5", "url": "https://omabrowser.org/oma/group/A0A9J7F4H5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96KD3-1", "protein_name": "Golgi-associated RAB2 interactor protein 1B", "gene_name": "GARIN1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLSSFPHRKTWRKSKKTVKVTRSYPTFPSLNAWEEFRGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQPLSLLSTLAASTGPQLAPPIGNSI", "length": 344 }, "evidence": [ { "id": "A0A9J7F4H5", "url": "https://omabrowser.org/oma/group/A0A9J7F4H5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4H5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatid development", "id": "GO:0007286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007286", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4H5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F4H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4H5" }, { "id": "PF12480", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgi associated RAB2 interactor protein-like Rab2B-binding", "eco_id": "ECO_0000259", "start_pos": 141, "end_pos": 208, "start_aa": "Ile", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 280, "end_pos": 282 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZ95-1", "uniprot_ac": "A0A9J7EZ95", "uniprot_id": "A0A9J7EZ95_CRIGR", "mass": { "chemical_mass": 63100.0, "monoisotopic_mass": 63100.0 }, "refseq": { "ac": "XP_027243303", "name": "zinc finger protein 503 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243303" }, "gene_names": [ { "name": "Znf503", "type": "recommended", "evidence": [ { "id": "A0A9J7EZ95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ] }, { "name": "Znf503", "type": "synonym", "evidence": [ { "id": "XP_027243303", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243303" } ] } ], "protein_names": [ { "name": "Zinc finger protein 503 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7EZ95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 503 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027243303", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243303" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243303", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243303" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf503", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZ95", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZ95", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764134", "url": "https://www.ncbi.nlm.nih.gov/gene/100764134", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051520", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051520", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764134", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764134", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZ95", "url": "https://www.orthodb.org/?gene=A0A9J7EZ95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12522", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12522", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12522:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12522:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243303", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243303", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTAPSLSALRSSKHSGGGGSGGGSGSSGSADPAWTSALSGNCSGHGPGSSPAGSTKPFVHAVPPSDPLRQANRLPIKVLKMLTARTGHILHPEYLQPLPSTPVSPIELDAKKSPLALLAQTCSQIGKPDPSPSSKLSSVASNGGGAGGAGSGAGGDKDAKSGPLKLSDIGVEDKSSFKPYSKPGSDKKEPGGGGGGGGGGGGGGGVSAEKSGFRVPSATCQPFTPRTGSPSSSASACSPGGMLPSAGGGPEGKDDKKDPEAGGGGSSKGAGGSSADGVPAGLAHGRISCGGGINVDVNQHSDGGPGGKALGSDCGSSSGSSSGSGPSAPTSSSVLGSGLVAPVSPYKPGQTVFPLPPAGMTYPGSLAGAYAGYPPQFLPHGVALDPTKPGSLVGAQLAAAAAGSLGCSKPAGSSPLAGASPPSVMTASLCRDPYCLSYHCASHLAGAAAASASCAHDPAAAAAALKSGYPLVYPTHPLHGVHSSLTAAAAAGATPPSLAGHPLYPYGFMLPNDPLPHICNWVSANGPCDKRFATSEELLSHLRTHTAFPRTDKLLSGYPSSSSLASAAAAAMACHMHIPTSGAPGSPGTLALRSPHHALGLSSRYHPYSKSPLPTPGAPVPVPAATGPYYSPYALYGQRLTTASALGYQ", "length": 650, "header": "tr|A0A9J7EZ95-1|A0A9J7EZ95_CRIGR Isoform 1 of Zinc finger protein 503 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf503 PE=3 SV=1 CANONICAL=A0A9J7EZ95-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZ95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95/entry", "sequence": { "sequence": "MSTAPSLSALRSSKHSGGGGSGGGSGSSGSADPAWTSALSGNCSGHGPGSSPAGSTKPFVHAVPPSDPLRQANRLPIKVLKMLTARTGHILHPEYLQPLPSTPVSPIELDAKKSPLALLAQTCSQIGKPDPSPSSKLSSVASNGGGAGGAGSGAGGDKDAKSGPLKLSDIGVEDKSSFKPYSKPGSDKKEPGGGGGGGGGGGGGGGVSAEKSGFRVPSATCQPFTPRTGSPSSSASACSPGGMLPSAGGGPEGKDDKKDPEAGGGGSSKGAGGSSADGVPAGLAHGRISCGGGINVDVNQHSDGGPGGKALGSDCGSSSGSSSGSGPSAPTSSSVLGSGLVAPVSPYKPGQTVFPLPPAGMTYPGSLAGAYAGYPPQFLPHGVALDPTKPGSLVGAQLAAAAAGSLGCSKPAGSSPLAGASPPSVMTASLCRDPYCLSYHCASHLAGAAAASASCAHDPAAAAAALKSGYPLVYPTHPLHGVHSSLTAAAAAGATPPSLAGHPLYPYGFMLPNDPLPHICNWVSANGPCDKRFATSEELLSHLRTHTAFPRTDKLLSGYPSSSSLASAAAAAMACHMHIPTSGAPGSPGTLALRSPHHALGLSSRYHPYSKSPLPTPGAPVPVPAATGPYYSPYALYGQRLTTASALGYQ", "length": 650, "header": "tr|A0A9J7EZ95-1|A0A9J7EZ95_CRIGR Isoform 1 of Zinc finger protein 503 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf503 PE=3 SV=1 CANONICAL=A0A9J7EZ95-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 495, "start_aa": "Thr", "end_pos": 495, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr495", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 616, "start_aa": "Thr", "end_pos": 616, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr616", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764134", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764134", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EZ95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ95" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 518, "end_pos": 547, "start_aa": "His", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 495, 616 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZE3-1", "uniprot_ac": "A0A9J7EZE3", "uniprot_id": "A0A9J7EZE3_CRIGR", "mass": { "chemical_mass": 75994.0, "monoisotopic_mass": 75994.0 }, "refseq": { "ac": "XP_027243608", "name": "transmembrane and coiled-coil domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243608" }, "gene_names": [ { "name": "Tmco3", "type": "recommended", "evidence": [ { "id": "A0A9J7EZE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3" } ] }, { "name": "Tmco3", "type": "synonym", "evidence": [ { "id": "XP_027243608", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243608" } ] } ], "protein_names": [ { "name": "Transmembrane and coiled-coil domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7EZE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3/entry#names_and_taxonomy" } ] }, { "name": "transmembrane and coiled-coil domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027243608", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243608" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243608", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243608" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmco3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3", "locus": {} } ], "crossref": [ { "id": "100757323", "url": "https://www.ncbi.nlm.nih.gov/gene/100757323", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757323", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757323", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZE3", "url": "https://www.orthodb.org/?gene=A0A9J7EZE3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16254", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16254", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16254:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16254:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00999", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00999", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243608", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243608", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0J0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA07", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA07-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA97", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKVLDESLFWMLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRKQWVLDSCRRLTGLLRQKNVVLNKLKNAIRAVEKDASLSGEEKLFQVHTFEIFQKELNESENSVFQAIYGLQRALQGDYRDVVNMKESSKQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEASSKQNITKREVEDGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLMGSVRGDKEAGDIDYSTVLLGMLVMQDVQLGLFIAVMPTLIQAGASTSSSIVMEVLRILFLIGQILFSLAAVFLLCLIIKTYLIGPYHRKLRVESKGSKEILILGLSAFIFLMLTVTELLDVSMELGCFLAGALISSQGHVVTEEIMAYIEPIRDFLAIIFFASIGLHVFPTFVIYELTVLVFLTLSVVVMKFVLAVLVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGIISREVYLLILSVTTLSLLLAPVLWKAAITKCVPRPERRSSL", "length": 678, "header": "tr|A0A9J7EZE3-1|A0A9J7EZE3_CRIGR Isoform 1 of Transmembrane and coiled-coil domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco3 PE=4 SV=1 CANONICAL=A0A9J7EZE3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3/entry", "sequence": { "sequence": "MKVLDESLFWMLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRKQWVLDSCRRLTGLLRQKNVVLNKLKNAIRAVEKDASLSGEEKLFQVHTFEIFQKELNESENSVFQAIYGLQRALQGDYRDVVNMKESSKQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEASSKQNITKREVEDGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLMGSVRGDKEAGDIDYSTVLLGMLVMQDVQLGLFIAVMPTLIQAGASTSSSIVMEVLRILFLIGQILFSLAAVFLLCLIIKTYLIGPYHRKLRVESKGSKEILILGLSAFIFLMLTVTELLDVSMELGCFLAGALISSQGHVVTEEIMAYIEPIRDFLAIIFFASIGLHVFPTFVIYELTVLVFLTLSVVVMKFVLAVLVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGIISREVYLLILSVTTLSLLLAPVLWKAAITKCVPRPERRSSL", "length": 678, "header": "tr|A0A9J7EZE3-1|A0A9J7EZE3_CRIGR Isoform 1 of Transmembrane and coiled-coil domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco3 PE=4 SV=1 CANONICAL=A0A9J7EZE3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0J0/entry", "sequence": { "sequence": "MKVLDESLFWMLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRKQWVLDSCRRLTGLLRQKNVVLNKLKNAIRAVEKDASLSGEEKLFQVHTFEIFQKELNESENSVFQAIYGLQRALQGDYRDVVNMKESSKQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEASSKQNITKREVEDGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLMGSVRGDKEGDIDYSTVLLGMLVMQDVQLGLFIAVMPTLIQAGASTSSSIVMEVLRILFLIGQILFSLAAVFLLCLIIKTYLIGPYHRKLRVESKGSKEILILGLSAFIFLMLTVTELLDVSMELGCFLAGALISSQGHVVTEEIMAYIEPIRDFLAIIFFASIGLHVFPTFVIYELTVLVFLTLSVVVMKFVLAVLVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGIISREVYLLILSVTTLSLLLAPVLWKAAITKCVPRPERRSSL", "length": 677, "header": "tr|A0A9J7F0J0-1|A0A9J7F0J0_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmco3 PE=4 SV=1 CANONICAL=A0A9J7EZE3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA07-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA07/entry", "sequence": { "sequence": "MKVLDESLFWMLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRKQWVLDSCRRLTGLLRQKNVVLNKLKNAIRAVEKDASLSGEEKLFQVHTFEIFQKELNESENSVFQAIYGLQRALQGDYRDVVNMKESSKQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEASSKQNITKREVEDGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLMGSVRGDKEAGDIDYSTVLLGMLVMQDVQLGLFIAVMPTLIQAGASTSSRASCVPHLCDLRVDCAGIPHPVCGRHEVCIGSVGLVSHPAKEQPVHQVDCISGPGTGQRVLLCSGESSTESGHHLERGVPPHSKCDHTEPLTCPSAVESGHYKVCAKTREEVKSLTAPDDNGLWAGGPSQEFGVLRWFVAAPSVLLAYLQRQSSVNKEAVSSCLLAFLQILLSCFSGVIYLQSVDYVQSFDTAFYSHLSYFALMCLFLKNEDY", "length": 661, "header": "tr|A0A9J7HA07-1|A0A9J7HA07_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmco3 PE=4 SV=1 CANONICAL=A0A9J7EZE3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA97/entry", "sequence": { "sequence": "MKVLDESLFWMLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRKQWVLDSCRRLTGLLRQKNVVLNKLKNAIRAVEKDASLSGEEKLFQVHTFEIFQKELNESENSVFQAIYGLQRALQGDYRDVVNMKESSKQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEASSKQNITKREVEDGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLMGSVRGDKEGDIDYSTVLLGMLVMQDVQLGLFIAVMPTLIQAGASTSSRASCVPHLCDLRVDCAGIPHPVCGRHEVCIGSVGLVSHPAKEQPVHQVDCISGPGTGQRVLLCSGESSTESGHHLERGVPPHSKCDHTEPLTCPSAVESGHYKVCAKTREEVKSLTAPDDNGLWAGGPSQEFGVLRWFVAAPSVLLAYLQRQSSVNKEAVSSCLLAFLQILLSCFSGVIYLQSVDYVQSFDTAFYSHLSYFALMCLFLKNEDY", "length": 660, "header": "tr|A0A9J7HA97-1|A0A9J7HA97_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmco3 PE=4 SV=1 CANONICAL=A0A9J7EZE3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757323", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757323", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "potassium:proton antiporter activity", "id": "GO:0015386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015386", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EZE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZE3" }, { "id": "PF00999", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00999" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cation/H+ exchanger transmembrane", "eco_id": "ECO_0000259", "start_pos": 280, "end_pos": 661, "start_aa": "Leu", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 174, "end_pos": 176 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 230, "end_pos": 232 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F4N1-1", "uniprot_ac": "A0A9J7F4N1", "uniprot_id": "A0A9J7F4N1_CRIGR", "mass": { "chemical_mass": 227613.0, "monoisotopic_mass": 227613.0 }, "refseq": { "ac": "XP_016830387", "name": "nuclear pore complex protein Nup205 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830387" }, "gene_names": [ { "name": "Nup205", "type": "recommended", "evidence": [ { "id": "A0A9J7F4N1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1" } ] }, { "name": "Nup205", "type": "synonym", "evidence": [ { "id": "XP_016830387", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830387" } ] } ], "protein_names": [ { "name": "Nuclear pore complex protein Nup205 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7F4N1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1/entry#names_and_taxonomy" } ] }, { "name": "nuclear pore complex protein Nup205 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016830387", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830387" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 42 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613823.1) and transcript sequence (JI874311.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830387", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830387" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nup205", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1", "locus": {} } ], "crossref": [ { "id": "100773309", "url": "https://www.ncbi.nlm.nih.gov/gene/100773309", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773309", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773309", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZF6", "url": "https://www.orthodb.org/?gene=A0A9J7EZF6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F4N1", "url": "https://www.orthodb.org/?gene=A0A9J7F4N1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31344", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31344", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31344:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31344:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016830387", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830387", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALLAVNSAASLWGPYKDIWHTVGNALWRRQPEAVHLLDMILKKHKPDFISLFKNPPKNVQQHEKIQKASTEGVAIQGQQGTRLLPEQLIKEAFIISDLFDIGELSAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKTLIQSRRGKTWTLELSPELVSITTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRERGLGSEKHRKEVSDLIKECRQSLAESLFAWACQSPLGKDDTLLLIGHLERVTVEANGSLDAVNLALLMALLYCFDTSFMEQSTEERDDMIHQLPLLTERQYIATIHSRLQDSQPWKLPGLQATVRLAWALALRGISQLPDVSALAEFTEADEAIAELAIADNVFLFLTESVVLSENFCQEEFYIRRTHNLITDFLAFMPMKVKQLKNRADEDARMIHMSIQMGNEPPMSLRRDLEHLMLLIGELYKKNPFHLELALEYWCPSEPLQTPTIMGSYLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLLLYHEHLRKDLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQCSIPPVLKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRVPSQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQFVELQGEEIIAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPGKKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVSPLEQLLQGINPRTKKADNVVNIARYLYHGNSNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSVSQKLMAGFVECLDSEDAEEFVRVEEGSESEKKVAAIRHETRIHILNLLITSLERNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGTEGRTGPVAVQEYPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQHLPFSNKEYEISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGMEDENRSVSGFLHFDTATKVRRKILSILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTICNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTILQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQELIQAEDRQLIIRDLLQDVHDKVLDDEAAQELMPVVAGAVFTLTAHLSQAVRTEQKQPLVSGPGEAHYAFMLDSSFTSPPAAESRPVGFASIGDSSLHIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPEDVFSKLQRENMAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLKVLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKLQQGALELLRSGVVVRLAQCQVYDMRPEMDPHGMFGMRDPPMFIPTPVDRYRQILLPALQLCQVILTSSMAQHLQAAGQVLQFLISHSDTIQAILRCQDVSAGSLQELALLTGIISKAALPGMLSELDVDVNEGSLMELQGHIGRFQRQCLGLLSRFGGSDRLRQFKFQDGNVEGDRVSKKDEVELAMQQICANVMEYCQSLMLQSSPAFQSAVCLFTPSLSETTNRDGPRQDTQVPMVPYWRLPGLGIIVYLLKQSASDFFSYYDSHRRSVNKLQNVEQLPPDEIKELCQSVMPAGVDKISTAQKCVLARRRLVKLINNRAKLLSLCSFIIETCLFILWRHLEYYLLHCTPTDSQDSLFACRSFFKNRRLQDSFSTEPNLDFRSGLALVSQHDIDQLQSDAINAFGESLQKKLLDIEGLYSKVRSRYSFIQALVRRIRGLLRISRS", "length": 2012, "header": "tr|A0A9J7F4N1-1|A0A9J7F4N1_CRIGR Isoform 1 of Nuclear pore complex protein Nup205 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nup205 PE=3 SV=1 CANONICAL=A0A9J7F4N1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZF6/entry", "sequence": { "sequence": "MAALLAVNSAASLWGPYKDIWHTVGNALWRRQPEAVHLLDMILKKHKPDFISLFKNPPKNVQQHEKIQKASTEGVAIQGQQGTRLLPEQLIKEAFIISDLFDIGELSAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKTLIQSRRGKTWTLELSPELVSITTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRERGLGSEKHRKEVSDLIKECRQSLAESLFAWACQSPLGKDDTLLLIGHLERVTVEANGSLDAVNLALLMALLYCFDTSFMEQSTEERDDMIHQLPLLTERQYIATIHSRLQDSQPWKLPGLQATVRLAWALALRGISQLPDVSALAEFTEADEAIAELAIADNVFLFLTESVVLSENFCQEEFYIRRTHNLITDFLAFMPMKVKQLKNRADEDARMIHMSIQMGNEPPMSLRRDLEHLMLLIGELYKKNPFHLELALEYWCPSEPLQTPTIMGSYLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLLLYHEHLRKDLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQCSIPPVLKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRVPSQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQFVELQGEEIIAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPGKKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVSPLEQLLQGINPRTKKADNVVNIARYLYHGNSNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSVSQKLMAGFVECLDSEDAEEFVRVEEGSESEKKVAAIRHETRIHILNLLITSLERNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGTEGRTGPVAVQEYPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQHLPFSNKEYEISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGMEDENRSVSGFLHFDTATKVRRKILSILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTICNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTILQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQELIQAEDRQLIIRDLLQDVHDKVLDDEAAQELMPVVAGAVFTLTAHLSQAVRTEQKQPLVSGPGEAHYAFMLDSSFTSPPAAESRPVGFASIGDSSLHIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPEDVFSKLQRENMAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLKVLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKLQQGALELLRSGVVVRLAQCQVYDMRPEMDPHGMFGMRDPPMFIPTPVDRYRQILLPALQLCQVILTSSMAQHLQAAGQVLQFLISHSDTIQAILRCQDVSAGSLQELALLTGIISKAALPGMLSELDVDVNEGSLMELQGHIGRFQRQCLGLLSRFGGSDRLRQFKFQDGNVEGDRVSKKDEVELAMQQICANVMEYCQSLMLQSSPAFQSAVCLFTPSLSETTNRDGPRQDTQVPMVPYWRLPGLGIIVYLLKQSASDFFSYYDSHRRSVNKLQNVEQLPPDEIKELCQSVMPAGVDKISTAQKCVLARRRLVKLINNRAKLLSLCSFIIETCLFILWRHLEYYLLHCTPTDSQDSLFACRSFFKNRRLQEPNLDFRSGLALVSQHDIDQLQSDAINAFGESLQKKLLDIEGLYSKVRSRYSFIQALVRRIRGLLRISRS", "length": 2007, "header": "tr|A0A9J7EZF6-1|A0A9J7F4N1_CRIGR Computationally mapped isoform of Nuclear pore complex protein Nup205 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nup205 PE=3 SV=1 CANONICAL=A0A9J7F4N1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1/entry", "sequence": { "sequence": "MAALLAVNSAASLWGPYKDIWHTVGNALWRRQPEAVHLLDMILKKHKPDFISLFKNPPKNVQQHEKIQKASTEGVAIQGQQGTRLLPEQLIKEAFIISDLFDIGELSAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKTLIQSRRGKTWTLELSPELVSITTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRERGLGSEKHRKEVSDLIKECRQSLAESLFAWACQSPLGKDDTLLLIGHLERVTVEANGSLDAVNLALLMALLYCFDTSFMEQSTEERDDMIHQLPLLTERQYIATIHSRLQDSQPWKLPGLQATVRLAWALALRGISQLPDVSALAEFTEADEAIAELAIADNVFLFLTESVVLSENFCQEEFYIRRTHNLITDFLAFMPMKVKQLKNRADEDARMIHMSIQMGNEPPMSLRRDLEHLMLLIGELYKKNPFHLELALEYWCPSEPLQTPTIMGSYLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLLLYHEHLRKDLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQCSIPPVLKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRVPSQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQFVELQGEEIIAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPGKKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVSPLEQLLQGINPRTKKADNVVNIARYLYHGNSNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSVSQKLMAGFVECLDSEDAEEFVRVEEGSESEKKVAAIRHETRIHILNLLITSLERNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGTEGRTGPVAVQEYPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQHLPFSNKEYEISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGMEDENRSVSGFLHFDTATKVRRKILSILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTICNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTILQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQELIQAEDRQLIIRDLLQDVHDKVLDDEAAQELMPVVAGAVFTLTAHLSQAVRTEQKQPLVSGPGEAHYAFMLDSSFTSPPAAESRPVGFASIGDSSLHIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWERLTAPEDVFSKLQRENMAIIESYGAALMEVVCRDACDGHEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLKVLVDSLVEDDRTLQSLLTPQPPLLKALYTYESKMAFLTRVAKLQQGALELLRSGVVVRLAQCQVYDMRPEMDPHGMFGMRDPPMFIPTPVDRYRQILLPALQLCQVILTSSMAQHLQAAGQVLQFLISHSDTIQAILRCQDVSAGSLQELALLTGIISKAALPGMLSELDVDVNEGSLMELQGHIGRFQRQCLGLLSRFGGSDRLRQFKFQDGNVEGDRVSKKDEVELAMQQICANVMEYCQSLMLQSSPAFQSAVCLFTPSLSETTNRDGPRQDTQVPMVPYWRLPGLGIIVYLLKQSASDFFSYYDSHRRSVNKLQNVEQLPPDEIKELCQSVMPAGVDKISTAQKCVLARRRLVKLINNRAKLLSLCSFIIETCLFILWRHLEYYLLHCTPTDSQDSLFACRSFFKNRRLQDSFSTEPNLDFRSGLALVSQHDIDQLQSDAINAFGESLQKKLLDIEGLYSKVRSRYSFIQALVRRIRGLLRISRS", "length": 2012, "header": "tr|A0A9J7F4N1-1|A0A9J7F4N1_CRIGR Isoform 1 of Nuclear pore complex protein Nup205 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nup205 PE=3 SV=1 CANONICAL=A0A9J7F4N1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZF6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZF6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773309", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773309", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nuclear pore organization", "id": "GO:0006999", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006999", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of nuclear pore", "id": "GO:0017056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017056", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear pore inner ring", "id": "GO:0044611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044611", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1163, "end_pos": 1165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" }, { "start_pos": 811, "end_pos": 813, "annotation": "n_glycosylation_sequon" }, { "start_pos": 854, "end_pos": 856, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1163, "end_pos": 1165 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 537, "end_pos": 539 }, { "start_pos": 811, "end_pos": 813 }, { "start_pos": 854, "end_pos": 856 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZG1-1", "uniprot_ac": "A0A9J7EZG1", "uniprot_id": "A0A9J7EZG1_CRIGR", "mass": { "chemical_mass": 25500.0, "monoisotopic_mass": 25500.0 }, "refseq": { "ac": "XP_007649715", "name": "LOW QUALITY PROTEIN: stearoyl-CoA desaturase 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649715" }, "gene_names": [ { "name": "Scd5", "type": "recommended", "evidence": [ { "id": "A0A9J7EZG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZG1" } ] }, { "name": "Scd5", "type": "synonym", "evidence": [ { "id": "XP_007649715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649715" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: stearoyl-CoA desaturase 5", "type": "synonym", "evidence": [ { "id": "XP_007649715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649715" }, { "id": "A0A9J7EZG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZG1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 2 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614991.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_027245502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245502" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771383", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH1", "locus": {} } ], "crossref": [ { "id": "100771383", "url": "https://www.ncbi.nlm.nih.gov/gene/100771383", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771383", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771383", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZH1", "url": "https://www.orthodb.org/?gene=A0A9J7EZH1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027245502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245502", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SIPVTMLSAAKHTPIPSXGMPYGKGTKEENIRDCFTGDSVGYAGTIKKWTAIALPSLSGTTLNNTSXRESPQWVELQALYIAIHFVFQEKWPCVXLFNDSWAAANGFAGXSGTWKEHDWKIGEKDXWGRSKWIDLSKWMMDVKILVSXVNAHQKVTSAEEEFNNQVDMMTHSVDSQTLXPNHYVSAPWAHEQSSHGGRVGDYTWAXQHGLLLTKADLATAAAECQICQQQRPTLNPRHGITPQGDQLATXWQVGPLLPWKGQHFFXTEVDTYLGYRFTLXFSAQTTIHGLTECLSHLHGVASDQGTHVTARXVXQRAHDHGIHWFXHVPHHPEAASLIERWNGCLKTQLQRQLGGSSLELWGRDTXKAVYPLDQHPLYDTVSPITRIHESWNPGEEIEISPXPRDPVGKILLPVPMTLSSSGLEVLFQKVXITPASTHNKPIGVKAQTSHDHVGLQISLSQQVKKRITVLGPVIDPDYHGETGLLXKKDHDWSAGNPLGHLLNLPCPVIKVNGKLXQPNPGVMTKGTDPSGMKVWVTPPGKEPRLAEVLAEGGGNTEWVAEEGRCKYQLRPRDHLQTRIITDVSISVMFC", "length": 590, "header": "tr|A0A9J7EZH1-1|A0A9J7EZH1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein LOC100771383 OS=Cricetulus griseus OX=10029 GN=LOC100771383 PE=4 SV=1 CANONICAL=A0A9J7EZH1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH1/entry", "sequence": { "sequence": "SIPVTMLSAAKHTPIPSXGMPYGKGTKEENIRDCFTGDSVGYAGTIKKWTAIALPSLSGTTLNNTSXRESPQWVELQALYIAIHFVFQEKWPCVXLFNDSWAAANGFAGXSGTWKEHDWKIGEKDXWGRSKWIDLSKWMMDVKILVSXVNAHQKVTSAEEEFNNQVDMMTHSVDSQTLXPNHYVSAPWAHEQSSHGGRVGDYTWAXQHGLLLTKADLATAAAECQICQQQRPTLNPRHGITPQGDQLATXWQVGPLLPWKGQHFFXTEVDTYLGYRFTLXFSAQTTIHGLTECLSHLHGVASDQGTHVTARXVXQRAHDHGIHWFXHVPHHPEAASLIERWNGCLKTQLQRQLGGSSLELWGRDTXKAVYPLDQHPLYDTVSPITRIHESWNPGEEIEISPXPRDPVGKILLPVPMTLSSSGLEVLFQKVXITPASTHNKPIGVKAQTSHDHVGLQISLSQQVKKRITVLGPVIDPDYHGETGLLXKKDHDWSAGNPLGHLLNLPCPVIKVNGKLXQPNPGVMTKGTDPSGMKVWVTPPGKEPRLAEVLAEGGGNTEWVAEEGRCKYQLRPRDHLQTRIITDVSISVMFC", "length": 590, "header": "tr|A0A9J7EZH1-1|A0A9J7EZH1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein LOC100771383 OS=Cricetulus griseus OX=10029 GN=LOC100771383 PE=4 SV=1 CANONICAL=A0A9J7EZH1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614735.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509639", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509639" } ] }, { "annotation": "Transcription termination factor. Binds to a 28 bp region within the tRNA(Leu(uur)) gene at a position immediately adjacent to and downstream of the 16S rRNA gene; this region comprises a tridecamer sequence critical for directing accurate termination. Binds DNA along the major grove and promotes DNA bending and partial unwinding. Promotes base flipping. Transcription termination activity appears to be polarized with highest specificity for transcripts initiated on the light strand.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN0#function" }, { "database": "UniProtKB", "id": "ARBA00037520", "url": "https://www.uniprot.org/uniprotkb/ARBA00037520#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mterf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN0", "locus": {} } ], "crossref": [ { "id": "100766534", "url": "https://www.ncbi.nlm.nih.gov/gene/100766534", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766534", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766534", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IVSRYPR", "url": "https://omabrowser.org/oma/group/IVSRYPR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EZN0", "url": "https://www.orthodb.org/?gene=A0A9J7EZN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15437:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15437:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509639", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509639", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRNGWCMGRNFLFGSRGWMIEYSAEIFLKSISLRPFSVKCYSHREPLENEDLLSNLLTMGVDVDMARRRQPGVFNRMATNEQELKVFLLSKGASDKMIGNIISRYPRAITRNSEGLSKRWDLWRKIMASDIEIINILERSPESFFRSNNNLNLENNIEFLCSVGLTNESLCRLLTSAPRTFSNSLNLNKQMVEFLQETSMALGHNDPRAFVRNILSKNPSILIQSTKRVKANIDFLQSTFNLNKEDLLLLICGPGARILDLSNDCTKRNYTNIREKLLSLGCTDEEVQKFVLSYLNVIFLSEKKFNGKIDCLLEEKVSISQIIESPRVLDVSINTLKTRMKELVYAGYDLSSSNIALLSWSQKRYEAKLKRLNEQC", "length": 378, "header": "tr|A0A9J7EZN0-1|A0A9J7EZN0_CRIGR Isoform 1 of Transcription termination factor 1, mitochondrial OS=Cricetulus griseus OX=10029 GN=Mterf1 PE=3 SV=1 CANONICAL=A0A9J7EZN0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN0/entry", "sequence": { "sequence": "MASRNGWCMGRNFLFGSRGWMIEYSAEIFLKSISLRPFSVKCYSHREPLENEDLLSNLLTMGVDVDMARRRQPGVFNRMATNEQELKVFLLSKGASDKMIGNIISRYPRAITRNSEGLSKRWDLWRKIMASDIEIINILERSPESFFRSNNNLNLENNIEFLCSVGLTNESLCRLLTSAPRTFSNSLNLNKQMVEFLQETSMALGHNDPRAFVRNILSKNPSILIQSTKRVKANIDFLQSTFNLNKEDLLLLICGPGARILDLSNDCTKRNYTNIREKLLSLGCTDEEVQKFVLSYLNVIFLSEKKFNGKIDCLLEEKVSISQIIESPRVLDVSINTLKTRMKELVYAGYDLSSSNIALLSWSQKRYEAKLKRLNEQC", "length": 378, "header": "tr|A0A9J7EZN0-1|A0A9J7EZN0_CRIGR Isoform 1 of Transcription termination factor 1, mitochondrial OS=Cricetulus griseus OX=10029 GN=Mterf1 PE=3 SV=1 CANONICAL=A0A9J7EZN0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246621", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246621" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Shisa3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN6", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZN6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756690", "url": "https://www.ncbi.nlm.nih.gov/gene/100756690", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756690", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756690", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZN6", "url": "https://www.orthodb.org/?gene=A0A9J7EZN6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31395", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31395", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31395:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31395:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13908", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13908", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246621", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246621", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGALLTLCFLVSLLRWGPASAQQPGEYCHGWVDAQGNYHEGFQCPEDFDTQDATICCGSCALRYCCAAADARLEQGGCTNDRGELEHPGITAQPVYVPFLIVGSIFIAFIILGSLVAIYCCTCLRPKEPSQQPIRFSLRSYQTETLPMILTSTSLRAPSRQSSTATSSSSTGGSVRRFSFARAEPGCLVPSSPPPYTTGHAIHLTQPSGFLVSPQYFAYPLQQEPPLPGKSCPDFSSS", "length": 238, "header": "tr|A0A9J7EZN6-1|A0A9J7EZN6_CRIGR Isoform 1 of Protein shisa-3 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Shisa3 PE=4 SV=1 CANONICAL=A0A9J7EZN6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZN6/entry", "sequence": { "sequence": "MGALLTLCFLVSLLRWGPASAQQPGEYCHGWVDAQGNYHEGFQCPEDFDTQDATICCGSCALRYCCAAADARLEQGGCTNDRGELEHPGITAQPVYVPFLIVGSIFIAFIILGSLVAIYCCTCLRPKEPSQQPIRFSLRSYQTETLPMILTSTSLRAPSRQSSTATSSSSTGGSVRRFSFARAEPGCLVPSSPPPYTTGHAIHLTQPSGFLVSPQYFAYPLQQEPPLPGKSCPDFSSS", "length": 238, "header": "tr|A0A9J7EZN6-1|A0A9J7EZN6_CRIGR Isoform 1 of Protein shisa-3 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Shisa3 PE=4 SV=1 CANONICAL=A0A9J7EZN6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZP1-1", "uniprot_ac": "A0A9J7EZP1", "uniprot_id": "A0A9J7EZP1_CRIGR", 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"https://www.ncbi.nlm.nih.gov/protein/XP_027247415" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247415", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247415" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZP1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832873", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZP1", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZP1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113832873", "url": "https://www.ncbi.nlm.nih.gov/gene/113832873", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832873", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832873", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZP1", "url": "https://www.orthodb.org/?gene=A0A9J7EZP1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": 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"MRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDESSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLE", "length": 457, "header": "tr|A0A9J7EZP1-1|A0A9J7EZP1_CRIGR Isoform 1 of Uncharacterized protein LOC113832873 OS=Cricetulus griseus OX=10029 GN=LOC113832873 PE=4 SV=1 CANONICAL=A0A9J7EZP1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZP1/entry", "sequence": { "sequence": "MRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDESSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLE", "length": 457, "header": "tr|A0A9J7EZP1-1|A0A9J7EZP1_CRIGR Isoform 1 of Uncharacterized protein LOC113832873 OS=Cricetulus griseus OX=10029 GN=LOC113832873 PE=4 SV=1 CANONICAL=A0A9J7EZP1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027243859.1. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247553", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247553" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mlf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV4", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZV4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZV4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758216", "url": "https://www.ncbi.nlm.nih.gov/gene/100758216", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019376", 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"categories": [ "Protein" ] }, { "id": "A0A9J7EZV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F410", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F410", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F410-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F410-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H940", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H940", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H940-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H940-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6V9", 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isoform X3 OS=Cricetulus griseus OX=10029 GN=Mlf1 PE=3 SV=1 CANONICAL=A0A9J7EZV4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H940-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H940/entry", "sequence": { "sequence": "MFRMLGSSFEDDPFFADSFLAHRENMRHMMRSFSEPFGRDTLSICDGRRRTHNHRGHNDEDSLTHTDVSPFQAMDRMMFNMQNGMQELQRNFLSMDPNGHSFCSSSVMTYSKVGDEPPKVFQASTQTRMAPGGIKETRRAVRDSDSGLEKMAVGHHIHDRAHVIKKSKNNRTGDEEVNQEFINMNECDAHSFDNEWKSEVLKFKPSGRPCNLENTRIRSVGHDNSGPRELKRREKIHRSSALENGRRQNVFVDKLNVKGSPGKITKK", "length": 267, "header": "tr|A0A9J7H940-1|A0A9J7H940_CRIGR Computationally mapped isoform of Myeloid leukemia factor 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Mlf1 PE=3 SV=1 CANONICAL=A0A9J7EZV4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HD88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD88/entry", "sequence": { "sequence": "MRHMMRSFSEPFGRDTLSICDGRRRTHNHRGHNDEDSLTHTDVSPFQAMDRMMFNMQNGMQELQRNFGQLSMDPNGHSFCSSSVMTYSKVGDEPPKVFQASTQTRMAPGGVGVKRLKPFSINDKIKETRRAVRDSDSGLEKMAVGHHIHDRAHVIKKSKNNRTGDEEVNQEFINMNECDAHSFDNEWKSEVLKFKPSGRPCNLENTRIRSVGHDNSGPRELKRREKIHRSSALENGRRQNVFVDKLNVKGSPGKITKK", "length": 258, "header": "tr|A0A9J7HD88-1|A0A9J7HD88_CRIGR Computationally mapped isoform of Myeloid leukemia factor 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Mlf1 PE=3 SV=1 CANONICAL=A0A9J7EZV4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6V9/entry", "sequence": { "sequence": "MFRMLGSSFEDDPFFADSFLAHRENMRHMMRSFSEPFGRDTLSICDGRRRTHNHRGHNDEDSLTHTDVSPFQAMDRMMFNMQNGMQELQRNFLSMDPNGHSFCSSSVMTYSKVGDEPPKVFQASTQTRMAPGGVGVKRLKPFSINDKIKETRRAVRDSDSGLEKMAVGHHIHDRAHVIKKSKNNRTGDEEVNQEFINMNECDAHSFDNEWKSEVLKFKPSGRPCNLENTRIRSVGHDNSGPRELKRREKIHRSSALENGRRQNVFVDKLNVKGSPGKITKK", "length": 281, "header": "tr|A0A9J7J6V9-1|A0A9J7J6V9_CRIGR Computationally mapped isoform of Myeloid leukemia 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"gene_names": [ { "name": "LOC100766106", "type": "recommended", "evidence": [ { "id": "A0A9J7EZV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV7" } ] }, { "name": "LOC100766106", "type": "synonym", "evidence": [ { "id": "XP_027243537", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243537" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: vacuole membrane protein 1", "type": "synonym", "evidence": [ { "id": "XP_027243537", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243537" }, { "id": "A0A9J7EZV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 9 indels internal stop codons :: corrected 5 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243537", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243537" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766106", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV7", "locus": {} } ], "crossref": [ { "id": "100766106", "url": "https://www.ncbi.nlm.nih.gov/gene/100766106", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100766106", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766106", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZV7", "url": "https://www.orthodb.org/?gene=A0A9J7EZV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027243537", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243537", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAENGKNCDQRCVAMSKEXSRSFIGFSSVHEKKRRAKEXKNIVLWTQPLXTLXCFPLETLIVLKEWTSKLWHRQSIVVSFXLLLAVLIAVXGVEGVHQQCVQCIEKQFLSYASCCPVGFGTGLHTFLLYLLSYSFDVGVGTAVGELCLPLHFMASTTRLSGAEPDDEKYQEFEEMLGHVKSSQDSASWIVXKLVXKVVFFFFFILACASIPKPVFDQPRITCGHFLVPFWTLVGATLIGKAIIKIHIQKVFVTLTSRKHIMEQMVAFTGAVPXIGLSLQKPFQSYLEAPWQKLHHKTPQRKLTIRMFEKLLAVMVCYLSLAVINSMGQSNTKIINLQNLNSEKKTK", "length": 346, "header": "tr|A0A9J7EZV7-1|A0A9J7EZV7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: vacuole membrane protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100766106 PE=4 SV=1 CANONICAL=A0A9J7EZV7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZV7/entry", "sequence": { "sequence": "MAENGKNCDQRCVAMSKEXSRSFIGFSSVHEKKRRAKEXKNIVLWTQPLXTLXCFPLETLIVLKEWTSKLWHRQSIVVSFXLLLAVLIAVXGVEGVHQQCVQCIEKQFLSYASCCPVGFGTGLHTFLLYLLSYSFDVGVGTAVGELCLPLHFMASTTRLSGAEPDDEKYQEFEEMLGHVKSSQDSASWIVXKLVXKVVFFFFFILACASIPKPVFDQPRITCGHFLVPFWTLVGATLIGKAIIKIHIQKVFVTLTSRKHIMEQMVAFTGAVPXIGLSLQKPFQSYLEAPWQKLHHKTPQRKLTIRMFEKLLAVMVCYLSLAVINSMGQSNTKIINLQNLNSEKKTK", "length": 346, "header": "tr|A0A9J7EZV7-1|A0A9J7EZV7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: vacuole membrane protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100766106 PE=4 SV=1 CANONICAL=A0A9J7EZV7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZW2-1", "uniprot_ac": "A0A9J7EZW2", "uniprot_id": "A0A9J7EZW2_CRIGR", "mass": { "chemical_mass": 134639.0, "monoisotopic_mass": 134639.0 }, "refseq": { "ac": "XP_027243846", "name": "EH domain-binding protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243846" }, "gene_names": [ { "name": "Ehbp1", "type": "recommended", "evidence": [ { "id": "A0A9J7EZW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" } ] }, { "name": "Ehbp1", "type": "synonym", "evidence": [ { "id": "XP_027243846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243846" } ] } ], "protein_names": [ { "name": "EH domain-binding protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027243846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243846" }, { "id": "A0A9J7EZW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243846" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ehbp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2", "locus": {} } ], "crossref": [ { "id": "cd21254", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21254", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765232", "url": "https://www.ncbi.nlm.nih.gov/gene/100765232", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765232", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765232", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZW2", "url": "https://www.orthodb.org/?gene=A0A9J7EZW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243846", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCB1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFC0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J260", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J260", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J260-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J260-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6B8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6B8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEEPVTETTSPKKPEESFYNNSYNPFKGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDTPEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1190, "header": "tr|A0A9J7EZW2-1|A0A9J7EZW2_CRIGR Isoform 1 of EH domain-binding protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEEPVTETTSPKKPEESFYNNSYNPFKGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDTPEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1190, "header": "tr|A0A9J7EZW2-1|A0A9J7EZW2_CRIGR Isoform 1 of EH domain-binding protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX3/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEEPVTETTSPKKPEESFYNNSYNPFKGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDTPEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1187, "header": "tr|A0A9J7HBX3-1|A0A9J7HBX3_CRIGR Computationally mapped isoform of EH domain-binding protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCB1/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEEPVTETTSPKKPEESFYNNSYNPFKGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDTPEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1189, "header": "tr|A0A9J7HCB1-1|A0A9J7HCB1_CRIGR Computationally mapped isoform of EH domain-binding protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HFC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFC0/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDTPEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1165, "header": "tr|A0A9J7HFC0-1|A0A9J7HFC0_CRIGR Computationally mapped isoform of EH domain-binding protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HFH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFH7/entry", "sequence": { "sequence": "MMGYNLQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEEPVTETTSPKKPEESFYNNSYNPFKGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDTPEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1161, "header": "tr|A0A9J7HFH7-1|A0A9J7HFH7_CRIGR Computationally mapped isoform of EH domain-binding protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J260-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J260/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEEPVTETTSPKKPEESFYNNSYNPFKGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1154, "header": "tr|A0A9J7J260-1|A0A9J7J260_CRIGR Computationally mapped isoform of EH domain-binding protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6B8/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEEPVTETTSPKKPEESFYNNSYNPFKGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1153, "header": "tr|A0A9J7J6B8-1|A0A9J7J6B8_CRIGR Computationally mapped isoform of EH domain-binding protein 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFS9/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITELINTLNFLDDAQKDLATVNTNPFDEPDITELNPFGDPDSEGVQTPQHLNPFDEPETCVMIKDSPPHSTKRKTLRPVDMSKYLYADSSKSEDEFDESNPFYEPKPTSPNNLVNIVQEGETERRVKRKAPAPPTLTPKTGVNENTAVSTGRDLSASPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPQRPASGAVDFLPQDDSVFVTDSGVGESGSERQTPDDHLSPSTASPSCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDAAQSLVLSGQNRLQKAENSELSDLHVSGKKKDVSPPSICEQKLQTVNTSNDLEQEKLENSGPLEYRLDGESAIKKPSLSPPSKLGYSYSRDTDFTKKICASLRQTESDPDSDKNTLNHADPSTKTVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKLTGSTAPPLCSRQLSDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDTPEQNSKLVDLKLKKLLEAQPQVANSLSSDAQKAATDTSEQGVKNGVEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGNKEKAAITETQRKPSEDEKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1162, "header": "tr|A0A9J7KFS9-1|A0A9J7KFS9_CRIGR Computationally mapped isoform of EH domain-binding protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ehbp1 PE=4 SV=1 CANONICAL=A0A9J7EZW2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765232", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765232", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 523, "end_pos": 525, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" }, { "start_pos": 686, "end_pos": 688, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EZW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" }, { "id": "PS51848", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51848" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BMERB", "eco_id": "ECO_0000259", "start_pos": 1015, "end_pos": 1171, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7EZW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" }, { "id": "PS51840", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 NT-type", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 158, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7EZW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW2" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 406, "end_pos": 511, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 523, "end_pos": 525 }, { "start_pos": 539, "end_pos": 541 }, { "start_pos": 686, "end_pos": 688 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7EZY8-1", "uniprot_ac": "A0A9J7EZY8", "uniprot_id": "A0A9J7EZY8_CRIGR", "mass": { "chemical_mass": 27286.0, "monoisotopic_mass": 27286.0 }, "refseq": { "ac": "XP_003502088", "name": "granzyme C", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502088" }, "gene_names": [ { "name": "LOC100754015", "type": "recommended", "evidence": [ { "id": "A0A9J7EZY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8" } ] }, { "name": "LOC100754015", "type": "synonym", "evidence": [ { "id": "XP_003502088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502088" } ] } ], "protein_names": [ { "name": "Granzyme C", "type": "synonym", "evidence": [ { "id": "A0A9J7EZY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8/entry#names_and_taxonomy" } ] }, { "name": "granzyme C", "type": "synonym", "evidence": [ { "id": "XP_003502088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502088" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613875.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502088" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754015", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8", "locus": {} } ], "crossref": [ { "id": "A0A9J7EZY8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7EZY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754015", "url": "https://www.ncbi.nlm.nih.gov/gene/100754015", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754015", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754015", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZY8", "url": "https://www.orthodb.org/?gene=A0A9J7EZY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502088", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPILILLTFLLPLGAGAEEIIGGHEVKPHSRPYMAFILSVRDDGNKSFCGGFLVRDNFVLTAAHCRGSSMKVTLGAHNIRAQEKTQQIIPVAEAIQHPDYNSKSRSSDIMLLKLQTKAKRTKAVKTLKLPWRKVHVKPGDVCSVAGWGMIAPEGKCANTLQEVELTVQKDQECEARYPGYYNKAIQICVGDPQIKRAAFRGDSGGPLLCKKVTVGITSFGKKDSSTPEVFTRISSFLSWIKNTMEHS", "length": 248, "header": "tr|A0A9J7EZY8-1|A0A9J7EZY8_CRIGR Isoform 1 of Granzyme C OS=Cricetulus griseus OX=10029 GN=LOC100754015 PE=4 SV=1 CANONICAL=A0A9J7EZY8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8/entry", "sequence": { "sequence": "MSPILILLTFLLPLGAGAEEIIGGHEVKPHSRPYMAFILSVRDDGNKSFCGGFLVRDNFVLTAAHCRGSSMKVTLGAHNIRAQEKTQQIIPVAEAIQHPDYNSKSRSSDIMLLKLQTKAKRTKAVKTLKLPWRKVHVKPGDVCSVAGWGMIAPEGKCANTLQEVELTVQKDQECEARYPGYYNKAIQICVGDPQIKRAAFRGDSGGPLLCKKVTVGITSFGKKDSSTPEVFTRISSFLSWIKNTMEHS", "length": 248, "header": "tr|A0A9J7EZY8-1|A0A9J7EZY8_CRIGR Isoform 1 of Granzyme C OS=Cricetulus griseus OX=10029 GN=LOC100754015 PE=4 SV=1 CANONICAL=A0A9J7EZY8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7EZY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY8" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 246, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 46, "end_pos": 48 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F000-1", "uniprot_ac": "A0A9J7F000", "uniprot_id": "A0A9J7F000_CRIGR", "mass": { "chemical_mass": 56340.0, "monoisotopic_mass": 56340.0 }, "refseq": { "ac": "XP_027243121", "name": "TBC1 domain family member 10A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243121" }, "gene_names": [ 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8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243121", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243121" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F000" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tbc1d10a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F000", "locus": {} } ], "crossref": [ { "id": "A0A9J7F000", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F000", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758877", "url": "https://www.ncbi.nlm.nih.gov/gene/100758877", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758877", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758877", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F000", "url": "https://www.orthodb.org/?gene=A0A9J7F000", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243121", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243121", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F000-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F000-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKSSKENGPRAPAAGGSLSGTRESLAQGPDAATTDELSSLGSDSEANGFAERRIDKFGFIVGSQGAEGALEEVPLEVLRQRESKWLDMLNNWDKWMAKKHKKIRLRCQKGIPPSLRGRAWQYLSGGKVKLQQNPGKFDELDMSPGDPKWLDVIERDLHRQFPFHEMFVSRGGHGQQDLFRVLKAYTLYRPEEGYCQAQAPIAAVLLMHMPAEQAFWCLVQVCEKYLPGYYSEKLEAIQLDGEILFSLLQKVSPVAHKHLSRQKIDPLLYMTEWFMCAFARTLPWSSVLRVWDMFFCEGVKIIFRVGLVLLKHALGSPEKLKACQGQYETIEQLRSLSPKIMQEAFLVQEVIELPVTERQIEREHLIQLRRWQETRGELECRSPPRMHGAKAILDAEPGPRPTLQPSPSIRLPSDATLLTSKAKPPKQVQKEQRRTKDSGQLDKSPGPNQAAVMTASGDACPPQDVSPKDSVPQDSAPQDLAYHRSQESLNSQESEDTYL", "length": 500, "header": "tr|A0A9J7F000-1|A0A9J7F000_CRIGR Isoform 1 of TBC1 domain family member 10A isoform X2 OS=Cricetulus griseus OX=10029 GN=Tbc1d10a PE=4 SV=1 CANONICAL=A0A9J7F000-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F000-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F000/entry", "sequence": { "sequence": "MAKSSKENGPRAPAAGGSLSGTRESLAQGPDAATTDELSSLGSDSEANGFAERRIDKFGFIVGSQGAEGALEEVPLEVLRQRESKWLDMLNNWDKWMAKKHKKIRLRCQKGIPPSLRGRAWQYLSGGKVKLQQNPGKFDELDMSPGDPKWLDVIERDLHRQFPFHEMFVSRGGHGQQDLFRVLKAYTLYRPEEGYCQAQAPIAAVLLMHMPAEQAFWCLVQVCEKYLPGYYSEKLEAIQLDGEILFSLLQKVSPVAHKHLSRQKIDPLLYMTEWFMCAFARTLPWSSVLRVWDMFFCEGVKIIFRVGLVLLKHALGSPEKLKACQGQYETIEQLRSLSPKIMQEAFLVQEVIELPVTERQIEREHLIQLRRWQETRGELECRSPPRMHGAKAILDAEPGPRPTLQPSPSIRLPSDATLLTSKAKPPKQVQKEQRRTKDSGQLDKSPGPNQAAVMTASGDACPPQDVSPKDSVPQDSAPQDLAYHRSQESLNSQESEDTYL", "length": 500, "header": "tr|A0A9J7F000-1|A0A9J7F000_CRIGR Isoform 1 of TBC1 domain family member 10A isoform X2 OS=Cricetulus griseus OX=10029 GN=Tbc1d10a PE=4 SV=1 CANONICAL=A0A9J7F000-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F000", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F000" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"MATPGSEPQAFTPALSATALHPHLHQHHGGTGGAGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPPELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKTTDPLYLHAMERPHLHQHVEDSKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNVPMSNIMEEEQTIKEDACHHLTPAKGEFQPKPSLLGDTNSSGQERDQFADGVDALHPGFMNYIKDQVGDCEELLRIEEDAHWHMEGLLESSKDQDLDISMIEQLREAEGLLQDPNGLSTDITERSILSLYPMGSAEGLELPDPTFNGQMQLETSPECEVQNDLMIQSNGSQYSPNEMRDSSPSVSPTANITAPFGLKPRSGMGNLLSFGPQHRKVAKGSLFVRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGTTVQALLDVTVTKALFT", "length": 693, "header": "tr|A0A9J7F284-1|A0A9J7F284_CRIGR Isoform 1 of Leucine-rich repeat and calponin homology domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lrch1 PE=4 SV=1 CANONICAL=A0A9J7F284-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F023-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F023/entry", "sequence": { "sequence": "MATPGSEPQAFTPALSATALHPHLHQHHGGTGGAGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPPELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKTTDPLYLHAMERPHLHQHVEDSKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNVPMSNIMEEEQTIKEDACHHLTPAKGEFQPKPSLLGDTNSSGQERDQFADGVDALHPGFMNYIKDQVGDCEELLRIEEDAHWHMEGLLESSKDQDLDISMIEQLREAEGLLQDPNGLSTDITERSILSLYPMGSAEGLELPDPTFNGQMQLETSPECEVQNDLMIQSNGSQYSPNEMRDSSPSVSPTANITAPFGLKPRSVFVRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGTTVQALLDVTVTKALFT", "length": 674, "header": "tr|A0A9J7F023-1|A0A9J7F284_CRIGR Computationally mapped isoform of Leucine-rich repeat and calponin homology domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lrch1 PE=4 SV=1 CANONICAL=A0A9J7F284-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F284-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F284/entry", "sequence": { "sequence": "MATPGSEPQAFTPALSATALHPHLHQHHGGTGGAGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPPELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKTTDPLYLHAMERPHLHQHVEDSKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNVPMSNIMEEEQTIKEDACHHLTPAKGEFQPKPSLLGDTNSSGQERDQFADGVDALHPGFMNYIKDQVGDCEELLRIEEDAHWHMEGLLESSKDQDLDISMIEQLREAEGLLQDPNGLSTDITERSILSLYPMGSAEGLELPDPTFNGQMQLETSPECEVQNDLMIQSNGSQYSPNEMRDSSPSVSPTANITAPFGLKPRSGMGNLLSFGPQHRKVAKGSLFVRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGTTVQALLDVTVTKALFT", "length": 693, "header": "tr|A0A9J7F284-1|A0A9J7F284_CRIGR Isoform 1 of Leucine-rich repeat and calponin homology domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lrch1 PE=4 SV=1 CANONICAL=A0A9J7F284-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3, "start_aa": "Thr", "end_pos": 3, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"n_glycosylation_sequon" }, { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F284", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F284" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 573, "end_pos": 686, "start_aa": "Met", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 3 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 368, "end_pos": 370 }, { "start_pos": 497, "end_pos": 499 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", 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} ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F029-1", "uniprot_ac": "A0A9J7F029", "uniprot_id": "A0A9J7F029_CRIGR", "mass": { "chemical_mass": 7888.0, "monoisotopic_mass": 7888.0 }, "refseq": { "ac": "XP_007649913", "name": "small ubiquitin-related modifier 2-A-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649913" }, "gene_names": [ { "name": "LOC103162643", "type": "recommended", "evidence": [ { "id": "A0A9J7F029", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F029" } ] }, { "name": "LOC103162643", "type": "synonym", "evidence": [ { "id": "XP_007649913", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649913" } ] } ], "protein_names": [ { "name": "Small ubiquitin-related modifier 2-A-like", "type": "synonym", "evidence": [ { "id": "A0A9J7F029", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F029/entry#names_and_taxonomy" } ] }, { "name": "small ubiquitin-related modifier 2-A-like", "type": "synonym", "evidence": [ { "id": "XP_007649913", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649913" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615050.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649913", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649913" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F029" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103162643", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F029", "locus": {} } ], "crossref": [ { "id": "A0A9J7F029", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F029", "database": "AlphaFoldDB", "categories": [] }, { "id": "103162643", "url": "https://www.ncbi.nlm.nih.gov/gene/103162643", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103162643", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103162643", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR10562", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10562", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007649913", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649913", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F029", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F029", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F029-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F029-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALEEPKEGVETENNDHIDLKVVGRWLSLQFKMKRQTALSELMKAYCEQQLEKDEEMIDVFQQQTAD", "length": 67, "header": "tr|A0A9J7F029-1|A0A9J7F029_CRIGR Isoform 1 of Small ubiquitin-related modifier 2-A-like OS=Cricetulus griseus OX=10029 GN=LOC103162643 PE=4 SV=1 CANONICAL=A0A9J7F029-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F029-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F029/entry", "sequence": { "sequence": "MALEEPKEGVETENNDHIDLKVVGRWLSLQFKMKRQTALSELMKAYCEQQLEKDEEMIDVFQQQTAD", "length": 67, "header": "tr|A0A9J7F029-1|A0A9J7F029_CRIGR Isoform 1 of Small ubiquitin-related modifier 2-A-like OS=Cricetulus griseus OX=10029 GN=LOC103162643 PE=4 SV=1 CANONICAL=A0A9J7F029-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Classification" ] }, { "id": "PTHR14304", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14304", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14304:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14304:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14444", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14444", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19256", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19256", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246024", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LRY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LRY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F066-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3G4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3G4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVIGALPAPYSASLSKGASDIVKGVLSCWETWVSQDLERTAFPMSQFKRQRINPLPGGRNFSGSASTSLLGPPPGLLTPPVATDLSQNARHLQGGEKQRVFTGIVTSLHDYFGVVDEEVFFQLSVVKGRLPQLGEKVLVKAAYNPGQAVPWNAVKVQTLSNQPLLKSPAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSHTLHLSHLNRFPARGPHGRLDQSRSDDYDSKKRKQRAGGEPWGAKKPRHDLPPYRVHLTPYSVDSPVCDFLELQRRYRSLLVPSDFLSVHLSWLSAFPLSQPFSLHHPSRIQVSSEKEAAPDTGAEPSPVDSDPTYSSKVLLLSSPGLEEFYRCCMMFVDDMAEPRETPEHPLKQLKFLLGRKEEEAVLVGGEWSPSLDGLDPQADPQVLVRTAIRCAQAQTGIDLSTCTKWWRFAEFQYLQPGPPRRLHTVVVYLPDVWTIMPTLEEWEALCQQKATEAATQSQEALGEAEPTEQAPDASEQADTSKQNTETSEATTQQDVDTDVPEAPPPPLEPAVMARPGCVNLSLHGILEDRRPKERISFEVVVLAELFLEMLQRDFGYRIYKMLLSLPEKVVSPPEPEKEEATKEDVVKEEVAKVSKDEVQNEGTAAESDNPLKEDGLLPKRPSSGGEEEEKPRGEAAEDLCEMALDPDLLLLRDDGEEEFAGAKLEETEVRSVASNQSEMEYSSLQDMPKELDPSAVLPLDCLLAFVFFDANWCGYLHRRDLERALLTLGIRLSAEQAKQLVSRVVTQNICQYRSLQYSRTEVLDDGLPEEVLFGNLDLLPPSGKNTKPGAVPIEHKGLVPHNGSLINVGSLLQRAEQQDSGRLYLENKIHTLELKLEESHNRFSATEVTNKTLAAEMQELRTRLVEAEETARTAERHKNQLQRQLQDFRRRLTPLHLEMQRMVEKADSWVEKEEPAPSN", "length": 960, "header": "tr|A0A9J7F066-1|A0A9J7F066_CRIGR Isoform 1 of Cell cycle and apoptosis regulator protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccar2 PE=4 SV=1 CANONICAL=A0A9J7F066-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LRY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRY0/entry", "sequence": { "sequence": "MSQFKRQRINPLPGGRNFSGSASTSLLGPPPGLLTPPVATDLSQNARHLQGGEKQRVFTGIVTSLHDYFGVVDEEVFFQLSVVKGRLPQLGEKVLVKAAYNPGQAVPWNAVKVQTLSNQPLLKSPAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSHTLHLSHLNRFPARGPHGRLDQSRSDDYDSKKRKQRAGGEPWGAKKPRHDLPPYRVHLTPYSVDSPVCDFLELQRRYRSLLVPSDFLSVHLSWLSAFPLSQPFSLHHPSRIQVSSEKEAAPDTGAEPSPVDSDPTYSSKVLLLSSPGLEEFYRCCMMFVDDMAEPRETPEHPLKQLKFLLGRKEEEAVLVGGEWSPSLDGLDPQADPQVLVRTAIRCAQAQTGIDLSTCTKWWRFAEFQYLQPGPPRRLHTVVVYLPDVWTIMPTLEEWEALCQQKATEAATQSQEALGEAEPTEQAPDASEQADTSKQNTETSEATTQQDVDTDVPEAPPPPLEPAVMARPGCVNLSLHGILEDRRPKERISFEVVVLAELFLEMLQRDFGYRIYKMLLSLPEKVVSPPEPEKEEATKEDVVKEEVAKVSKDEVQNEGTAAESDNPLKEDGLLPKRPSSGGEEEEKPRGEAAEDLCEMALDPDLLLLRDDGEEEFAGAKLEETEVRSVASNQSEMEYSSLQDMPKELDPSAVLPLDCLLAFVFFDANWCGYLHRRDLERALLTLGIRLSAEQAKQLVSRVVTQNICQYRSLQYSRTEVLDDGLPEEVLFGNLDLLPPSGKNTKPGAVPIEHKGLVPHNGSLINVGSLLQRAEQQDSGRLYLENKIHTLELKLEESHNRFSATEVTNKTLAAEMQELRTRLVEAEETARTAERHKNQLQRQLQDFRRRLTPLHLEMQRMVEKADSWVEKEEPAPSN", "length": 916, "header": "tr|A0A8C2LRY0-1|A0A8C2LRY0_CRIGR Computationally mapped isoform of Cell cycle and apoptosis regulator protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccar2 PE=4 SV=1 CANONICAL=A0A9J7F066-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F066-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066/entry", "sequence": { "sequence": "MNVIGALPAPYSASLSKGASDIVKGVLSCWETWVSQDLERTAFPMSQFKRQRINPLPGGRNFSGSASTSLLGPPPGLLTPPVATDLSQNARHLQGGEKQRVFTGIVTSLHDYFGVVDEEVFFQLSVVKGRLPQLGEKVLVKAAYNPGQAVPWNAVKVQTLSNQPLLKSPAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSHTLHLSHLNRFPARGPHGRLDQSRSDDYDSKKRKQRAGGEPWGAKKPRHDLPPYRVHLTPYSVDSPVCDFLELQRRYRSLLVPSDFLSVHLSWLSAFPLSQPFSLHHPSRIQVSSEKEAAPDTGAEPSPVDSDPTYSSKVLLLSSPGLEEFYRCCMMFVDDMAEPRETPEHPLKQLKFLLGRKEEEAVLVGGEWSPSLDGLDPQADPQVLVRTAIRCAQAQTGIDLSTCTKWWRFAEFQYLQPGPPRRLHTVVVYLPDVWTIMPTLEEWEALCQQKATEAATQSQEALGEAEPTEQAPDASEQADTSKQNTETSEATTQQDVDTDVPEAPPPPLEPAVMARPGCVNLSLHGILEDRRPKERISFEVVVLAELFLEMLQRDFGYRIYKMLLSLPEKVVSPPEPEKEEATKEDVVKEEVAKVSKDEVQNEGTAAESDNPLKEDGLLPKRPSSGGEEEEKPRGEAAEDLCEMALDPDLLLLRDDGEEEFAGAKLEETEVRSVASNQSEMEYSSLQDMPKELDPSAVLPLDCLLAFVFFDANWCGYLHRRDLERALLTLGIRLSAEQAKQLVSRVVTQNICQYRSLQYSRTEVLDDGLPEEVLFGNLDLLPPSGKNTKPGAVPIEHKGLVPHNGSLINVGSLLQRAEQQDSGRLYLENKIHTLELKLEESHNRFSATEVTNKTLAAEMQELRTRLVEAEETARTAERHKNQLQRQLQDFRRRLTPLHLEMQRMVEKADSWVEKEEPAPSN", "length": 960, "header": "tr|A0A9J7F066-1|A0A9J7F066_CRIGR Isoform 1 of Cell cycle and apoptosis regulator protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccar2 PE=4 SV=1 CANONICAL=A0A9J7F066-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3G4/entry", "sequence": { "sequence": "MNVIGALPAPYSASLSKGASDIVKGVLSCWETWVSQDLERTAFPMSQFKRQRINPLPGGRNFSGSASTSLLGPPPGLLTPPVATDLSQNARHLQGGEKQRVFTGIVTSLHDYFGVVDEEVFFQLSVVKGRLPQLGEKVLVKAAYNPGQAVPWNAVKVQTLSNQPLLKSPAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSHTLHLSHLNRFPARGPHGRLDQSRSDDYDSKKRKQRAGGEPWGAKKPRHDLPPYRVHLTPYSVDSPVCDFLELQRRYRSLLVPSDFLSVHLSWLSAFPLSQPFSLHHPSRIQVSSEKEAAPDTGAEPSPVDSDPTYSSKVLLLSSPGLEEFYRCCMMFVDDMAEPRETPEHPLKQLKFLLGRKEEEAVLVGGEWSPSLDGLDPQADPQVLVRTAIRCAQAQTGIDLSTCTKWWRFAEFQYLQPGPPRRLHTVVVYLPDVWTIMPTLEEWEALCQQKATEAATQSQEALGEAEPTEQAPDASEQADTSKQNTETSEATTQQDVDTDVPEAPPPPLEPAVMARPGCVNLSLHGILEDRRPKERISFEVVVLAELFLEMLQRDFGYRIYKMLLSLPEKVVSPPEPEKEEATKEDVVKEEVAKVSKDEVQNEGTAAESDNPLKEDGLLPKRPSSGGEEEEKPRGEAAEDLCEMALDPDLLLLRDDGEEEFGAKLEETEVRSVASNQSEMEYSSLQDMPKELDPSAVLPLDCLLAFVFFDANWCGYLHRRDLERALLTLGIRLSAEQAKQLVSRVVTQNICQYRSLQYSRTEVLDDGLPEEVLFGNLDLLPPSGKNTKPGAVPIEHKGLVPHNGSLINVGSLLQRAEQQDSGRLYLENKIHTLELKLEESHNRFSATEVTNKTLAAEMQELRTRLVEAEETARTAERHKNQLQRQLQDFRRRLTPLHLEMQRMVEKADSWVEKEEPAPSN", "length": 959, "header": "tr|A0A9J7F3G4-1|A0A9J7F3G4_CRIGR Computationally mapped isoform of Cell cycle and apoptosis regulator protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccar2 PE=4 SV=1 CANONICAL=A0A9J7F066-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769631", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769631", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "DBIRD complex", "id": "GO:0044609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044609", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 15, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage", "id": "GO:1902230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902230", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "response to UV", "id": "GO:0009411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009411", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "regulation of circadian rhythm", "id": "GO:0042752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042752", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "positive regulation of canonical Wnt signaling pathway", "id": "GO:0090263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090263", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "regulation of RNA splicing", "id": "GO:0043484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043484", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "negative regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032435", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "mitochondrial fragmentation involved in apoptotic process", "id": "GO:0043653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043653", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F066", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F066" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription elongation", "id": "GO:0032784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032784", "evidence": [ { "database": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF28341", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247146", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247146", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F0B4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H769", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H769", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H769-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H769-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H806", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H806", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H806-1", "url": 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"MEAGGAGRRGSAGWSCPGPGPTVTTLGSYELSEGCERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEAEEEQVQKGSSLASLSMSKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEIEQELHLAQEEIQNLRQAAADSASEHESDIASLQEDLCRLQGELDDMERIRGDYEMEIASLRAEMDLKTSEPSEISVSDFSGVQEELQQLRERYHFLNEEYQALQESNSSLTGQLAELESDRTRRATELWLESQMLKSKMSVESQTSELDFPEPNPEMQLLRQQLLGTEEQMQGMKTKCKDLCSELEELQHHRRVSEEEQKRLQRELKCAQNEMLRFQNCHSVTQNEELKNKLCALQLKYEASQDEQNELLKVQLQLQSELRQLKVTRATPIESQNEKELMCRLQKLQALHQCSEHEKERLLETQHHLQDKLRCHETELQRLRGIVDCLQEKNDKNAGLQAQLQEMKGLYQCSHDELERQKHMYDQLEQDFQLCQQELTDLKASQSACEDNGKVSSKCDALMSRLTELHDKFKGCQQEMGHLQMEQCELLEDQRRLQEEQGQLQEELHRLTFPQPKCGLLQKSKELLSKLQDLCEMQLLYQSMQDQQRKLIKNQENLLKEQLEAHKELREFTDSGFHDVVANPQDTKGPKSSLCENKSKVLMDQLQALQVLYDTSQRQQELLQQEHGRLMEERKRLQAELQLCMEEIQLLQSQSPTIKMSLESYRKTPGSMAPSNESFNRSYDSTIEDNECFQKSYVSSQASNDSFLKSYESSASCNEAYQKSYRSSNTSVAYKKSYGSTASSETFHKSYVSVADEDPAEPGDLENFEETVAKVLTKLQAVKALYQVSQEDHCQVQEQMNRLLVKQRELSHELEDCEKELKECLEKPAASQSDKNEIKELQTKLRELQLQYQASMDEQGRLLAVQEQLECQLQCCQEELRQLRENRPSISSEARGKNVNKNVNKNVNEVRSKKTSKACSESSESDFGNEKSLEVVLYYKASQRKLDEIAQEEKEMEEAKGNKKQDKKKSCELATEPAAEPKPEPEPKPAEEEDGVYEEYRQGQDKEASEDEEVESSETAEEGNPLTISESRKNMFGMWKPIVFLAIAAVALYVLPNMRPQETEYCYMK", "length": 1193, "header": "tr|A0A9J7F0B4-1|A0A9J7F0B4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 136 isoform X10 OS=Cricetulus griseus OX=10029 GN=Ccdc136 PE=4 SV=1 CANONICAL=A0A9J7F0B4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F0B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4/entry", "sequence": { "sequence": "MEAGGAGRRGSAGWSCPGPGPTVTTLGSYELSEGCERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEAEEEQVQKGSSLASLSMSKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEIEQELHLAQEEIQNLRQAAADSASEHESDIASLQEDLCRLQGELDDMERIRGDYEMEIASLRAEMDLKTSEPSEISVSDFSGVQEELQQLRERYHFLNEEYQALQESNSSLTGQLAELESDRTRRATELWLESQMLKSKMSVESQTSELDFPEPNPEMQLLRQQLLGTEEQMQGMKTKCKDLCSELEELQHHRRVSEEEQKRLQRELKCAQNEMLRFQNCHSVTQNEELKNKLCALQLKYEASQDEQNELLKVQLQLQSELRQLKVTRATPIESQNEKELMCRLQKLQALHQCSEHEKERLLETQHHLQDKLRCHETELQRLRGIVDCLQEKNDKNAGLQAQLQEMKGLYQCSHDELERQKHMYDQLEQDFQLCQQELTDLKASQSACEDNGKVSSKCDALMSRLTELHDKFKGCQQEMGHLQMEQCELLEDQRRLQEEQGQLQEELHRLTFPQPKCGLLQKSKELLSKLQDLCEMQLLYQSMQDQQRKLIKNQENLLKEQLEAHKELREFTDSGFHDVVANPQDTKGPKSSLCENKSKVLMDQLQALQVLYDTSQRQQELLQQEHGRLMEERKRLQAELQLCMEEIQLLQSQSPTIKMSLESYRKTPGSMAPSNESFNRSYDSTIEDNECFQKSYVSSQASNDSFLKSYESSASCNEAYQKSYRSSNTSVAYKKSYGSTASSETFHKSYVSVADEDPAEPGDLENFEETVAKVLTKLQAVKALYQVSQEDHCQVQEQMNRLLVKQRELSHELEDCEKELKECLEKPAASQSDKNEIKELQTKLRELQLQYQASMDEQGRLLAVQEQLECQLQCCQEELRQLRENRPSISSEARGKNVNKNVNKNVNEVRSKKTSKACSESSESDFGNEKSLEVVLYYKASQRKLDEIAQEEKEMEEAKGNKKQDKKKSCELATEPAAEPKPEPEPKPAEEEDGVYEEYRQGQDKEASEDEEVESSETAEEGNPLTISESRKNMFGMWKPIVFLAIAAVALYVLPNMRPQETEYCYMK", "length": 1193, "header": "tr|A0A9J7F0B4-1|A0A9J7F0B4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 136 isoform X10 OS=Cricetulus griseus OX=10029 GN=Ccdc136 PE=4 SV=1 CANONICAL=A0A9J7F0B4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H769-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H769/entry", "sequence": { "sequence": "MEAGGAGRRGSAGWSCPGPGPTVTTLGSYELSEGCERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEAEEEQVQKGSSLASLSMSKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEIEQELHLAQEEIQNLRQAAADSASEHESDIASLQEDLCRLQGELDDMERIRGDYEMEIASLRAEMDLKTSEPSEISVSDFSGVQEELQQLRERYHFLNEEYQALQESNSSLTGQLAELESDRTRRATELWLESQMLKSKMSVESQTSELDFPEPNPEMQLLRQQLLGTEEQMQGMKTKCKDLCSELEELQHHRRVSEEEQKRLQRELKCAQNEMLRFQNCHSVTQNEELKNKLCALQLKYEASQDEQNELLKVQLQLQSELRQLKVTRATPIESQNEKVTESKELMCRLQKLQALHQCSEHEKERLLETQHHLQDKLRCHETELQRLRGIVDCLQEKNDKNAGLQAQLQEMKGLYQCSHDELERQKHMYDQLEQDFQLCQQELTDLKASQSACEDNGKVSSKCDALMSRLTELHDKFKGCQQEMGHLQMEQCELLEDQRRLQEEQGQLQEELHRLTFPQPKCGLLQKSKELLSKLQDLCEMQLLYQSMQDQQRKLIKNQENLLKEQLEAHKELREFTDSGFHDVVANPQDTKGPKSSLCENKNMFGMWKPIVFLAIAAVALYVLPNMRPQETEYCYMK", "length": 763, "header": "tr|A0A9J7H769-1|A0A9J7H769_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 136 isoform X9 OS=Cricetulus griseus OX=10029 GN=Ccdc136 PE=4 SV=1 CANONICAL=A0A9J7F0B4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H806-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H806/entry", "sequence": { "sequence": "MEAGGAGRRGSAGWSCPGPGPTVTTLGSYELSEGCERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEAEEEQVQKGSSLASLSMSKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEIEQELHLAQEEIQNLRQAAADSASEHESDIASLQEDLCRLQGELDDMERIRGDYEMEIASLRAEMDLKTSEPSEISVSDFSGVQEELQQLRERYHFLNEEYQALQESNSSLTGQLAELESDRTRRATELWLESQMLKSKMSVESQTSELDFPEPNPEMQLLRQQLLGTEEQMQGMKTKCKDLCSELEELQHHRRVSEEEQKRLQRELKCAQNEMLRFQNCHSVTQNEELKNKLCALQLKYEASQDEQNELLKVQLQLQSELRQLKVTRATPIESQNEKELMCRLQKLQALHQCSEHEKERLLETQHHLQDKLRCHETELQRLRGIVDCLQEKNDKNAGLQAQLQEMKGLYQCSHDELERQKHMYDQLEQDFQLCQQELTDLKASQSACEDNGKVSSKCDALMSRLTELHDKFKGCQQEMGHLQMEQCELLEDQRRLQEEQGQLQEELHRLTFPQPKCGLLQKSKELLSKLQDLCEMQLLYQSMQDQQRKLIKNQENLLKEQLEAHKELREFTDSGFHDVVANPQDTKGPKSSLCENKSKVLMDQLQALQVLYDTSQRQQELLQQEHGRLMEERKRLQAELQLCMEEIQLLQSQSPTIKMSLESYRKTPGSMAPSNESFNRSYDSTIEDNECFQKSYVSSQASNDSFLKSYESSASCNEAYQKSYRSSNTSVAYKKSYGSTASSETFHKSYVSVADEDPAEPGDLENFEETVAKVLTKLQAVKALYQVSQEDHCQVQEQMNRLLVKQRELSHELEDCEKELKECLEKPAASQSDKNEIKELQTKLRELQLQYQASMDEQGRLLAVQEQLECQLQCCQEELRQLRENRPSISSEARGKNVNKNVNKNVNEVRSKKTSKACSESSESDFGNEKNMFGMWKPIVFLAIAAVALYVLPNMRPQETEYCYMK", "length": 1091, "header": "tr|A0A9J7H806-1|A0A9J7H806_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 136 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ccdc136 PE=4 SV=1 CANONICAL=A0A9J7F0B4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8I8/entry", "sequence": { "sequence": "MEAGGAGRRGSAGWSCPGPGPTVTTLGSYELSEGCERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEAEEEQVQKGSSLASLSMSKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEIEQELHLAQEEIQNLRQAAADSASEHESDIASLQEDLCRLQGELDDMERIRGDYEMEIASLRAEMDLKTSEPSEISVSDFSGVQEELQQLRERYHFLNEEYQALQESNSSLTGQLAELESDRTRRATELWLESQMLKSKMSVESQTSELDFPEPNPEMQLLRQQLLGTEEQMQGMKTKCKDLCSELEELQHHRRVSEEEQKRLQRELKCAQNEMLRFQNCHSVTQNEELKNKLCALQLKYEASQDEQNELLKVQLQLQSELRQLKVTRATPIESQNEKVTESKELMCRLQKLQALHQCSEHEKERLLETQHHLQDKLRCHETELQRLRGIVDCLQEKNDKNAGLQAQLQEMKGLYQCSHDELERQKHMYDQLEQDFQLCQQELTDLKASQSACEDNGKVSSKCDALMSRLTELHDKFKGCQQEMGHLQMEQCELLEDQRRLQEEQGQLQEELHRLTFPQPKCGLLQKSKELLSKLQDLCEMQLLYQSMQDQQRKLIKNQENLLKEQLEAHKELREFTDSGFHDVVANPQDTKGPKSSLCENKSKVLMDQLQALQVLYDTSQRQQELLQQEHGRLMEERKRLQAELQLCMEEIQLLQSQSPTIKMSLESYRKTPGSMAPSNESFNRSYDSTIEDNECFQKSYVSSQASNDSFLKSYESSASCNEAYQKSYRSSNTSVAYKKSYGSTASSETFHKSYVSVADEDPAEPGDLENFEETVAKVLTKLQAVKALYQVSQEDHCQVQEQMNRLLVKQRELSHELEDCEKELKECLEKPAASQSDKNEIKELQTKLRELQLQYQASMDEQGRLLAVQEQLECQLQCCQEELRQLRENRPSISSEARGKNVNKNVNKNVNEVRSKKTSKACSESSESDFGNEKSFLYQ", "length": 1065, "header": "tr|A0A9J7J8I8-1|A0A9J7J8I8_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 136 isoform X8 OS=Cricetulus griseus OX=10029 GN=Ccdc136 PE=4 SV=1 CANONICAL=A0A9J7F0B4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8I9/entry", "sequence": { "sequence": "MEAGGAGRRGSAGWSCPGPGPTVTTLGSYELSEGCERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEAEEEQVQKGSSLASLSMSKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEIEQELHLAQEEIQNLRQAAADSASEHESDIASLQEDLCRLQGELDDMERIRGDYEMEIASLRAEMDLKTSEPSEISVSDFSGVQEELQQLRERYHFLNEEYQALQESNSSLTGQLAELESDRTRRATELWLESQMLKSKMSVESQTSELDFPEPNPEMQLLRQQLLGTEEQMQGMKTKCKDLCSELEELQHHRRVSEEEQKRLQRELKCAQNEMLRFQNCHSVTQNEELKNKLCALQLKYEASQDEQNELLKVQLQLQSELRQLKVTRATPIESQNEKVTESKELMCRLQKLQALHQCSEHEKERLLETQHHLQDKLRCHETELQRLRGIVDCLQEKNDKNAGLQAQLQEMKGLYQCSHDELERQKHMYDQLEQDFQLCQQELTDLKASQSACEDNGKVSSKCDALMSRLTELHDKFKGCQQEMGHLQMEQCELLEDQRRLQEEQGQLQEELHRLTFPQPKCGLLQKSKELLSKLQDLCEMQLLYQSMQDQQRKLIKNQENLLKEQLEAHKELREFTDSGFHDVVANPQDTKGPKSSLCENKSKVLMDQLQALQVLYDTSQRQQELLQQEHGRLMEERKRLQAELQLCMEEIQLLQSQSPTIKMSLESYRKTPGSMAPSNESFNRSYDSTIEDNECFQKSYVSSQASNDSFLKSYESSASCNEAYQKSYRSSNTSVAYKKSYGSTASSETFHKSYVSVADEDPAEPGDLENFEETVAKVLTKLQAVKALYQVSQEDHCQVQEQMNRLLVKQRELSHELEDCEKELKECLEKPAASQSDKNEIKELQTKLRELQLQYQASMDEQGRLLAVQEQLECQLQCCQEELRQLRENRPSISSEARGKNVNKNVNKNVNEVRSKKTSKACSESSESDFGNEKNMFGMWKPIVFLAIAAVALYVLPNMRPQETEYCYMK", "length": 1096, "header": "tr|A0A9J7J8I9-1|A0A9J7J8I9_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 136 isoform X6 OS=Cricetulus griseus OX=10029 GN=Ccdc136 PE=4 SV=1 CANONICAL=A0A9J7F0B4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 22, "start_aa": "Thr", "end_pos": 22, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr22", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0B4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0B4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751519", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751519", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "single fertilization", "id": "GO:0007338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007338", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0B4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4" } ], "pmid": "" }, { "name": "acrosome assembly", "id": "GO:0001675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001675", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0B4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "acrosomal membrane", "id": "GO:0002080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002080", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0B4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 800, "end_pos": 802, "annotation": "n_glycosylation_sequon" }, { "start_pos": 804, "end_pos": 806, "annotation": "n_glycosylation_sequon" }, { "start_pos": 828, "end_pos": 830, "annotation": "n_glycosylation_sequon" }, { "start_pos": 853, "end_pos": 855, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F0B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0B4" }, { "id": "PF28341", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28341" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCDC136/SLMAP coiled-coil", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 1192, "start_aa": "Met", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 22 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 293, "end_pos": 295 }, { "start_pos": 721, "end_pos": 723 }, { "start_pos": 800, "end_pos": 802 }, { "start_pos": 804, "end_pos": 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247910", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247910" } ] }, { "annotation": "Involved in early stages of melanosome biogenesis and maturation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3#function" }, { "database": "UniProtKB", "id": "PIRNR037473", "url": "https://www.uniprot.org/uniprotkb/PIRNR037473#function" }, { "database": "UniProtKB", "id": "A0A9J7HBB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBB8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hps3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3", "locus": {} } ], "crossref": [ { "id": "A0A9J7F0D3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F0D3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752245", "url": "https://www.ncbi.nlm.nih.gov/gene/100752245", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029437", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029437", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029438", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029438", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752245", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752245", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0D3", "url": "https://www.orthodb.org/?gene=A0A9J7F0D3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28633", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28633", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28633:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28633:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14761", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14761", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14763", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14763", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247910", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247910", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F0D3", "url": 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"length": 1002, "header": "tr|A0A9J7F0D3-1|A0A9J7F0D3_CRIGR Isoform 1 of Hermansky-Pudlak syndrome 3 protein homolog OS=Cricetulus griseus OX=10029 GN=Hps3 PE=4 SV=1 CANONICAL=A0A9J7F0D3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F0D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3/entry", "sequence": { "sequence": 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"length": 1002, "header": "tr|A0A9J7F0D3-1|A0A9J7F0D3_CRIGR Isoform 1 of Hermansky-Pudlak syndrome 3 protein homolog OS=Cricetulus griseus OX=10029 GN=Hps3 PE=4 SV=1 CANONICAL=A0A9J7F0D3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBB8/entry", "sequence": { "sequence": "MVQLYNLHPFGSQQVVPCQREPEQFCCGGPDALFVASGCKVEAFAVQGTELCQPRCSFSTLGRVLRMAYSEAGDYLVAIEEKSKTTFLRAYMNWRNTRTENSRVCIRMVGHSVEAPFCESFRDQMSIIEMPLSEAPLCISCCPVKGDLLVGCPNKLVLFTLKYCIISEDVSVLDFERSLIIHIDNIIPVEISFCVGYVAVMSDLEVLILKLESEPTNGERVKHHPQKTNNQLKQMEDVSNEASQIESEDFVICLKPMELLGEKCEQSGISVKLESTGLADEKVKYLSVQHLLYRRFAPDISFYVLSDNIKLHSLQLLPIHQTGFPPDGKGLSQEKELLNLFCFFSLPHVGYLYMVVKSVELMSVYWYPEKSQQAVLTPQFLHVITSQSLQCFTVRCSAAVAHDKDLYMDTTFKACPPVSMDVCALRIQLFIGLKAICHFKSHIILLTKADPEAIPERRESPKRLLSRKDASVRSRIPPVPEAGWSLYIVNTIAPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLLRAALLDSSQLEPSEKTELLEAFKESCAHLGDCYSRLDTEQSHLALPYYKMSGLSLAEVLARVAWTGECESQKYERGLIFYINHSLYENLDEELSEELAAKVAQIFHVAEPKQLPHVLCSPSMKNIHPSTALHYLKKLDTCEFSPALVTLTKAAVALKMGDLDMYRNEMKSHSEMKLVYGFILEPRLLIQQWKGQIVPTELAIHLKETQPGLLVASVLGLQKNDKIGIEEADSFFKVLCGKDEDTVPQLLVDFWEAQLVACLPNVVLQELFFKLTSQYIWRLSKRQCPDTIPLRTAEDLINACSHYGLVYPWVHVLISSDSLADKNYTEDLLKLQLATCKKSVYHVRNSEFTDTLEKSRSTDHLALYYSEGLI", "length": 899, "header": "tr|A0A9J7HBB8-1|A0A9J7HBB8_CRIGR Computationally mapped isoform of Hermansky-Pudlak syndrome 3 protein homolog OS=Cricetulus griseus OX=10029 GN=Hps3 PE=4 SV=1 CANONICAL=A0A9J7F0D3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752245", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752245", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3" } ], "pmid": "" }, { "name": "BLOC-2 complex", "id": "GO:0031084", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031084", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 609, "end_pos": 611, "annotation": "n_glycosylation_sequon" }, { "start_pos": 852, "end_pos": 854, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F0D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0D3" }, { "id": "PF14763", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14763" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BLOC-2 complex member HPS3 C-terminal", "eco_id": "ECO_0000259", "start_pos": 496, "end_pos": 999, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F0D3", "database": "UniProtKB", "url": 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"id": "XP_027247982", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247982" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247982", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247982" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nemp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W2", "locus": {} } ], "crossref": [ { "id": "A0A9J7F2W2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F2W2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762649", "url": "https://www.ncbi.nlm.nih.gov/gene/100762649", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019358", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019358", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762649", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762649", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F2W2", "url": "https://www.orthodb.org/?gene=A0A9J7F2W2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13598", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13598", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13598:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13598:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247982", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAZ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J754", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J754", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J754-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J754-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGGIKVDVWSAVGPRPWCSGTGDGGAAWLLLVVFGCVVCGSGTAPAAAARGAAGIDVNVVMLQESQVDMNSSQQFCYKNVLIPKWYDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVTRRFDPKFFLIFLLGLTLFFCGDLLSRSQIFYYSTGVSVGIVASLLIIIFMLSKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWHYLLGYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLASMYASIQIPHIAFALVVIALCTKNLEYPIHWLYITYRKMCKATAKPVPPRLLTEEEYRIQGEVETQKALQELREFCSSPECSAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDEELSSEEEGSEFPTVTQNSFLT", "length": 449, "header": "tr|A0A9J7F2W2-1|A0A9J7F2W2_CRIGR Isoform 1 of Nuclear envelope integral membrane protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nemp1 PE=3 SV=1 CANONICAL=A0A9J7F2W2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F0G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G3/entry", "sequence": { "sequence": 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"MAGGIKVDVWSAVGPRPWCSGTGDGGAAWLLLVVFGCVVCGSGTAPAAAARGAAGIDVNVVMLQESQVDMNSSQQFCYKNVLIPKWYDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVTRRFDPKFFLIFLLGLTLFFCGDLLSRSQIFYYSTGVSVGIVASLLIIIFMLSKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWHYLLGYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLASMYASIQIPHIAFALVVIALCTKNLEYPIHWLYITYRKMCKATAKPVPPRLLTEEEYRIQGEVETQKALQELREFCSSPECSAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDEELSSEEEGSEFPTVTQNSFLT", "length": 449, "header": "tr|A0A9J7F2W2-1|A0A9J7F2W2_CRIGR Isoform 1 of Nuclear envelope integral membrane protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nemp1 PE=3 SV=1 CANONICAL=A0A9J7F2W2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4G9/entry", "sequence": { "sequence": "MAGGIKVDVWSAVGPRPWCSGTGDGGAAWLLLVVFGCVVCGSGTAPAAAARGAAGIDVNVVMLQESQVDMNSSQQFCYKNVLIPKWYDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVTRRFDPKFFLIFLLGLTLFFCGDLLSRSQIFYYSTGVSVGIVASLLIIIFMLSKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWHYLLGYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLASMYASIQIPHIAFALVVIALCTKNLEYPIHWLYITYSLVCQELTVTKDVCGREVGVMTLNV", "length": 361, "header": "tr|A0A9J7F4G9-1|A0A9J7F4G9_CRIGR Computationally mapped isoform of Nuclear envelope integral membrane protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Nemp1 PE=3 SV=1 CANONICAL=A0A9J7F2W2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V4/entry", "sequence": { "sequence": "MAGGIKVDVWSAVGPRPWCSGTGDGGAAWLLLVVFGCVVCGSAGIDVNVVMLQESQVDMNSSQQFCYKNVLIPKWYDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVTRRFDPKFFLIFLLGLTLFFCGDLLSRSQIFYYSTGVSVGIVASLLIIIFMLSKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWHYLLGYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLASMYASIQIPHIAFALVVIALCTKNLEYPIHWLYITYRKMCKATAKPVPPRLLTEEEYRIQGEVETQKALQELREFCSSPECSAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDEELSSEEEGSEFPTVTQNSFLT", "length": 438, "header": "tr|A0A9J7F5V4-1|A0A9J7F5V4_CRIGR Computationally mapped isoform of Nuclear envelope integral membrane protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nemp1 PE=3 SV=1 CANONICAL=A0A9J7F2W2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ8/entry", "sequence": { "sequence": "MAGGIKVDVWSAVGPRPWCSGTGDGGAAWLLLVVFGCVVCGSGTAPAAAARGAAGIDVNVVMLQESQVDMNSSQQFCYKNVLIPKWYDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVTRRFDPKFFLIFLLGLTLFFCGDLLSRSQIFYYSTGVSVGIVASLLIIIFMLSKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWHYLLGYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLASMYASIQIPHIAFALVVIALCTKNLEYPIHWLYITYRPQVQFSDLVTDCQIAPEIPVLF", "length": 359, "header": "tr|A0A9J7HAZ8-1|A0A9J7HAZ8_CRIGR Computationally mapped isoform of Nuclear envelope integral membrane protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Nemp1 PE=3 SV=1 CANONICAL=A0A9J7F2W2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J754-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J754/entry", "sequence": { "sequence": "MAGGIKVDVWSAVGPRPWCSGTGDGGAAWLLLVVFGCVVCGSAGIDVNVVMLQESQVDMNSSQQFCYKNVLIPKWYDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQSQIFYYSTGVSVGIVASLLIIIFMLSKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWHYLLGYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLASMYASIQIPHIAFALVVIALCTKNLEYPIHWLYITYRKMCKATAKPVPPRLLTEEEYRIQGEVETQKALQELREFCSSPECSAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDEELSSEEEGSEFPTVTQNSFLT", "length": 365, "header": "tr|A0A9J7J754-1|A0A9J7J754_CRIGR Computationally mapped isoform of Nuclear envelope integral membrane protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Nemp1 PE=3 SV=1 CANONICAL=A0A9J7F2W2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0G3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762649", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762649", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243694", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243694" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0L9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rrn3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0L9", "locus": {} } ], "crossref": [ { "id": "A0A9J7F0L9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F0L9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751564", "url": "https://www.ncbi.nlm.nih.gov/gene/100751564", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007991", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007991", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751564", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751564", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0L9", "url": "https://www.orthodb.org/?gene=A0A9J7F0L9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12790", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12790", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12790:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12790:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243694", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243694", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F0L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0L9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPLLHTRLPGDVAAAAPATLSAPGTGLSDMLALESDFFNSSPRKTVRFGGTVTEVLLKYKKGETNDLELLKNQLSDPDIKDDQIINWLLEFRSSVMYLTKDFEQLINIILRLPWLKRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGGIDVSDSDDEDDDLPSNFDTCHRALQIITRYVPSTPWFLMPILVDKFPFVRKSERTLECYVHNLLRISVYFPTLRREILELIIEKLLKLDVSVSRQDIEDAEEAAAQTCGTDTTEGLFNMDEDEDTEPERKADLDRTSQMAHPIAERLDILLSLLLSYIEDVCRVDGKIDNNKTKDLYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHMYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQILSGNLKEGLRYLQSLNFERVVLSQLNPLKICLPSVVNFFAAVTNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPIYQIWEDMSAEELQEFKKPTKKEPVEDEDDDFLKGEVPQMDAGIGLTPSSFDTHFRSPSSSVGSPPVLYMPDQSPLISRICD", "length": 655, "header": "tr|A0A9J7F0L9-1|A0A9J7F0L9_CRIGR Isoform 1 of RNA polymerase I-specific transcription initiation factor RRN3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rrn3 PE=3 SV=1 CANONICAL=A0A9J7F0L9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F0L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0L9/entry", "sequence": { "sequence": "MAAPLLHTRLPGDVAAAAPATLSAPGTGLSDMLALESDFFNSSPRKTVRFGGTVTEVLLKYKKGETNDLELLKNQLSDPDIKDDQIINWLLEFRSSVMYLTKDFEQLINIILRLPWLKRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGGIDVSDSDDEDDDLPSNFDTCHRALQIITRYVPSTPWFLMPILVDKFPFVRKSERTLECYVHNLLRISVYFPTLRREILELIIEKLLKLDVSVSRQDIEDAEEAAAQTCGTDTTEGLFNMDEDEDTEPERKADLDRTSQMAHPIAERLDILLSLLLSYIEDVCRVDGKIDNNKTKDLYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHMYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQILSGNLKEGLRYLQSLNFERVVLSQLNPLKICLPSVVNFFAAVTNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPIYQIWEDMSAEELQEFKKPTKKEPVEDEDDDFLKGEVPQMDAGIGLTPSSFDTHFRSPSSSVGSPPVLYMPDQSPLISRICD", "length": 655, "header": "tr|A0A9J7F0L9-1|A0A9J7F0L9_CRIGR Isoform 1 of RNA polymerase I-specific transcription initiation factor RRN3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rrn3 PE=3 SV=1 CANONICAL=A0A9J7F0L9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel internal stop codons :: corrected 4 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244176" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Q6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759078", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Q6", "locus": {} } ], "crossref": [ { "id": "100759078", "url": "https://www.ncbi.nlm.nih.gov/gene/100759078", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000264", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000264", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759078", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759078", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F0Q6", "url": "https://www.orthodb.org/?gene=A0A9J7F0Q6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11385", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11385", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11385:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11385:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00273", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00273", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244176", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F0Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIIKTLSLFVLFSYIKCESLQTSLLHAACQYSNRQDHLEENLKRQILGFSASIMVAQFLQDAAYEEVQNVAEELLDLAENCKSLRPYESPAECVHQLMPTFLTHICNNQGPVGSDVFTKCCXMENTARLKCFLSYEKDDADDIDTLLILRPELTCERDVGSHMSLKARYNYVISRRYPFLYGATILTMSACDETAVWLCCQEENKTECLQTKLEPIRNYIREISARHHHLCEIRIKFNDKIARAVELILLTKKXPKANFSEIAKLTTDIKNLHETCCEGNTVACVLGRHQLMNYTCSNQAILSSKFAQCCEXPEPFRGECIINSGNDDKPNLSPLSFRRFTEDQSACKQFSNKQDDFLQEFLYEYSRRHPELAVPVILRVYATYKHLLEKCCKLESPLECHSCGKEMFQRVVSENRDCVKTYCDLYKKLGGPSFQDRLTVLYTKKAPQLSSQELVIFMRKMAAAASRCCPLSDELQPACVEDAAKLILGALCRRHDAKPVNAGMGHCCDNSYAFRKSCFEDLHVDGTYTPPPLSCNQVISLEEDLCXAQEEVLHIEKQKLLGNLVKQKPHAAEEEFLSIGEDFMQLVEMCCHAEKREMCFQEEGLQLIRRCQSLLETDSIPESADVGSSVRSAIWKI", "length": 638, "header": "tr|A0A9J7F0Q6-1|A0A9J7F0Q6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: alpha-fetoprotein OS=Cricetulus griseus OX=10029 GN=LOC100759078 PE=4 SV=1 CANONICAL=A0A9J7F0Q6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F0Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Q6/entry", "sequence": { "sequence": "MEIIKTLSLFVLFSYIKCESLQTSLLHAACQYSNRQDHLEENLKRQILGFSASIMVAQFLQDAAYEEVQNVAEELLDLAENCKSLRPYESPAECVHQLMPTFLTHICNNQGPVGSDVFTKCCXMENTARLKCFLSYEKDDADDIDTLLILRPELTCERDVGSHMSLKARYNYVISRRYPFLYGATILTMSACDETAVWLCCQEENKTECLQTKLEPIRNYIREISARHHHLCEIRIKFNDKIARAVELILLTKKXPKANFSEIAKLTTDIKNLHETCCEGNTVACVLGRHQLMNYTCSNQAILSSKFAQCCEXPEPFRGECIINSGNDDKPNLSPLSFRRFTEDQSACKQFSNKQDDFLQEFLYEYSRRHPELAVPVILRVYATYKHLLEKCCKLESPLECHSCGKEMFQRVVSENRDCVKTYCDLYKKLGGPSFQDRLTVLYTKKAPQLSSQELVIFMRKMAAAASRCCPLSDELQPACVEDAAKLILGALCRRHDAKPVNAGMGHCCDNSYAFRKSCFEDLHVDGTYTPPPLSCNQVISLEEDLCXAQEEVLHIEKQKLLGNLVKQKPHAAEEEFLSIGEDFMQLVEMCCHAEKREMCFQEEGLQLIRRCQSLLETDSIPESADVGSSVRSAIWKI", "length": 638, "header": "tr|A0A9J7F0Q6-1|A0A9J7F0Q6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: alpha-fetoprotein OS=Cricetulus griseus OX=10029 GN=LOC100759078 PE=4 SV=1 CANONICAL=A0A9J7F0Q6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247684", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247684" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F144", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F144" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772381", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F144", "locus": {} } ], "crossref": [ { "id": "A0A9J7F144", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F144", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772381", "url": "https://www.ncbi.nlm.nih.gov/gene/100772381", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040118", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040118", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772381", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772381", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F144", "url": "https://www.orthodb.org/?gene=A0A9J7F144", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22245", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22245", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22245:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22245:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14915", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14915", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247684", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247684", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F144", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F144", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F144-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F144-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDFDDLTQSSEISSFGKFPCPNYEAVLKLIEHLSLECKDSDSLLKIQDTIHSYKRLIQFKSSHCKALEGKLGIMENEVTGLHKKLSEAEHEKIKQEQELYNLRFALKQEEEKRKNADWVYEKIKEQLREKEAQYNKEVKVKQKLEIRVRELDLELKTVINNLNKATEERNGIERQLLQEQNVRILQDEILANQLHKQKELKMAQEKISSQFQEALDQHQQEPAECIKKMQDYIQKLGLENCKLKATARKQAEKIEQLKKNLVSEILNDDLTAKLETASSKCLHLHKENQLLQQELLSMKTIQKKCEKLKKHKRKLEQEIVNLKVYMEKNMIECGQMEQYKWEIEEKTKQALAEKLKQVNLFLQTQAAYEDKLEKLRHEQNASVRTEMELRIRDLESEFCKMKSQVDCNQIEMENYKQLYLEEVKIRKSLSNKLSITDERLAKVKTKLLQERKQNRTSQYSTIDTRSVLESTCQRDLSNRFFIPRSFSGENVMVPTSNLWHSIETTENCKTKYTAVYICRRIRGGTDGFELPTAAPGDVLVAFEALCVRDLYFELGKPSAKPRCPPLSQVDKKGRRAASASSAGLMELRPSQSTASSPALSPVSQSVTLTYPAL", "length": 614, "header": "tr|A0A9J7F144-1|A0A9J7F144_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 26-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772381 PE=4 SV=1 CANONICAL=A0A9J7F144-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F144-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F144/entry", "sequence": { "sequence": "MEDFDDLTQSSEISSFGKFPCPNYEAVLKLIEHLSLECKDSDSLLKIQDTIHSYKRLIQFKSSHCKALEGKLGIMENEVTGLHKKLSEAEHEKIKQEQELYNLRFALKQEEEKRKNADWVYEKIKEQLREKEAQYNKEVKVKQKLEIRVRELDLELKTVINNLNKATEERNGIERQLLQEQNVRILQDEILANQLHKQKELKMAQEKISSQFQEALDQHQQEPAECIKKMQDYIQKLGLENCKLKATARKQAEKIEQLKKNLVSEILNDDLTAKLETASSKCLHLHKENQLLQQELLSMKTIQKKCEKLKKHKRKLEQEIVNLKVYMEKNMIECGQMEQYKWEIEEKTKQALAEKLKQVNLFLQTQAAYEDKLEKLRHEQNASVRTEMELRIRDLESEFCKMKSQVDCNQIEMENYKQLYLEEVKIRKSLSNKLSITDERLAKVKTKLLQERKQNRTSQYSTIDTRSVLESTCQRDLSNRFFIPRSFSGENVMVPTSNLWHSIETTENCKTKYTAVYICRRIRGGTDGFELPTAAPGDVLVAFEALCVRDLYFELGKPSAKPRCPPLSQVDKKGRRAASASSAGLMELRPSQSTASSPALSPVSQSVTLTYPAL", "length": 614, "header": "tr|A0A9J7F144-1|A0A9J7F144_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 26-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772381 PE=4 SV=1 CANONICAL=A0A9J7F144-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 381, "end_pos": 383 }, { "start_pos": 455, "end_pos": 457 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F156-1", "uniprot_ac": "A0A9J7F156", "uniprot_id": "A0A9J7F156_CRIGR", "mass": { "chemical_mass": 36375.0, "monoisotopic_mass": 36375.0 }, "refseq": { "ac": "XP_027240945", "name": "proline-rich protein 27", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240945" }, "gene_names": [ { "name": "Prr27", "type": "recommended", "evidence": [ { "id": "A0A9J7F156", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F156" } ] }, { "name": "Prr27", "type": "synonym", "evidence": [ { "id": "XP_027240945", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240945" } ] } ], "protein_names": [ { "name": "Proline-rich protein 27", "type": "synonym", "evidence": [ { "id": "A0A9J7F156", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F156/entry#names_and_taxonomy" } ] }, { "name": "proline-rich protein 27", "type": "synonym", "evidence": [ { "id": "XP_027240945", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240945" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616021.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027240945", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240945" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F156", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F156" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prr27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F156", "locus": {} } ], "crossref": [ { "id": "A0A9J7F156", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F156", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756200", "url": "https://www.ncbi.nlm.nih.gov/gene/100756200", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033533", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756200", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F156", "url": "https://www.orthodb.org/?gene=A0A9J7F156", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39415", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39415", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39415:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39415:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027240945", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240945", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F156", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F156", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F156-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F156-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLLLWACLMCVAFAKRRRYPFIHKKSPMHSEEDYFGHRYPLNPSLNIPYGLWNDNLPPFLLPPVDNHQGNTITKFAGNPDLDRGLSPYPWILTSKVHYIYPNPSYPSDASMNGPAAVTAPIPPPPPPPSRPYPFIIPPKISVSSMAPEAPGAQAVPAVGEGLVPEFAPVPDKGISGLPTAAKLGPQPPPPEPKPPAAEPAPAQFAASEPAPVQFGAPEPVPIPESPAGHPIAPEPAPPPVVAAAQAISAESPAGQSAENKPVSGEPSMVQSIPLEPAPSQSAEVKPPGADPAAAQPPPAEPVASQPLAGKIVTSEPTEVKSEGAEPAEPKPGSQEPQPFLFYQVDK", "length": 347, "header": "tr|A0A9J7F156-1|A0A9J7F156_CRIGR Isoform 1 of Proline-rich protein 27 OS=Cricetulus griseus OX=10029 GN=Prr27 PE=4 SV=1 CANONICAL=A0A9J7F156-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F156-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F156/entry", "sequence": { "sequence": "MKLLLWACLMCVAFAKRRRYPFIHKKSPMHSEEDYFGHRYPLNPSLNIPYGLWNDNLPPFLLPPVDNHQGNTITKFAGNPDLDRGLSPYPWILTSKVHYIYPNPSYPSDASMNGPAAVTAPIPPPPPPPSRPYPFIIPPKISVSSMAPEAPGAQAVPAVGEGLVPEFAPVPDKGISGLPTAAKLGPQPPPPEPKPPAAEPAPAQFAASEPAPVQFGAPEPVPIPESPAGHPIAPEPAPPPVVAAAQAISAESPAGQSAENKPVSGEPSMVQSIPLEPAPSQSAEVKPPGADPAAAQPPPAEPVASQPLAGKIVTSEPTEVKSEGAEPAEPKPGSQEPQPFLFYQVDK", "length": 347, "header": "tr|A0A9J7F156-1|A0A9J7F156_CRIGR Isoform 1 of Proline-rich protein 27 OS=Cricetulus griseus OX=10029 GN=Prr27 PE=4 SV=1 CANONICAL=A0A9J7F156-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MGNLTSQPIYLALQELLHSKGLKLEKGQEVLEQLKEECSMISEKDSSEESSSESEEELELLVKKMERSSLWTRSESCEVEPTAPGLPPPPYNVTSSPSSSGGGGQSFCPEVWKEVRHELCYPVFQNNEEQRYHEPLDFKTIKALAESVRTYGVTSAFTTAQVEALNHHCMTPSNWMSLVRTSLSPGQYLDWKAFLIEYANEQAAVNRAVENAAWDVDMLLRPGRFAQQQIGYLLQVFQQINNITTRAWKSLPNKGEVSGNLTKIIQGPMEPFSDFVARMVEAAGRIFGDPDLAMPLIKHLVFEQCTKECKAAITPYKNKGLEAWMKVCRKLGGPLTNAGLTAEDTKLKQARKGSKGTCFCCGKMGHLKRQCPESRSRHEPGTGNHPKQPGLCPECKKGNHWANECRSVKDIHGQPLTQQYGGAHLKNGQRVP", "length": 432, "header": "tr|A0A9J7F183-1|A0A9J7F183_CRIGR Isoform 1 of Endogenous retrovirus group K member 113 Gag polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113832559 PE=4 SV=1 CANONICAL=A0A9J7F183-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 82, "start_aa": "Thr", "end_pos": 82, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr82", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F183", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F183" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F183", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F183" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832559", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832559", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F183", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F183" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F183", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F183" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "viral process", "id": "GO:0016032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F183", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F183" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F183" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 358, "end_pos": 373, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 82 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 }, { "start_pos": 260, "end_pos": 262 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F197-1", "uniprot_ac": "A0A9J7F197", "uniprot_id": "A0A9J7F197_CRIGR", "mass": { "chemical_mass": 35109.0, "monoisotopic_mass": 35109.0 }, "refseq": { "ac": "XP_003512339", "name": "sulfotransferase 1 family member D1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512339" }, "gene_names": [ { "name": "LOC100763252", "type": "recommended", "evidence": [ { "id": "A0A9J7F197", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197" } ] }, { "name": "LOC100763252", "type": "synonym", "evidence": [ { "id": "XP_003512339", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512339" } ] } ], "protein_names": [ { "name": "Sulfotransferase", "type": "recommended", "evidence": [ { "id": "A0A9J7F197", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197/entry#names_and_taxonomy" } ] }, { "name": "2.8.2.-", "type": "synonym", "evidence": [ { "id": "A0A9J7F197", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197/entry#names_and_taxonomy" } ] }, { "name": "sulfotransferase 1 family member D1", "type": "synonym", "evidence": [ { "id": "XP_003512339", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512339" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615412.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003512339", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512339" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F197", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763252", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197", "locus": {} } ], "crossref": [ { "id": "A0A9J7F197", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F197", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763252", "url": "https://www.ncbi.nlm.nih.gov/gene/100763252", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763252", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763252", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IAEEWSQ", "url": "https://omabrowser.org/oma/group/IAEEWSQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F197", "url": "https://www.orthodb.org/?gene=A0A9J7F197", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11783", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11783", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003512339", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512339", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F197", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F197-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKKLDIFRRELVDVHGIPLFWSIAEQWSQVESFEARPDDLLISTYPKSGTTWISEILDLIYNNGDAEKCKRDAIYKRVPFMELIIPGLSNGVELLKNMHSPRLVKTHLPVQLLPSSFWKNDCKMVYVARNAKDVAVSYYYFYQMAKIHPEPGTWEEFLDKFMAGQVGFGSWYDHVKGWWEKRNDYRILYLFYEDMKEDPKYEIQKLLKFLEKDMPEEIVNKILYHSSFNVMKENPNANYTTMKKEEMDHAVSPFMRKGISGDWKNQFTVAQYEKFEDDYVKKMKESTLKFRSEI", "length": 295, "header": "tr|A0A9J7F197-1|A0A9J7F197_CRIGR Isoform 1 of Sulfotransferase OS=Cricetulus griseus OX=10029 GN=LOC100763252 PE=3 SV=1 CANONICAL=A0A9J7F197-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F197-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197/entry", "sequence": { "sequence": "MDKKLDIFRRELVDVHGIPLFWSIAEQWSQVESFEARPDDLLISTYPKSGTTWISEILDLIYNNGDAEKCKRDAIYKRVPFMELIIPGLSNGVELLKNMHSPRLVKTHLPVQLLPSSFWKNDCKMVYVARNAKDVAVSYYYFYQMAKIHPEPGTWEEFLDKFMAGQVGFGSWYDHVKGWWEKRNDYRILYLFYEDMKEDPKYEIQKLLKFLEKDMPEEIVNKILYHSSFNVMKENPNANYTTMKKEEMDHAVSPFMRKGISGDWKNQFTVAQYEKFEDDYVKKMKESTLKFRSEI", "length": 295, "header": "tr|A0A9J7F197-1|A0A9J7F197_CRIGR Isoform 1 of Sulfotransferase OS=Cricetulus griseus OX=10029 GN=LOC100763252 PE=3 SV=1 CANONICAL=A0A9J7F197-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F197", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F197", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F197" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763252", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763252", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BPX1-1", "protein_name": "Sulfotransferase", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDNKQDIFRRDLVDFQGVPLFWSITEEWSQVESFESRPDDLLISTYPKSGTTWTSEILDLIYNNGDVEKCKRDAIYKRVPFMELIVPGLSNGVKELNDMQSPRLVKTHLPVQLLPSSFWKNNCKIVYVARNAKDVAVSYYYFYQMAKIHPEPGTWEEFLDKFIAGKVAFGSWYDHVKGWWEKRKDHRILYLFFEDMKKDPKCEIQKLLKFLDKDLPEETVDKILYHSSFDMMKQNPSANYTTLPKFSMDHSLSPFMRKGISGDWKNQFTVAQYERFEEDYKKKMKGSTLQFCSEI", "length": 295 }, "evidence": [ { "id": 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"MGNDEVIRQDLGCLYDIPLYKCFVAGWPQVEAFQARPDDLLIATYPKSGTTWLSEILDAIYHDGDLEKCRRDAIYNRVPFLEMKAPGILSGVEQLEKIPSPRLVKTHLPVHLLPASFQEKDCKVIYMARNAKDVVISYYYFYQMAKIHPDPGTLSEFLQAFMDGKVAYGSWYKHVKGWWEKRHEKRLLYLFYEDMKKDPRREIQKILQFLGKEVAEETVARILHHTSFQEMKKNPATNYETMPTELMDHSLSPFMRKGISGDWANHFTVAQNERFDQHYQQQMAGSDLCFQMEA", "length": 294 }, "evidence": [ { "id": "A0A9J7F197", "url": "https://omabrowser.org/oma/group/A0A9J7F197/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3V9R3-1", "protein_name": "Sulfotransferase 1 family member D1", "gene_name": "Sult1d1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDNKLDVFRRELVDVQGIPLFWSIAEQWSQVESFEARPDDILISTYPKSGTTWISEILDLIYNNGDAEKCKRDAIYRRVPFMELIIPGITNGVEMLNNMQSPRLVKTHLPVQLLPSSFWKNDCKMIYVARNAKDVAVSYYYFHQMAKMHPEPGTWEEFLEKFMAGQVSFGPWYDHVKGWWEKRKEYRILYLFYEDMKEDPKCEIQKVLKFLEKDIPEEVVNKILYHSSFSVMKANPSANYTTMMKEEMDQSVSPFMRKGISGDWKNQFTVAQYEKFEEDYVKKMEESTLKFRSEI", "length": 295 }, 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}, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F198-1", "uniprot_ac": "A0A9J7F198", "uniprot_id": "A0A9J7F198_CRIGR", "mass": { "chemical_mass": 66938.0, "monoisotopic_mass": 66938.0 }, "refseq": { "ac": "XP_027244378", "name": "LOW QUALITY PROTEIN: 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244378", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244378" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F198", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F198" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp1r18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F198", "locus": {} } ], "crossref": [ { "id": "100764073", "url": "https://www.ncbi.nlm.nih.gov/gene/100764073", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764073", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764073", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F198", "url": "https://www.orthodb.org/?gene=A0A9J7F198", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21685", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21685", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21685:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21685:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13914", "url": 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"type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 487, "start_aa": "Thr", "end_pos": 487, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr487", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F198", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F198" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F198", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F198" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764073", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764073", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F198", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F198" } ], "pmid": "" }, { "name": "phosphatase binding", "id": "GO:0019902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019902", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F198", "url": 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computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246959", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246959" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam149a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J8", "locus": {} } ], "crossref": [ { "id": "A0A9J7F4J8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F4J8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751039", "url": "https://www.ncbi.nlm.nih.gov/gene/100751039", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"MKVAVLDLGSLFAKIFKTSASPAVPSHPGSSVATGSVSSTSLSRAETPTLLPSLPLDSTTSLEPSTPLYPALHPRSSAATRRVETAGCPGSLPNSPGASRELPLVSCSGSAGSGSLASVALPIPGTVWATLPSVTIPVGSNSNAISSPRNTHQSPGPGEQGPSAWMAPGPVPKTLFFTLPDIGEEWASDSDSQDDLEGRGLSEGLGKRSSTKSKDPLPTNFTRNVQKAIDKYASESLSSFSSSGSHTPTEAHNSWPGSSTQSSTTGLSTERSSVSSWRDDEFDKVNAQKVQQLFWEVEEMLFEEKVSPQTQNLLAECSEWARRSLHLRLIGRQLIPPSDEGFRHFQGSLPSSATHKPLPPVPGHIRNIRELCVSGSQIVPEAPSASTLTDPDGTELTDPTSSSSLEEEVYHVDGNMEEYFAFDRKQDGDEHLEQNPTLRGRKWHRHGLPPISPHDCIRDAVAAEVFDHVWTNVVEILEDLTRRTWESALTDEKAHKEKLKVTEHRPPHVLVSRVSTDVPSVPPSRSSETLHTSLASHFNPPQFSQLHRFSSNFYSDLSGVMTIQAKPLQQRPTYFADKIQNEQDDKLFGGGIGAPSRHRLGRIPDPRGPPTSAKKTPVHRRLPSIASDPQRLKTPTIYSDEILRGTKLQTGIDHLPSSAIPTSRSRLPPIGSEAGELNTAASGSRPVSYRGRHPQNRVFSAIPDSIERSPLRERTIVLEQLSRPSTTHTFQSDTPRKGSLTPMEFVAHTWTGQSILTGSQYLPKSYQRATLTARKRFQVAL", "length": 781, "header": "tr|A0A9J7F4J8-1|A0A9J7F4J8_CRIGR Isoform 1 of Protein FAM149A isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam149a PE=3 SV=1 CANONICAL=A0A9J7F4J8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F1E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E1/entry", "sequence": { "sequence": "MLFEEKVSPQTQNLLAECSEWARRSLHLRLIGRQLIPPSDEGFRHFQGSLPSSATHKPLPPVPGHIRNIRELCVSGSQIVPEAPSASTLTDPDGTELTDPTSSSSLEEEVYHVDGNMEEYFAFDRKQDGDEHLEQNPTLRGRKWHRHGLPPISPHDCIRDAVAAEVFDHVWTNVVEILEDLTRRTWESALTDEKAHKEKLKVTEHRPPHVLVSRVSTDVPSVPPSRSSETLHTSLASHFNPPQFSQLHRFSSNFYSDLSGVMTIQAKPLQQRPTYFADKIQNEQDDKLFGGGIGAPSRHRLGRIPDPRGPPTSAKKTPVHRRLPSIASDPQRLKTPTIYSDEILRGTKLQTGIDHLPSSAIPTSRSRLPPIGSEAGELNTAASGSRPVSYRGRHPQNRVFSAIPDSIERSPLRERTIVLEQLSRPSTTHTFQSDTPRKGSLTPMEFVAHTWTGQSILTGSQYLPKSYQRATLTARKRFQVAL", "length": 482, "header": "tr|A0A9J7F1E1-1|A0A9J7F4J8_CRIGR Computationally mapped isoform of Protein FAM149A isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam149a PE=3 SV=1 CANONICAL=A0A9J7F4J8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J8/entry", "sequence": { "sequence": "MKVAVLDLGSLFAKIFKTSASPAVPSHPGSSVATGSVSSTSLSRAETPTLLPSLPLDSTTSLEPSTPLYPALHPRSSAATRRVETAGCPGSLPNSPGASRELPLVSCSGSAGSGSLASVALPIPGTVWATLPSVTIPVGSNSNAISSPRNTHQSPGPGEQGPSAWMAPGPVPKTLFFTLPDIGEEWASDSDSQDDLEGRGLSEGLGKRSSTKSKDPLPTNFTRNVQKAIDKYASESLSSFSSSGSHTPTEAHNSWPGSSTQSSTTGLSTERSSVSSWRDDEFDKVNAQKVQQLFWEVEEMLFEEKVSPQTQNLLAECSEWARRSLHLRLIGRQLIPPSDEGFRHFQGSLPSSATHKPLPPVPGHIRNIRELCVSGSQIVPEAPSASTLTDPDGTELTDPTSSSSLEEEVYHVDGNMEEYFAFDRKQDGDEHLEQNPTLRGRKWHRHGLPPISPHDCIRDAVAAEVFDHVWTNVVEILEDLTRRTWESALTDEKAHKEKLKVTEHRPPHVLVSRVSTDVPSVPPSRSSETLHTSLASHFNPPQFSQLHRFSSNFYSDLSGVMTIQAKPLQQRPTYFADKIQNEQDDKLFGGGIGAPSRHRLGRIPDPRGPPTSAKKTPVHRRLPSIASDPQRLKTPTIYSDEILRGTKLQTGIDHLPSSAIPTSRSRLPPIGSEAGELNTAASGSRPVSYRGRHPQNRVFSAIPDSIERSPLRERTIVLEQLSRPSTTHTFQSDTPRKGSLTPMEFVAHTWTGQSILTGSQYLPKSYQRATLTARKRFQVAL", "length": 781, "header": "tr|A0A9J7F4J8-1|A0A9J7F4J8_CRIGR Isoform 1 of Protein FAM149A isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam149a PE=3 SV=1 CANONICAL=A0A9J7F4J8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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}, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F1E6-1", "uniprot_ac": "A0A9J7F1E6", "uniprot_id": "A0A9J7F1E6_CRIGR", "mass": { "chemical_mass": 13849.0, "monoisotopic_mass": 13849.0 }, "refseq": { "ac": "XP_027248646", "name": "KH homology 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244451", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244451" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1I5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832459", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I5", "locus": {} } ], "crossref": [ { "id": "A0A9J7F1I5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F1I5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832459", "url": "https://www.ncbi.nlm.nih.gov/gene/113832459", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832459", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832459", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F1I5", "url": "https://www.orthodb.org/?gene=A0A9J7F1I5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14742", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14742", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14742:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14742:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04032", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04032", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244451", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244451", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F1I5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPVKDREAFQRLSFLYQAAHCVLSQNPENQALARFYCHTEKTLVLRQDPSVKRTLCRGCSSLLIPGLTCTQRQRRQKGLRWTVQTCLTCQRSQRFLNDPKHLLWGDRPEAQLENQADFKPSEPLPNIAHLPKENPQPQASNTSDEFTPFSR", "length": 153, "header": "tr|A0A9J7F1I5-1|A0A9J7F1I5_CRIGR Isoform 1 of Ribonuclease P protein subunit p21-like OS=Cricetulus griseus OX=10029 GN=LOC113832459 PE=3 SV=1 CANONICAL=A0A9J7F1I5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F1I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I5/entry", "sequence": { "sequence": "MAGPVKDREAFQRLSFLYQAAHCVLSQNPENQALARFYCHTEKTLVLRQDPSVKRTLCRGCSSLLIPGLTCTQRQRRQKGLRWTVQTCLTCQRSQRFLNDPKHLLWGDRPEAQLENQADFKPSEPLPNIAHLPKENPQPQASNTSDEFTPFSR", "length": 153, "header": "tr|A0A9J7F1I5-1|A0A9J7F1I5_CRIGR Isoform 1 of Ribonuclease P protein subunit p21-like OS=Cricetulus griseus OX=10029 GN=LOC113832459 PE=3 SV=1 CANONICAL=A0A9J7F1I5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF15232", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F1I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGNKKCTDGFSDTSSIGSVLDDADREVSNLTDRAFRSLCISESFHDSDLTLSPDITTQGFGTFHQGTVSHTNRKSGIWSQLPSQGTEHSGWAATFQQQPKYVQGEEKYPKNSPPTTPAQRRLEVPISGLRSSSKPISKVSSLIRSFDRTENQPCDSRPPPSKPPALKNPSKFAPPPEGGVNFCFDSAFLTVRRVPAEASNTHPSSHQPGRVSGEQESPKNPEVACHSSDSHLQTPDRMVDSFEPRFPSPPLKPAKAEPGRGKELAPRGTFLHSENSAFESWTSHQPKLPERKDIAETIPESKAPKHYEDMPLLKEPHPSESKVFPCQGPANCAQEETRSASGSQSTSGTWGARDPGSQVFPVEGNASQIDPQMKRSQPPWRKPKTGKGGTDGPHDTLEDKKQPNRRGLPLYSKLNPQGQLPENDVLDMPEDSNDHYSPPFNISELLTPIIPTKHVLESSDTQPVEIIPSPPGQLNGYQEKEPSEAQSRDSYKSKAPSLLFNLKDVRKRVKSTYSPLPLLKSFDEKTRGKLDGKQEPVSNGVTLPNGLEENPPTQLLKEMPADAPSILHSSTQKDPAINSSESFADNHLTLGSPSASSKTHFSVNGETTERSRNKKEDANGVSEQGPSESGWHPDAREHLPRKHLSLKLHNRESETGQATEKMKPHQLENGLSRSISQETEPEQEMGLQNLPLNQKFSPGPLSPEEEDVFYSDSQSDFTPCLQTKAKFSTSSSDQSFASFDDQHKMWFTEGPREDRKSRVSAGDDQKDEKETVMEKDEPQQCALSNGRTGVEEHGQEEIQRKAQGWSGGTPGKASVEEVNFRGSWVGVDKDTALPHAKDSAPLPACTNKHRLFPLKDNTLRATPVIKPIILPLLRTVSSEDSLVGGHKENELPRQQWGEDAGGLCASESQKMLTTPLSSNTQQTCVVCEVGEEDPAHTAAQAEISQQARKGSFSFLPLVEEEGKIKPPPDITGEAPARAKSGSVESGNLAAPQHIPTIALPPDDLEDPPHSLPLHTCWEEQGFQGHFLSAPRAGPSGRRLVPSEAATSPNPSSLGESSTCSPVASSVWEEASQAAGEQWLHQEPPGPRPWASPGRARLTRREDMTHGLTWEAEGSDPQLERLANLRTLSPRGTLLADTAEKPEPPALLERAAAGKPPAVPPKTEKALRRAKKLASKRRKSDQAPEKHTEAWEVKSFTEDTQGTELRPVSPGKGPRLRFPAVRSLPPPTHRHSVSCGWETEGRRPWGLQHPMPQSPYPATQKVLQDPQSGQYFVFDVPLQVKVKTFYDPETGKYVKVSVPSSEEASSEPPLQDALAAPYLLYPGFQPVPVTLMPLRCSSQLAAPTFLRQGSGHRPQSSQGARLQPPPEHLGESTQHASAPRPCGPPHSPEEEGAEAPSLSIISTDDLEDFATEGVS", "length": 1415, "header": "tr|A0A9J7F1I6-1|A0A9J7F1I6_CRIGR Isoform 1 of Cardiac-enriched FHL2-interacting protein OS=Cricetulus griseus OX=10029 GN=CUNH10orf71 PE=4 SV=1 CANONICAL=A0A9J7F1I6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F1I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6/entry", "sequence": { "sequence": "MQGNKKCTDGFSDTSSIGSVLDDADREVSNLTDRAFRSLCISESFHDSDLTLSPDITTQGFGTFHQGTVSHTNRKSGIWSQLPSQGTEHSGWAATFQQQPKYVQGEEKYPKNSPPTTPAQRRLEVPISGLRSSSKPISKVSSLIRSFDRTENQPCDSRPPPSKPPALKNPSKFAPPPEGGVNFCFDSAFLTVRRVPAEASNTHPSSHQPGRVSGEQESPKNPEVACHSSDSHLQTPDRMVDSFEPRFPSPPLKPAKAEPGRGKELAPRGTFLHSENSAFESWTSHQPKLPERKDIAETIPESKAPKHYEDMPLLKEPHPSESKVFPCQGPANCAQEETRSASGSQSTSGTWGARDPGSQVFPVEGNASQIDPQMKRSQPPWRKPKTGKGGTDGPHDTLEDKKQPNRRGLPLYSKLNPQGQLPENDVLDMPEDSNDHYSPPFNISELLTPIIPTKHVLESSDTQPVEIIPSPPGQLNGYQEKEPSEAQSRDSYKSKAPSLLFNLKDVRKRVKSTYSPLPLLKSFDEKTRGKLDGKQEPVSNGVTLPNGLEENPPTQLLKEMPADAPSILHSSTQKDPAINSSESFADNHLTLGSPSASSKTHFSVNGETTERSRNKKEDANGVSEQGPSESGWHPDAREHLPRKHLSLKLHNRESETGQATEKMKPHQLENGLSRSISQETEPEQEMGLQNLPLNQKFSPGPLSPEEEDVFYSDSQSDFTPCLQTKAKFSTSSSDQSFASFDDQHKMWFTEGPREDRKSRVSAGDDQKDEKETVMEKDEPQQCALSNGRTGVEEHGQEEIQRKAQGWSGGTPGKASVEEVNFRGSWVGVDKDTALPHAKDSAPLPACTNKHRLFPLKDNTLRATPVIKPIILPLLRTVSSEDSLVGGHKENELPRQQWGEDAGGLCASESQKMLTTPLSSNTQQTCVVCEVGEEDPAHTAAQAEISQQARKGSFSFLPLVEEEGKIKPPPDITGEAPARAKSGSVESGNLAAPQHIPTIALPPDDLEDPPHSLPLHTCWEEQGFQGHFLSAPRAGPSGRRLVPSEAATSPNPSSLGESSTCSPVASSVWEEASQAAGEQWLHQEPPGPRPWASPGRARLTRREDMTHGLTWEAEGSDPQLERLANLRTLSPRGTLLADTAEKPEPPALLERAAAGKPPAVPPKTEKALRRAKKLASKRRKSDQAPEKHTEAWEVKSFTEDTQGTELRPVSPGKGPRLRFPAVRSLPPPTHRHSVSCGWETEGRRPWGLQHPMPQSPYPATQKVLQDPQSGQYFVFDVPLQVKVKTFYDPETGKYVKVSVPSSEEASSEPPLQDALAAPYLLYPGFQPVPVTLMPLRCSSQLAAPTFLRQGSGHRPQSSQGARLQPPPEHLGESTQHASAPRPCGPPHSPEEEGAEAPSLSIISTDDLEDFATEGVS", "length": 1415, "header": "tr|A0A9J7F1I6-1|A0A9J7F1I6_CRIGR Isoform 1 of Cardiac-enriched FHL2-interacting protein OS=Cricetulus griseus OX=10029 GN=CUNH10orf71 PE=4 SV=1 CANONICAL=A0A9J7F1I6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 117, "start_aa": "Thr", "end_pos": 117, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr117", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 810, "start_aa": "Thr", "end_pos": 810, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr810", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770873", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770873", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z1D3-1", "protein_name": "Cardiac-enriched FHL2-interacting protein", "gene_name": "CEFIP", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMQGNKKCTDGFSDTSSIGSVLDEADREVSNLTDRAFRSLCISEDTSFHDSDLALSPDVTSQVSGTFHQETVGHANRKSGIWSQLPSQGTEHSGWAATFQQQPKYVQGEEKYPKTSPLPTPVQRRLEVPISGLRSSSKPISKVSSLIRSFDRTETQSCDSRPPPSKPPALKNPPKFAHPPESGVNFCFDSAFLTVRRVPAEVSNTHQGSHQSGRAPGEQESPKNPEIASHSSDSLLRTPDHVAGSFEPRYPSPPLKPATAEPGRGKEWIPRRTFLHSENSAFESWDTHQPKLRERKDIAETTPESKAPKHYEDMPLLKEPYPAESKGSPYQARANCAQEENRSPSGSQSTSGAWGARDPGSQLFPVEGNASQIDPQVKRSKAPWRKPKTGKGGTDGPPDALEDKKQPNRRGLPLYSKLNPQGQLPENGVLDMPEESNDHYNPPFNISKLLTPIISTKHVLETSDTQPVEISPSPPGQLNGYQEKESSEAQSRDSYKSKAPSLLFNLKDVRKRVKSTYSPLPLLKGFDEKTRGKLDSKQEPLSNGVTLPDGLEENPPTELLPDNVPGVLHSSTQKDPAINSRESFAVSHPTFSSPSASSQTHFCVNGEAAESNSNEKEEANGESELDPSKGGGHPDCRENLPRKHLSLKLFNRESEMGPAMAEMKPHQLENGLSRSVSQETETERETGFQSLPLNQKFSPGPLSPEEEDVFYSDSQSDFTPCRQTKAKFSTSSSDQSFASFEDQQKVCFTEGPQEDRKSHVSAGDKQRDETAVEKEESQQCASRNEHRGVDEQRQEEIQRKAQGVSGGRPRKASAEDLSARGSWMGADKDTAHTHAKDPTPLPASTNKHRLFPIKDNTLRATPVIKPIILPLLRTVSSEDSLSSGHQENELPKQLWGEDAGGLSASESQEMPNTPLSNNDVPGTQHRCMVCEDVQEDPVHTAAQDETSQQTRKGSFSFLPPVEEENRMKPSPDTAGEGLAQEKSKSADLGKLGVPQRIPTIALLPDDLEDSPPSLPQHTYWEEQGFKGHFLSAPRAGPSGRRLVPSEAETSPNPSSLGESSTCSPAASSIWEEASQAAGEHWQRQEPPGPNPWASPGPTGLTRREDMTHGLTWEAEGSDPSDFRALSPRGILLADAAEKPEPPALLEKAAGKPPAVPPKTEKALRRAKKLASKRRKSDQLLEKHTEAWEGKSFTEDTQGTERRPVSPGKGPRPRFPAIRSLPPPTHRHSVSCGWEPTGRRPWGPQSLTPLPPYPATQKVLQDPQSGQYFVFDVPLQVKIKTFYDPETGKYVKVSVPSSEEASSEPPLQDALAAPYLLYPGFRPVPVTSVMPLRCSSQLAAPTFLRQGSGHRPQSSQGSRLQPPPERLGESTQHASGQCPRGPSHSPEKESAEAPRLSIISTDDLEDFATEGVS", "length": 1412 }, "evidence": [ { "id": "A0A9J7F1I6", "url": "https://omabrowser.org/oma/group/A0A9J7F1I6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0RD54-1", "protein_name": "Cardiac-enriched FHL2-interacting protein", "gene_name": "CEFIP", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQGNKKCADGFSDTSSIGSVLDEADREVSNLTDRAFRSLCISEDTSFHDSDLALSPEITSQVSGTFHQETVSHANRKSGIWSQLPSQGTEHSGWAATFQQQPKYVQGEEKYPKNSPLPTPVQRRLEVPISGLRSSSKPISKVSSLIRSFDRTEAQPCDSRPPPSKPPALKNTPKFAHPPESGVNFCFDSAFLTVRRVPAGVSSTHQSSHQPCRAPGEPEPPTNPEIACHSSDSLLRAPDRVAGSCEPRFPSPSLKPPKAETGRGKEWISRGTFLHSENSAFESWDAHQPKLRERKDITETTPESKAPKHYEDMPLLKEPYPAESKLSPCQGRANCAQEENRSPSGIQSTSGAWGARDSGSQVFPVEGNASQIDPQVKRNQAPWRKPKTGKGGTDGPHDASEDKKQPNRKGLPLYSKLNPQGQLPENGVLDLPEESSDHYSSPFNISKLLTPIISTKHVLETSDTQPVETSPSPPGQLNGYQEKESSEAQSRDSYKSKAPSLLFNLKDVRKRVKSTYSPLPLLKGFDEKTRGKLDGKQEPLSNGVTLPNGLEENPPTAELVKETLDDAPSVLHSSTQKDPAMDSRESFADSHPTFSSPSASSKTHFSINGEAAERNSHEKEEANGESEQGLSEGGWHPDSRENLPRKHLSLKLCNRDSETGQATEKMKPRQLEKRLSRSISQETEPEREMGFQNLPVSQKFSPGPLSPEEEDVFYSDSQSDFTPCVQTKAKFSTSSSDQSFASFEDQQKMWFTEGPREDGKSHVSLGDNQKDEKETEVEKEEPQQCALHNGVEEHRQKETQRKAQGVLGGRPRKASAEEVSVRGSWTGADKDTALSHAKDPTPLPASTNKHRLFPIKDNTLRATPVIKPIILPLLRTVSSEDSLSGGHKENELPRQPWGEDAGGLGASESQEMRNTPLSNSTPSTEQKCVVYEGVEEDPVHTAAQDETSQQTRKGSFSFLPLVEEGGKTKPPPDTADERLAHEKSRSADSGKLEAPQHIPTIALHSDDLEDSPPSLPQHTCWEEQGFKSHFLSAPRAGPSGRRPVPSEAATSPNPSSLGGSSTCSPAASSIWEDASQAAGEHWQRQEPPGPGPWASPGPSGPTGLTRREDMTRGLTWEAEGSDPHLERLADFRTLSPRGIFLTGAAEKPEPSSLLEKAAGKPPAVPPKTEKALRRAKKLASKRRKSDQMSEKHTEAWEGKSFTEDAQGTEQRPVSPGKGPRPRFPEVRSLPPPTHRHSVSCGWEPAGRRPWGSQSLIPLPPYPATQKVLQDPQSGQYFVFDMPLQVKIKTFYDPETGKYVKVSVPSSEEDPSEPPLQDALTAPYLLYPGFQPVPVTSLMPLRCSSQLAAPTFLRQGSSHRPQSSQGARLQPPPERLGESAQHVSSAQRPRGPPLSPEEEGAEAPSLSIISTDDLEDFATEGVS", "length": 1422 }, "evidence": [ { "id": "A0A9J7F1I6", "url": "https://omabrowser.org/oma/group/A0A9J7F1I6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q711Q0-1", "protein_name": "Cardiac-enriched FHL2-interacting protein", "gene_name": "CEFIP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMQGNKKCTDAFSDSSSIGSVLDDADREVSSLTDRAFRSLCISEDTSFHDSYLAVSPDITRQVFGTFHQRTVGHTQRKSGIWSQLPSQGTEHSGWAATFQQLPKYVQGEEKYPKTSPPPTPVQRRLEVPVSGLRSSNKPVSKVSTLIKSFDRTESQRCESRPTASKPPALKNPPKFAPLPENSVNFCFDSAFLTVRRVPAEVSNTHQNSYQPGRKHGEQESSKNPEMACHGSSSFLPAANDTATLCESKFPSPHHKPVTGEPGRGKGTFLHSENSAFESWNAHQPKLLERKDTAGTVPESKAPKHYGDTTLLREPCPPERTVSPCQVQASCSQEENRLAAGALSTSIPWGCRDPGAQVFAVEGKAPSSQPDSQEKPAQPPWRKPKTGKKGKESLQDTLEEKTQTNQRGPPLYTKHNPQEQFSENNALDLPVEPNEHYDPPFNISKLLTPIIPSKHALDSADSQPAERTPSPPGQLNGYQEKEPSECQSRDSYKSKAPSLLFNLKDVRKRVKSTYSSSPLLKVLDEKTRGKVDGKQEPVSNGVILPNGLEESPPNELSKERPADDPTASHINPQKDPTADPSEPSADSYLTLSTAPTIAKAPFYVNGEAAERSSYENKEVEGELEMGPAGSSWCPDSREHRPRKHLSLRLCNRDPEPGGATEKMKTHQLENGLSRSVSQETEPEREAGLQNTHLNQKFFPGPLSPEEEDVFYSDSQSDFMPSLKGKAKFSTSSSDQSFASFDDQQKMWFTENQREDRRKDVSAGDSQKDEKENVMRKDELQYCALSNGHACLENRSQGEALQRERESVSGGRTRKASAEEANFRGSWIGENKGTTFSQAKDLTPSPSSASNRHMLFTIKDNTLRATPVIKPIMLPLLRTMSLEDSLSSGHKEEELPRPEWGEDPGFCAPENQDILGTSTPTNTRGTRVKCMANEVMEDPGQGSSMARMEASQPAPKGNFPSMPLVGEGDRVKAPPDAAPGLVASNCKSGSADSGKLAAPWHIPTIALPEGDIEDQPPPWQPENCWEEQTPGFKSHFLSTPRAGPPGRRLVPSERANSPNPGSPGESSACSPAASNIWEESSQAPGGPELLPEEPNQASPWASSSPARVTRREDLTHALVWEGGSDPLLELSAEDLRTLSPRGSLLDVATSPAGTSGRLELPAQLERTASKPPAVPPKTEKALRRAKKLASKRRKTDQAQEKHGESQEGKPCPEDLEQTQQRPLCPRERPRHNFPVVRSLPPPVHRHSVSGFSEPVGRRPGGPQSLTPLPAYPATQKVLQDPQSGEYFVFDLPLQVKIKTFYDPETGKYVKVSIPSSEGASPEPPPPDALAAPYVLYPGFQPVPVTALMPLRCSSQLSAPTFLRQGPRASAARARTQSVHESGLQLDPGPHGDCTPHSAGQRPHGPPQSPGEEGVEAPGLGIISTDDLEDFATEGIS", "length": 1435 }, "evidence": [ { "id": "A0A9J7F1I6", "url": "https://omabrowser.org/oma/group/A0A9J7F1I6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GL39-1", "protein_name": "Chromosome 10 open reading frame 71", "gene_name": "C10orf71", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQGNKKHTEGQSDSSSIGSLLDDTDREVSSLTDRAFKSLCVAELEDSYNEPDLAISPDFTRQFSAKFHPGALNHAIKLTASCNKLAARNNEHAIWASTFQQLPKCAPEEKKGAKNNTLGTERKKLNLPVPGPRNNKHVSKVSSLIKTFDKTAHQGSGDSLIASKQPIKNSFQRCKLNHGNDMACWDNTAILNIHKELSGFSEDSQGSHHVRGKHEPQKRPNKVDQSYCGSDGYYPVLIEMSKVAKSNFSRSSKNAFKNKYLKVNEPAKKGNFLHSENSAFESWNVHHKKLSEKEEFVDPVTKKESLTYLEEAPFIEGSHASELKLPPVKATVSKKQKKDFQMEPTPPETAFSIPLPAVFVPQGSLPSGTDFPAALPPVPPPRIHVHQDPPQPPPVPQPHPLPAPPHPPTPPIREAPPIPPLPLPAQLSPPAMSQTSISPQSMSHRMVSPSSPSQAPVPPPRGLPATLTKEEAISPPWRRLRATKGASERRQTSEEFPASNETCLLSEKASGAKPDQDVTPLIKQANSPGSVSPIFNITKLLTPIIPPKQEMDPMESEMIPLTPPPTESVSERDDEGSVYSDYRSRDSYKSKASSLLFNLKDVRKRVKTIYTPSPLLRVLENRNKARESIQENLQEKNNMKMAEKDELSDVTSAFESVHEKDNKTDLAGHFTDNYLTLSSPQTTADFLFHQSGDNLQQDHSTHEDLIKNTRGNEDHPLLGHQCEEPNLRKSLPYPAMKLYSRDNADTTHGQSLQNSSFRAEEKERQAGKPIENVAFKTLPRQLSPAEDVPYSNIQTNMAVTGHEAQGKRSPSSSEQSFVSTVEQPFQEEPLSPEQLMQKESLQESQRTKAEMSAESKISPEERGNVAGEDKLQYFACVSSGTGTAERKEGTVTENEQRSMMKEKLRQEKKEEANGMDSASDSIKDASTPRSEEPQTRPPSSSAKPCLFMIKDNTFRSPQVIRAVKMPLFRSFSLDDTVSSSYKEMEGRFAPPAAHSKQPPDVLHAPEQGWSASIRRGQQDVREGATDRGRDFSESGSTSATLDPSLLENTESFLLGKLMEENEETCALLNEVGKMNEESICRDKEKPQIRKARHSLTQPNLGLENDQAQNSPSYPTERKVNYFKNHHLFNRRGGSCAKKIITTETISPVTESIPEDRAYLSVSHEALEDMLDMEDTQVLLDSLECSAVTSPRSESTMHSLVSLPSEKPTISSLGETEGAINPALLNMALKSQADTSAEEILNSTQRHPLLDPAGEAERLGPGERGAGKPPAVPPKTEKALRRAKKLASRRKKIEEQQKKHQTEHTDAVGRKVSHSGRTLASPSPLEYSTHHSTFTPPETSIRRLSGASAVSPSPSLTQRKLLQDPDSGQYYVVDLPAEVNLKTFYDPETGKYVQVSVPSSEGNVYQPSSSEIRNSPYASYPRALPLPASSVAVLRSPSQLSESTWLMPAIQGEPAELPKDGQQDYRYTGAVDTQPCIEQASHSCSQDTEETHVCLGKDTSPTPNTALVSLTNLDNFSAEGVS", "length": 1521 }, "evidence": [ { "id": "A0A9J7F1I6", "url": "https://omabrowser.org/oma/group/A0A9J7F1I6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of calcineurin-NFAT signaling cascade", "id": "GO:0070886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F1I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1I6" }, { "id": "PF15232", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15232" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4585", "eco_id": "ECO_0000259", "start_pos": 1255, "end_pos": 1326, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 117, 810 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 30, "end_pos": 32 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 579, "end_pos": 581 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", 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"uniprot_ac": "A0A9J7F1L5", "uniprot_id": "A0A9J7F1L5_CRIGR", "mass": { "chemical_mass": 42117.0, "monoisotopic_mass": 42117.0 }, "refseq": { "ac": "XP_007630096", "name": "glycosyltransferase 8 domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007630096" }, "gene_names": [ { "name": "Glt8d1", "type": "recommended", "evidence": [ { "id": "A0A9J7F1L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5" } ] }, { "name": "Glt8d1", "type": "synonym", "evidence": [ { "id": "XP_007630096", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007630096" } ] } ], "protein_names": [ { "name": "Glycosyltransferase 8 domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7F1L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5/entry#names_and_taxonomy" } ] }, { "name": "glycosyltransferase 8 domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_007630096", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007630096" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613589.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007630096", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007630096" } ] }, { "annotation": "In vitro, catalyzes the transfer of a galactose residue from UDP-galactose onto GalNAc and GlcNAc structures.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5#function" }, { "database": "UniProtKB", "id": "ARBA00094223", "url": "https://www.uniprot.org/uniprotkb/ARBA00094223#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Glt8d1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5", "locus": {} } ], "crossref": [ { "id": "cd06429", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06429", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762757", "url": "https://www.ncbi.nlm.nih.gov/gene/100762757", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002495", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002495", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762757", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762757", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YKQHSNI", "url": "https://omabrowser.org/oma/group/YKQHSNI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F1L5", "url": "https://www.orthodb.org/?gene=A0A9J7F1L5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13778", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13778", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13778:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13778:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007630096", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007630096", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F1L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFRKVSIIIWVLAIVLFLLVLHHNFLSLSSLLRNEVSDSGILGLQPIDFVADIHQHPVNGRQEEIPVVIAASEDRLGGTIAAINSIHHNTRSNVIFYIVTLNSTEDHLRSWLNSVSLKSIRYKIVNFDTKLLEGKVKEDPDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSTSTKVIIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNVTNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHFKPWGRAASYADVWEKWYIPDPTGKFSLIRRHMDTSNIK", "length": 371, "header": "tr|A0A9J7F1L5-1|A0A9J7F1L5_CRIGR Isoform 1 of Glycosyltransferase 8 domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Glt8d1 PE=3 SV=1 CANONICAL=A0A9J7F1L5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F1L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5/entry", "sequence": { "sequence": "MSFRKVSIIIWVLAIVLFLLVLHHNFLSLSSLLRNEVSDSGILGLQPIDFVADIHQHPVNGRQEEIPVVIAASEDRLGGTIAAINSIHHNTRSNVIFYIVTLNSTEDHLRSWLNSVSLKSIRYKIVNFDTKLLEGKVKEDPDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSTSTKVIIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNVTNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHFKPWGRAASYADVWEKWYIPDPTGKFSLIRRHMDTSNIK", "length": 371, "header": "tr|A0A9J7F1L5-1|A0A9J7F1L5_CRIGR Isoform 1 of Glycosyltransferase 8 domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Glt8d1 PE=3 SV=1 CANONICAL=A0A9J7F1L5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762757", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762757", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AET2-1", "protein_name": "Glycosyltransferase 8 domain-containing protein 1", "gene_name": "GLT8D1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTLRKVNISILVAAVVIFLLVLHHNFLGLSDLLKRELTDSNPLGLQPIDFIPAAPQRLTDERNDREISVVIAASDERLGGAIAAMNSIYRNTRSNVVFYIVTLNDTVDHLRLWLRNTALKNLRYHILNFDPRVLEGKVQVDPQKADSIKPLTFARFYLPNLVPHAEKAIYVDDDIIVQDDILELYNTPLKPGHAAAFSDDCDSTTNKVAVRGAGNQYNYIGFLDYKKETIRKLAMKANTCSFNPGVFVANLTEWKLQNITKQLEKWMTLNVAEELYSRTLSGSITTPPLLIVFYKQHSSIDPLWNVRHLGSNAGKRYSPQFVKAAKLLHWNGHFKPWGRTASYAEVWEKWYVPDPTGKFSLIRRHPEAYEAK", "length": 372 }, "evidence": [ { "id": "A0A9J7F1L5", "url": "https://omabrowser.org/oma/group/A0A9J7F1L5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1SH98-1", "protein_name": "Glycosyltransferase 8 domain-containing protein 1", "gene_name": "GLT8D1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSFRKVNIIILVVAVALFLLVLHHNFLSLNSLLRNEVSDSGIVGLQPIDFIPNAPQHAVDGRQEEIPVVIAASEDRLGGAIAAINSIQHNTRSNVIFYIVTLNGTADHLRSWLSSSTLKSIRYKIVNFDSKLLEGKVKEDPDQGESIKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSASTKVVIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNITNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHFKPWGRTASYTDIWEKWYIPDPTGKFSLIRRHVEISNIK", "length": 371 }, "evidence": [ { "id": "A0A9J7F1L5", "url": "https://omabrowser.org/oma/group/A0A9J7F1L5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q0V7R1-1", "protein_name": "Probable galacturonosyltransferase-like 3", "gene_name": "GATL3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSLRLRLCLLLLLPITISCVTVTLTDLPAFREAPAFRNGRECSKTTWIPSDHEHNPSIIHIAMTLDAIYLRGSVAGVFSVLQHASCPENIVFHFIATHRRSADLRRIISSTFPYLTYHIYHFDPNLVRSKISSSIRRALDQPLNYARIYLADLLPIAVRRVIYFDSDLVVVDDVAKLWRIDLRRHVVGAPEYCHANFTNYFTSRFWSSQGYKSALKDRKPCYFNTGVMVIDLGKWRERRVTVKLETWMRIQKRHRIYELGSLPPFLLVFAGDVEPVEHRWNQHGLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFRYSPLISDS", "length": 345 }, "evidence": [ { "id": "A0A9J7F1L5", "url": "https://omabrowser.org/oma/group/A0A9J7F1L5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5E9E7-1", "protein_name": "Glycosyltransferase 8 domain-containing protein 1", "gene_name": "GLT8D1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFRKVNIVILVLAVALFLLVLHHNFLGLSSLLRNEVSDSGIVGLQPVDFIPNAPQRVVDGREEEIPVVIAASEDRLGGAIAAINSIQHNTRSNVIFYIVTLNGTADHLRSWLSSSNLKRIRYKIVNFDTKLLEGKVKEDPDQGESIKPLTFARFYLPILVPRAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSTSAKVVIRGAGNQYNYIGYLDYKKERIRELSMKASTCSFNPGVFVANLTEWRRQNITNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHFKPWGRTASYTDVWEKWYIPDPTGKFSLIRRHVEISNTK", "length": 371 }, "evidence": [ { "id": "A0A9J7F1L5", "url": "https://omabrowser.org/oma/group/A0A9J7F1L5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q68CQ7-1", "protein_name": "Glycosyltransferase 8 domain-containing protein 1", "gene_name": "GLT8D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFRKVNIIILVLAVALFLLVLHHNFLSLSSLLRNEVTDSGIVGPQPIDFVPNALRHAVDGRQEEIPVVIAASEDRLGGAIAAINSIQHNTRSNVIFYIVTLNNTADHLRSWLNSDSLKSIRYKIVNFDPKLLEGKVKEDPDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILALYNTALKPGHAAAFSEDCDSASTKVVIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNITNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHLKPWGRTASYTDVWEKWYIPDPTGKFNLIRRYTEISNIK", "length": 371 }, "evidence": [ { "id": "A0A9J7F1L5", "url": "https://omabrowser.org/oma/group/A0A9J7F1L5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NSU3-1", "protein_name": "Glycosyltransferase 8 domain-containing protein 1", "gene_name": "Glt8d1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFRKVNIIIWVLAVVLFLLVLHHNFLSLSSLLKNDISDSGIVGLQPIDFVASAHQHPVSERQEEIPVVIAASEDRLGGTIAAINSVHQNTRSNVMFYIVTFNSTADHLRSWLNSGSLKSIRYKIVNFDTKLLEGKVKQDPDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSASTKVIIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNVTNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHFKPWGRTASYADVWEKWYIPDPTGKFSLIRRHMDTSNIK", "length": 371 }, "evidence": [ { "id": "A0A9J7F1L5", "url": "https://omabrowser.org/oma/group/A0A9J7F1L5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "UDP-glycosyltransferase activity", "id": "GO:0008194", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008194", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1L5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", 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"MGNRAAGMMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESIKRSCPSWAGFSLAFSGLVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRECSMEGKVCVCCPPIPLHRPCPEWGQELKVALNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCVQIFSLDLVHMQLAPERSVSGPLGPLACTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRRDSQATLFDPQLHDGSCVCERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRSAAPPPARAPARRFSDSSGSLTPPGHRPPHRTPPPPLLLPRSHSDPGITTSSDTADFRDLYTKVLEEEAASISSADTGLCSEACLFRLARCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQLSRKSPDPTGTAAHGHKQVRRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSSRRLEHGVRPHSLSLNGGSRETGL", "length": 676, "header": "tr|A0A9J7F1W0-1|A0A9J7F1W0_CRIGR Isoform 1 of Protein FAM189B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam189b PE=3 SV=1 CANONICAL=A0A9J7F1W0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F1W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W0/entry", "sequence": { "sequence": "MGNRAAGMMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESIKRSCPSWAGFSLAFSGLVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRECSMEGKVCVCCPPIPLHRPCPEWGQELKVALNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCVQIFSLDLVHMQLAPERSVSGPLGPLACTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRRDSQATLFDPQLHDGSCVCERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRSAAPPPARAPARRFSDSSGSLTPPGHRPPHRTPPPPLLLPRSHSDPGITTSSDTADFRDLYTKVLEEEAASISSADTGLCSEACLFRLARCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQLSRKSPDPTGTAAHGHKQVRRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSSRRLEHGVRPHSLSLNGGSRETGL", "length": 676, "header": "tr|A0A9J7F1W0-1|A0A9J7F1W0_CRIGR Isoform 1 of Protein FAM189B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam189b PE=3 SV=1 CANONICAL=A0A9J7F1W0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K4/entry", "sequence": { "sequence": "MGNRAAGMMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESIKRSCPSWAGFSLAFSGLVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRECSMEGKVCVCCPPIPLHRPCPEWGQELKVALNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCVQIFSLDLVHMQLAPERSVSGPLGPLACTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRRDSQATLFDPQLHDGSCVCERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRSAAPPPARAPARRFSDSSGSLTPPGHRPPHRTPPPPLLLPRSHSDPGITTSSDTADFRDLYTKVLEEEAASISSADTARCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQLSRKSPDPTGTAAHGHKQVRRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSSRRLEHGVRPHSLSLNGGSRETGL", "length": 665, "header": "tr|A0A9J7F5K4-1|A0A9J7F5K4_CRIGR Computationally mapped isoform of Protein FAM189B isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam189b PE=3 SV=1 CANONICAL=A0A9J7F1W0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J506-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J506/entry", "sequence": { "sequence": "MISIAHPLSSLICPRAAEATLFDPQLHDGSCVCERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRSAAPPPARAPARRFSDSSGSLTPPGHRPPHRTPPPPLLLPRSHSDPGITTSSDTADFRDLYTKVLEEEAASISSADTGLCSEACLFRLARCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQLSRKSPDPTGTAAHGHKQVRRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSSRRLEHGVRPHSLSLNGGSRETGL", "length": 388, "header": "tr|A0A9J7J506-1|A0A9J7J506_CRIGR Computationally mapped isoform of Protein FAM189B isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam189b PE=3 SV=1 CANONICAL=A0A9J7F1W0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7T5/entry", "sequence": { "sequence": "MGNRAAGMMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESIKRSCPSWAGFSLAFSGLVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRECSMEGKVCVCCPPIPLHRPCPEWGQELKVALNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCVQIFSLDLVHMLAPERSVSGPLGPLACTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRRDSQATLFDPQLHDGSCVCERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRSAAPPPARAPARRFSDSSGSLTPPGHRPPHRTPPPPLLLPRSHSDPGITTSSDTADFRDLYTKVLEEEAASISSADTGLCSEACLFRLARCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQLSRKSPDPTGTAAHGHKQVRRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSSRRLEHGVRPHSLSLNGGSRETGL", "length": 675, "header": "tr|A0A9J7J7T5-1|A0A9J7J7T5_CRIGR Computationally mapped isoform of Protein FAM189B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam189b PE=3 SV=1 CANONICAL=A0A9J7F1W0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756337", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756337", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1W0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 }, { "start_pos": 277, "end_pos": 279 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F221-1", "uniprot_ac": "A0A9J7F221", "uniprot_id": "A0A9J7F221_CRIGR", "mass": { "chemical_mass": 48837.0, "monoisotopic_mass": 48837.0 }, "refseq": { "ac": "XP_027244911", "name": "LOW QUALITY PROTEIN: bystin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244911" }, "gene_names": [ { "name": "Bysl", "type": "recommended", "evidence": [ { "id": "A0A9J7F221", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F221" } ] }, { "name": "Bysl", "type": "synonym", "evidence": [ { "id": "XP_027244911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244911" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: bystin", "type": "synonym", "evidence": [ { "id": "XP_027244911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244911" }, { "id": "A0A9J7F221", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F221/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244911", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244911" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F221", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F221" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bysl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F221", "locus": {} } ], "crossref": [ { "id": "100765734", "url": "https://www.ncbi.nlm.nih.gov/gene/100765734", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007955", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007955", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765734", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765734", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F221", "url": "https://www.orthodb.org/?gene=A0A9J7F221", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12821", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12821", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12821:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12821:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244911", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244911", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F221", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F221", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F221-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F221-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKLKVARGAXEKHAPLAEQILAGKAVRAGTRDKRRGRGVEEEEEYVRPWLSRRILQQARQQQEELGTADQPAKPRERATRLGLGVPQDGSEDEDKEWPTLEKAAKMTGVDHQAEVVVDPEDEQVIEMFIKNPPTRHTLADIIMEKLTEKQTELVTVMSEVSGFPMPQLDPRVLEVYRGVREVLSKGRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFTSNLKEXMAQHFYNLVLHPRVWDGIAEYKQLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRQLPVLWHQCLLTLAQRYKADLATDQKEALLELLRLQPHPQLSPEIRRELQSAVPRDVEDVPVTME", "length": 429, "header": "tr|A0A9J7F221-1|A0A9J7F221_CRIGR Isoform 1 of LOW QUALITY PROTEIN: bystin OS=Cricetulus griseus OX=10029 GN=Bysl PE=3 SV=1 CANONICAL=A0A9J7F221-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F221-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F221/entry", "sequence": { "sequence": "MPKLKVARGAXEKHAPLAEQILAGKAVRAGTRDKRRGRGVEEEEEYVRPWLSRRILQQARQQQEELGTADQPAKPRERATRLGLGVPQDGSEDEDKEWPTLEKAAKMTGVDHQAEVVVDPEDEQVIEMFIKNPPTRHTLADIIMEKLTEKQTELVTVMSEVSGFPMPQLDPRVLEVYRGVREVLSKGRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFTSNLKEXMAQHFYNLVLHPRVWDGIAEYKQLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRQLPVLWHQCLLTLAQRYKADLATDQKEALLELLRLQPHPQLSPEIRRELQSAVPRDVEDVPVTME", "length": 429, "header": "tr|A0A9J7F221-1|A0A9J7F221_CRIGR Isoform 1 of LOW QUALITY PROTEIN: bystin OS=Cricetulus griseus OX=10029 GN=Bysl PE=3 SV=1 CANONICAL=A0A9J7F221-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245867" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F255", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F255" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772156", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F255", "locus": {} } ], "crossref": [ { "id": "A0A9J7F255", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F255", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18273", "database": "CDD", "categories": [ "Protein 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"MFKAASFNAVTYDDVHIDFTWDEWALLDPSQKSLYKNVMLETYRNLTAIGYKWEEHNIKELSQRPRRNGRHERCHTGEKPYECSQCGKAFAQQSNLQIHRRTHTREKPYECNYCGKAFVRYTHLQSHRRIHTGEKPYVCKQCGKAFSQQSHLQVHITTHTGVKPYECNQCGKAFACYSYLQSHKRIHTGEKLYECNQCEKAFARHSNLQRHKIIHTGVKPYECNQCGKGFSRQSYLQIHKRTHTGEKPYECNQCGKAFSRQSYLQIHKRTHTGEKPYGCKQCGKFFADYTYIKVHEKIHTGVKLYECNQCGKAFSQPSYLQVHKRVHTGEKPYECNYCGKTFACHRNLQRHKRIHTGQNPYECNQCGKTCSQESHLQVHKRTHQGEKPCECKQCGKAFAGPSYLQRHERIHIGE", "length": 414, "header": "tr|A0A9J7F266-1|A0A9J7F266_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC100764401 PE=3 SV=1 CANONICAL=A0A9J7F266-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F266-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F266/entry", "sequence": { "sequence": "MFKAASFNAVTYDDVHIDFTWDEWALLDPSQKSLYKNVMLETYRNLTAIGYKWEEHNIKELSQRPRRNGRHERCHTGEKPYECSQCGKAFAQQSNLQIHRRTHTREKPYECNYCGKAFVRYTHLQSHRRIHTGEKPYVCKQCGKAFSQQSHLQVHITTHTGVKPYECNQCGKAFACYSYLQSHKRIHTGEKLYECNQCEKAFARHSNLQRHKIIHTGVKPYECNQCGKGFSRQSYLQIHKRTHTGEKPYECNQCGKAFSRQSYLQIHKRTHTGEKPYGCKQCGKFFADYTYIKVHEKIHTGVKLYECNQCGKAFSQPSYLQVHKRVHTGEKPYECNYCGKTFACHRNLQRHKRIHTGQNPYECNQCGKTCSQESHLQVHKRTHQGEKPCECKQCGKAFAGPSYLQRHERIHIGE", "length": 414, "header": "tr|A0A9J7F266-1|A0A9J7F266_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC100764401 PE=3 SV=1 CANONICAL=A0A9J7F266-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247547" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2A4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Shox2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2A4", "locus": {} } ], "crossref": [ { "id": "A0A9J7F2A4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F2A4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, 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This record is derived from a genomic sequence (NW_003613875.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502137" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3F7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tinf2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7", "locus": {} } ], "crossref": [ { "id": "A0A9J7F3F7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F3F7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11657", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11657", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11741", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11741", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770148", "url": "https://www.ncbi.nlm.nih.gov/gene/100770148", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029400", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029400", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770148", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770148", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F2R9", "url": "https://www.orthodb.org/?gene=A0A9J7F2R9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F2V5", "url": "https://www.orthodb.org/?gene=A0A9J7F2V5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F3F7", "url": "https://www.orthodb.org/?gene=A0A9J7F3F7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J9J4", "url": "https://www.orthodb.org/?gene=A0A9J7J9J4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15512", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15512", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15512:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15512:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14973", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14973", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502137", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F2R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2R9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2R9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3F7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3F7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPPRVGPASLRFVAAASWLVVRQRRVEHFPKVLQFLQSLRAAVPGLVCYRHHERLCMGLKAKVVVELILQDRPWAQILNALNHHFPESRPVPLVPEVTKQDRKILEARENFCLLVKQLSEAEDLASSLQELEQDYGESFLVAMEKLLFEYLCQLEKALPTVRAQELQDVLNWIQPGSLVTNSVALRQYGMDMGWPLPESSDSGSVNLPEPMERSPHRQMKPALHSPLLNAKLDLHRPASREHPEHVAGNCFNLAPLGQRKSRSQWTSAKRCHKERPTVMLFPFRNMDLPAQNKSNPKHREEHGLDTAGSMGTKTVSTGKSKTPSQTLGKRTLEGPPDSDAAEQKENSVNCYMDPLRLSLSPPGAKKPMQSPSLCSSVITIGDLVLDSDEEENSQKEGEESLKNYQKTKFDTFIPMFCDYMPESCLFLPGKITNSKVL", "length": 439, "header": "tr|A0A9J7F3F7-1|A0A9J7F3F7_CRIGR Isoform 1 of TERF1-interacting nuclear factor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tinf2 PE=4 SV=1 CANONICAL=A0A9J7F3F7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F2R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2R9/entry", "sequence": { "sequence": "MAAPPRVGPASLRFVAAASWLVVRQRRVEHFPKVLQFLQSLRAAVPGLVCYRHHERLCMGLKAKVVVELILQDRPWAQILNALNHHFPESRPVPLVPEVTKQDRKILEARENFCLLVKQLSEAEDLASSLQELEQDYGESFLVAMEKLLFEYLCQLEKALPTVRAQELQDVLNWIQPGSLVTNSVALRQYGMDMGWPLPESSDSGSVNLPEPMERSPHRQMKPALHSPLLNAKLDLHRPASREHPEHVAGNCFNLAPLGQRKSRSQWTSAKRCHKERPTVMLFPFRNMDLPAQNKSNPKHREEHGLDTAGSMGTKTVSTGKSKTPSQTLGKRTLEGPPDSDAAEQKENSVNCYMDPLRLSLSPPGAKKPMQSPSLCSSVITIGDLVLDSDEEENSQKEGE", "length": 400, "header": "tr|A0A9J7F2R9-1|A0A9J7F3F7_CRIGR Computationally mapped isoform of TERF1-interacting nuclear factor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tinf2 PE=4 SV=1 CANONICAL=A0A9J7F3F7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V5/entry", "sequence": { "sequence": "MAAPPRVGPASLRFVAAASWLVVRQRRVEHFPKVLQFLQSLRAAVPGLVCYRHHERLCMGLKAKVVVELILQDRPWAQILNALNHHFPESRPVPLVPEVTKQDRKILEARENFCLLVKQLSEAEDLASSLQELEQDYGESFLVAMEKLLFEYLCQLEKALPTVRAQELQDVLNWIQPGSLVTNSVALRQYGMDMGWPLPESSDSGSVNLPEPMERSPHRQMKPALHSPLLNAKLDLHRPASREHPEHVAGNCFNLAPLGQRKSRSQWTSAKRCHKERPTVMLFPFRNMDLPAQNKSNPKHREEHGLDTAGSMGTKTVSTGKSKTPSQTLGKRTLEGPPDSDAAEQKENSVNCYMDPLRLSLSPPGAKKPMQSPSLCSSVITIGDLVLDSDEEENSQKEGEVITAQS", "length": 406, "header": "tr|A0A9J7F2V5-1|A0A9J7F2V5_CRIGR Computationally mapped isoform of TERF1-interacting nuclear factor 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tinf2 PE=4 SV=1 CANONICAL=A0A9J7F3F7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3F7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7/entry", "sequence": { "sequence": "MAAPPRVGPASLRFVAAASWLVVRQRRVEHFPKVLQFLQSLRAAVPGLVCYRHHERLCMGLKAKVVVELILQDRPWAQILNALNHHFPESRPVPLVPEVTKQDRKILEARENFCLLVKQLSEAEDLASSLQELEQDYGESFLVAMEKLLFEYLCQLEKALPTVRAQELQDVLNWIQPGSLVTNSVALRQYGMDMGWPLPESSDSGSVNLPEPMERSPHRQMKPALHSPLLNAKLDLHRPASREHPEHVAGNCFNLAPLGQRKSRSQWTSAKRCHKERPTVMLFPFRNMDLPAQNKSNPKHREEHGLDTAGSMGTKTVSTGKSKTPSQTLGKRTLEGPPDSDAAEQKENSVNCYMDPLRLSLSPPGAKKPMQSPSLCSSVITIGDLVLDSDEEENSQKEGEESLKNYQKTKFDTFIPMFCDYMPESCLFLPGKITNSKVL", "length": 439, "header": "tr|A0A9J7F3F7-1|A0A9J7F3F7_CRIGR Isoform 1 of TERF1-interacting nuclear factor 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tinf2 PE=4 SV=1 CANONICAL=A0A9J7F3F7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J4/entry", "sequence": { "sequence": "MAAPPRVGPASLRFVAAASWLVVRQRRVEHFPKVLQFLQSLRAAVPGLVCYRHHERLCMGLKAKVVVELILQDRPWAQILNALNHHFPESRPVPLVPEVTKQDRKILEARENFCLLVKQLSEAEDLASSLQELEQDYGESFLVAMEKLLFEYLCQLEKALPTVRAQELQDVLNWIQPGSLVTNSVALRQYGMDMGWPLPESSDSGSVNLPEPMERSPHRQMKPALHSPLLNAKLDLHRPASREHPEHVAGNCFNLAPLGQRKSRSQWTSAKRCHKERPTVMLFPFRNMDLPAQNKSNPKHREEHGLDTAGSMGTKTVSTGKSKTPSQTLGKRTLEGPPDSDAAEQKENSVNCYMDPLRLSLSPPGAKKPMQSPSLCSSVITIGDLVLDSDEEENSQKEGEELCMLPSL", "length": 408, "header": "tr|A0A9J7J9J4-1|A0A9J7J9J4_CRIGR Computationally mapped isoform of TERF1-interacting nuclear factor 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tinf2 PE=4 SV=1 CANONICAL=A0A9J7F3F7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2R9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2R9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770148", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770148", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of telomere maintenance via telomere lengthening", "id": "GO:1904356", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904356", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3F7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7" } ], "pmid": "" }, { "name": "telomere capping", "id": "GO:0016233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016233", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3F7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "telomeric DNA binding", "id": "GO:0042162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042162", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3F7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "shelterin complex", "id": "GO:0070187", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070187", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3F7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F3F7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F7" }, { "id": "PF14973", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14973" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TERF1-interacting nuclear factor 2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 167, "start_aa": "Trp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 294, "end_pos": 296 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F2T4-1", "uniprot_ac": "A0A9J7F2T4", "uniprot_id": "A0A9J7F2T4_CRIGR", "mass": { "chemical_mass": 16895.0, "monoisotopic_mass": 16895.0 }, "refseq": { "ac": "XP_007646356", "name": "LOW QUALITY PROTEIN: 40S ribosomal protein S19-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646356" }, "gene_names": [ { "name": "LOC100759160", "type": "recommended", "evidence": [ { "id": "A0A9J7F2T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2T4" } ] }, { "name": "LOC100759160", "type": "synonym", "evidence": [ { "id": "XP_007646356", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646356" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: 40S ribosomal protein S19-like", "type": "synonym", "evidence": [ { "id": "XP_007646356", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646356" }, { "id": "A0A9J7F2T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2T4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614406.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646356", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646356" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2T4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759160", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2T4", "locus": {} } ], "crossref": [ { "id": "100759160", "url": "https://www.ncbi.nlm.nih.gov/gene/100759160", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759160", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759160", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F2T4", "url": "https://www.orthodb.org/?gene=A0A9J7F2T4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11710:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11710:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007646356", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646356", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F2T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2T4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPGVTVKDTNQQEYFRALVAFLKKSPKLKVPQWVDTVKLAKHKELAPYDENWYYTXAASTARHLYXVGSMTNIYRGWQRNGVRTSHFSRGSKSVAHSVHQALEGLKMVEKKQDGCRKLTPQQQRDLDRLAGQVVATKKEAVEQRMLG", "length": 148, "header": "tr|A0A9J7F2T4-1|A0A9J7F2T4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 40S ribosomal protein S19-like OS=Cricetulus griseus OX=10029 GN=LOC100759160 PE=3 SV=1 CANONICAL=A0A9J7F2T4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F2T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2T4/entry", "sequence": { "sequence": "MVPGVTVKDTNQQEYFRALVAFLKKSPKLKVPQWVDTVKLAKHKELAPYDENWYYTXAASTARHLYXVGSMTNIYRGWQRNGVRTSHFSRGSKSVAHSVHQALEGLKMVEKKQDGCRKLTPQQQRDLDRLAGQVVATKKEAVEQRMLG", "length": 148, "header": "tr|A0A9J7F2T4-1|A0A9J7F2T4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 40S ribosomal protein S19-like OS=Cricetulus griseus OX=10029 GN=LOC100759160 PE=3 SV=1 CANONICAL=A0A9J7F2T4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615675.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003513017.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513017", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513017" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2V3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tafa3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V3", "locus": {} } ], "crossref": [ { "id": "A0A9J7F2V3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F2V3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751401", "url": "https://www.ncbi.nlm.nih.gov/gene/100751401", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751401", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751401", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RWWCHME", "url": "https://omabrowser.org/oma/group/RWWCHME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F2V3", "url": "https://www.orthodb.org/?gene=A0A9J7F2V3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31770", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31770", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31770:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31770:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513017", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513017", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F2V3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSERTSSSWSPGSWVLALCLAWLWTRLASASLQPPTATVLVKQGTCEVIAAHRCCNRNRIEERSQTVKCSCLSGQVAGTTRAKPSCVDASIVLQKWWCQMEPCLLGEECKVLPDLSGWSCSSGHKVKTTKVTR", "length": 133, "header": "tr|A0A9J7F2V3-1|A0A9J7F2V3_CRIGR Isoform 1 of Chemokine-like protein TAFA-3 OS=Cricetulus griseus OX=10029 GN=Tafa3 PE=3 SV=1 CANONICAL=A0A9J7F2V3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F2V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V3/entry", "sequence": { "sequence": "MSERTSSSWSPGSWVLALCLAWLWTRLASASLQPPTATVLVKQGTCEVIAAHRCCNRNRIEERSQTVKCSCLSGQVAGTTRAKPSCVDASIVLQKWWCQMEPCLLGEECKVLPDLSGWSCSSGHKVKTTKVTR", "length": 133, "header": "tr|A0A9J7F2V3-1|A0A9J7F2V3_CRIGR Isoform 1 of Chemokine-like protein TAFA-3 OS=Cricetulus griseus OX=10029 GN=Tafa3 PE=3 SV=1 CANONICAL=A0A9J7F2V3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2V3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2V3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751401", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751401", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A867-1", "protein_name": "TAFA chemokine like family member 3", "gene_name": "FAM19A3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSERDVQSLSRRVLVLTLCLTTLWGRLTLASTHHRSHSAHVEPGTCEVIAAHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVLQKWWCQMEPCLAGEECKVLPDLSGWSCSSGNKVKTTKVTR", "length": 133 }, "evidence": [ { "id": "A0A9J7F2V3", "url": "https://omabrowser.org/oma/group/A0A9J7F2V3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": 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"UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2" } ] }, { "name": "Nwd2", "type": "synonym", "evidence": [ { "id": "XP_027246502", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246502" } ] } ], "protein_names": [ { "name": "NACHT and WD repeat domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "A0A9J7F2Z2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2/entry#names_and_taxonomy" } ] }, { "name": "Leucine-rich repeat and WD repeat-containing protein KIAA1239", "type": "synonym", "evidence": [ { "id": "A0A9J7F2Z2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2/entry#names_and_taxonomy" } ] }, { "name": "NACHT and WD repeat domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027246502", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246502" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246502" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nwd2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2", "locus": {} } ], "crossref": [ { "id": "100765896", "url": "https://www.ncbi.nlm.nih.gov/gene/100765896", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056534", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056534", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057588", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057588", "database": "InterPro", 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"MWPAGAGTKLPCPRDSALKRAAFSGNLTALPSHLVPAGRSVRVFISANPEDTGAERQALRETVYPKLREFCRENYGLEFQVIDLYWGVDEDEWDSPELQKMRMKLLEECLKTSAGPCFVGLLGEKYGNIRIPGEVEASEFEMILDAAVEAKLDTKLLEDWYCRDENSVPAAYYLRPRLEVPRSNKNSMQPSAGPENERPWQEISDEIKTIFKASVKLLHEQGKMKHSQAKRYLFSAMEDEFDFALGKQTPAFLKKCVCYIRKIANIERFVKIPEMGKYMDITGTEPRIIRDPEAQEKLIKLRDEFIPTIVASSNLRVYTSVTHCDMKLGYSQEIENHYIEGLGKQFYEDMIDIIQATVQQNFDTETDTLYDEILQHSSLCKTYASFYEYKCESLNILHKYILPSKTGHINPLVVYGGPCTGKTLLLAEAAKKAYGWLHEDTGPDSDPVVIVRFLGTTDMSIDLRTLLLSVCEQMAVNYRCLVQSYPKKIHDLRDLFINLLNESSLQRPLVIIFDALEQLSESDDARKLWWLPAHLPRFVRIVLSTLPNKHGILQKLRCLIHEEDNYIELIPQDRKMCSQVLKHQLLRVKRKVTSGQQIYVNNAFSKCTLPMFVNLTFREVRHWRSHKDVDESSLCVTVHESIEQLFWSLEKKCGQKLVSRALGYITMAKMGLSEMELEDVLALDNSVMNELNENTRPSNPLRVPYLYIARLKEGLNGYLIERHVKNVTLLVWANRHLQLIAQKLYLQEDRNLREMHTILADYFLGVWSGGRRKAFCLEDPYLNGCLDLENRSLLEEEKHFMEQASFDRQAPDQPWVFQCNPLEPDIFFVNHRKMSELLYHLTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKVLADIELAYNYSQEKELKFLASTLRGIRNKVITFPGSLSAELQQRLLPVVSSLPKLRHLLLECDKDGPKYCSIVPLHSSMDVTYSPERLPLAASHLHVTEILPTCNPSTVLTALENGSISTWDVETRQLLRQITTAQSVILGMKLTSDEKYLVVATTNNTLLIYDNVNSCLLSEVEIKGTKHGSGSTYINGFTLSVKHALAWLEASKDVTVIDLLYGWPLYQFHCWYEVTCVQCSLDGVYAFCGQYLNNTTIFHLGSGEKLCTVTSEFSGGFVKFLLILDTAQEMVMVDSEGSLSVWNTEDISNPQLTEDFDCRKEDSEVVSIELSEDQSAILICKALSIELLDTGMWKVAEKFRARHNERFISAVLSKNGDCIIATMENTPAVFFWRRDTGQCMASLQEISGTIVKFVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLVLPARGEIIYSLDGSDCVHKWNFSSGFIEAVFKHEGIVEHCVLTSTGDIMVTSDDKSSQYVWHTSSGENLFRINGQRISQLLITHNDQFVVSLCEENASRVWRLATGHRVCNILTTLQNAFITSANTFVVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDIIVFITSAETVNIWSLTDEVICRRVQLPSNFLKNLEDFEISPNGKLGIISRGDENINVLDLHSGKLRVVHASGVIWRQRLSRDGRYLVYICFRNGEEEEENDAISSLIVMRLADGKNIGACSLYKTPTFLALSQRHLNIIVGFEDGSIGIYTVVDRVDAALKIKIATSNSRQIFNNATQTSRPKSNSYSFKVSVDCLWRESTEVFARDSPITVSDSSESNEATPSKKHNSCYDRVCAALESRSHSYTPDN", 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"length": 1742, "header": "tr|A0A9J7F2Z2-1|A0A9J7F2Z2_CRIGR Isoform 1 of NACHT and WD repeat domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Nwd2 PE=4 SV=1 CANONICAL=A0A9J7F2Z2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1715, "start_aa": "Thr", "end_pos": 1715, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1715", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765896", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765896", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1030, "end_pos": 1032, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1120, "end_pos": 1122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1121, "end_pos": 1123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1344, "end_pos": 1346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1419, "end_pos": 1421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1668, "end_pos": 1670, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 614, "end_pos": 616, "annotation": "n_glycosylation_sequon" }, { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" }, { "start_pos": 790, "end_pos": 792, "annotation": "n_glycosylation_sequon" }, { "start_pos": 857, "end_pos": 859, "annotation": "n_glycosylation_sequon" }, { "start_pos": 882, "end_pos": 884, "annotation": "n_glycosylation_sequon" }, { "start_pos": 988, "end_pos": 990, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F2Z2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z2" }, { "id": "PF25469", "database": 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"MIASRAPGPQSFGLFFSLTPHHLFLFLVGTLANKLNVPQVLLPFSREPGRVPFLLEAQRGCYTWHSTHHDAVTIEPLYKNGTSCSQRAVLVAESTQPIRLSSIILAREVVTDHELRCDVKVDVIDSIEIVSRTRELYVDDAPLELMVRALDAKGNTFSTLAGMVFEWSIAQDNESGREELSSKIRILKFSEAEYSPPDYIAEMEKGEQQGDVILVSGMRTGAAVVKVRIYEPFYKKVSAALIRLLVLENIFLIPSHDIYLLVGAYIKYQVAKMVQGRMTEVKFPLEHYTLELQDHKCANTELPSDIVALLDETTATVTAFQLGQTNLVFVHKNVHMRCVSGLPNSTIYVVEPGYLGFTIHPGSRWSLEVGQVYIITVDVFDKSSTRVHISDNLKITFQFLMEYFEVQLSSSNGSYHVVKTLRDGVVVINATLTSSLQESSGAQPTKSEINHQQEVKIYFPIQLKPSFLAFPYHPLGILNRYKVQVEGGSGNFTWTSSNETVAMVTTKGVVAAGQVRGNSTVMARDVQNPFRYGEIKIYVMKLNKMELLPFQADAEIGQIIEVPIAMYHVNTETKEAMAFTDCSHLPLDLSSDKQGVFTLVKEGIKKPGPTHCSSVHIAATSPGHTVVTVSVTGHEEHVGSSATFAAYAPLKALNPVEVALVTWQSVKEMVFEGGPHPWILEPSRFFLEMSVEKPKGICITEARLPAKRKQNQYVYRVLCLDLGEQVLTLQIGNHPGVLNPSPSVETVQVHFICAHPASMLVTPVYRVRAGTQPCPLPQYNKQLIPVSSLRDSVLELAVFDQHGRKFDNFSSLMLEWKSSNETLAHFEESKSMEMVAKDDGSGQTQLHGHQILKVHQMKGTVLIAVNFVGYSGNKSPVEISNSPRSAVVELLLVEDVTVQPENATIYNHPDVKEIFHLVEGSGYFLVNSSEQDMVTITYMEAESSVQVVPLHPGFLTLEVYDLCLAFLGPAMARLRVSDIQEVELDLIDKVEIGKTVLVAVRVLGSSKHPFRNKYFRNMDVRLQLASAIVTLRLMEDQDEYSENYMLRAVTIGQTTLVAIATDRMGRKFTSTPRHIEVFPPFRLVPEKMTLITTNLMQIMSEGGPQPQSIIHFSISNQTVAAVNRRGQVTGKAVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATEMPVYVMGVTSTQTPFSFSNANPSLTFHWSMSKRDVLDLVPRHSEVFLQLPAENNFAMVVHTKVAGRTTIKVTVRSENSSFGHFEGSVMELSDEIQILVFEKLQLFYEGCQPEQILMPMNSQLKLHTNREGAAFVSSRVLKCFPNSSVIEEDSQGLLRSGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTYLRMSSYPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFHTHNTRLYMALNRDDLLLIGPGNRNYTYMAQAVNRGVTVVGLWDQRHPGMADYIPVAVEHAIEPDTKLTFVGDVICFSTHLVNQHGEPGMWMISTNNVIQTDTVTGVGVARSPGTATIFHDIPGVVKTFREVVVNASSRLTLSYDLKTYLTNIPNATVFKLFISTGRNDVNLKGSCTSSQASAVKTVLLPETLLLCHVQFSNTLLDVPASKVFLIRSEFSMERGVYVCLIKVRQKSEELRQILSVADTSVYGWATLVSGRSKNGMQRILIPFIPGFYMNQSELVLSHKDIGDLRVLGVERVLESLEVFSSSPFLAVSGHKHSILTTGMAIYLVRVVNFTAFQMSSPVFINVSCVLTSQHEAVLVRAKDASGSDHCEESGVLKNLVGSYQILLFTLFAVLASTAFIFLAYNAFLNKIQTVPVVYVPTIGTTQPGSYTTCSPPHFLNPQPPLVQSRLQHWLWSIKH", "length": 1880, "header": "tr|A0A9J7F2Z3-1|A0A9J7F2Z3_CRIGR Isoform 1 of Nuclear pore membrane glycoprotein 210-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Nup210l PE=3 SV=1 CANONICAL=A0A9J7F2Z3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F2Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z3/entry", "sequence": { "sequence": "MIASRAPGPQSFGLFFSLTPHHLFLFLVGTLANKLNVPQVLLPFSREPGRVPFLLEAQRGCYTWHSTHHDAVTIEPLYKNGTSCSQRAVLVAESTQPIRLSSIILAREVVTDHELRCDVKVDVIDSIEIVSRTRELYVDDAPLELMVRALDAKGNTFSTLAGMVFEWSIAQDNESGREELSSKIRILKFSEAEYSPPDYIAEMEKGEQQGDVILVSGMRTGAAVVKVRIYEPFYKKVSAALIRLLVLENIFLIPSHDIYLLVGAYIKYQVAKMVQGRMTEVKFPLEHYTLELQDHKCANTELPSDIVALLDETTATVTAFQLGQTNLVFVHKNVHMRCVSGLPNSTIYVVEPGYLGFTIHPGSRWSLEVGQVYIITVDVFDKSSTRVHISDNLKITFQFLMEYFEVQLSSSNGSYHVVKTLRDGVVVINATLTSSLQESSGAQPTKSEINHQQEVKIYFPIQLKPSFLAFPYHPLGILNRYKVQVEGGSGNFTWTSSNETVAMVTTKGVVAAGQVRGNSTVMARDVQNPFRYGEIKIYVMKLNKMELLPFQADAEIGQIIEVPIAMYHVNTETKEAMAFTDCSHLPLDLSSDKQGVFTLVKEGIKKPGPTHCSSVHIAATSPGHTVVTVSVTGHEEHVGSSATFAAYAPLKALNPVEVALVTWQSVKEMVFEGGPHPWILEPSRFFLEMSVEKPKGICITEARLPAKRKQNQYVYRVLCLDLGEQVLTLQIGNHPGVLNPSPSVETVQVHFICAHPASMLVTPVYRVRAGTQPCPLPQYNKQLIPVSSLRDSVLELAVFDQHGRKFDNFSSLMLEWKSSNETLAHFEESKSMEMVAKDDGSGQTQLHGHQILKVHQMKGTVLIAVNFVGYSGNKSPVEISNSPRSAVVELLLVEDVTVQPENATIYNHPDVKEIFHLVEGSGYFLVNSSEQDMVTITYMEAESSVQVVPLHPGFLTLEVYDLCLAFLGPAMARLRVSDIQEVELDLIDKVEIGKTVLVAVRVLGSSKHPFRNKYFRNMDVRLQLASAIVTLRLMEDQDEYSENYMLRAVTIGQTTLVAIATDRMGRKFTSTPRHIEVFPPFRLVPEKMTLITTNLMQIMSEGGPQPQSIIHFSISNQTVAAVNRRGQVTGKAVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATEMPVYVMGVTSTQTPFSFSNANPSLTFHWSMSKRDVLDLVPRHSEVFLQLPAENNFAMVVHTKVAGRTTIKVTVRSENSSFGHFEGSVMELSDEIQILVFEKLQLFYEGCQPEQILMPMNSQLKLHTNREGAAFVSSRVLKCFPNSSVIEEDSQGLLRSGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTYLRMSSYPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFHTHNTRLYMALNRDDLLLIGPGNRNYTYMAQAVNRGVTVVGLWDQRHPGMADYIPVAVEHAIEPDTKLTFVGDVICFSTHLVNQHGEPGMWMISTNNVIQTDTVTGVGVARSPGTATIFHDIPGVVKTFREVVVNASSRLTLSYDLKTYLTNIPNATVFKLFISTGRNDVNLKGSCTSSQASAVKTVLLPETLLLCHVQFSNTLLDVPASKVFLIRSEFSMERGVYVCLIKVRQKSEELRQILSVADTSVYGWATLVSGRSKNGMQRILIPFIPGFYMNQSELVLSHKDIGDLRVLGVERVLESLEVFSSSPFLAVSGHKHSILTTGMAIYLVRVVNFTAFQMSSPVFINVSCVLTSQHEAVLVRAKDASGSDHCEESGVLKNLVGSYQILLFTLFAVLASTAFIFLAYNAFLNKIQTVPVVYVPTIGTTQPGSYTTCSPPHFLNPQPPLVQSRLQHWLWSIKH", "length": 1880, "header": "tr|A0A9J7F2Z3-1|A0A9J7F2Z3_CRIGR Isoform 1 of Nuclear pore membrane glycoprotein 210-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Nup210l PE=3 SV=1 CANONICAL=A0A9J7F2Z3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H993-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H993/entry", "sequence": { "sequence": "MIASRAPGPQSFGLFFSLTPHHLFLFLVGTLANKLNVPQVLLPFSREPGRVPFLLEAQRGCYTWHSTHHDAVTIEPLYKNGTSCSQRAVLVAESTQPIRLSSIILAREVVTDHELRCDVKVDVIDSIEIVSRTRELYVDDAPLELMVRALDAKGNTFSTLAGMVFEWSIAQDNESGREELSSKIRILKFSEAEYSPPDYIAEMEKGEQQGDVILVSGMRTGAAVVKVRIYEPFYKKVSAALIRLLVLENIFLIPSHDIYLLVGAYIKYQVAKMVQGRMTEVKFPLEHYTLELQDHKCANTELPSDIVALLDETTATVTAFQLGQTNLVFVHKNVHMRCVSGLPNSTIYVVEPGYLGFTIHPGSRWSLEVGQVYIITVDVFDKSSTRVHISDNLKITFQFLMEYFEVQLSSSNGSYHVVKTLRDGVVVINATLTSSLQESSGAQPTKSEINHQQEVKIYFPIQLKPSFLAFPYHPLGILNRYKVQVEGGSGNFTWTSSNETVAMVTTKGVVAAGQVRGNSTVMARDVQNPFRYGEIKIYVMKLNKMELLPFQADAEIGQIIEVPIAMYHVNTETKEAMAFTDCSHLPLDLSSDKQGVFTLVKEGIKKPGPTHCSSVHIAATSPGHTVVTVSVTGHEEHVGSSATFAAYAPLKALNPVEVALVTWQSVKEMVFEGGPHPWILEPSRFFLEMSVEKPKGICITEARLPAKRKQNQYVYRVLCLDLGEQVLTLQIGNHPGVLNPSPSVETVQVHFICAHPASMLVTPVYRVRAGTQPCPLPQYNKQLIPVSSLRDSVLELAVFDQHGRKFDNFSSLMLEWKSSNETLAHFEESKSMEMVAKDDGSGQTQLHGHQILKVHQMKGTVLIAVNFVGYSGNKSPVEISNSPRSAVVELLLVEDVTVQPENATIYNHPDVKEIFHLVEGSGYFLVNSSEQDMVTITYMEAESSVQVVPLHPGFLTLEVYDLCLAFLGPAMARLRVSDIQEVELDLIDKVEIGKTVLVAVRVLGSSKHPFRNKYFRNMDVRLQLASAIVTLRLMEDQDEYSENYMLRAVTIGQTTLVAIATDRMGRKFTSTPRHIEVFPPFRLVPEKMTLITTNLMQIMSEGGPQPQSIIHFSISNQTVAAVNRRGQVTGKAVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATEMPVYVMGVTSTQTPFSFSNANPSLTFHWSMSKRDVLDLVPRHSEVFLQLPAENNFAMVVHTKVAGRTTIKVTVRSENSSFGHFEGSVMELSDEIQILVFEKLQLFYEGCQPEQILMPMNSQLKLHTNREGAAFVSSRVLKCFPNSSVIEEDSQGLLRSGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTYLRMSSYPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFHTHNTRLYMALNRDDLLLIGPGNRNYTYMAQAVNRGVTVVGLWDQRHPGMADYIPVAVEHAIEPDTKLTFVGDVICFSTHLVNQHGEPGMWMISTNNVIQTDTVTGVGVARSPGTATIFHDIPGVVKTFREVVVNASSRLTLSYDLKTYLTNIPNATVFKLFISTGRNDVNLKGSCTSSQASAVKTVLLPETLLLCHVQFSNTLLDVPASKVFLIRSEFSMERDHCEESGVLKNLVGSYQILLFTLFAVLASTAFIFLAYNAFLNKIQTVPVVYVPTIGTTQPGSYTTCSPPHFLNPQPPLVQSRLQHWLWSIKH", "length": 1731, "header": "tr|A0A9J7H993-1|A0A9J7H993_CRIGR Computationally mapped isoform of Nuclear pore membrane glycoprotein 210-like isoform X2 OS=Cricetulus griseus OX=10029 GN=Nup210l PE=3 SV=1 CANONICAL=A0A9J7F2Z3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765137", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765137", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z8Z6-1", "protein_name": "Nucleoporin 210-like", "gene_name": "Nup210l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIAFGAPRPRGFRLLFSLTPHHFFLFLIGTLANKLNVPQVLLPFSREPGRVPFLLEAQRGCYIWHSTQHDAVAIQPLYENGTSCSQRAVLVAESTQPIRLSSIILAREVVTDHELRCDVKVDVIDNIEIVSRTRELYVDDAPLELMVRALDSKGNTFSTLAGMVFEWSIAQDKESSREELSSKIRILNYSEAEYSPPDYITEMEKEEKQGDVILVSGMRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDTYLLVGAYMKYRVAKMVQGRMTEGKFPLEHYTLELQDHRLIDVGLRSGTVALLDEKTAMVTALQLGQTNLVFVHKNVHMRSVSGLPNSTIYVVEPGFLGFTIHPGGRWSLEVGQVYIITVEVFDKSSTRVYISDNLKITFQFSKEYFEEQLSTLNGSYHMVKALKDGAVVINASLTSSLWESNSSQPKTYQINHQQEVKIYFPIQLKPSFLAFPHYPLGISNRFTVQVEGGSGNFTWSSSNETVAMVTTKGVVTAGQVRGNSTILARDVQNPFRSGNIKVYVMKLNKMELLPFQADVEIGQIIEVPIAMYHVNTETKEAIAFTDCSHLPLDLNSDKQGVFTLFKEGIQKPGPMHCSSVHIAATSPGHTLVTISVTGHEEHVWSSATFAAYEPLKALNPVEVALVTWHSVKEMVFEGGPHPWILEPSRFFLELSMEKAEAIRITEVRLPAKRKQNQYVYRVLCLELGEQVLTLRIGNHPGVLNPSPSVEKVQVRFICAHPASMLVTPMYKVPAGTQPCPLPQYNKQLIPVSSVRDTVLELAVFDQHGRKFDNFSSLMLEWKSSNETLARFESPKSVEMVARDDGSGQTRLHGHQILEVHQIKGTVLIGVNFAGYSGKRSPKGISNSPRSAGVELLLVEDVTVQPENATIYNHPDVKEVFNLVEGSGYFLVNSSEQDIVTTTYMESEGSVQLVPAHPGFLTLKVYDLCLAYLGPAMAQVRVSDIQEVELDLIDKVEIGKTVLVVVRVLGSSKHPFRNKYFRNMDVRLQLASAIVTLRLTEDQDEYSENYMLRAVTVGQTTLVAIATDRMGRKFTSAPRHIEVFPPFRLVPEKMTLIITNMMQIMSEGGPQPQSTIHFSISNQTVAAVNRRGQVTAKVVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLQAVRILAAATRLVTATEMPVYVMGVTSTQTPFSFSNASPMLTFHWSMSKRDVLDLVPRHSEVFLQLPAENNFAMVVHTKAAGRTTIKVTVRSKNSSFGQFERNVLELSDEIQILVFEKLQLFYADCQREQILMPMNSQLKLHTNREGAASVSSRVLKCFPNSSVIEEDGEGLLRSGSIAGTAVLEVTSIEPFGVNQTTVTGVQATPVTYLRLSSYPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFHTHNTRLYMALNRDDLLLIGPGNKNYTYMAQAVNKGVTVVGLWDQRHPGMADYIPVAVEHAIEPDTKLISVGDVICFSTQLVSQHGEPGVWMISTNNIIQTDTVTGVGVARSPGTATIFHDIPGVVKTFREVVVNASSRLTLSYDLKTYLTNTPNATVFKLFISTGRSVNLKGSCTPSQALAVEKVLLPETLMLCHVQFSNTLLDIPASKVFHIYSEFSVEKGVYVCLIKVRQESEELRQVLSVADTSVYGWATLLSERGKNGMQRILIPFIPGFYMNQSEFVLGHKDTGELRILGVERVLESLEVFHSSPFLTVSGHKHSTLTTSVTLYLIRIVNFTAFQQMSSPAFINVSCALTNQHEAVVVRAKDVSGADHCEESGVFKNFVGSYQILLFTLFAVLASTAFIFLAYNAFLNKVQTIPVVYVPTIGPTQPGSYTATCSPPHFLSSQPPLVQSRLQHWLWSIKH", "length": 1881 }, "evidence": [ { "id": "A0A9J7F2Z3", "url": "https://omabrowser.org/oma/group/A0A9J7F2Z3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5VU65-1", "protein_name": "Nuclear pore membrane glycoprotein 210-like", "gene_name": "NUP210L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTGCPASSRRRGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLEAQRGCYTWHSTHHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELRCDVKVDVINSIEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESAREELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLGFTVQPGNRWSLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMGMLYRYKVQVEGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIKIHVLKLNKMELLPFHADVEIGQIIEIPIAMYHINKETKEAMAFTDCSHLSLDLNMDKQGVFTLLKEGIQRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPLPQHNKWLIPVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGYSEKKSPKEISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFTLEVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQLASAIVTLTPMEQQDEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVTVHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIGPGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRLMLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQFSNTLLDIPASKVFQVHSDFSMEKGVYVCIIKVRPQSEELLQALSVADTSVYGWATLVSERSKNGMQRILIPFIPAFYINQSELVLSHKQDIGEIRVLGVDRVLRKLEVISSSPVLVVAGHSHSPLTPGLAIYSVRVVNFTSFQQMASPVFINISCVLTSQSEAVVVRAMKDKLGADHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLNKIQTVPVVYVPTLGTPQPGFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH", "length": 1888 }, "evidence": [ { "id": "A0A9J7F2Z3", "url": "https://omabrowser.org/oma/group/A0A9J7F2Z3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D2F7-1", "protein_name": "Nuclear pore membrane glycoprotein 210-like", "gene_name": "Nup210l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIAFGAPRRRSFGLLFSLAPHLFFLFLIGTLANKLNVPQVLLPFSREPGRVPFLLEAQRGCYIWHSTHHDAVTIQPLYENGTSCSQRAVLVAESTQPIRLSSIILAREVVTDHELRCDVKVDVIDNIEIVSRTRELYVDDAPLELMVRALDSKGNTFSTLAGMVFEWSIAQDNESSREELSSKIRILKYSEAEYSPPDYIIEMEKQERQGDVILVSGMRTGAAVVKVRIYEPFYKKVAAALIRLLVLENIFLIPSHDTYLLVGAYIKYRVAKMVQGRMTEVNFPLEHYTLELQDHRLTNGGLPSKSVALLDEKTAMVTAVQLGQTNLVFVHKNVHMRSVSGLPNSTIYVVEPGFLGFSIHPGGRWSLEVGQVYVITVEVFDKSSTRVYISDNLKITFQFSKEYFEEQLSTSNGSYHVVKALKDGVVVINATLTSSLQERNSSQPKTYQISHQQEVKIYFPIQLKPSFLAFPHHPLGISNRFTVQVEGGSGNFTWSSSNETVAMVTTKGVVTAGQVRGNSTILARDVQNPSRSGDIKVYVMKLNKMELLPFQADVEIGQIIEVPIAMYHVNTETKEAIAFTDCSHLPLDLNSDKQGVFTLFKEGIQKPGAMHCSSVHIAATSPGHTLVTVSVTGHEEHAWSSATFAAYEPLKALNPVDVALVTWQSVKEMVFEGGPHPWILEPSRFFLELSMEKAEAIRVAEVRLPAKRKQNQYVYRVLCLELGEQVLTFRIGNHPGVLNPSPSVEKVQVRFICAHPASMLVTPMYKAPSGTQPCPLPQYNKQLIPVSSLRDSVLELAVFDQHGRKFDNFSSLMLEWKSSNETLAHFEDSKSVEMVARDDGSGQTRLHGHQILKVHQMKGTVLIGVNFAGYSGKKSPKGISNSPRSAGVELILVEDVTVQPENATIYNHPDVKEIFNLVEGSGYFLINSSEQDIVTITYREAESSVQLVPAHPGFLTLEVYDLCLAYLGPAVAQIRVSDIQELELDLIDKVEIGKTVLVVVRVLGSSKHPFRNKYFRNMEVRLQLASAIVTLRLMEDQDEYSENYMLRAVTVGQTTLVAIATDRMGKKFTSAPRHIEVFPPFRLIPEKMTLIATNMMQIMSEGGPQPQSIIHFSISNQTVAVVNRRGQVTGKSVGTAVLHGTIQTVNEDTGKVIVFSQDEVQIEVVQLQAVRILAAATRLVTATEMPVYVMGVTSTQTPFSFSNASPLLTFHWSMSKRDVLDLVPRHSEVFLQLPAENNFAMVVHTKAAGRTTIKVTVRSENSSSGQLEGNLLELSDEIQILVFEKLQLFYANCQPEQILMPMNSQLKLHTNREGAAFVSSRVLKCFPNSSVIEEDGGGLLRSGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTYLRLSSYPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFHTHNTRLYMALNRDDLLLIGPGNRNYTYMAQAVNKGVTVVGLWDQRHPGMADYIPVAVEHAIEPDTKLIFVGDVICFSTQLVNQHGEPGVWMISTNNIVQTDTATGVGVARNPGTATIFHNIPGVVKTFREVVVNASSRLTLSYDLKTYLTNTPNATAFKLFISTGRNVNLKGSCTPSQALAIEKVLLPETLMLCHVQFSNTLLDIPASKVFHIHSEFSVEKGVYVCLIKVRQESKELRQVLSVADTSVYGWATLVSERGKNGMQRILIPFIPGFYMNQSEFVLGHKDTGELRILGVERVLESLEVFHSSPFLAVSGYKHSMLTTGLTVYLVRIVNFTAFQQMSSPAFINVSCALTNQQEAVIVRAKDASGADHCEDSGVFKNFVGSYQILLFTLFAVLASTSFIFLAHNAFLNKVQTIPVVYVPTTGTTQPGSYTATCSPPHFLSSRPPLVQSRLQHWLWSIKH", "length": 1881 }, "evidence": [ { "id": "A0A9J7F2Z3", "url": "https://omabrowser.org/oma/group/A0A9J7F2Z3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear pore", "id": "GO:0005643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005643", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z3" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Z3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1116, "end_pos": 1118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1261, "end_pos": 1263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1328, "end_pos": 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"https://www.ncbi.nlm.nih.gov/protein/XP_027246762" }, "gene_names": [ { "name": "Noa1", "type": "recommended", "evidence": [ { "id": "A0A9J7F325", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F325" } ] }, { "name": "Noa1", "type": "synonym", "evidence": [ { "id": "XP_027246762", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246762" } ] } ], "protein_names": [ { "name": "Nitric oxide-associated protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F325", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F325/entry#names_and_taxonomy" } ] }, { "name": "nitric oxide-associated protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027246762", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246762" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246762", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246762" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F325", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F325" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Noa1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F325", "locus": {} } ], "crossref": [ { "id": "A0A9J7F325", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F325", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01855", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01855", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756189", "url": "https://www.ncbi.nlm.nih.gov/gene/100756189", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052807", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052807", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756189", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756189", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F325", "url": "https://www.orthodb.org/?gene=A0A9J7F325", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46406", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46406", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46406:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46406:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246762", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246762", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F325", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F325", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F325-1", "url": 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"MLPGLQACRLLCGFLRGPAPAAACHGPARRLLAGKREAAFSQSPSSLGRRLPPGSTATEDYEEGPDTEERFLFPEYVPERDPEELLRELRELHQRQQDEERQRLQRREERLQRKLRAGLRSLQVPELPEATVPPSGIYCSGCGAELHCQHPSLPGYLTEEKFRGVTQADGGRARTVCQRCWLLVHHRRALRLRVSREQYLELVSAALRRPEPALVLYMVDLLDLPDALLPDLPKLVGPKQVFVLGNKVDLLPQDAPGYLQRLRKRLWDDCIRAGLVMAPGHRGPQYPTGDDPRDEKKNPNPSTRSSTVIKDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGTTNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLKFPICNPTPYRMFRRQKRLKEEATKAEEDLSEEEQSQLNQLKKHAYKIGRVGRTFSHSTEQTEDVPFEFDADSLAFDMGNEPVVAVHQCTKQVELTPEDVKDAHWFYDTPGITKENCILNLLTEKEVDIVLPTHSIVPRTFVLKPRMVLFLGAIARIDFLEGDQSAWFTVVASNFLPVHITSLDKADALYEKHAGHELLQVPMGGKERMAEFPPLVAEDITLKGGGDSEAVADIKFSSAGWVAVTPYSKGTLHLRGYTPEGTVLTVQPPVLPYIVNIKGHRIKKSVAYKTKKPSSLVYNLVKKK", "length": 691, "header": "tr|A0A9J7F325-1|A0A9J7F325_CRIGR Isoform 1 of Nitric oxide-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Noa1 PE=4 SV=1 CANONICAL=A0A9J7F325-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F325-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F325/entry", "sequence": { "sequence": "MLPGLQACRLLCGFLRGPAPAAACHGPARRLLAGKREAAFSQSPSSLGRRLPPGSTATEDYEEGPDTEERFLFPEYVPERDPEELLRELRELHQRQQDEERQRLQRREERLQRKLRAGLRSLQVPELPEATVPPSGIYCSGCGAELHCQHPSLPGYLTEEKFRGVTQADGGRARTVCQRCWLLVHHRRALRLRVSREQYLELVSAALRRPEPALVLYMVDLLDLPDALLPDLPKLVGPKQVFVLGNKVDLLPQDAPGYLQRLRKRLWDDCIRAGLVMAPGHRGPQYPTGDDPRDEKKNPNPSTRSSTVIKDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGTTNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLKFPICNPTPYRMFRRQKRLKEEATKAEEDLSEEEQSQLNQLKKHAYKIGRVGRTFSHSTEQTEDVPFEFDADSLAFDMGNEPVVAVHQCTKQVELTPEDVKDAHWFYDTPGITKENCILNLLTEKEVDIVLPTHSIVPRTFVLKPRMVLFLGAIARIDFLEGDQSAWFTVVASNFLPVHITSLDKADALYEKHAGHELLQVPMGGKERMAEFPPLVAEDITLKGGGDSEAVADIKFSSAGWVAVTPYSKGTLHLRGYTPEGTVLTVQPPVLPYIVNIKGHRIKKSVAYKTKKPSSLVYNLVKKK", "length": 691, "header": "tr|A0A9J7F325-1|A0A9J7F325_CRIGR Isoform 1 of Nitric oxide-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Noa1 PE=4 SV=1 CANONICAL=A0A9J7F325-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J3P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3P5/entry", "sequence": { "sequence": "MLPGLQACRLLCGFLRGPAPAAACHGPARRLLAGKREAAFSQSPSSLGRRLPPGSTATEDYEEGPDTEERFLFPEYVPERDPEELLRELRELHQRQQDEERQRLQRREERLQRKLRAGLRSLQVPELPEATVPPSGIYCSGCGAELHCQHPSLPGYLTEEKFRGVTQADGGRARTVCQRCWLLVHHRRALRLRVSREQYLELVSAALRRPEPALVLYMVDLLDLPDALLPDLPKLVGPKQVFVLGNKVDLLPQDAPGYLQRLRKRLWDDCIRAGLVMAPGHRGPQYPTGDDPRDEKKNPNPSTRSSTVIKDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGTTNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLKFPICNPTPYRMFRRQKRLKEEATKAEEDLSEEEQSQLNQLKKHAYKIGRVGRTFSHSTEQTEDVPFEFDADSLAFDMGNEPVVAVHQCTKQVELTPEDVKDAHWFYDTPGITKENCILNLLTEKEVDIVLPTHSIVPRTFVLKPRMVLFLGAIARIDFLEVPMGGKERMAEFPPLVAEDITLKGGGDSEAVADIKFSSAGWVAVTPYSKGTLHLRGYTPEGTVLTVQPPVLPYIVNIKGHRIKKSVAYKTKKPSSLVYNLVKKK", "length": 652, "header": "tr|A0A9J7J3P5-1|A0A9J7J3P5_CRIGR Computationally mapped isoform of Nitric oxide-associated protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Noa1 PE=4 SV=1 CANONICAL=A0A9J7F325-1" }, "locus": {} } ], "glycosylation": [], 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F375-1", "uniprot_ac": "A0A9J7F375", "uniprot_id": "A0A9J7F375_CRIGR", "mass": { "chemical_mass": 67863.0, "monoisotopic_mass": 67863.0 }, "refseq": { "ac": "XP_027248203", "name": "calcyphosin-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248203" }, "gene_names": [ { "name": "Caps2", "type": "recommended", "evidence": [ { "id": "A0A9J7F375", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375" } ] }, { "name": "Caps2", "type": "synonym", "evidence": [ { "id": "XP_027248203", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248203" } ] } ], "protein_names": [ { "name": "Calcyphosin-2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F375", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375/entry#names_and_taxonomy" } ] }, { "name": "calcyphosin-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027248203", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248203" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248203", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248203" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F375", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Caps2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375", "locus": {} } ], "crossref": [ { "id": "100760290", "url": "https://www.ncbi.nlm.nih.gov/gene/100760290", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760290", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F375", "url": "https://www.orthodb.org/?gene=A0A9J7F375", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F4R1", "url": "https://www.orthodb.org/?gene=A0A9J7F4R1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HBL4", "url": "https://www.orthodb.org/?gene=A0A9J7HBL4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34524", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34524", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34524:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34524:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25348", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25348", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248203", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248203", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F375", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F375-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4R1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4R1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4R1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLEVKGVAASRSHPRLFSRRKNSLHQGWTSRSRAIQNPCLTMVPPLDLGSLIDSDEEDDFSQTPPSTLNVHLKPPQLPSAVGWVVPYTQHHLNEEQDIIPEDLPAPTGKYKLKYQQYATEMKEGYKQYIQRIADKAKITSMQDTSRNKVNEKHDQEEEASVDDLVTLDRKALLQQGYADSPYHIRNSVRKSDAETVAAEKKKQTVVEQMMLDHLSRAVISDPEQGLNTEEQESSPVPPDPEGAPLRVRRRTLHETKIRTTSTLTVNDLAQKVEFDGRVLSRNGRDACRELIGFFFTHNQSLAVYEYRKFGKNRTNVLPFITKDTYSHQCGRRKGKPYRLGDFYTGATLTFLSCDHPSLPKSIKENTLFRLRITNIDQIALNSLKTAFDEHEEDTLSQEAQDWLVLQAIQADKLKEQLCKRGVRILTGLGKYFHHLDKAGSGLLEKADFQQALKVFNLQVSEQDFESSWLILQGNGHGKNKVDYGEFKRAIFGEMNEYRKSFVRKAFMKLDFNKTGIVSVIDIRKCYCAKKHPSVISGHSAEEEIKSSFLETLRDACSKSDEVSYGEFEDYYEGLSIEIADDEDFVSILRTPWGI", "length": 595, "header": "tr|A0A9J7F375-1|A0A9J7F375_CRIGR Isoform 1 of Calcyphosin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Caps2 PE=4 SV=1 CANONICAL=A0A9J7F375-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F375-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375/entry", "sequence": { "sequence": "MDLEVKGVAASRSHPRLFSRRKNSLHQGWTSRSRAIQNPCLTMVPPLDLGSLIDSDEEDDFSQTPPSTLNVHLKPPQLPSAVGWVVPYTQHHLNEEQDIIPEDLPAPTGKYKLKYQQYATEMKEGYKQYIQRIADKAKITSMQDTSRNKVNEKHDQEEEASVDDLVTLDRKALLQQGYADSPYHIRNSVRKSDAETVAAEKKKQTVVEQMMLDHLSRAVISDPEQGLNTEEQESSPVPPDPEGAPLRVRRRTLHETKIRTTSTLTVNDLAQKVEFDGRVLSRNGRDACRELIGFFFTHNQSLAVYEYRKFGKNRTNVLPFITKDTYSHQCGRRKGKPYRLGDFYTGATLTFLSCDHPSLPKSIKENTLFRLRITNIDQIALNSLKTAFDEHEEDTLSQEAQDWLVLQAIQADKLKEQLCKRGVRILTGLGKYFHHLDKAGSGLLEKADFQQALKVFNLQVSEQDFESSWLILQGNGHGKNKVDYGEFKRAIFGEMNEYRKSFVRKAFMKLDFNKTGIVSVIDIRKCYCAKKHPSVISGHSAEEEIKSSFLETLRDACSKSDEVSYGEFEDYYEGLSIEIADDEDFVSILRTPWGI", "length": 595, "header": "tr|A0A9J7F375-1|A0A9J7F375_CRIGR Isoform 1 of Calcyphosin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Caps2 PE=4 SV=1 CANONICAL=A0A9J7F375-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4R1/entry", "sequence": { "sequence": "MVPPLDLGSLIDSDEEDDFSQTPPSTLNVHLKPPQLPSAVGWVVPYTQHHLNEEQDIIPEDLPAPTGKYKLKYQQYATEMKEGYKQYIQRIADKAKITSMQDTSRNKVNEKHDQEEEASVDDLVTLDRKALLQQGYADSPYHIRNSVRKSDAETVAAEKKKQTVVEQMMLDHLSRAVISDPEQGLNTEEQESSPVPPDPEGAPLRVRRRTLHETKIRTTSTLTVNDLAQKVEFDGRVLSRNGRDACRELIGFFFTHNQSLAVYEYRKFGKNRTNVLPFITKDTYSHQCGRRKGKPYRLGDFYTGATLTFLSCDHPSLPKSIKENTLFRLRITNIDQIALNSLKTAFDEHEEDTLSQEAQDWLVLQAIQADKLKEQLCKRGVRILTGLGKYFHHLDKAGSGLLEKADFQQALKVFNLQVSEQDFESSWLILQGNGHGKNKVDYGEFKRAIFGEMNEYRKSFVRKAFMKLDFNKTGIVSVIDIRKCYCAKKHPSVISGHSAEEEIKSSFLETLRDACSKSDEVSYGEFEDYYEGLSIEIADDEDFVSILRTPWGI", "length": 553, "header": "tr|A0A9J7F4R1-1|A0A9J7F4R1_CRIGR Computationally mapped isoform of Calcyphosin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Caps2 PE=4 SV=1 CANONICAL=A0A9J7F375-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F0/entry", "sequence": { "sequence": "MDFQITGNPESLSNYEQDIIPEDLPAPTGKYKLKYQQYATEMKEGYKQYIQRIADKAKITSMQDTSRNKVNEKHDQEEEASVDDLVTLDRKALLQQGYADSPYHIRNSVRKSDAETVAAEKKKQTVVEQMMLDHLSRAVISDPEQGLNTEEQESSPVPPDPEGAPLRVRRRTLHETKIRTTSTLTVNDLAQKVEFDGRVLSRNGRDACRELIGFFFTHNQSLAVYEYRKFGKNRTNVLPFITKDTYSHQCGRRKGKPYRLGDFYTGATLTFLSCDHPSLPKSIKENTLFRLRITNIDQIALNSLKTAFDEHEEDTLSQEAQDWLVLQAIQADKLKEQLCKRGVRILTGLGKYFHHLDKAGSGLLEKADFQQALKVFNLQVSEQDFESSWLILQGNGHGKNKVDYGEFKRAIFGEMNEYRKSFVRKAFMKLDFNKTGIVSVIDIRKCYCAKKHPSVISGHSAEEEIKSSFLETLRDACSKSDEVSYGEFEDYYEGLSIEIADDEDFVSILRTPWGI", "length": 515, "header": "tr|A0A9J7H9F0-1|A0A9J7H9F0_CRIGR Computationally mapped isoform of Calcyphosin-2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Caps2 PE=4 SV=1 CANONICAL=A0A9J7F375-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBL4/entry", "sequence": { "sequence": "MDFQITGNPESLSNYIISFRVPPLDLGSLIDSDEEDDFSQTPPSTLNVHLKPPQLPSAVGWVVPYTQHHLNEEQDIIPEDLPAPTGKYKLKYQQYATEMKEGYKQYIQRIADKAKITSMQDTSRNKVNEKHDQEEEASVDDLVTLDRKALLQQGYADSPYHIRNSVRKSDAETVAAEKKKQTVVEQMMLDHLSRAVISDPEQGLNTEEQESSPVPPDPEGAPLRVRRRTLHETKIRTTSTLTVNDLAQKVEFDGRVLSRNGRDACRELIGFFFTHNQSLAVYEYRKFGKNRTNVLPFITKDTYSHQCGRRKGKPYRLGDFYTGATLTFLSCDHPSLPKSIKENTLFRLRITNIDQIALNSLKTAFDEHEEDTLSQEAQDWLVLQAIQADKLKEQLCKRGVRILTGLGKYFHHLDKAGSGLLEKADFQQALKVFNLQVSEQDFESSWLILQGNGHGKNKVDYGEFKRAIFGEMNEYRKSFVRKAFMKLDFNKTGIVSVIDIRKCYCAKKHPSVISGHSAEEEIKSSFLETLRDACSKSDEVSYGEFEDYYEGLSIEIADDEDFVSILRTPWGI", "length": 572, "header": "tr|A0A9J7HBL4-1|A0A9J7HBL4_CRIGR Computationally mapped isoform of Calcyphosin-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Caps2 PE=4 SV=1 CANONICAL=A0A9J7F375-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F375", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F375", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F375", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 513, "end_pos": 515, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F375", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F375" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 424, "end_pos": 459, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": 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domain-containing protein 19", "type": "recommended", "evidence": [ { "id": "A0A9J7F3Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8/entry#names_and_taxonomy" } ] }, { "name": "SH3 domain-containing protein 19 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027248787", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248787" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248787", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248787" } ] }, { "annotation": "May play a role in regulating A disintegrin and metalloproteases (ADAMs) in the signaling of EGFR-ligand shedding. May be involved in suppression of Ras-induced cellular transformation and Ras-mediated activation of ELK1. 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"length": 1068, "header": "tr|A0A9J7F3Y8-1|A0A9J7F3Y8_CRIGR Isoform 1 of SH3 domain-containing protein 19 OS=Cricetulus griseus OX=10029 GN=Sh3d19 PE=4 SV=1 CANONICAL=A0A9J7F3Y8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2L8L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L8L2/entry", "sequence": { "sequence": "MAEGRRREDEEEELRERRELGGPRRARGRALPGHSAADHNERRKPEHRSSSQGPLSSIRAVIKRSSRTCIQSELHRDRRRPEITIVAAEPLRPASWFPGAPPPGLGFPSTPVAGPWRPNDLVPAELPPSYEQVIKEINQVQVNTTNNNNAAATPRSTITSATQTDFPEEIDSDLPQTLQAPLKPLQASPAASAGDLPPSVAPLIVFDISEEQTCPENPSATRCPVPRPRSKPNLRPVARDTNSEEKGIQKSPVGPREDWPPPCLLDSTCNLDSQAVMNIMNTEQSQNSIVSRIKAFQGQTNTEISELPRKPEIIPRTVPPKPAVSSGKPLVPPKPAANRDSGQWGSWTGNRFKVTSREGLTPSSSPQEAESISVTKPELPKKPTPGLTRSVNHEISGGRPVAESPDAGKKVPTPAPRPLLPKKSASPDAPTYPSVPPKLVSVPPRLSVASQAKAFRSPGEGPPANTPAPTLQNKALGDIDLISFDDDVLPTSGSPAEEHIGSETVLDPFQLPTKTEPTKERAVPPAPTRKPTVIRIPAKPEKCLHEGPQGPPPLPSEKPVGNTYSTVSGKISNADRTRHPELEQASESGGLGHGPPRLPPRPVHGKVIPLWKPSPKGAPERPPPPKLSATKSSSKNLPLNRSSSDMDLQKKQSHLTSGLSKAKSQVFKNQDPVLPPRPQPGHPLYRKYMLSVPHGIANEDIVSQNPTELSCKRGDVLVILKQAENNYLECQRGEGTGRVHPSQMRIITPLEERPRSRPNDSGHTVDSGAPHAVVLHDFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKCRNQTGIFPANHVKVLVDIPEGRSGKRESFPSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILKEYVNEEWARGEIRDRTGIFPLNFVELVEDHPTSGANILSTKEPPKTKNEDPGSNSQASSPSGEWCRALHSFTAETSEDLSFKRGDRILILERLDSDWYRGRLHDREGIFPAVFVQPCPAEAKSMTTTILKGRKVKALYDFLGENEDELSFKAGDIITELEPIDDDWMSGELMGRSGIFPKNYVQFLQVS", "length": 1062, "header": "tr|A0A8C2L8L2-1|A0A8C2L8L2_CRIGR Computationally mapped isoform of SH3 domain-containing protein 19 OS=Cricetulus griseus OX=10029 GN=Sh3d19 PE=4 SV=1 CANONICAL=A0A9J7F3Y8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8/entry", "sequence": { "sequence": "MAEGRRREDEEEELRERRELGGPRRARGRALPGHSAADHNERRKPEHRSSSQGPLSSIRAVIKRSSRTCIQSELHRDRRRPEITIVAAEPLRPASWFPGAPPPGLGFPSTPVAGPWRPNDLVPAELPPSYEQVIKEINQVQVNTTNNNNAAATPRSTITSATQTDFPEEIDSDLPQTLQAPLKPLQASPAASAGDLPPSVAPLIVFDISEEQTCPENPSATRCPVPRPRSKPNLRPVARDTNSEEKGIQKSPVGPREDWPPPCLLDSTCNLDSQAVMNIMNTEQSQNSIVSRIKAFQGQTNTEISELPRKPEIIPRTVPPKPAVSSGKPLVPPKPAANRDSGQWGSWTGNRFKVTSREGLTPSSSPQEAESISVTKPELPKKPTPGLTRSVNHEISGGRPVAESPDAGKKVPTPAPRPLLPKKSASPDAPTYPSVPPKLVSVPPRLSVASQAKAFRSPGEGPPANTPAPTLQNKALGDIDLISFDDDVLPTSGSPAEEHIGSETVLDPFQLPTKTEPTKERAVPPAPTRKPTVIRIPAKPEKCLHEGPQGPPPLPSEKPVGNTYSTVSGKISNADRTRHPELEQASESGGLGHGPPRLPPRPVHGKVIPLWKPSPKGAPERPPPPKLSATKSSSKNLPLNRSSSDMDLQKKQSHLTSGLSKAKSQVFKNQDPVLPPRPQPGHPLYRKYMLSVPHGIANEDIVSQNPTELSCKRGDVLVILKQAENNYLECQRGEGTGRVHPSQMRIITPLEERPRSRPNLCFPSKDSGHTVDSGAPHAVVLHDFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKCRNQTGIFPANHVKVLVDIPEGRSGKRESFPSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILKEYVNEEWARGEIRDRTGIFPLNFVELVEDHPTSGANILSTKEPPKTKNEDPGSNSQASSPSGEWCRALHSFTAETSEDLSFKRGDRILILERLDSDWYRGRLHDREGIFPAVFVQPCPAEAKSMTTTILKGRKVKALYDFLGENEDELSFKAGDIITELEPIDDDWMSGELMGRSGIFPKNYVQFLQVS", "length": 1068, "header": "tr|A0A9J7F3Y8-1|A0A9J7F3Y8_CRIGR Isoform 1 of SH3 domain-containing protein 19 OS=Cricetulus griseus OX=10029 GN=Sh3d19 PE=4 SV=1 CANONICAL=A0A9J7F3Y8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9S4/entry", "sequence": { "sequence": "MPRGRASRTCIQSELHRDRRRPEITIVAAEPLRPASWFPGAPPPGLGFPSTPVAGPWRPNDLVPAELPPSYEQVIKEINQVQVNTTNNNNAAATPRSTITSATQTDFPEEIDSDLPQTLQAPLKPLQASPAASAGDLPPSVAPLIVFDISEEQTCPENPSATRCPVPRPRSKPNLRPVARDTNSEEKGIQKSPVGPREDWPPPCLLDSTCNLDSQAVMNIMNTEQSQNSIVSRIKAFQGQTNTEISELPRKPEIIPRTVPPKPAVSSGKPLVPPKPAANRDSGQWGSWTGNRFKVTSREGLTPSSSPQEAESISVTKPELPKKPTPGLTRSVNHEISGGRPVAESPDAGKKVPTPAPRPLLPKKSASPDAPTYPSVPPKLVSVPPRLSVASQAKAFRSPGEGPPANTPAPTLQNKALGDIDLISFDDDVLPTSGSPAEEHIGSETVLDPFQLPTKTEPTKERAVPPAPTRKPTVIRIPAKPEKCLHEGPQGPPPLPSEKPVGNTYSTVSGKISNADRTRHPELEQASESGGLGHGPPRLPPRPVHGKVIPLWKPSPKGAPERPPPPKLSATKSSSKNLPLNRSSSDMDLQKKQSHLTSGLSKAKSQVFKNQDPVLPPRPQPGHPLYRKYMLSVPHGIANEDIVSQNPTELSCKRGDVLVILKQAENNYLECQRGEGTGRVHPSQMRIITPLEERPRSRPNDSGHTVDSGAPHAVVLHDFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKCRNQTGIFPANHVKVLVDIPEGRSGKRESFPSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILKEYVNEEWARGEIRDRTGIFPLNFVELVEDHPTSGANILSTKEPPKTKNEDPGSNSQASSPSGEWCRALHSFTAETSEDLSFKRGDRILILERLDSDWYRGRLHDREGIFPAVFVQPCPAEAKSMTTTILKGRKVKALYDFLGENEDELSFKAGDIITELEPIDDDWMSGELMGRSGIFPKNYVQFLQVS", "length": 1003, "header": "tr|A0A9J7H9S4-1|A0A9J7H9S4_CRIGR Computationally mapped isoform of SH3 domain-containing protein 19 OS=Cricetulus griseus OX=10029 GN=Sh3d19 PE=4 SV=1 CANONICAL=A0A9J7F3Y8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J4V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4V7/entry", "sequence": { "sequence": "MPRGRASRTCIQSELHRDRRRPEITIVAAEPLRPASWFPGAPPPGLGFPSTPVAGPWRPNDLVPAELPPSYEQVIKEINQVQVNTTNNNNAAATPRSTITSATQTDFPEEIDSDLPQTLQAPLKPLQASPAASAGDLPPSVAPLIVFDISEEQTCPENPSATRCPVPRPRSKPNLRPVARDTNSEEKGIQKSPVGPREDWPPPCLLDSTCNLDSQAVMNIMNTEQSQNSIVSRIKAFQGQTNTEISELPRKPEIIPRTVPPKPAVSSGKPLVPPKPAANRDSGQWGSWTGNRFKVTSREGLTPSSSPQEAESISVTKPELPKKPTPGLTRSVNHEISGGRPVAESPDAGKKVPTPAPRPLLPKKSASPDAPTYPSVPPKLVSVPPRLSVASQAKAFRSPGEGPPANTPAPTLQNKALGDIDLISFDDDVLPTSGSPAEEHIGSETVLDPFQLPTKTEPTKERAVPPAPTRKPTVIRIPAKPEKCLHEGPQGPPPLPSEKPVGNTYSTVSGKISNADRTRHPELEQASESGGLGHGPPRLPPRPVHGKVIPLWKPSPKGAPERPPPPKLSATKSSSKNLPLNRSSSDMDLQKKQSHLTSGLSKAKSQVFKNQDPVLPPRPQPGHPLYRKYMLSVPHGIANEDIVSQNPTELSCKRGDVLVILKQAENNYLECQRGEGTGRVHPSQMRIITPLEERPRSRPNLCFPSKDSGHTVDSGAPHAVVLHDFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKCRNQTGIFPANHVKVLVDIPEGRSGKRESFPSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILKEYVNEEWARGEIRDRTGIFPLNFVELVEDHPTSGANILSTKEPPKTKNEDPGSNSQASSPSGEWCRALHSFTAETSEDLSFKRGDRILILERLDSDWYRGRLHDREGIFPAVFVQPCPAEAKSMTTTILKGRKVKALYDFLGENEDELSFKAGDIITELEPIDDDWMSGELMGRSGIFPKNYVQFLQVS", "length": 1009, "header": "tr|A0A9J7J4V7-1|A0A9J7J4V7_CRIGR Computationally mapped isoform of SH3 domain-containing protein 19 OS=Cricetulus griseus OX=10029 GN=Sh3d19 PE=4 SV=1 CANONICAL=A0A9J7F3Y8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7N0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7N0/entry", "sequence": { "sequence": "MAEGRRREDEEEELRERRELGGPRRARGRALPGHSAADHNERRKPEHRSSSQGPLSSIRAVIKRSSRTCIQSELHRDRRRPEITIVAAEPLRPASWFPGAPPPGLGFPSTPVAGPWRPNDLVPAELPPSYEQVIKEINQVQVNTTNNNNAAATPRSTITSATQTDFPEEIDSDLPQTLQAPLKPLQASPAASAGDLPPSVAPLIVFDISEEQTCPENPSATRCPVPRPRSKPNLRPVARDTNSEEKGIQKSPVGPREDWPPPCLLDSTCNLDSQAVMNIMNTEQSQNSIVSRIKAFQGQTNTEISELPRKPEIIPRTVPPKPAVSSGKPLVPPKPAANRDSGQWGSWTGNRFKVTSREGLTPSSSPQEAESISVTKPELPKKPTPGLTRSVNHEISGGRPVAESPDAGKKVPTPAPRPLLPKKSASPDAPTYPSVPPKLVSVPPRLSVASQAKAFRSPGEGPPANTPAPTLQNKALGDIDLISFDDDVLPTSGSPAEEHIGSETVLDPFQLPTKTEPTKERAVPPAPTRKPTVIRIPAKPEKCLHEGPQGPPPLPSEKPVGNTYSTVSGKISNADRTRHPELEQASESGGLGHGPPRLPPRPVHGKVIPLWKPSPKGAPERPPPPKLSATKSSSKNLPLNRSSSDMDLQKKQSHLTSGLSKAKSQVFKNQDPVLPPRPQPGHPLYRKYMLSVPHGIANEDIVSQNPTELSCKRGDVLVILKQAENNYLECQRGEGTGRVHPSQMRIITPLEERPRSRPNLCFPSKDSGHTVDSGAPHAVVLHDFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKCRNQTGIFPANHVKVLVDIPEGRSGKRESFPSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILKEYVNEEWARGEIRDRTGIFPLNFVELVEDHPTSGANILSTKEPPKTKNEDPGSNSQASSPSGEWCRALHSFTAETSEDLSFKRGDRILILERLDSDWYRGRLHDREGIFPAVFVQPCPEAKSMTTTILKGRKVKALYDFLGENEDELSFKAGDIITELEPIDDDWMSGELMGRSGIFPKNYVQFLQVS", "length": 1067, "header": "tr|A0A9J7J7N0-1|A0A9J7J7N0_CRIGR Computationally mapped isoform of SH3 domain-containing protein 19 OS=Cricetulus griseus OX=10029 GN=Sh3d19 PE=4 SV=1 CANONICAL=A0A9J7F3Y8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 384, "start_aa": "Thr", "end_pos": 384, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr384", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761657", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761657", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 640, "end_pos": 642, "annotation": "n_glycosylation_sequon" }, { "start_pos": 817, "end_pos": 819, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F3Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3Y8" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 690, "end_pos": 749, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 384 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 640, "end_pos": 642 }, { "start_pos": 817, "end_pos": 819 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247701", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247701" } ] }, { "annotation": "Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes of mRNA metabolism. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247446", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247446" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F491", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F491" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Commd2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F491", "locus": {} } ], "crossref": [ { "id": "A0A9J7F491", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F491", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04750", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04750", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770093", "url": "https://www.ncbi.nlm.nih.gov/gene/100770093", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037354", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037354", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770093", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770093", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F491", "url": "https://www.orthodb.org/?gene=A0A9J7F491", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15857:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15857:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247446", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247446", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F491", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F491", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F491-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F491-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLDLSEEHKEHLAFLPQVDIAVVAEFGRIAVEFLRRGSNPKIYEGAARKLNVSSDTIQHGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILNELAPRLPSYHSLEWRLDVQLASRSLRQQIKPAVTVKLNLNKNGDHSTHFLQTDPATLLHLVQQLEQALEEMKTNHCRRVVRSIK", "length": 199, "header": "tr|A0A9J7F491-1|A0A9J7F491_CRIGR Isoform 1 of COMM domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Commd2 PE=4 SV=1 CANONICAL=A0A9J7F491-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F491-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F491/entry", "sequence": { "sequence": "MLLDLSEEHKEHLAFLPQVDIAVVAEFGRIAVEFLRRGSNPKIYEGAARKLNVSSDTIQHGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILNELAPRLPSYHSLEWRLDVQLASRSLRQQIKPAVTVKLNLNKNGDHSTHFLQTDPATLLHLVQQLEQALEEMKTNHCRRVVRSIK", "length": 199, "header": "tr|A0A9J7F491-1|A0A9J7F491_CRIGR Isoform 1 of COMM domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Commd2 PE=4 SV=1 CANONICAL=A0A9J7F491-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247037", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247037" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4A8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4A8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lonrf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4A8", "locus": {} } ], "crossref": [ { "id": "cd16514", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16514", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774743", "url": "https://www.ncbi.nlm.nih.gov/gene/100774743", "database": "GeneID", "categories": [ "Genome 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250866" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cabcoco1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J4", "locus": {} } ], "crossref": [ { "id": "A0A9J7F4J4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F4J4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755859", "url": "https://www.ncbi.nlm.nih.gov/gene/100755859", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032727", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032727", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755859", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755859", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F4J4", "url": "https://www.orthodb.org/?gene=A0A9J7F4J4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28457", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28457", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28457:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28457:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14769", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14769", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250866", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F4J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLWTPGATTPAVTPADSTADSEKNTEFQENEKILSQDLLSPDQITDLLSEADMDGIQEKMKVFLNFKNLRTCLRDAILLDYYVSGFFWAKTMDFSINQHSKFMTLLDLLLHNLQTLHMSLGDSIKWLGEVMAEIGPNHSQKNQELHVFDVKEANAIIDYLKTSLFQHYRLYEFMFYSTREEIVIGTEQTVEVCKSADHPFPAPLEEGISLDIYSAFIDRLPTPESEGKVLDQEQSPQDLQPESEAAEADSLAGFTIDDVKSALARVTDEVLLNIQKEINEKLQAQEEAFNTRIEKLKKA", "length": 301, "header": "tr|A0A9J7F4J4-1|A0A9J7F4J4_CRIGR Isoform 1 of Ciliary-associated calcium-binding coiled-coil protein 1 OS=Cricetulus griseus OX=10029 GN=Cabcoco1 PE=4 SV=1 CANONICAL=A0A9J7F4J4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4J4/entry", "sequence": { "sequence": "MAGLWTPGATTPAVTPADSTADSEKNTEFQENEKILSQDLLSPDQITDLLSEADMDGIQEKMKVFLNFKNLRTCLRDAILLDYYVSGFFWAKTMDFSINQHSKFMTLLDLLLHNLQTLHMSLGDSIKWLGEVMAEIGPNHSQKNQELHVFDVKEANAIIDYLKTSLFQHYRLYEFMFYSTREEIVIGTEQTVEVCKSADHPFPAPLEEGISLDIYSAFIDRLPTPESEGKVLDQEQSPQDLQPESEAAEADSLAGFTIDDVKSALARVTDEVLLNIQKEINEKLQAQEEAFNTRIEKLKKA", "length": 301, "header": "tr|A0A9J7F4J4-1|A0A9J7F4J4_CRIGR Isoform 1 of Ciliary-associated calcium-binding coiled-coil protein 1 OS=Cricetulus griseus OX=10029 GN=Cabcoco1 PE=4 SV=1 CANONICAL=A0A9J7F4J4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 15, "start_aa": "Thr", "end_pos": 15, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr15", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F4L5-1", "uniprot_ac": "A0A9J7F4L5", "uniprot_id": "A0A9J7F4L5_CRIGR", "mass": { "chemical_mass": 51162.0, "monoisotopic_mass": 51162.0 }, "refseq": { "ac": "XP_027250938", "name": "interferon-induced protein 44-like isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250938" }, "gene_names": [ { "name": "Ifi44l", "type": "recommended", "evidence": [ { "id": "A0A9J7F4L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5" } ] }, { "name": "Ifi44l", "type": "synonym", "evidence": [ { "id": "XP_027250938", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250938" } ] } ], "protein_names": [ { "name": "Interferon-induced protein 44-like isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7F4L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5/entry#names_and_taxonomy" } ] }, { "name": "Interferon-induced protein 44-like isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7F4L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5/entry#names_and_taxonomy" } ] }, { "name": "interferon-induced protein 44-like isoform 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250938" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ifi44l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5", "locus": {} } ], "crossref": [ { "id": "cd00882", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00882", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760542", "url": "https://www.ncbi.nlm.nih.gov/gene/100760542", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760542", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760542", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F4L5", "url": "https://www.orthodb.org/?gene=A0A9J7F4L5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14241", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14241", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14241:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14241:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027250938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250938", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F4L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J948", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J948", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J948-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J948-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVTTRLTWIQERVLGKLLGNTSLTLLYKSGAHGLHALDMIQRCSHQGSTMTVFHLKQDVVGIFMLEHFPVLHSKKPSTCVLFAFKENTSTGTSALFLNAQVEINTTELKFFSSDDMWLTVNLKKNKLHLSGEVIKELELNLKCFSEYLECEIFRVDGVKNDPGFIKKMLTAKQHRRRFLSALRAYRPSGDLVSEVRILLVGPVGSGKSSFFNSVKSAFYGHFTRQAVMGSDETSITKQYRTYSVKNGEGGKTLPFILCDSMGLDEREEAGLCLDDILHILKGFVPDRYQFDPCKPIKPRHLAYNTSPPLKDRIHCVAYVLNINSVNSLSDKMVAKLKRIQRDVIDCGIGQVVLLTNVDNCDEVLDDNFTNMTESTTSQSQVKKVQNMLTIPVSNILMVSNYTSEQSMHPIRDILIFAALRQMLRAADDSLEDLPLENRQDQLMAPSAASHASKK", "length": 455, "header": "tr|A0A9J7F4L5-1|A0A9J7F4L5_CRIGR Isoform 1 of Interferon-induced protein 44-like isoform X3 OS=Cricetulus griseus OX=10029 GN=Ifi44l PE=4 SV=1 CANONICAL=A0A9J7F4L5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4L5/entry", "sequence": { "sequence": "MEVTTRLTWIQERVLGKLLGNTSLTLLYKSGAHGLHALDMIQRCSHQGSTMTVFHLKQDVVGIFMLEHFPVLHSKKPSTCVLFAFKENTSTGTSALFLNAQVEINTTELKFFSSDDMWLTVNLKKNKLHLSGEVIKELELNLKCFSEYLECEIFRVDGVKNDPGFIKKMLTAKQHRRRFLSALRAYRPSGDLVSEVRILLVGPVGSGKSSFFNSVKSAFYGHFTRQAVMGSDETSITKQYRTYSVKNGEGGKTLPFILCDSMGLDEREEAGLCLDDILHILKGFVPDRYQFDPCKPIKPRHLAYNTSPPLKDRIHCVAYVLNINSVNSLSDKMVAKLKRIQRDVIDCGIGQVVLLTNVDNCDEVLDDNFTNMTESTTSQSQVKKVQNMLTIPVSNILMVSNYTSEQSMHPIRDILIFAALRQMLRAADDSLEDLPLENRQDQLMAPSAASHASKK", "length": 455, "header": "tr|A0A9J7F4L5-1|A0A9J7F4L5_CRIGR Isoform 1 of Interferon-induced protein 44-like isoform X3 OS=Cricetulus griseus OX=10029 GN=Ifi44l PE=4 SV=1 CANONICAL=A0A9J7F4L5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J948-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J948/entry", "sequence": { "sequence": "MEVTTRLTWIQERVLGKLLGNTSLTLLYKSGAHGLHALDMIQRCSHQGSTMTVFHLKQDVVGIFMLEHFPVLHSKKPSTCVLFAFKENTSTGTSALFLNAQVEINTTELKFFSSDDMWLTVNLKKNKLHLSGEVIKELELNLKCFSEYLECEIFRVDGVKNDPGFIKKMLTAKQHRRRFLSALRAYRPSGDLVSEVRILLVGPVGSGKSSFFNSVKSAFYGHFTRQAVMGSDETSITKQYRTYSVKNGEGGKTLPFILCDSMGLDEREEAGLCLDDILHILKGFVPDRYQFDPCKPIKPRHLAYNTSPPLKDRIHCVAYVLNINSVNSLSDKMVAKLKRIQRDVIDCGIGQVVLLTNVDNCDEVLDDNFTNMTESTTSQSQVKKVQNMLTIPVSNILMVSNYTSEQSMHPIRDILIFAALRQMLRAADDSLEDLPLENRIS", "length": 441, "header": "tr|A0A9J7J948-1|A0A9J7J948_CRIGR Computationally mapped isoform of Interferon-induced protein 44-like isoform X6 OS=Cricetulus griseus OX=10029 GN=Ifi44l PE=4 SV=1 CANONICAL=A0A9J7F4L5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250374" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Efhb", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9", "locus": {} } ], "crossref": [ { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772930", "url": "https://www.ncbi.nlm.nih.gov/gene/100772930", "database": "GeneID", "categories": [ "Genome 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"database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12086", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12086", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12086:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12086:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25325", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25325", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSFMRVRSPKALQTSLEPSTAFPLEMSSLGRMRAPETTEVGLTQEQKEDIIDRTHRDSKSLSELGFEMRQRQNRRWRERISSPETKSPPSHALGVDLERRTISRTPVELSNLGFHRGYTLQAPKTLGVLPGRVGSENEGLPPGPPLGAEPGSPQAAASTGRSVACGPAWMEEPVEGLEQRKELEKEPTYVRNPYAKTPPKEVDIGLPQTQETGEAENAEPQIGLVTEPSERPFARQPEDTKEPEATEPGVEAPTHIRPIYSGKFFDRMPCWPSAGKVXPVGYRVATCLTEKLPRLITPPEAKKYFNFRYPPTGAERVFYGRANDPQISPYLTHGIRSQIPVTVSTLVNPQPITKFQQKFKDKKESIYFSNQRAPLGKSHDQTPGLPKGLDVINTTFGTPIIREQCASAIVNPPKPSEDVLKEGLEGHDLYVVSHHDYFAGEAKNRKYNPESFQRFKLYGGPTPHFNDGRTMAKTLHWLHELQMERGAKITSKRFDDFKEKFQHKVGRVLDPIAETMNIAPGHTFGACLKPEEYGVGDLIHYRLPGEYLRGKDRQRALIAAARHHLKKFNYQHFDTLLSAFRHYDKKGDGMIDREELHESCDQANLHLDEVLLNQLFEYCDVDQDGLINFVEFANFLNWKDNVPLTEYEKRVIIKGRKQDCKNITETNMREVKPTLLIQPEDIVPKEPGSSEETVRVLLRPSDKVSNHYKTTSSEINGIVGAVPPMCYPIYGVPMIRSDIPAPRIRRVGDVNNYGEEGNAYSLLHPSIFSQKGVFETDFFKTRSKEEISDILTNIGVKLSEEEFENVWNLASKKHHRGEVCVETIRNVLDELQHASRDCKTVM", "length": 843, "header": "tr|A0A9J7F4M9-1|A0A9J7F4M9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: EF-hand domain-containing family member B isoform X2 OS=Cricetulus griseus OX=10029 GN=Efhb PE=4 SV=1 CANONICAL=A0A9J7F4M9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9/entry", "sequence": { "sequence": "MCSFMRVRSPKALQTSLEPSTAFPLEMSSLGRMRAPETTEVGLTQEQKEDIIDRTHRDSKSLSELGFEMRQRQNRRWRERISSPETKSPPSHALGVDLERRTISRTPVELSNLGFHRGYTLQAPKTLGVLPGRVGSENEGLPPGPPLGAEPGSPQAAASTGRSVACGPAWMEEPVEGLEQRKELEKEPTYVRNPYAKTPPKEVDIGLPQTQETGEAENAEPQIGLVTEPSERPFARQPEDTKEPEATEPGVEAPTHIRPIYSGKFFDRMPCWPSAGKVXPVGYRVATCLTEKLPRLITPPEAKKYFNFRYPPTGAERVFYGRANDPQISPYLTHGIRSQIPVTVSTLVNPQPITKFQQKFKDKKESIYFSNQRAPLGKSHDQTPGLPKGLDVINTTFGTPIIREQCASAIVNPPKPSEDVLKEGLEGHDLYVVSHHDYFAGEAKNRKYNPESFQRFKLYGGPTPHFNDGRTMAKTLHWLHELQMERGAKITSKRFDDFKEKFQHKVGRVLDPIAETMNIAPGHTFGACLKPEEYGVGDLIHYRLPGEYLRGKDRQRALIAAARHHLKKFNYQHFDTLLSAFRHYDKKGDGMIDREELHESCDQANLHLDEVLLNQLFEYCDVDQDGLINFVEFANFLNWKDNVPLTEYEKRVIIKGRKQDCKNITETNMREVKPTLLIQPEDIVPKEPGSSEETVRVLLRPSDKVSNHYKTTSSEINGIVGAVPPMCYPIYGVPMIRSDIPAPRIRRVGDVNNYGEEGNAYSLLHPSIFSQKGVFETDFFKTRSKEEISDILTNIGVKLSEEEFENVWNLASKKHHRGEVCVETIRNVLDELQHASRDCKTVM", "length": 843, "header": "tr|A0A9J7F4M9-1|A0A9J7F4M9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: EF-hand domain-containing family member B isoform X2 OS=Cricetulus griseus OX=10029 GN=Efhb PE=4 SV=1 CANONICAL=A0A9J7F4M9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 463, "start_aa": "Thr", "end_pos": 463, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr463", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772930", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772930", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "axonemal microtubule", "id": "GO:0005879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005879", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F4M9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4M9" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 572, "end_pos": 607, "start_aa": "Gln", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 463 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 394, "end_pos": 396 }, { "start_pos": 663, "end_pos": 665 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A9J7F4N8-1", "uniprot_ac": "A0A9J7F4N8", "uniprot_id": "A0A9J7F4N8_CRIGR", "mass": { "chemical_mass": 153840.0, "monoisotopic_mass": 153840.0 }, "refseq": { "ac": "XP_027247282", "name": "LOW QUALITY PROTEIN: ubinuclein-2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247282" }, "gene_names": [ { "name": "Ubn2", "type": "recommended", "evidence": [ { "id": "A0A9J7F4N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N8" } ] }, { "name": "Ubn2", "type": "synonym", "evidence": [ { "id": "XP_027247282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247282" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: ubinuclein-2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027247282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247282" }, { "id": "A0A9J7F4N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247282", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247282" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4N8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ubn2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N8", "locus": {} } ], "crossref": [ { "id": "100768627", "url": "https://www.ncbi.nlm.nih.gov/gene/100768627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR014840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768627", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768627", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F4N8", "url": "https://www.orthodb.org/?gene=A0A9J7F4N8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21669", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21669", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21669:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21669:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247282", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247282", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F4N8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4N8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4N8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248300", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248300" } ] }, { "annotation": "May have an involvement in muscle development or hypertrophy. 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"PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248023", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F4X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4X9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F517", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F517-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSPCPAQNSYPCLRLTLSAPGTSGDLHKVTALTTMLSGRWWPSIWGNLGLSLQNPSQGPQLCALYPFTYIGADGRQVSLAEGDRFLLLRKTNSDWWLVRRLGASPSSRPIFVPAAYMTEESLSCPRPVDASHNASLWSPGTKLVHSSLEEVHLSQEPRVSSEHTMCRSVSMASLKPCFLKPLKKGLRERSPSQEGSVTEASAVMKPGSMEQTETLIRGSGALQPQEWLDPQGLSSLSRSSAWGDLSDHRAALQSCPALPHLDDPHEEMSGLINMTKIAQGGRKLRKNWGPAWVVLTGNSLVFYRERPPQCAPSQGWAPAGSRPESSVDLRGAALANGRHLSSRRNVLHIRTVPGHEFLLQSDEEPELRAWHRALRAVIDRLDRENPLELRLSGSGPAELAELSAGEDDELESEPVSKPLIRLSSRRVSSRSAEGTEQKNRVRNKLKRLIAKRPTLQSLQERGLFRDQVFGCQLESLCQREGDTVPSFVRLCVEAVDKKGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYMFPEQPGQEGKLDLDSAEWDDIHVVTGALKLFFRELPQPLVPTPLLPHFRDALELSEPDQCLSEMKKLVDLLPKPNRDTLQYILEHLCRVIAHSDENRMTAHNLGIVFGPTLFRPEQETSDMTAHVFYPGQLIQLMLNNFDSLFP", "length": 680, "header": "tr|A0A9J7F517-1|A0A9J7F517_CRIGR Isoform 1 of Rho GTPase-activating protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgap9 PE=4 SV=1 CANONICAL=A0A9J7F517-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4X9/entry", "sequence": { "sequence": "MEQTETLIRGSGALQPQEWLDPQGLSSLSRSSAWGDLSDHRAALQSCPALPHLDDPHEEMSGLINMTKIAQGGRKLRKNWGPAWVVLTGNSLVFYRERPPQCAPSQGWAPAGSRPESSVDLRGAALANGRHLSSRRNVLHIRTVPGHEFLLQSDEEPELRAWHRALRAVIDRLDRENPLELRLSGSGPAELAELSAGEDDELESEPVSKPLIRLSSRRVSSRSAEGTEQKNRVRNKLKRLIAKRPTLQSLQERGLFRDQVFGCQLESLCQREGDTVPSFVRLCVEAVDKKGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYMFPEQPGQEGKLDLDSAEWDDIHVVTGALKLFFRELPQPLVPTPLLPHFRDALELSEPDQCLSEMKKLVDLLPKPNRDTLQYILEHLCRVIAHSDENRMTAHNLGIVFGPTLFRPEQETSDMTAHVFYPGQLIQLMLNNFDSLFP", "length": 471, "header": "tr|A0A9J7F4X9-1|A0A9J7F517_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgap9 PE=4 SV=1 CANONICAL=A0A9J7F517-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F517-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517/entry", "sequence": { "sequence": "MVSPCPAQNSYPCLRLTLSAPGTSGDLHKVTALTTMLSGRWWPSIWGNLGLSLQNPSQGPQLCALYPFTYIGADGRQVSLAEGDRFLLLRKTNSDWWLVRRLGASPSSRPIFVPAAYMTEESLSCPRPVDASHNASLWSPGTKLVHSSLEEVHLSQEPRVSSEHTMCRSVSMASLKPCFLKPLKKGLRERSPSQEGSVTEASAVMKPGSMEQTETLIRGSGALQPQEWLDPQGLSSLSRSSAWGDLSDHRAALQSCPALPHLDDPHEEMSGLINMTKIAQGGRKLRKNWGPAWVVLTGNSLVFYRERPPQCAPSQGWAPAGSRPESSVDLRGAALANGRHLSSRRNVLHIRTVPGHEFLLQSDEEPELRAWHRALRAVIDRLDRENPLELRLSGSGPAELAELSAGEDDELESEPVSKPLIRLSSRRVSSRSAEGTEQKNRVRNKLKRLIAKRPTLQSLQERGLFRDQVFGCQLESLCQREGDTVPSFVRLCVEAVDKKGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYMFPEQPGQEGKLDLDSAEWDDIHVVTGALKLFFRELPQPLVPTPLLPHFRDALELSEPDQCLSEMKKLVDLLPKPNRDTLQYILEHLCRVIAHSDENRMTAHNLGIVFGPTLFRPEQETSDMTAHVFYPGQLIQLMLNNFDSLFP", "length": 680, "header": "tr|A0A9J7F517-1|A0A9J7F517_CRIGR Isoform 1 of Rho GTPase-activating protein 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgap9 PE=4 SV=1 CANONICAL=A0A9J7F517-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4X9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4X9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756457", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756457", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F517", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F517", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F517", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F517", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 266, "end_pos": 380, "start_aa": "His", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F517", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 472, "end_pos": 679, "start_aa": "Cys", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F517", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F517" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 123, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 274, "end_pos": 276 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F4Z4-1", "uniprot_ac": "A0A9J7F4Z4", "uniprot_id": "A0A9J7F4Z4_CRIGR", "mass": { "chemical_mass": 27021.0, "monoisotopic_mass": 27021.0 }, "refseq": { "ac": "XP_016829532", "name": "occludin/ELL domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829532" }, "gene_names": [ { "name": "Ocel1", "type": "recommended", "evidence": [ { "id": "A0A9J7F4Z4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4Z4" } ] }, { "name": "Ocel1", "type": "synonym", "evidence": [ { "id": "XP_016829532", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829532" } ] } ], "protein_names": [ { "name": "Occludin/ELL domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F4Z4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4Z4/entry#names_and_taxonomy" } ] }, { "name": "occludin/ELL domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016829532", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829532" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases assembly gap :: added 806 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613716.1) and transcript sequence (IACG01044778.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016829532.1. 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"length": 1230, "header": "tr|A0A9J7F529-1|A0A9J7F529_CRIGR Isoform 1 of Cullin-associated NEDD8-dissociated protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cand1 PE=3 SV=1 CANONICAL=A0A9J7F529-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F529-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F529/entry", "sequence": { "sequence": "MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPFTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPAVVACVGDPFYKITSEALLVTQQLVRVIRPLDQPSSFDAAPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGPDLSNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGLPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGQHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVAGLKPYVENIWTLLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKDSSSTNLESMDTS", "length": 1230, "header": "tr|A0A9J7F529-1|A0A9J7F529_CRIGR Isoform 1 of Cullin-associated NEDD8-dissociated protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cand1 PE=3 SV=1 CANONICAL=A0A9J7F529-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F529", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F529" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F529", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F529" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768210", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F529", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F529" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F529", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F529" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "SCF complex assembly", "id": "GO:0010265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010265", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F529", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F529" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1054, "end_pos": 1056, "annotation": "n_glycosylation_sequon" }, { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 680, "end_pos": 682, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F529", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F529" }, { "id": "PF08623", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08623" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TATA-binding protein interacting (TIP20)", "eco_id": "ECO_0000259", "start_pos": 1040, "end_pos": 1202, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1054, "end_pos": 1056 }, { "start_pos": 225, "end_pos": 227 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 680, "end_pos": 682 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FA27-1", "uniprot_ac": "A0A9J7FA27", "uniprot_id": "A0A9J7FA27_CRIGR", "mass": { "chemical_mass": 15996.0, "monoisotopic_mass": 15996.0 }, "refseq": { "ac": "XP_027251594", "name": "ragulator complex protein LAMTOR3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251594" }, "gene_names": [ { "name": "Lamtor3", "type": "recommended", "evidence": [ { "id": "A0A9J7FA27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ] }, { "name": "Lamtor3", "type": "synonym", "evidence": [ { "id": "XP_027251594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251594" } ] } ], "protein_names": [ { "name": "Ragulator complex protein LAMTOR3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FA27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27/entry#names_and_taxonomy" } ] }, { "name": "ragulator complex protein LAMTOR3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027251594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251594" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251594" } ] }, { "annotation": "As part of the Ragulator complex it is involved in amino acid sensing and activation of mTORC1, a signaling complex promoting cell growth in response to growth factors, energy levels, and amino acids. Activated by amino acids through a mechanism involving the lysosomal V-ATPase, the Ragulator plays a dual role for the small GTPases Rag (RagA/RRAGA, RagB/RRAGB, RagC/RRAGC and/or RagD/RRAGD): it (1) acts as a guanine nucleotide exchange factor (GEF), activating the small GTPases Rag and (2) mediates recruitment of Rag GTPases to the lysosome membrane. Activated Ragulator and Rag GTPases function as a scaffold recruiting mTORC1 to lysosomes where it is in turn activated. Adapter protein that enhances the efficiency of the MAP kinase cascade facilitating the activation of MAPK2.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y5#function" }, { "database": "UniProtKB", "id": "ARBA00045176", "url": "https://www.uniprot.org/uniprotkb/ARBA00045176#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lamtor3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27", "locus": {} } ], "crossref": [ { "id": "A0A9J7FA27", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FA27", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751917", "url": "https://www.ncbi.nlm.nih.gov/gene/100751917", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015019", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015019", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751917", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751917", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2M4Y5", "url": "https://www.orthodb.org/?gene=A0A8C2M4Y5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FA27", "url": "https://www.orthodb.org/?gene=A0A9J7FA27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13378", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13378", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13378:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13378:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251594", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M4Y5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M4Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5J3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5J3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSSRDRGPLTSRPFSPCSANASTHKKRVQVMGLGKACARSARERLPPRRCWVEANRGAGTSGASPAALGAARRRTVRQAGPELPNRPREPSKFFLEGGGGHESCDSGLTGGLREATELRGQPGRWPQAGARARGSAGLAPSVGAGTRWPGEQ", "length": 153, "header": "tr|A0A9J7FA27-1|A0A9J7FA27_CRIGR Isoform 1 of Ragulator complex protein LAMTOR3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lamtor3 PE=4 SV=1 CANONICAL=A0A9J7FA27-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M4Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y5/entry", "sequence": { "sequence": "MADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKVANDSAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSNANTGLIVSLEKELAPLFEELIKVVEVS", "length": 124, "header": "tr|A0A8C2M4Y5-1|A0A9J7FA27_CRIGR Computationally mapped isoform of Ragulator complex protein LAMTOR3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lamtor3 PE=4 SV=1 CANONICAL=A0A9J7FA27-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5J3/entry", "sequence": { "sequence": "MGSSRDRGPLTSRPFSPCSANASTHKKRVQVMGLGKACARSARERLPPRRCWVEANRGAGTSGASPAALGAARRRTVRQAGPELPNRPREPSKFFLEGGGGHESCDSGLTGGLREATELRGQPGRWPQAGARAREQ", "length": 136, "header": "tr|A0A9J7F5J3-1|A0A9J7F5J3_CRIGR Computationally mapped isoform of Ragulator complex protein LAMTOR3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Lamtor3 PE=4 SV=1 CANONICAL=A0A9J7FA27-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FA27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27/entry", "sequence": { "sequence": "MGSSRDRGPLTSRPFSPCSANASTHKKRVQVMGLGKACARSARERLPPRRCWVEANRGAGTSGASPAALGAARRRTVRQAGPELPNRPREPSKFFLEGGGGHESCDSGLTGGLREATELRGQPGRWPQAGARARGSAGLAPSVGAGTRWPGEQ", "length": 153, "header": "tr|A0A9J7FA27-1|A0A9J7FA27_CRIGR Isoform 1 of Ragulator complex protein LAMTOR3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lamtor3 PE=4 SV=1 CANONICAL=A0A9J7FA27-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M4Y5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4Y5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751917", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751917", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of TORC1 signaling", "id": "GO:1904263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904263", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" }, { "name": "cellular response to amino acid stimulus", "id": "GO:0071230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071230", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "kinase activator activity", "id": "GO:0019209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019209", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" }, { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" }, { "name": "Ragulator complex", "id": "GO:0071986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071986", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" }, { "name": "FNIP-folliculin RagC/D GAP", "id": "GO:1990877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990877", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 21, "end_pos": 23 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F730-1", "uniprot_ac": "A0A9J7F730", "uniprot_id": "A0A9J7F730_CRIGR", "mass": { "chemical_mass": 118225.0, "monoisotopic_mass": 118225.0 }, "refseq": { "ac": "XP_016830688", "name": "integrator complex subunit 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830688" }, "gene_names": [ { "name": "Ints3", "type": "recommended", "evidence": [ { "id": "A0A9J7F730", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ] }, { "name": "Ints3", "type": "synonym", "evidence": [ { "id": "XP_016830688", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830688" } ] } ], "protein_names": [ { "name": "Integrator complex subunit 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F730", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730/entry#names_and_taxonomy" } ] }, { "name": "integrator complex subunit 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016830688", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830688" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613854.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830688", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830688" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ints3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730", "locus": {} } ], "crossref": [ { "id": "A0A9J7F730", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F730", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768339", "url": "https://www.ncbi.nlm.nih.gov/gene/100768339", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768339", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768339", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FEQYCLW", "url": "https://omabrowser.org/oma/group/FEQYCLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F730", "url": "https://www.orthodb.org/?gene=A0A9J7F730", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HC14", "url": "https://www.orthodb.org/?gene=G3HC14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13587", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13587", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13587:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13587:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016830688", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830688", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F730-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HC14", "url": "https://www.uniprot.org/uniprotkb/G3HC14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HC14-1", "url": "https://www.uniprot.org/uniprotkb/G3HC14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1043, "header": "tr|A0A9J7F730-1|A0A9J7F730_CRIGR Isoform 1 of Integrator complex subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ints3 PE=3 SV=1 CANONICAL=A0A9J7F730-1" }, "locus": {} }, { "isoform_ac": "G3HC14-1", "url": "https://www.uniprot.org/uniprotkb/G3HC14/entry", "sequence": { "sequence": "MELQKGKGTVAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQTLRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHLSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDVTPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEVTEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNTAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1041, "header": "tr|G3HC14-1|A0A9J7F730_CRIGR Computationally mapped isoform of Integrator complex subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ints3 PE=3 SV=1 CANONICAL=A0A9J7F730-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HC14", "url": "https://www.uniprot.org/uniprotkb/G3HC14" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HC14", "url": "https://www.uniprot.org/uniprotkb/G3HC14" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768339", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768339", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AI04-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEMQKGKGGAAGGGGGKLLLSTLLDAKDELEERLERCVGIVTSLTNGLSEREANDALNAHICKGTPQHEEICLGLFTLVLTEPTQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLMWLLRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAENVLEILTEQREWVLKSSLLIAMAVYTYLRLIVDHHGTAPLQALRQKEVDFCISLLRERFMDCFMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQVLSTQFTGVLQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRLYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTPWLCCALDPLGSAFPASPSSSSRPFALRAVQILDASKSNVAASNAKLALFYDWLFFNPEKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEAHVRQGVFNSLTHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPIEVKIEEPVSMEMDNHMSDKDDSCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETIVEEPVDITPFLDQLDESLKDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSGFSLLLDLLSELYQKQPKIGYHLLYYLKASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCYLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCTWQLFLAHSIPLEAIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWGLKHDDLLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDSLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSSKPPHSVFPPISPPPPPRRHRCADFQTRDVNKGVSTKGWG", "length": 1039 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZUT9-1", "protein_name": "Integrator complex subunit 3", "gene_name": "Ints3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELQKGKGTVAAASSGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQTLRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRSMLREKFPEFCSSPSPPVEASFPEASGILGSTRGYQESFFLYSQVKIEEPVSMEMDNHLSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDVTPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEVTEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETVIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1066 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BN70-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELQKGKGAAAAAASGAAGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILMEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLLRERFMECLMVGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKGHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1040 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SFW4-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MELQKGKGAAAAAASGAAGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTTPLLALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1040 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q1LXC9-1", "protein_name": "Integrator complex subunit 3", "gene_name": "ints3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEPSPAKGKAQGRLLVSTSLDAKDELEERLERCMSITTSITNGLSEREANDALTAHVCKGPQQHEEVCLGLFTLLLTEPPQAQRCYRDLTLVNRDGMNVVLMKINQILMEKFLKLQDVCRTQLVWLVRELVKSGVIGADGVLMTLMKQIAGGDISSKNLWLAENVLDILVDQREWVLKSGMLVAMSLYTYLRLIVDHGTTSLLPLRQREVDFCIGLLRERFMECFIIGRDLVRLLQNVARIPEMELVWRDLLHSPQTLSPQFTGILQLLTSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTAESQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFNPEKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPHFFPPLEGQVRQGVFNSLNFIMEKRVLAHLAPLFDNPKLDRELRSMLRERFPEFCSSPSPPTEVKMEESVPLEMDNHVLDKEDGCYDNTDATFSDDEEELNNKGKKREFRFHQLKETYIDEPSDITPFVDQLDEALKERVLQLQKGSDTETHCEVMQEIVDLILEEDFDSEQMSTLASCLAELFKSHFRGDVLPEEITEESLEESVCKPVCLIFRNLCQMQEDNSGFSVLLDLLAELYQKQPKIGYHLLYYLKASKAASGKMSLYESFAQATALGDLHTCLMMDMKACQEDDVRLLCYLTPSIYSEFPDETLRSGELLNMIVAVIDSAQLQELMCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYSTWQLFLAHSIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPYHQEDQFTTSILRHWTAKHDDLLGEHIKALLIKNNNMPRKRQSLRSSSSKLAQLTLEQMLEHLDSLRLSLSNTKNNFFSQTPILQALQHVQASCDEAHKMRFSDLFSLAEEYEDSSKPPKSRRKAPASSPRSRKGAAPQPCNEEESVSSSASEEEDSKPKASKRKRKGSAVGSDSD", "length": 1017 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68E01-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1043 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7PLS8-1", "protein_name": "Integrator complex subunit 3", "gene_name": "IntS3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEQQQSKNNAHVSKLFICTAVDCKDDIEEKFERSFVTLQMQISGLSDKEMHDMLSQAVCKEKQHEEISIGFLYIMLTDPSMASKTYRDVTLVSRDGMNGIVTNLTFLVAEKYTKLTEVARRQLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVSSRNLFLIESLLDIFIEFRTWLETNPFLVQSTVYSFVRLIEDHANPALLSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQNVARIPEFEQLWRDILFNPKMLHQTFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLASSVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWLISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLCRITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFESPKLDRELRNLIRDNFREFLSPPANHGQLLFTSLHPVQGHILKKESDQRILHCENMDLHETGLINISGTIDEDKKILLVPTDQEIESVFSDETAENLRRVHNIEDNTDDDDDLPLSEVRLKEKPKVELAEAIAESFDAFVTKRNSYTWEAFLKDFRPLPASAFEEFQLNYVISNTVLILRETLPQQNIFSESKTEEKHLAKSISYPLYGLFRFLYENDEKSKKPFQTLLSEICEGIPEIGYLLLYFMKIYCKLQTRKNSQQSYQFKTTIYRQICDAADEKIGNCLLRDLDLLEKENTNIFLWLLPDIYREFKSIATNNTDLLRITLRCIDAKNVRDILYSIAQGKLTIFKQDGLIDCIRQSLEFETYEQFCLWQIVQAHDVPLRCIQDILPELEAGSHPEALSHFLLLLKNEEPTNEIIRLMLSRESKSKGDPFVTSALRFWCQRYEEKLSEIIASLLTSKYPSSSPNKRKRPPKGISVSTSTPSADQVLNHLEHYRRSCRHGTGTGLYVHDMMQRALQSAYSHSNDSTKKQFCDLFALAAEEDTTVGRRGGSGRGRKQPGSKKDVNNHGTSKKNPEMVKTIYSSDDNSSEEDWSKSKILQTAKRRKKANNDSD", "length": 1068 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7TPD0-1", "protein_name": "Integrator complex subunit 3", "gene_name": "Ints3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELQKGKGTVAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQTLRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPEKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRSMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHLSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDVTPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEVTEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1041 }, "evidence": [ { "id": "A0A9J7F730", "url": "https://omabrowser.org/oma/group/A0A9J7F730/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of transcription elongation by RNA polymerase II", "id": "GO:0034243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034243", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "response to ionizing radiation", "id": "GO:0010212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010212", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "snRNA processing", "id": "GO:0016180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016180", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "mitotic G2/M transition checkpoint", "id": "GO:0044818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044818", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "RNA polymerase II transcription initiation surveillance", "id": "GO:0160240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160240", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "integrator complex", "id": "GO:0032039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032039", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "SOSS complex", "id": "GO:0070876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070876", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "INTAC complex", "id": "GO:0160232", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160232", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F730", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 667, "end_pos": 669, "annotation": "n_glycosylation_sequon" }, { "start_pos": 899, "end_pos": 901, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F730", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" }, { "id": "PF10189", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10189" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrator complex subunit 3 N-terminal", "eco_id": "ECO_0000259", "start_pos": 84, "end_pos": 490, "start_aa": "Gln", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F730", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F730" }, { "id": "PF24566", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24566" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ints3-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 581, "end_pos": 974, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 667, "end_pos": 669 }, { "start_pos": 899, "end_pos": 901 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FB32-1", "uniprot_ac": "A0A9J7FB32", "uniprot_id": "A0A9J7FB32_CRIGR", "mass": { "chemical_mass": 135996.0, "monoisotopic_mass": 135996.0 }, "refseq": { "ac": "XP_027252731", "name": "shugoshin 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252731" }, "gene_names": [ { "name": "Sgo2", "type": "recommended", "evidence": [ { "id": "A0A9J7FB32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ] }, { "name": "Sgo2", "type": "synonym", "evidence": [ { "id": "XP_027252731", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252731" } ] } ], "protein_names": [ { "name": "Shugoshin 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FB32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32/entry#names_and_taxonomy" } ] }, { "name": "shugoshin 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027252731", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252731" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252731", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252731" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sgo2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32", "locus": {} } ], "crossref": [ { "id": "A0A9J7FB32", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FB32", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751358", "url": "https://www.ncbi.nlm.nih.gov/gene/100751358", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751358", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751358", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LNWNNEI", "url": "https://omabrowser.org/oma/group/LNWNNEI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FB32", "url": "https://www.orthodb.org/?gene=A0A9J7FB32", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HDC7", "url": "https://www.orthodb.org/?gene=G3HDC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21577", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21577", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21577:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21577:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027252731", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252731", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB32-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HDC7", "url": "https://www.uniprot.org/uniprotkb/G3HDC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HDC7-1", "url": "https://www.uniprot.org/uniprotkb/G3HDC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYTVYFKSWWLLFRMYQFTFMLLLLISTIVSPHPTPILSLPFTLVMEYPVMEVNPVTSGIKRRVKDRIGKTKLNVSLASKIKTKILNNSSIFKISLKHNNRALAQALSREKENSRRITTEKMLLQKEVEKLNFENTFLRLKLNNLNKKLIEIESLVNNNLITAIEMSSLSEFHQSSFLSASKKKRISKQCKSVHLPFARVPLTSENEDDDDGSDDDGDKWKTDCNIRITSKTADTTSSGSRQSFSLHQCNLEVLLPKKENQNTCDSGYSEHTSSVEVLPKEGRDDSDQSLKSSLTEMKTAPSPSFIREKPSLNVTERRKRGSSTADNLYVTDFDYQQITSPGFNRNNKISGCASETRSNLQKNTQCLPDLPSKSASNPNAKHMETVQKTDDFQLQNTLYENADMDLTASEVSKIITISKSNKNQSMKKTDCGKETFRKVKDASSEKKKERSKRKCKGSSEMGAEGKMENGPERGSVVLDGRGDAEDLNCIPSTEQLPQATMLKKITLQSSWDQGNTQNTKRNRTRRTGEQEQGSFSQCAVKLLQDSKFDQCQDTLHCNRNKPSRQTFVIHKSEKDNLFPNQKDEETSNENPEDANEFHRANVSTKDNENVCDYETKTTLDLEKYVSAQQSQSKINKPKQKINRRTKIISSMNQIYEDNDNDKDIRVLEKHNFPLQTQANKETTYGNVEASKEFEAPPLFTRNNENLHDCQTQNVLDLHKQIANMHPAQNESQISKIPRKKVNRKTEIISISVVNHFSNDRGVHCSEKDESFLLKKDKDIPETLKDLSNFEVPAFCNKDSEKLCDYKTQTLLGLRKDDHNMQPSCYNDLKVDKKPRQKVHRKTEIISKTKQIHENDGESVHDPLNKKLCQKVGKSEIVSQMNQIHENINEDMNGFKSYINDQDVMSYCGEINNNKEESCDPIPDACVLVKKHRKKLPGGAKNILTGGKNRHILQLTDSSQKSVALESGVYHDSEGTDSVPGELTNLPKSQRQSTVSTLEDALSMGVEKGESCPAKRVKKLTSKSKKRKTSIDLSSDTHGVVEITSNTDHIQQTDKENYLENEKIAKSKTDFCTKVLKPLSQICSSNIKISSLNDMCESSVPLSICSSKNLMMEENASLESTCIFQVDDDACEKIKERTHKSCRTTEASGIDRGTFQDMMDSSSASSNTENASEGQSAQLMRRKRQCAPLNLREPNLVSKMRR", "length": 1201, "header": "tr|A0A9J7FB32-1|A0A9J7FB32_CRIGR Isoform 1 of Shugoshin 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sgo2 PE=3 SV=1 CANONICAL=A0A9J7FB32-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FB32-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32/entry", "sequence": { "sequence": "MYTVYFKSWWLLFRMYQFTFMLLLLISTIVSPHPTPILSLPFTLVMEYPVMEVNPVTSGIKRRVKDRIGKTKLNVSLASKIKTKILNNSSIFKISLKHNNRALAQALSREKENSRRITTEKMLLQKEVEKLNFENTFLRLKLNNLNKKLIEIESLVNNNLITAIEMSSLSEFHQSSFLSASKKKRISKQCKSVHLPFARVPLTSENEDDDDGSDDDGDKWKTDCNIRITSKTADTTSSGSRQSFSLHQCNLEVLLPKKENQNTCDSGYSEHTSSVEVLPKEGRDDSDQSLKSSLTEMKTAPSPSFIREKPSLNVTERRKRGSSTADNLYVTDFDYQQITSPGFNRNNKISGCASETRSNLQKNTQCLPDLPSKSASNPNAKHMETVQKTDDFQLQNTLYENADMDLTASEVSKIITISKSNKNQSMKKTDCGKETFRKVKDASSEKKKERSKRKCKGSSEMGAEGKMENGPERGSVVLDGRGDAEDLNCIPSTEQLPQATMLKKITLQSSWDQGNTQNTKRNRTRRTGEQEQGSFSQCAVKLLQDSKFDQCQDTLHCNRNKPSRQTFVIHKSEKDNLFPNQKDEETSNENPEDANEFHRANVSTKDNENVCDYETKTTLDLEKYVSAQQSQSKINKPKQKINRRTKIISSMNQIYEDNDNDKDIRVLEKHNFPLQTQANKETTYGNVEASKEFEAPPLFTRNNENLHDCQTQNVLDLHKQIANMHPAQNESQISKIPRKKVNRKTEIISISVVNHFSNDRGVHCSEKDESFLLKKDKDIPETLKDLSNFEVPAFCNKDSEKLCDYKTQTLLGLRKDDHNMQPSCYNDLKVDKKPRQKVHRKTEIISKTKQIHENDGESVHDPLNKKLCQKVGKSEIVSQMNQIHENINEDMNGFKSYINDQDVMSYCGEINNNKEESCDPIPDACVLVKKHRKKLPGGAKNILTGGKNRHILQLTDSSQKSVALESGVYHDSEGTDSVPGELTNLPKSQRQSTVSTLEDALSMGVEKGESCPAKRVKKLTSKSKKRKTSIDLSSDTHGVVEITSNTDHIQQTDKENYLENEKIAKSKTDFCTKVLKPLSQICSSNIKISSLNDMCESSVPLSICSSKNLMMEENASLESTCIFQVDDDACEKIKERTHKSCRTTEASGIDRGTFQDMMDSSSASSNTENASEGQSAQLMRRKRQCAPLNLREPNLVSKMRR", "length": 1201, "header": "tr|A0A9J7FB32-1|A0A9J7FB32_CRIGR Isoform 1 of Shugoshin 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sgo2 PE=3 SV=1 CANONICAL=A0A9J7FB32-1" }, "locus": {} }, { "isoform_ac": "G3HDC7-1", "url": "https://www.uniprot.org/uniprotkb/G3HDC7/entry", "sequence": { "sequence": "MEYPVMEVNPVTSGIKRRVKDRIGKTKLNVSLASKIKTKILNNSSIFKISLKHNNRALAQALSREKENSRRITTEKMLLQKEVEKLNFENTFLRLKLNNLNKKLIEIESLVNNNLITAIEMSSLSEFHQSSFLSASKKKRISKQCKSVHLPFARVPLTSENEDDDDGSDDDGDKWKTDCNIRITSKTADTTSSGSRQSFSLHQCNLEVLLPKKENQNTCDSGYSEHTSSVEVLPKEGRDDSDQSLKSSLTEMKTAPSPSFIREKPSLNVTERRKRGSSTADNLYVTDFDYQQITSPGFNRNNKISGCASETRSNLQKNTQCLPDLPSKSASNPNAKHMETVQKTDDFQLQNTLYENADMDLTASEVSKIITISKSNKNQSMKKTDCGKETFRKVKDASSEKKKERSKRKCKGSSEMGAEGKMENGPERGSVVLDGRGDAEDLNCIPSTEQLPQATMLKKITLQSSWDQGNTQNTKRNRTRRTGEQEQGSFSQCAVKLLQDSKFDQCQDTLHCNRNKPSRQTFVIHKSEKDNLFPNQKDEETSNENPEDANEFHRANVSTKDNENVCDYETKTTLDLEKYVSAQQSQSKINKPKQKINRRTKIISSMNQIYEDNDNDKDIRVLEKHNFPLQTQANKETTYGNVEASKEFEAPPLFTRNNENLHDCQTQNVLDLHKQIANMHPAQNESQISKIPRKKVNRKTEIISISVVNHFSNDRGVHCSEKDESFLLKKDKDIPETLKDLSNFEVPAFCNKDSEKLCDYKTQTLLGLRKDDHNMQPSCYNDLKVDKKPRQKVHRKTEIISKTKQIHENDGESVHDPLNKKLCQKVGKSEIVSQMNQIHENINEDMNGFKSYINDQDVMSYCGEINNNKEESCDPIPDACVLVKKHRKKLPGGAKNILTGGKNRHILQLTDSSQKSVALESGVYHDSEGTDSVPGELTNLPKSQRQSTVSTLEDALSMGVEKGESCPAKRVKKLTSKSKKRKTSIDLSSDTHGVVEITSNTDHIQQTDKENYLENEKIAKSKTDFCTKVLKPLSQICSSNIKISSLNDMCESSVPLSICSSKNLMMEENASLESTCIFQVDDDACEKIKERTHKSCRTTEASGIDRGTFQDMMDSSSASSNTENASEGQSAQLMRRKRQCAPLNLREPNLVSKMRR", "length": 1156, "header": "tr|G3HDC7-1|A0A9J7FB32_CRIGR Computationally mapped isoform of Shugoshin 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sgo2 PE=3 SV=1 CANONICAL=A0A9J7FB32-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 35, "start_aa": "Thr", "end_pos": 35, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr35", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HDC7", "url": "https://www.uniprot.org/uniprotkb/G3HDC7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HDC7", "url": "https://www.uniprot.org/uniprotkb/G3HDC7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751358", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751358", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZWI4-1", "protein_name": "Shugoshin 2", "gene_name": "Sgo2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEYPGIEDDSVSSGIKRRVKDRIAKTKLNVSLASKIKTKILNNSSIFKISLKHNNRALARALSKEKENSRRITTEKVQLQKEVEKLNFENTFLRLKLNNLNKKLIEIESQVSNSLLTAIEMSSLSEFHQSSFLLSANKKKRVSKQCKPAHLPYARVLITSENDDDDDDGDDDKWKTKCNNRTVSKTSPDSTSSVSRQSLSLHQCNLEVFLPQEDNQKTCESGHSEYTSSVDVLPNESHYHSDQSPKSFLSKMKDAPSPSPIKEKLSLGNVTKRKKCVSSAADILHVADLDHQSISSPGSNWNNEINGCTNETSNNVQRNTECFPDLPSESSSGPNVKCMEQVQKNTDTFHLQKTVYEDADMELTATDIGKIVTISKSNKSQNKKKADCRKETFRKVKGPSSDRKKERSKRKCKASSEGAEGKTENRPERGSGVLDGRGDSEDPNCISNSEQPSQVNMQKEITFQKSSDQENVQNQRRRQTYTTDEQEETNPFSRCSVKFLQDGKFDPYQNTLHCDLSKPSRQTFVIQTSEKDNLLPNQDNKENISENLEDANEFHIAHLSIKDNENVCDHETQTILDLKKNVNAQQNQTKINKTKQKINRRTKIISITNQINEDNDKDIHVLEKGNFPFQTQANKETTSGNLEASKEFETPLYTRDSGSLHDCNTQNVLDLHKQITSIYPGQNKSQISKIPRQKLSRKTEVISEVNCFSNDRDVLCSEKDESFLLQKDKEIPGTLKDVSEFDKPAFYNKDSVKSCDFKAEPLLGLKRHDPNMPPACQADSKVDKKLRQKVKRKTEIISKINQIHKNDEGSAHDPLNKELRQKVSISKIISEMNQIYETINEDGNAFKSSLKHCQDVMSCDFGKKTSNEEENHDLTPDLCSLVKKPRKKVSCKAGNSLTGDKNRCILQLTGSSQESVTLDSGLKHGPNEADSGPGEQTNLPKKQKPSTVSTLGDAFSLSVVREGSHPAQTGSKVTSKSKKRKTPLRSSDTRGAVERTPNTDGITAVYFQQTEKENYLENEKIAKSKPDFRSKVLKPLSEICSSNIKNSSLGSMCESSVPLSTFSSKPLMLEESSSLDSTCIFPVGDGAHEKLKEGTPNPRRTQKSRPGSRTSLVLVDNSSVSSNTANPENESERHSSHQMRRKRQCTPLNLTEPSLRRQVLQYW", "length": 1163 }, "evidence": [ { "id": "A0A9J7FB32", "url": "https://omabrowser.org/oma/group/A0A9J7FB32/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BLA0-1", "protein_name": "Shugoshin 2", "gene_name": "SGO2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEYPAMETSSLFTSGIKKHVKDRRISKTTKLNVSLASKIKTKIINNSSIFKISLKHNNRALALALSRERENSRRITTEKMLLQKEVDKLNFENTFLRLKLNNLNKKLIEIEALMNNNLITAIEMSALSEFHQSPFLLPSSKKKRVSKQCKLTRLPFARVPLTSNDDDDEDKEKIQCDDITISKTSPDSPSLVSARPVSTQNNLRLLFVKENDQNVCSVNDSEHVSSIVDTLPKGNHSHSDQSSRSSLTSEKKNAQAISHKKEKSSPSNVTKRKKRVSSWESDNPADTPCVTDLDQQQVSSPILNWNNEIKDYTNETNTMQRNILCLPASSESASEPPTKGMNPLQGNDFQLQKTVYDDDMDLTASEVSKIITVSTGTKKKRKKNSDDCGMKTFRKVKDPSSEKKRERSKRQFKNCSGANIEEKIESGPEDRSVDLDGEGDSRDPNFIFSTEQLTQLNTWKKITLPNGFDQGDKQSMQCNQKKKRIHVTDEQEETYSFSQSSDKFPQDSKFDLCPSSLTCKKSKASRQTFVIHTLEKDNLFPNQKVQETTSENLGVTNEFQTAYLSNKGNPKLCDDETQNMFDLKKHVTDTQPTQQNESKINKDWQKINRKTEIISKMNQILGDNTKDVQGPEKGNFSFQTQEDKETISRNLDVSNEFQKSVLSTVNNGNLCDCETQNVLGLQKQITYAYPVQQNESRINKTLKQKVNRKTEIISTVNHLDNTSEYCPEKGKEIIPENPLDTHEFQTPTLSSKDSRDLYDYDTQNVLGLKMNVHDIQPACQNESKIDKLRQKVCRKTKIISEVNQIYMSDDKGRHDPEKGNLLSLIQKDKEIIPENLEDTNEFQIVDPSPGVNRNLCDYETQNLLGVKKCVTDTGKQKESKINKRPRQKVSRKTEIILEINRKNEFNNKGICDPEKGDFSLTPNNEETIAENLKVTHEFQTIYLSTKDDGHLYDYKTQNMLDLTKHVTDKQPTRQNESKINKNLKQKQKVNRKTEIISEMCQIYEVNDKDVHGQESYTKNLDFKINKQRPEGQAVSGYCMEINSDEKENCDEISNPYKPIKKHGKESDKAKNILAKSDNMPVLQLTGSSQMSVLNLGLKHITDEADSDTGNHMEPHRSPKLSTKTLNRKRKSHFVEVTKEGECQVKKVNKMTSKSKKRKTFEDPSLDSHELVEMMSDTIQEVPVEPEYTVKGKKLENVETVKIKPDFYTKMLIPLSQMYSPSRQDSSRNSVLEGSVPLSISSNKNLKENFAPESSPIFQLSDEVHEKMKDMKFKVDQRPQRSEIGVRMLQDLTNTSFVSNTAAKFENKVEDLSSELPSRRRRCTPLSLKEPSLKGKMRR", "length": 1338 }, "evidence": [ { "id": "A0A9J7FB32", "url": "https://omabrowser.org/oma/group/A0A9J7FB32/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q562F6-1", "protein_name": "Shugoshin 2", "gene_name": "SGO2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MECPVMETGSLFTSGIKRHLKDKRISKTTKLNVSLASKIKTKILNNSSIFKISLKHNNRALAQALSREKENSRRITTEKMLLQKEVEKLNFENTFLRLKLNNLNKKLIDIEALMNNNLITAIEMSSLSEFHQSSFLLSASKKKRISKQCKLMRLPFARVPLTSNDDEDEDKEKMQCDNNIKSKTLPDIPSSGSTTQPLSTQDNSEVLFLKENNQNVYGLDDSEHISSIVDVPPRESHSHSDQSSKTSLMSEMRNAQSIGRRWEKPSPSNVTERKKRGSSWESNNLSADTPCATVLDKQHISSPELNCNNEINGHTNETNTEMQRNKQDLPGLSSESAREPNAECMNQIEDNDDFQLQKTVYDADMDLTASEVSKIVTVSTGIKKKSNKKTNEHGMKTFRKVKDSSSEKKRERSKRQFKNSSDVDIGEKIENRTERSDVLDGKRGAEDPGFIFNNEQLAQMNEQLAQVNELKKMTLQTGFEQGDRENVLCNKKEKRITNEQEETYSLSQSSGKFHQESKFDKGQNSLTCNKSKASRQTFVIHKLEKDNLLPNQKDKVTIYENLDVTNEFHTANLSTKDNGNLCDYGTHNILDLKKYVTDIQPSEQNESNINKLRKKVNRKTEIISGMNHMYEDNDKDVVHGLKKGNFFFKTQEDKEPISENIEVSKELQIPALSTRDNENQCDYRTQNVLGLQKQITNMYPVQQNESKVNKKLRQKVNRKTEIISEVNHLDNDKSIEYTVKSHSLFLTQKDKEIIPGNLEDPSEFETPALSTKDSGNLYDSEIQNVLGVKHGHDMQPACQNDSKIGKKPRLNVCQKSEIIPETNQIYENDNKGVHDLEKDNFFSLTPKDKETISENLQVTNEFQTVDLLIKDNGNLCDYDTQNILELKKYVTDRKSAEQNESKINKLRNKVNWKTEIISEMNQIYEDNDKDAHVQESYTKDLDFKVNKSKQKLECQDIINKHYMEVNSNEKESCDQILDSYKVVKKRKKESSCKAKNILTKAKNKLASQLTESSQTSISLESDLKHITSEADSDPGNPVELCKTQKQSTTTLNKKDLPFVEEIKEGECQVKKVNKMTSKSKKRKTSIDPSPESHEVMERILDSVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVPLSVSSGKNVIIKENFALECSPAFQVSDDEHEKMNKMKFKVNRRTQKSGIGDRPLQDLSNTSFVSNNTAESENKSEDLSSERTSRRRRCTPFYFKEPSLRDKMRR", "length": 1265 }, "evidence": [ { "id": "A0A9J7FB32", "url": "https://omabrowser.org/oma/group/A0A9J7FB32/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TSY8-1", "protein_name": "Shugoshin 2A", "gene_name": "Sgo2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEYPGIKVDTVTSGIQRRVKGRIAKTNLNVSLASKIKAKILNNSSIFKISLKHNNRALARALSKEKENSRRITTEKMQLQKEVEKLNFENTFLRLKLNTLNKKLVEIESHVSNDLLTAIEISSLSEFHQGSFLLSATKKQRNSKQCKPAHLPYARVLLTSENDDDDGADDKWQTKCNNRTISKTSPDSTSSVSRQPSSLHQCNLKAFPPKEDNQKTCGSGHLEHTSSVDILPNESHSDQSPKSSLSEMKTAPSPSLRREKLSHGNVTMRKKCVSSTPDILYVTDLDHQPTSSPGSNWNNEIHGHTNETSNNTQRNAECFLDLPSESSSEPDAKRMELVQKNTDSFHFQKTVYDAADMELTATDIGKIVAVSKSKKNQNKKKADCRKETFRKVKGASSDKKRESSKRECKDGSEVGAEEEADAARAERGAGVLDGRGDSEEPNCISSTEQPSQVNTQKKRTLQNSSDQENIQNTKRRQTYTTDEQEETNPFSRHSVKFLQDGKFDLCQKTLHHNLSKPSRQTFVIRKSEKDNLFPNQEDKDTISENLEVTNEFHIDDLSIEANENVCDHETQTMLDLKKSVSAQQNQTKINKTKQKINRRTKIISVMSQVYEDNDKDIHVLEKDNFPFHTQANKETTSGNLESSKEFESPLLFTRDNGSLRDCKTQNVLDLHKQIPDLYPDRNESQISKIPRQKVNRKTEVISGVKCFSNDQGVHCSEKDKSLLLQKDKDFPGTLKDLSEFDTPAFCNKDSAKSCDYKSEMLLGLKKHDPNMQPACQDDSKAGKKLRQKVNRKTEIISKITQIHENDRGSTHDSLNKKLCQKVNISKIISQMNQIYETINEDGNGFKSSIKDCEDIKSCDFGEINSNKKENYDPIQDPCTLVKKTKRKGSCKAGSSLAGAKNRCGLQLTDSSQVQSVPLDSGLRHHPNEADSGPGEQTNLPKMQKQSAGRSLGDAFSVSLGKEGSRPAKAVSKMTPKSKKRKLPLGCSPETHGTVEITPNTDLAKAVDSQQTEKENYLEKEKIAKRKPDFCTKVLKPLSETCSSNIKNSSLDSMCKSSLPLSISSRKTLMLEESSSLESTCIFQVGDAAHEKITTGTRNPHHRTQKSTPGSRTSLVLVDTSSVSDTNPANPENESEGQSSHPMRRKRQCVPLNLTEPSLRSKMRR", "length": 1164 }, "evidence": [ { "id": "A0A9J7FB32", "url": "https://omabrowser.org/oma/group/A0A9J7FB32/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitotic cohesin complex", "id": "GO:0030892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chromosome segregation", "id": "GO:0007059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007059", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ], "pmid": "" }, { "name": "meiotic sister chromatid cohesion", "id": "GO:0051177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051177", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1114, "end_pos": 1116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1169, "end_pos": 1171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 601, "end_pos": 603, "annotation": "n_glycosylation_sequon" }, { "start_pos": 729, "end_pos": 731, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 35 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1114, "end_pos": 1116 }, { "start_pos": 1169, "end_pos": 1171 }, { "start_pos": 313, "end_pos": 315 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 522, "end_pos": 524 }, { "start_pos": 601, "end_pos": 603 }, { "start_pos": 729, "end_pos": 731 }, { "start_pos": 74, "end_pos": 76 }, { "start_pos": 87, "end_pos": 89 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FEC7-1", "uniprot_ac": "A0A9J7FEC7", "uniprot_id": "A0A9J7FEC7_CRIGR", "mass": { "chemical_mass": 16092.0, "monoisotopic_mass": 16092.0 }, "refseq": { "ac": "XP_007639780", "name": "small integral membrane protein 12 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639780" }, "gene_names": [ { "name": "Smim12", "type": "recommended", "evidence": [ { "id": "A0A9J7FEC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7" } ] }, { "name": "Smim12", "type": "synonym", "evidence": [ { "id": "XP_007639780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639780" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 12", "type": "recommended", "evidence": [ { "id": "A0A9J7FEC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 12 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007639780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639780" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613817.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639780", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639780" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smim12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FEC7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FEC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765711", "url": "https://www.ncbi.nlm.nih.gov/gene/100765711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765711", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765711", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YHLEWFL", "url": "https://omabrowser.org/oma/group/YHLEWFL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FEC7", "url": "https://www.orthodb.org/?gene=A0A9J7FEC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28599:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28599:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15990", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15990", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639780", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639780", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FEC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9T7", "url": "https://www.uniprot.org/uniprotkb/G3H9T7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9T7-1", "url": "https://www.uniprot.org/uniprotkb/G3H9T7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEILPSSLTIEFFTTSWSISGTQLLHKAQQPLAALWGSCSITNAQLPDVMWPVLWSVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSILERREDRKLNELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 141, "header": "tr|A0A9J7FEC7-1|A0A9J7FEC7_CRIGR Isoform 1 of Small integral membrane protein 12 OS=Cricetulus griseus OX=10029 GN=Smim12 PE=3 SV=1 CANONICAL=A0A9J7FEC7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FEC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7/entry", "sequence": { "sequence": "MEILPSSLTIEFFTTSWSISGTQLLHKAQQPLAALWGSCSITNAQLPDVMWPVLWSVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSILERREDRKLNELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 141, "header": "tr|A0A9J7FEC7-1|A0A9J7FEC7_CRIGR Isoform 1 of Small integral membrane protein 12 OS=Cricetulus griseus OX=10029 GN=Smim12 PE=3 SV=1 CANONICAL=A0A9J7FEC7-1" }, "locus": {} }, { "isoform_ac": "G3H9T7-1", "url": "https://www.uniprot.org/uniprotkb/G3H9T7/entry", "sequence": { "sequence": "MWPVLWSVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSILERREDRKLNELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 92, "header": "tr|G3H9T7-1|A0A9J7FEC7_CRIGR Computationally mapped isoform of Small integral membrane protein 12 OS=Cricetulus griseus OX=10029 GN=Smim12 PE=3 SV=1 CANONICAL=A0A9J7FEC7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H9T7", "url": "https://www.uniprot.org/uniprotkb/G3H9T7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H9T7", "url": "https://www.uniprot.org/uniprotkb/G3H9T7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765711", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765711", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8W4FEK3-1", "protein_name": "Small integral membrane protein 12", "gene_name": "SMIM12", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSISERREDRKLDELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 92 }, "evidence": [ { "id": "A0A9J7FEC7", "url": "https://omabrowser.org/oma/group/A0A9J7FEC7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A5PJ82-1", "protein_name": "Small integral membrane protein 12", "gene_name": "SMIM12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKEPQPVEEEKSISERREDRKLDELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 92 }, "evidence": [ { "id": "A0A9J7FEC7", "url": "https://omabrowser.org/oma/group/A0A9J7FEC7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4ACP2-1", "protein_name": "Small integral membrane protein 12", "gene_name": "Smim12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSILERREDRKLDEMLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 92 }, "evidence": [ { "id": "A0A9J7FEC7", "url": "https://omabrowser.org/oma/group/A0A9J7FEC7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5BKW8-1", "protein_name": "Small integral membrane protein 12", "gene_name": "smim12", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MWPIFWTAMRTYAPYVTFPVAFVVGAVGYHLEWFIRGTPNTPGEERGIAELREDRKLEELNGRDSTQVLSLKDKLEFTPRAVLERNRAVKS", "length": 91 }, "evidence": [ { "id": "A0A9J7FEC7", "url": "https://omabrowser.org/oma/group/A0A9J7FEC7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q78RX3-1", "protein_name": "Small integral membrane protein 12", "gene_name": "Smim12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKTPQPVEEEKSILERREDRKLDEMLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 92 }, "evidence": [ { "id": "A0A9J7FEC7", "url": "https://omabrowser.org/oma/group/A0A9J7FEC7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96EX1-1", "protein_name": "Small integral membrane protein 12", "gene_name": "SMIM12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWPVFWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSISERREDRKLDELLGKDHTQVVSLKDKLEFAPKAVLNRNRPEKN", "length": 92 }, "evidence": [ { "id": "A0A9J7FEC7", "url": "https://omabrowser.org/oma/group/A0A9J7FEC7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F7U3-1", "uniprot_ac": "A0A9J7F7U3", "uniprot_id": "A0A9J7F7U3_CRIGR", "mass": { "chemical_mass": 36589.0, "monoisotopic_mass": 36589.0 }, "refseq": { "ac": "XP_016830897", "name": "tRNA wybutosine-synthesizing protein 5 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830897" }, "gene_names": [ { "name": "Tyw5", "type": "recommended", "evidence": [ { "id": "A0A9J7F7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ] }, { "name": "Tyw5", "type": "synonym", "evidence": [ { "id": "XP_016830897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830897" } ] } ], "protein_names": [ { "name": "tRNA wybutosine-synthesizing protein 5 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_016830897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830897" }, { "id": "A0A9J7F7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613874.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830897" } ] }, { "annotation": "tRNA hydroxylase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the hydroxylation of 7-(a-amino-a-carboxypropyl)wyosine (yW-72) into undermodified hydroxywybutosine (OHyW*). OHyW* being further transformed into hydroxywybutosine (OHyW) by LCMT2/TYW4. OHyW is a derivative of wybutosine found in higher eukaryotes.", "evidence": [ { "database": "UniProtKB", "id": "G3HDC3", "url": "https://www.uniprot.org/uniprotkb/G3HDC3#function" }, { "database": "UniProtKB", "id": "ARBA00054171", "url": "https://www.uniprot.org/uniprotkb/ARBA00054171#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tyw5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3", "locus": {} } ], "crossref": [ { "id": "A0A9J7F7U3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F7U3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773600", "url": 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[ "Protein" ] }, { "id": "A0A9J7F7U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HDC3", "url": "https://www.uniprot.org/uniprotkb/G3HDC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HDC3-1", "url": "https://www.uniprot.org/uniprotkb/G3HDC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEQCLPVPRLRGVTREHFMEHLYPQRMPLVLEGLDLGSCTSKWTVGYLSQAGGTKEVKVHVAAVPQMNFIKLYRLTNWSREQPKKHIKNSSFQRMRNTTYGLLEKTQGSLFVCLSMQDVADIRQQFPSLGGDIKFPIFFEEGQFFSSVFRISSPGLQLWTHYDVMDNFLIQVTGKKRVILFSPRDAHYLYLSGSKSEVLDIDSPDLDKYPLFPKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNVFWKHLPSECYDKTDTYGNKDPVAASRAVQILDRALKTLAELPEEYRDFYARQMVLRIQDKAYSKNFK", "length": 317, "header": "tr|A0A9J7F7U3-1|A0A9J7F7U3_CRIGR Isoform 1 of tRNA wybutosine-synthesizing protein 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tyw5 PE=4 SV=1 CANONICAL=A0A9J7F7U3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F7U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3/entry", "sequence": { "sequence": "MAEQCLPVPRLRGVTREHFMEHLYPQRMPLVLEGLDLGSCTSKWTVGYLSQAGGTKEVKVHVAAVPQMNFIKLYRLTNWSREQPKKHIKNSSFQRMRNTTYGLLEKTQGSLFVCLSMQDVADIRQQFPSLGGDIKFPIFFEEGQFFSSVFRISSPGLQLWTHYDVMDNFLIQVTGKKRVILFSPRDAHYLYLSGSKSEVLDIDSPDLDKYPLFPKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNVFWKHLPSECYDKTDTYGNKDPVAASRAVQILDRALKTLAELPEEYRDFYARQMVLRIQDKAYSKNFK", "length": 317, "header": "tr|A0A9J7F7U3-1|A0A9J7F7U3_CRIGR Isoform 1 of tRNA wybutosine-synthesizing protein 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tyw5 PE=4 SV=1 CANONICAL=A0A9J7F7U3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCC9/entry", "sequence": { "sequence": "MAEQCLPVPRLRGVTREHFMEHLYPQRMPLVLEGLDLGSCTSKWTVGYLSQAGGTKEVKVHVAAVPQMNFISKNFVYRTLPFNKLVQRAAEETHKEFFISEDEKYYLRSLGEDPRKDVADIRQQFPSLGGDIKFPIFFEEGQFFSSVFRISSPGLQLWTHYDVLNLKCWILTALTWINTHSSLRRGALWFHNVISEEFGVGVNVFWKHLPSECYDKTDTYGNKDPVAASRAVQILDRALKTLAELPEEYRDFYARQMVLRIQDKAYSKNFK", "length": 271, "header": "tr|A0A9J7JCC9-1|A0A9J7JCC9_CRIGR Computationally mapped isoform of tRNA wybutosine-synthesizing protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tyw5 PE=4 SV=1 CANONICAL=A0A9J7F7U3-1" }, "locus": {} }, { "isoform_ac": "G3HDC3-1", "url": "https://www.uniprot.org/uniprotkb/G3HDC3/entry", "sequence": { "sequence": "MAEQCLPVPRLRGVTREHFMEHLYPQRMPLVLEGLDLGSCTSKWTVGYLSQAGGTKEVKVHVAAVPQMNFISKNFVYRTLPFNKLVQRAAEETHKEFFISEDEKYYLRSLGEDPRKDVADIRQQFPSLGGDIKFPIFFEEGQFFSSVFRISSPGLQLWTHYDVMDNFLIQVTGKKRVILFSPRDAHYLYLSGSKSEVLDIDSPDLDKYPLFPKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNVFWKHLPSECYDKTDTYGNKDPVAASRAVQILDRALKTLAELPEEYRDFYARQMVLRIQDKAYSKNFK", "length": 315, "header": "tr|G3HDC3-1|A0A9J7F7U3_CRIGR Computationally mapped isoform of tRNA wybutosine-synthesizing protein 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tyw5 PE=4 SV=1 CANONICAL=A0A9J7F7U3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HDC3", "url": "https://www.uniprot.org/uniprotkb/G3HDC3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HDC3", "url": "https://www.uniprot.org/uniprotkb/G3HDC3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773600", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZX53-1", "protein_name": "tRNA wybutosine-synthesizing protein 5", "gene_name": "TYW5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERREQPAVQVPSLDGVTRERFLRDVYPRREPVVLKGMELGPCTTKWTVDYLSQAAGSKEVKIHVSAVPQMDFLSKNFVYRTLPFDVFVRRAAEVKHKDYFLSEDEKYYLRSVGEDVRKDIADIRKQFPVLAEDVQIPEYFEKEQFFSSVFRISSAGLQLWTHYDVMDNFLIQVTGRKRVVLYSPRDVPYLYLSGTKSEVLDVDNPDFEKYPLFAKAKRYQCYLEAGDVLFIPAMWFHNVISEEFGVALNVFWKHLPAECYDKSDTYGNKDPTAASRAIQILDRALKTLEELPEEYRDFYARRMVLRIQEKAYRNDNG", "length": 318 }, "evidence": [ { "id": "A0A9J7F7U3", "url": "https://omabrowser.org/oma/group/A0A9J7F7U3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2RSX7-1", "protein_name": "tRNA wybutosine-synthesizing protein 5", "gene_name": "Tyw5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEQRLPVPRLRGVSREQFMEHLYPQRKPLVLEGLDLGSCTSKWTVDYLSQVGGTKEVKIHVAAVPQMDFISKNFVYRTLPFNKLVQRAAEETHKEFFISEDEKYYLRSLGEDPRKDVADIRQQFPSLGGDITFPMFFREEQFFSSVFRISSPGLQLWTHYDVMDNFLIQVTGKKRITLFNPRDAQYLYLSGSKSEVLNIDSPDLDKYPLFPKARRYECSLEAGDVLFIPALWFHNVVSEEFGVGVNIFWKHLPSECYDTTDTYGNKDPVAASRAVQILDRALKTLAELPEEYRDFYARQMVLRIQDKAYSKNFE", "length": 315 }, "evidence": [ { "id": "A0A9J7F7U3", "url": "https://omabrowser.org/oma/group/A0A9J7F7U3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2RUC4-1", "protein_name": "tRNA wybutosine-synthesizing protein 5", "gene_name": "TYW5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGQHLPVPRLEGVSREQFMQHLYPQRKPLVLEGIDLGPCTSKWTVDYLSQVGGKKEVKIHVAAVAQMDFISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSECYDKTDTYGNKDPTAASRAAQILDRALKTLAELPEEYRDFYARRMVLHIQDKAYSKNSE", "length": 315 }, "evidence": [ { "id": "A0A9J7F7U3", "url": "https://omabrowser.org/oma/group/A0A9J7F7U3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZY75-1", "protein_name": "tRNA wybutosine-synthesizing protein 5", "gene_name": "Tyw5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEQRLPVPRLRGVSREQFMEHLYPQRKPLVLEGLDLGSCTSKWTVDYLSQVGGTKEVKIHVAAVAQMDFISKNFVYRTLPFNKLVQRAAEETHKEFFISQDERYYLRSLGEDPRKVRVVDLKQSLKMSDIADIRQQFPSLGEDITFPMFFREEQFFSSVFRISSPGLQLWTHYDVMDNFLIQVTGKKRITLFSPRDAQYLYLSGSKSEVLNIDSPDLDKYPLFPKARRYECSLEAGDVLFIPALWFHNVVSEEFGVGVNVFLKHLPSECYDTTDTYGNKDPVAASRAMQILDRALKTLAELPEEYRDFYARQMVLRIQDKAYSKNSE", "length": 328 }, "evidence": [ { "id": "A0A9J7F7U3", "url": "https://omabrowser.org/oma/group/A0A9J7F7U3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MKS9-1", "protein_name": "tRNA wybutosine-synthesizing protein 5", "gene_name": "TYW5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGHGFPVPRFEGVSQEQFIEHLYPQRKPLVLEGIDLGACTSKWTVDYLSQVGGRKEVKIHVAAVAQMDFISKNFVYRTLPFDKLVLRAAEEKHTEFFISEDEKYYLRSLGEDPRKDVADIRKQFPLLEGDIKFPKFFKEEQFFSSVFRISSPGLQLWTHYDVMDNFLIQVTGKKRVVLFSPRDAQYLYLSGSKSEVLNIDNPDLAKYPLFSKARRYECSLKAGDVLFIPALWFHNVISEEFGVGVNVFWKHLPSECYDKTDTYGNKDLTAASRAVQILDRALKTLGELPEEYRDFYARRMVLHIQDKAYSKNFE", "length": 315 }, "evidence": [ { "id": "A0A9J7F7U3", "url": "https://omabrowser.org/oma/group/A0A9J7F7U3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SI72-1", "protein_name": "tRNA wybutosine-synthesizing protein 5", "gene_name": "TYW5", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQRFLVPRLEGVSQEQFTEHLYPQRKPLVLEGIDLGACTSKWTVDYLSQVGGRKEVKIHVAAVAQMDFISKNFVYRTLPFDKLVQRAAEEKHKEFFISEDEKYYLRSLGEDPRKDVADIRKQFPLLEGDIKFPKFFKEEQFFSSVFRISSPGLQLWTHYDVMDNFLIQVTGKKRVVLFSPRDAQYLYLSGSKSEVLNIDNPDLAKYPLFSKARWYECSLKAGDVLFIPALWFHNVVSEEFGVGVNVFWKHLPSECYDKTDTYGNKDPTAASRAAQILDRALKTLGELPEEYRDFYARRMVLHIQDKAYSKNFE", "length": 315 }, "evidence": [ { "id": "A0A9J7F7U3", "url": "https://omabrowser.org/oma/group/A0A9J7F7U3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ], "pmid": "" }, { "name": "tRNA(Phe) (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity", "id": "GO:0102524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "wybutosine biosynthetic process", "id": "GO:0031591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031591", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "37899", "name": "", "equation": "7-[(3S)-3-amino-3-carboxypropyl]wyosine(37) in tRNA(Phe) + 2-oxoglutarate + O2 = 7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine(37) in tRNA(Phe) + succinate + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A9J7F7U3-1" ], "evidence": [ { "id": "37899", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/37899" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A9J7F7U3", "gene_name": "Tyw5", "activity": [ { "ec_number": "1.14.11.42", "activity": "7-[(3S)-3-amino-3-carboxypropyl]wyosine(37) in tRNA(Phe) + 2-oxoglutarate + O2 = 7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine(37) in tRNA(Phe) + succinate + CO2.", "evidence": [ { "id": "A0A9J7F7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ] }, { "ec_number": "1.14.11.42", "activity": "", "evidence": [ { "id": "A0A9J7F7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U3" }, { "id": "PS51184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjC", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 269, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "1.14.11.42", "ec_name": "7-[(3S)-3-amino-3-carboxypropyl]wyosine(37) in tRNA(Phe) + 2-oxoglutarate + O2 = 7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine(37) in tRNA(Phe) + succinate + CO2.", "evidence": [ { "id": "1.14.11.42", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:1.14.11.42" }, { "id": "1.14.11.42", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=1.14.11.42" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 78, "end_pos": 80 }, { "start_pos": 90, "end_pos": 92 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F8W2-1", "uniprot_ac": "A0A9J7F8W2", "uniprot_id": "A0A9J7F8W2_CRIGR", "mass": { "chemical_mass": 13990.0, "monoisotopic_mass": 13990.0 }, "refseq": { "ac": "XP_016831547", "name": "small integral membrane protein 19 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831547" }, "gene_names": [ { "name": "Smim19", "type": "recommended", "evidence": [ { "id": "A0A9J7F8W2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2" } ] }, { "name": "Smim19", "type": "synonym", "evidence": [ { "id": "XP_016831547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831547" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 19", "type": "recommended", "evidence": [ { "id": "A0A9J7F8W2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 19 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016831547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831547" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613958.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016831547.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016831547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831547" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smim19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2", "locus": {} } ], "crossref": [ { "id": "A0A9J7F8W2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F8W2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773607", "url": "https://www.ncbi.nlm.nih.gov/gene/100773607", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029368", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029368", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773607", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773607", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F8W2", "url": "https://www.orthodb.org/?gene=A0A9J7F8W2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HHK2", "url": "https://www.orthodb.org/?gene=G3HHK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31888", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31888", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31888:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31888:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15117", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15117", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016831547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831547", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HHK2", "url": "https://www.uniprot.org/uniprotkb/G3HHK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HHK2-1", "url": "https://www.uniprot.org/uniprotkb/G3HHK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSFLRERVKAYPMAGSYGVMGDDGSMDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPSEETLSEPNFYDTMSKIRLRQQLEMHSISRKYEYQQPQSQADSVQLSLE", "length": 120, "header": "tr|A0A9J7F8W2-1|A0A9J7F8W2_CRIGR Isoform 1 of Small integral membrane protein 19 OS=Cricetulus griseus OX=10029 GN=Smim19 PE=3 SV=1 CANONICAL=A0A9J7F8W2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2/entry", "sequence": { "sequence": "MSSFLRERVKAYPMAGSYGVMGDDGSMDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPSEETLSEPNFYDTMSKIRLRQQLEMHSISRKYEYQQPQSQADSVQLSLE", "length": 120, "header": "tr|A0A9J7F8W2-1|A0A9J7F8W2_CRIGR Isoform 1 of Small integral membrane protein 19 OS=Cricetulus griseus OX=10029 GN=Smim19 PE=3 SV=1 CANONICAL=A0A9J7F8W2-1" }, "locus": {} }, { "isoform_ac": "G3HHK2-1", "url": "https://www.uniprot.org/uniprotkb/G3HHK2/entry", "sequence": { "sequence": "MAGSYGVMGDDGSMDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRKIMRIFSVPPSEETLSEPNFYDTMSKIRLRQQLEMHSISRKYEYQQPQSQADSVQLSLE", "length": 107, "header": "tr|G3HHK2-1|A0A9J7F8W2_CRIGR Computationally mapped isoform of Small integral membrane protein 19 OS=Cricetulus griseus OX=10029 GN=Smim19 PE=3 SV=1 CANONICAL=A0A9J7F8W2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HHK2", "url": "https://www.uniprot.org/uniprotkb/G3HHK2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HHK2", "url": "https://www.uniprot.org/uniprotkb/G3HHK2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773607", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773607", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FG85-1", "uniprot_ac": "A0A9J7FG85", "uniprot_id": "A0A9J7FG85_CRIGR", "mass": { "chemical_mass": 138414.0, "monoisotopic_mass": 138414.0 }, "refseq": { "ac": "XP_007608980", "name": "SCL-interrupting locus protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608980" }, "gene_names": [ { "name": "Stil", "type": "recommended", "evidence": [ { "id": "A0A9J7FG85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ] }, { "name": "Stil", "type": "synonym", "evidence": [ { "id": "XP_007608980", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608980" } ] } ], "protein_names": [ { "name": "SCL-interrupting locus protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007608980", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608980" }, { "id": "A0A9J7FG85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613647.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007608980", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608980" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Stil", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85", "locus": {} } ], "crossref": [ { "id": "100759008", "url": "https://www.ncbi.nlm.nih.gov/gene/100759008", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057731", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058559", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058559", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759008", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759008", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CKCGYLT", "url": "https://omabrowser.org/oma/group/CKCGYLT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FF25", "url": "https://www.orthodb.org/?gene=A0A9J7FF25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FG85", "url": "https://www.orthodb.org/?gene=A0A9J7FG85", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JG05", "url": "https://www.orthodb.org/?gene=A0A9J7JG05", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GYT4", "url": "https://www.orthodb.org/?gene=G3GYT4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15128", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15128", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15128:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15128:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15253", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15253", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26399", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26399", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007608980", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007608980", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FF25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FF25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FG85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG05", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG05-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GYT4", "url": "https://www.uniprot.org/uniprotkb/G3GYT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GYT4-1", "url": "https://www.uniprot.org/uniprotkb/G3GYT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTRFTSSKMVPFHFPPSKLALWNPMPIGGFIYLHLSYYRKPKLVVTEKAIRLAYRHAKQNKKNVPCFLLGSLTVDEDEEGVTLTVDRFDPGREVPECLERTPTASLPGDFLIPCKVHTQGLCSRDMTVHNADDFTSTLKALQYHVCCKDFLDFGKLLSLRAQITPRESVEGVDFDFHWTAITLANSFKCVPVKPIPIIPTALARNLSSNLNISQVQGTYKHGYVTMDETRKLLLLLESDPKVYSLPLVGIWLSGIIHIYSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSLTHKEPEFYECLLCDSRAAGLQFQLLTNKETLHLFNNVESSDKNPIHFELSAESQDAEAEFLSKISKSLSVKRSPQKVSPGKLPINKHDANFEDEDLSPRPIPSPHPVSEKISKIQPSVPELSLVLDSNFTDSSNQSNPLEMENPVLMKQSKPDLCDDKHSTEADVGEPALTGIPNKLSQDTALRHCRGKQSPTCKKERPHFRNTNAKPLLNAPFPDVSETLQAVSTGSMQKEDHPVRPSSLNSRQPSLAPQAHPHNFVFSPHNSARPMELQGPIPSLTPYYSTNTCNCCHHHGHVQYSTINSWQGNMVGSLQDLRNEALPKHALFHSSGCLCHNDIYSSSSPVAMKPQGGRSGYSSRSSGEPSLSHMDSCVPQTCAMCMHTPSTVPDNGMMGLSPDAYRFVTEQDRQLRLLQAQIQRLLEAQSLNPGSPKTTTVEDTVKAAKQVELVSMEAQSSPGLHMRNSVSIAVSTGASLFWNAACDDQEPDSQLKQDDTKISSEDMNFSVDINNEVASPPGSASSLKAVDIPSFEESNLAVEEFNHPLPESNSSEEQRKEPDVPVFFPNALLAESVSMRLQTEPTEGASNSTESSEEPKVEPYWPADNQKIYQDLLGKVNQLLNNSSQEIDQPPTKAVGINHECTKTPNIHHVRKKKHNPGLVDKDCVLSATIKQLRSLGVKIDSPTKVKKNAQKVDHASVLACISPEAVISGLNYMSFANVGMSGLSPTGVDLSMEANAIALKYLNENQLSQLSRARSNQNNCDSSFGLLHINSDRSTVGLSLVSPSNMSFATKKYMKRYGLLESNDNSEDEESPGHADSEIDWELTRNPACRPVQFDHQKAPSHNAYETSQCSDCGSEDMHTDMPVLRNITNEAVQPRAAKQLNEDPAFSLRNLKPDAAVSLRTGKAEFTQHPEKENESDTAIFPGPLQPPETLKQMSSMHSVGTFLDVNRLRQLPKLF", "length": 1250, "header": "tr|A0A9J7FG85-1|A0A9J7FG85_CRIGR Isoform 1 of SCL-interrupting locus protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Stil PE=4 SV=1 CANONICAL=A0A9J7FG85-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FF25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF25/entry", "sequence": { "sequence": "MENPVLMKQSKPDLCDDKHSTEADVGEPALTGIPNKLSQDTALRHCRGKQSPTCKKERPHFRNTNAKPLLNAPFPDVSETLQAVSTGSMQKEDHPVRPSSLNSRQPSLAPQAHPHNFVFSPHNSARPMELQGPIPSLTPYYSTNTCNCCHHHGHVQYSTINSWQGNMVGSLQDLRNEALPKHALFHSSGCLCHNDIYSSSSPVAMKPQGGRSGYSSRSSGEPSLSHMDSCVPQTCAMCMHTPSTVPDNGMMGLSPDAYRFVTEQDRQLRLLQAQIQRLLEAQSLNPGSPKTTTVEDTVKAAKQVELVSMEAQSSPGLHMRNSVSIAVSTGASLFWNAACDDQEPDSQLKQDDTKISSEDMNFSVDINNEVASPPGSASSLKAVDIPSFEESNLAVEEFNHPLPESNSSEEQRKEPDVPVFFPNALLAESVSMRLQTEPTEGASNSTESSEEPKVEPYWPADNQKIYQDLLGKVNQLLNNSSQEIDQPPTKAVGINHECTKTPNIHHVRKKKHNPGLVDKDCVLSATIKQLRSLGVKIDSPTKVKKNAQKVDHASVLACISPEAVISGLNYMSFANVGMSGLSPTGVDLSMEANAIALKYLNENQLSQLSRARSNQNNCDSSFGLLHINSDRSTVGLSLVSPSNMSFATKKYMKRYGLLESNDNSEDEESPGHADSEIDWELTRNPACRPVQFDHQKAPSHNAYETSQCSDCGSEDMHTDMPVLRNITNEAVQPRAAKQLNEDPAFSLRNLKPDAAVSLRTGKAEFTQHPEKENESDTAIFPGPLQPPETLKQMSSMHSVGTFLDVNRLRQLPKLF", "length": 815, "header": "tr|A0A9J7FF25-1|A0A9J7FF25_CRIGR Computationally mapped isoform of SCL-interrupting locus protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Stil PE=4 SV=1 CANONICAL=A0A9J7FG85-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FG85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85/entry", "sequence": { "sequence": "MNTRFTSSKMVPFHFPPSKLALWNPMPIGGFIYLHLSYYRKPKLVVTEKAIRLAYRHAKQNKKNVPCFLLGSLTVDEDEEGVTLTVDRFDPGREVPECLERTPTASLPGDFLIPCKVHTQGLCSRDMTVHNADDFTSTLKALQYHVCCKDFLDFGKLLSLRAQITPRESVEGVDFDFHWTAITLANSFKCVPVKPIPIIPTALARNLSSNLNISQVQGTYKHGYVTMDETRKLLLLLESDPKVYSLPLVGIWLSGIIHIYSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSLTHKEPEFYECLLCDSRAAGLQFQLLTNKETLHLFNNVESSDKNPIHFELSAESQDAEAEFLSKISKSLSVKRSPQKVSPGKLPINKHDANFEDEDLSPRPIPSPHPVSEKISKIQPSVPELSLVLDSNFTDSSNQSNPLEMENPVLMKQSKPDLCDDKHSTEADVGEPALTGIPNKLSQDTALRHCRGKQSPTCKKERPHFRNTNAKPLLNAPFPDVSETLQAVSTGSMQKEDHPVRPSSLNSRQPSLAPQAHPHNFVFSPHNSARPMELQGPIPSLTPYYSTNTCNCCHHHGHVQYSTINSWQGNMVGSLQDLRNEALPKHALFHSSGCLCHNDIYSSSSPVAMKPQGGRSGYSSRSSGEPSLSHMDSCVPQTCAMCMHTPSTVPDNGMMGLSPDAYRFVTEQDRQLRLLQAQIQRLLEAQSLNPGSPKTTTVEDTVKAAKQVELVSMEAQSSPGLHMRNSVSIAVSTGASLFWNAACDDQEPDSQLKQDDTKISSEDMNFSVDINNEVASPPGSASSLKAVDIPSFEESNLAVEEFNHPLPESNSSEEQRKEPDVPVFFPNALLAESVSMRLQTEPTEGASNSTESSEEPKVEPYWPADNQKIYQDLLGKVNQLLNNSSQEIDQPPTKAVGINHECTKTPNIHHVRKKKHNPGLVDKDCVLSATIKQLRSLGVKIDSPTKVKKNAQKVDHASVLACISPEAVISGLNYMSFANVGMSGLSPTGVDLSMEANAIALKYLNENQLSQLSRARSNQNNCDSSFGLLHINSDRSTVGLSLVSPSNMSFATKKYMKRYGLLESNDNSEDEESPGHADSEIDWELTRNPACRPVQFDHQKAPSHNAYETSQCSDCGSEDMHTDMPVLRNITNEAVQPRAAKQLNEDPAFSLRNLKPDAAVSLRTGKAEFTQHPEKENESDTAIFPGPLQPPETLKQMSSMHSVGTFLDVNRLRQLPKLF", "length": 1250, "header": "tr|A0A9J7FG85-1|A0A9J7FG85_CRIGR Isoform 1 of SCL-interrupting locus protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Stil PE=4 SV=1 CANONICAL=A0A9J7FG85-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JG05-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG05/entry", "sequence": { "sequence": "MNTRFTSSKMVPFHFPPSKLALWNPMPIGGFIYLHLSYYRKPKLVVTEKAIRLAYRHAKQNKKNVPCFLLGSLTVDEDEEGVTLTVDRFDPGREVPECLERTPTASLPGDFLIPCKVHTQGLCSRDMTVHNADDFTSTLKALQYHVCCKDFLDFGKLLSLRAQITPRESVEGVDFDFHWTAITLANSFKCVPVKPIPIIPTALARNLSSNLNISQVQGTYKHGYVTMDETRKLLLLLESDPKVYSLPLVGIWLSGIIHIYSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSLTHKEPEFYECLLCDSRAAGLQFQLLTNKETLHLFNNVESSDKNPIHFELSAESQDAEAEFLSKISKSLSVKRSPQKVSPGKLPINKHDANFEDEDLSPRPIPSPHPISKIQPSVPELSLVLDSNFTDSSNQSNPLEMENPVLMKQSKPDLCDDKHSTEADVGEPALTGIPNKLSQDTALRHCRGKQSPTCKKERPHFRNTNAKPLLNAPFPDVSETLQAVSTGSMQKEDHPVRPSSLNSRQPSLAPQAHPHNFVFSPHNSARPMELQGPIPSLTPYYSTNTCNCCHHHGHVQYSTINSWQGNMVGSLQDLRNEALPKHALFHSSGCLCHNDIYSSSSPVAMKPQGGRSGYSSRSSGEPSLSHMDSCVPQTCAMCMHTPSTVPDNGMMGLSPDAYRFVTEQDRQLRLLQAQIQRLLEAQSLNPGSPKTTTVEDTVKAAKQVELVSMEAQSSPGLHMRNSVSIAVSTGASLFWNAACDDQEPDSQLKQDDTKISSEDMNFSVDINNEVASPPGSASSLKAVDIPSFEESNLAVEEFNHPLPESNSSEEQRKEPDVPVFFPNALLAESVSMRLQTEPTEGASNSTESSEEPKVEPYWPADNQKIYQDLLGKVNQLLNNSSQEIDQPPTKAVGINHECTKTPNIHHVRKKKHNPGLVDKDCVLSATIKQLRSLGVKIDSPTKVKKNAQKVDHASVLACISPEAVISGLNYMSFANVGMSGLSPTGVDLSMEANAIALKYLNENQLSQLSRARSNQNNCDSSFGLLHINSDRSTVGLSLVSPSNMSFATKKYMKRYGLLESNDNSEDEESPGHADSEIDWELTRNPACRPVQFDHQKAPSHNAYETSQCSDCGSEDMHTDMPVLRNITNEAVQPRAAKQLNEDPAFSLRNLKPDAAVSLRTGKAEFTQHPEKENESDTAIFPGPLQPPETLKQMSSMHSVGTFLDVNRLRQLPKLF", "length": 1246, "header": "tr|A0A9J7JG05-1|A0A9J7JG05_CRIGR Computationally mapped isoform of SCL-interrupting locus protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Stil PE=4 SV=1 CANONICAL=A0A9J7FG85-1" }, "locus": {} }, { "isoform_ac": "G3GYT4-1", "url": "https://www.uniprot.org/uniprotkb/G3GYT4/entry", "sequence": { "sequence": "MNTRFTSSKMVPFHFPPSKLALWNPMPIGGFIYLHLSYYRKPKLVVTEKAIRLAYRHAKQNKKNVPCFLLGSLTVDEDEEGVTLTVDRFDPGREVPECLERTPTASLPGDFLIPCKVHTQGLCSRDMTVHNADDFTSTLKALQYHVCCKDFLDFGKLLSLRAQITPRESVEGVDFDFHWTAITLANSFKCVPVKPIPIIPTALARNLSSNLNISQVQGTYKHGYVTMDETRKLLLLLESDPKVYSLPLVGIWLSGIIHIYSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSLTHKEPEFYECLLCDSRAAGLQFQLLTNKETLHLFNNVESSDKNPIHFELSAESQDAEAEFLSKISKSLSVKRSPQKVSPGKLPINKHDANFEDEDLSPRPIPSPHPVSEKISKIQPSVPELSLVLDSNFTDSSNQSNPLEMENPVLMKQSKPDLCDDKHSTEADVGEPALTGIPNKLSQDTALRHCRGKQSPTCKKERPHFRNTNAKPLLNAPFPDVSETLQAVSTGSMQKEDHPVRPSSLNSRQPSLAPQAHPHNFVFSPHNSARPMELQGPIPSLTPYYSTNTCNCCHHHGHVQYSTINSWQGNMVGSLQDLRNEALPKHALFHSSGCLCHNDIYSSSSPVAMKPQGGRSGYSSRSSGEPSLSHMDSCVPQTCAMCMHTPSTVPDNGMMGLSPDAYRFVTEQDRQLRLLQAQIQRLLEAQSLNPGSPKTTTVEDTVKAAKQVELVSMEAQSSPGLHMRNSVSIAVSTGASLFWNAACDDQEPDSQLKQDDTKISSEDMNFSVDINNEVASPPGSASSLKAVDIPSFEESNLAVEEFNHPLPESNSEEQRKEPDVPVFFPNALLAESVSMRLQTEPTEGASNSTESSEEPKVEPYWPADNQKIYQDLLGKVNQLLNNSSQEIDQPPTKAVGINHECTKTPNIHHVRKKKHNPGLVDKDCVLSATIKQLRSLGVKIDSPTKVKKNAQKVDHASVLACISPEAVISGLNYMSFANVGMSGLSPTGVDLSMEANAIALKYLNENQLSQLSRARSNQNNCDSSFGLLHINSDRSTVGLSLVSPSNMSFATKKYMKRYGLLESNDNSEDEESPGHADSEIDWELTRNPACRPVQFDHQKAPSHNAYETSQCSDCGSEDMHTDMPVLRNITNEAVQPRAAKQLNEDPAFSLRNLKPDAAVSLRTGKAEFTQHPEKENESDTAIFPGPLQPPETLKQMSSMHSVGTFLDVNRLRQLPKLF", "length": 1249, "header": "tr|G3GYT4-1|A0A9J7FG85_CRIGR Computationally mapped isoform of SCL-interrupting locus protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Stil PE=4 SV=1 CANONICAL=A0A9J7FG85-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GYT4", "url": "https://www.uniprot.org/uniprotkb/G3GYT4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GYT4", "url": "https://www.uniprot.org/uniprotkb/G3GYT4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759008", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759008", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KB96-1", "protein_name": "STIL, centriolar assembly protein", "gene_name": "Stil", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFPLSTAFTVSHTFGKPKLTVTEKAIRLAYRHAKQSKKNVPCFLLGSLTVDEDEEGVTLTIDRFDPGRETRECLERTPTAALPGDFLIPCKVHTQGLCSRDTKVHNADDFSSALKALQHHVCSKDLLDCGKLLSLRAQITPRESLGGVDLNLQWTAVTLANPFKCIPVKPIPIIPTALARNLSSSLNISQVQGTCKHGYITMDETRKLLLLLESDPKVYSLPLVGIWLSGIIHIYSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSLTHKEPEFYECLPCDSRTPELQFQLLTNKETFHLFKNVEPSSKNLMHFELSAESQDAEAEAKLFSKISKDLSVKRASQKVSPGKIPINKRDTDLEDEDFSPRPIPSPHPVSQKISKIQPSVPELSLVLDNNFTESSNPSKPVEVMAVENPLLIKPSQPELCDDKHSSEANTGEPFLRGLPNQLSQDTALRQCRGKQSSTCMKESLPFRSTNAKPSLNAPSPDVAEKLQAVSAGSMSKEDYPVRPSLLDSRQPSLAPQAHPHNLVFSPHNSTRPMELQVPTPSLPSYYSTNVCSCCQHHGHIQYSTINSWQGNTVGSVQDLRSEALPKHAFFHSSGCPSLCPNAIYSSSSPVTMKPQGGVDTYSPHSNGEPSPVAGPSHVDSCVPHPCAVCMHTPTTAPDNGMMGLSPDAYRFVTEQDRQLRLLQAQIQRLLEAQSLDPGSHKSVATAEDSVKAARQMELVSVEAQSSPGLHMRKSVSIAVSTGASLFWNAAGDDQEHDAQLKQDDTKISSEDMNFSVDINNEATSPPGSASSLKAVDIPSFEESNPAVEEFNQPLPESNSSEQRKEPDVPVFFPNALLAESVSMCLQTAPAEGASNSTESPQGTKVEPFGPSDNKIYQDLLGQVNHLLSNSSQETDQPPTRAVVINHECTKTQNAHHARKKRHTSGLVDTDCVLSATIKQLRSLGVKIDSPTKVKKSAQKVDHASVLACISPEAVISGLNYMSFGNIGMSSLSPTGVDLSMEANAIALRYLSENQLSQLSLARSNQNHCDSSLGLLHINSDKSSVGLSLVSPSNMSFATKKYMKRYGLLQSSDNSEDEDEEEPPGHSDSESNRVLNRNPACKPAQCGPERAPSRNACETAQCSNGGSGDTHTDVPVLRNITNQAQQPRAAEHLTQDSAVSLRNLKPHPAVNLRTGKAEFTRHPEKENERDIAVFPELSQSPETLKQMNSMNSVGTFLDVKRLRQLPKLF", "length": 1239 }, "evidence": [ { "id": "A0A9J7FG85", "url": "https://omabrowser.org/oma/group/A0A9J7FG85/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15468-1", "protein_name": "SCL-interrupting locus protein", "gene_name": "STIL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPIYPFARPQMNTRFPSSRMVPFHFPPSKCALWNPTPTGDFIYLHLSYYRNPKLVVTEKTIRLAYRHAKQNKKNSSCFLLGSLTADEDEEGVTLTVDRFDPGREVPECLEITPTASLPGDFLIPCKVHTQELCSREMIVHSVDDFSSALKALQCHICSKDSLDCGKLLSLRVHITSRESLDSVEFDLHWAAVTLANNFKCTPVKPIPIIPTALARNLSSNLNISQVQGTYKYGYLTMDETRKLLLLLESDPKVYSLPLVGIWLSGITHIYSPQVWACCLRYIFNSSVQERVFSESGNFIIVLYSMTHKEPEFYECFPCDGKIPDFRFQLLTSKETLHLFKNVEPPDKNPIRCELSAESQNAETEFFSKASKNFSIKRSSQKLSSGKMPIHDHDSGVEDEDFSPRPIPSPHPVSQKISKIQPSVPELSLVLDGNFIESNPLPTPLEMVNNENPPLINHLEHLKPLQPQLYDEKHSPEVEAGEPSLRGIPNQLNQDKPALLRHCKVRQPPAYKKGNPHTRNSIKPSSHNGPSHDIFEKLQTVSAGNVQNEEYPIRPSTLNSRQSSLAPQSQPHDFVFSPHNSGRPMELQIPTPPLPSYCSTNVCRCCQHHSHIQYSPLNSWQGANTVGSIQDVQSEALQKHSLFHPSGCPALYCNAFCSSSSPIALRPQGDMGSCSPHSNIEPSPVARPPSHMDLCNPQPCTVCMHTPKTESDNGMMGLSPDAYRFLTEQDRQLRLLQAQIQRLLEAQSLMPCSPKTTAVEDTVQAGRQMELVSVEAQSSPGLHMRKGVSIAVSTGASLFWNAAGEDQEPDSQMKQDDTKISSEDMNFSVDINNEVTSLPGSASSLKAVDIPSFEESNIAVEEEFNQPLSVSNSSLVVRKEPDVPVFFPSGQLAESVSMCLQTGPTGGASNNSETSEEPKIEHVMQPLLHQPSDNQKIYQDLLGQVNHLLNSSSKETEQPSTKAVIISHECTRTQNVYHTKKKTHHSRLVDKDCVLNATLKQLRSLGVKIDSPTKVKKNAHNVDHASVLACISPEAVISGLNCMSFANVGMSGLSPNGVDLSMEANAIALKYLNENQLSQLSVTRSNQNNCDPFSLLHINTDRSTVGLSLISPNNMSFATKKYMKRYGLLQSSDNSEDEEEPPDNADSKSEYLLNQNLRSIPEQLGGQKEPSKNDHEIINCSNCESVGTNADTPVLRNITNEVLQTKAKQQLTEKPAFLVKNLKPSPAVNLRTGKAEFTQHPEKENEGDITIFPESLQPSETLKQMNSMNSVGTFLDVKRLRQLPKLF", "length": 1287 }, "evidence": [ { "id": "A0A9J7FG85", "url": "https://omabrowser.org/oma/group/A0A9J7FG85/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q60988-1", "protein_name": "SCL-interrupting locus protein homolog", "gene_name": "Stil", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTRFPSSKMVPFHFPPSKLALWNPMPIGECIYLHLSYYRKPKLMVTEKAIRLAYRHAKQNKKNVPCFLLGSLTVDEDEEGVTLTIDRFDPGREIPECLERTPTASLPGDFLIPCRVHIQGLGSRDVIVHNADDFSSALKALQYHVCSKDFLDCGKLLCLRAQITPRESLDGVDFNLQWTAVTLANSFKCVPVKPIPIIPTALARNLSSNLNISQVQGTYKHGYITMDETRKLLLLLQSDPKVSSLPLVGIWLAGIIHVYSPQVWACCLRYMFSSSIQERVFSESGNFIIVLYSLTHKEPEFYECLPCESRTPDLQFQLLTNKETLHLFNNVEPSGKNPIHFELSAESQDAEAEAEVLSKISKTLPVKRSSQKLSPGKIPINKHDTDLEDEDFSPRPIPSPHPVSQKISKVQPSVPELSLVLDNNFTESSNQSNPLEMMTVENPLLIKPSQPELCDAKHSSEATTGEPFRRGPTNQLSQDTALRQSRGKQSSTCKKESLQFRNTNAKPSLSVPSPDVAEKLQAVSAGSMQKEDYPVRPSTLDSRQPSLAPQAQPHNLVFSTHNSTRPMELQVPTPSLPSYYPTNVCSCCQHHGHIQYSTINSWQGNTVGSIQDLRSESLPKHAFFHSSGCPSLCPNAIYSSSSPVSMKQGGMGAYSPHSNGEPSPVAGPSHVDSCVPHPCAMCMHTPNTAPDNGMMGLSPDAYRFVTEQDRQLRLLQAQIQRLLEAQSLDPGSHKTVATVEDTVKAAKQMELVSMEAQSSPGLHMRKSVSIAVSTGASLFWNAAGDDQEPDSQPKQDDTKISSEDMNFSVDINNEATSLPGSASSLKAVDIPSFEESNLAVEEVNQPLPESNSSSEQSKEPGVPVFFPNALLAESVSMCLQTAPTEGASNSTELPQGTKDEPYRPSDNQKIYQDLLGQVNHLLSNASQETEEPPTKAVVTNRECAKTQNTHHARKKRHNSGLVDKDCVLSATIKQLRSLGVKIDSPTKVKKNEQKVDHASVLACISPEAVISGLNYMSFGNVGMSSLSPTGVDLSMEANAIALKYLSENQLSQLSLARSKQNNGDSSVGLLHINSDRSTVGLSLVSPSNMSFATKKYMKRYGLLQSSDNSEDEEEPPSHADSESDHVLNRNPACRPVQCGHEKEPSWNACEIAQCSDCGSADTRTDVPVLRNITNQAVQPRATEHLNEDSAISLRNLKPNPAMNLRTGKAEFTHHPEKENERDIAVFPGTLPSPETLKQMNSMDSVGTFLDVKRLRQLPKLF", "length": 1262 }, "evidence": [ { "id": "A0A9J7FG85", "url": "https://omabrowser.org/oma/group/A0A9J7FG85/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8JGS1-1", "protein_name": "SCL-interrupting locus protein homolog", "gene_name": "stil", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNRVQVDFKGLPAHILENSIAAESLQNTRSSDNVLTPLTFPKSKVALWDPSANGEVVSLHFSYYRNPRLFLVEKALRLAHRHARQTNKPRFFCFLLGTLAVDSDEEGVTITLDRFDPGREQTGCLGKAPTALLPGDILVPCVFEAQHAASSTVHSSEDLNISFKMLQHFCCSKELLELSKLLTLRAQLSCSENMDRLTFNLSWAAVTLACTLDAVPIRAVPIIPTALARNLSSPAGVTQNSKRGFLTMDQTRKLLLILESDPKAYTLPLVGIWLSGVTHIHNPLVWAWCLRYLHSSSLQDKVLSEGGTFLVVLYSLTHRDPEFYQCKPSTGQQQLSFQLLTSRDSLTLYKNVEPSEGRPLQFELSSENQNQETVLFEEVLSQSVLTGTTLGAASAAPQNKLSISDHDSGVEDEDLSPRPSPNPHPVSQQTKRVHPLVPELSMVLDGSFLDGSVVNTQGSTPLSHSQSNVHRRNSSPALQGLSVLRPLVQGSVTKPPPIRRPLTPILSQPKNKLHPNPSQQTPQHSVSRKSLPSMRRSREGSSASSVSSSSSSSSTKNASPNGSFHQQRQRLSQGFPNKPQLIYSGPPTSGHSSAKKSSSVPSQTPVPHPSQHRIFHSTPAVNPCNCCTNHPSVAPLYQNNTWQGTPGYPTAVHSPCVFHCSPETVPPGDHCLSPSRQSLGCRVSPTKSPVCYHSTPPHYSPSSGPCVPTIISNKGLVEQTPSCQAQCCQVKGSKEPCLDTPMGLLPADAYRMLIDQERQLKLLQLQIQKLLESQSKVPEVSSEQNAQQQRPNQVPASPPKRTSVSIAVGTGASLFWSTPQETSTHEASSLEWQTETEPKSGCQNDSTVTSRDRSESACHYSEEHCPGSPQHPTSPQHNTSSGFGVQMFQSPVLGESASMYYQSQSQSKDLSENREIDDPRFYHELLGQVQSRLQDSVIVEDKVEQDQQSLLKTQSLSPVVHQSRKPLTTSSIPQTQKTKQPSSPPNQDRVLSATLKQLQQFGVNIDLDSSQEKTTRATVESASTLACINPEAVIPRLALSEPVGASIWGPSGSVDLSLEANAIALKYLSDSQLSRLSLGSQSSSPHSDPSTILLRRPAVEKSNVALSILSPSNMSLATCKYMKKYGLIEGEISSEEEQEDPIQVDSALGCSVQHETSKTISLGQEREEQNTAVLKNITNKPVVNLHTSPIDSQEQILQDLRPKMQLLLRGGTNSEKENATKRNLIERRSSLTENQRTQEVVDPQGSVGNFLDLSRLRQLPKLF", "length": 1263 }, "evidence": [ { "id": "A0A9J7FG85", "url": "https://omabrowser.org/oma/group/A0A9J7FG85/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of centriole replication", "id": "GO:0046601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046601", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ], "pmid": "" }, { "name": "positive regulation of G1/S transition of mitotic cell cycle", "id": "GO:1900087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ], "pmid": "" }, { "name": "smoothened signaling pathway", "id": "GO:0007224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007224", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ], "pmid": "" }, { "name": "mitotic spindle organization", "id": "GO:0007052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007052", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ], "pmid": "" }, { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ], "pmid": "" }, { "name": "microtubule organizing center organization", "id": "GO:0031023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031023", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FG85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG85" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616358.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027241216", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241216" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Letmd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756020", "url": "https://www.ncbi.nlm.nih.gov/gene/100756020", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033122", 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"MALSRVCGARAALWGSAVALGPFVTRRLQLGRSGPAWRAPRSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKAIPGAATRKGHSIHLREHRRLWQDKTNSSNSETGDISWHTQTVGS", "length": 382, "header": "tr|A0A9J7FBK1-1|A0A9J7FBK1_CRIGR Isoform 1 of LETM1 domain-containing protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F6L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L9/entry", "sequence": { "sequence": "MYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYLETRR", "length": 203, "header": "tr|A0A9J7F6L9-1|A0A9J7F6L9_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7D5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7D5/entry", "sequence": { "sequence": "MKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYLETRR", "length": 271, "header": "tr|A0A9J7F7D5-1|A0A9J7F7D5_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1/entry", "sequence": { "sequence": "MALSRVCGARAALWGSAVALGPFVTRRLQLGRSGPAWRAPRSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKAIPGAATRKGHSIHLREHRRLWQDKTNSSNSETGDISWHTQTVGS", "length": 382, "header": "tr|A0A9J7FBK1-1|A0A9J7FBK1_CRIGR Isoform 1 of LETM1 domain-containing protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRC2/entry", "sequence": { "sequence": "MALSRVCGARAALWGSAVALGPFVTRRLQLGRSGPAWRAPRSQIGLFDLPCRSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSKLSCPSCCTTWSCFPPTTLRQGAE", "length": 340, "header": "tr|A0A9J7GRC2-1|A0A9J7GRC2_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTJ2/entry", "sequence": { "sequence": "MLILFRHSSAWAAPLRPKSFGNRCQKLVFKSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYLETRR", "length": 349, "header": "tr|A0A9J7GTJ2-1|A0A9J7GTJ2_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTS5/entry", "sequence": { "sequence": "MALSRVCGARAALWGSAVALGPFVTRRLQLGRSGPAWRAPRSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKAELSLLLHNVVLLSTNYLETRR", "length": 359, "header": "tr|A0A9J7GTS5-1|A0A9J7GTS5_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JC48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC48/entry", "sequence": { "sequence": "MALSRVCGARAALWGSAVALGPFVTRRLQLGRSGPAWRAPRSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKAPTSAMR", "length": 344, "header": "tr|A0A9J7JC48-1|A0A9J7JC48_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDM4/entry", "sequence": { "sequence": "MALSRVCGARAALWGSAVALGPFVTRRLQLGRSGPAWRAPRSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKVPSRCHQVSFHRYHFHSTLYQLPGLLANVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYLETRR", "length": 259, "header": "tr|A0A9J7JDM4-1|A0A9J7JDM4_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X9 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} }, { "isoform_ac": "G3IHH1-1", "url": "https://www.uniprot.org/uniprotkb/G3IHH1/entry", "sequence": { "sequence": "MALSRVCGARAALWGSAVALGPFVTRRLQLGRSGPAWRAPRSSRLHLSPKADVKNLISYVVTKTRAINGTYHRFLGHHFPRFYALYTVFMKGIQMLWADGKKARRIKANMWKHNVKFHQLSYREMEHLRQFRRDATKCLFIGIISIPPFTNYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDIYHSLRKQSHSEIITHLERASALVSDERLRWHLKDLCTKVQNGAHPTAHDILALRECFSTWPLGLNQLQALHMRALSRAMLLTPYLPPALLRWRLKSHTTVIHQLDRALAKLGVGQLTAQEVKSACYLRGLNSTHIADDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYLETRR", "length": 360, "header": "tr|G3IHH1-1|A0A9J7FBK1_CRIGR Computationally mapped isoform of LETM1 domain-containing protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Letmd1 PE=4 SV=1 CANONICAL=A0A9J7FBK1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IHH1", "url": "https://www.uniprot.org/uniprotkb/G3IHH1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IHH1", "url": "https://www.uniprot.org/uniprotkb/G3IHH1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756020", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756020", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287A743-1", "protein_name": "LETM1 domain containing 1", "gene_name": "LETMD1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MALSRVCWARAALWGSAVPPGPYVARKLQFVRSGLAWGAPRSSKLHVTPKTDVKSLISYVATKTKVIHEKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNVKFHQLSYREMEHLRQFRRDVNKCLFLGILSIPPFANYLVFLLMYLFPRQLLIQHFWTPKQQIDFLDIYHALRNQSHPEILSYLERVIPLISDAGLQWHMTELCSKMQRGTHPSKHDILALRECFSDHPLGMNQLQALQMRALSRAMLLTPYLPSVLLRHRLKTHTTVIHQLDQALAKLGIGQLTAQEVKSACYLRGLNSTHIAEERCRTWLGEWLQISCSLKDAELSLLLHSVVLLSINYTGTGR", "length": 360 }, "evidence": [ { "id": "A0A9J7FBK1", "url": "https://omabrowser.org/oma/group/A0A9J7FBK1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0ZV09-1", "protein_name": "LETM1 domain containing 1", "gene_name": "LOC107049895", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAASMPHAATSALPHVTAARPLPLPVTCPAAKMALCRAGRCGALRLWGPAPPLLAALRPLPVLSLPTKASSRWALGARWLRGRYERFLQRSFPRLYALHSAFTAGLEALLADAREVRQIRQTMAREGLSAAQLNYRDMERLRQFRRDVLKAVPVALIAIPPFANFLVLLLMYFFPRQFLIRHFWTPRQQQQFSEENHSARRAAYAAVLSCLDTAVQSLPEQRLQHRLRELCLQVQRGRHPRVAELCAVRALFSGPALRLAELRAAHVRALSRVLFLTPLLPSVLVRRRLRGHLLEIRHLDGALARLGLAQLSEEELRAACYLRGLNPSQLSAAQCRAWLEQWLGLSCMLQASEASLLANSMVLLSLNYAGAEQ", "length": 373 }, "evidence": [ { "id": "A0A9J7FBK1", "url": "https://omabrowser.org/oma/group/A0A9J7FBK1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6P1Q0-1", "protein_name": "LETM1 domain-containing protein 1", "gene_name": "LETMD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALSRVCWARSAVWGSAVTPGHFVTRRLQLGRSGLAWGAPRSSKLHLSPKADVKNLMSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIKFHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQTDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALRECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYLGTRR", "length": 360 }, "evidence": [ { "id": "A0A9J7FBK1", "url": "https://omabrowser.org/oma/group/A0A9J7FBK1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q924L1-1", "protein_name": "LETM1 domain-containing protein 1", "gene_name": "Letmd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALSRVCWARAALWGSTVAPGPFVTRRLQLGRSGPAWRAPRSSKLHLSPKADVKNLISYVVTKTRAINGSYHRFLGRHFPRFYALYTTFMKGIQMLWADGKKARRIKADMWKQNLKFHQLSYREMEHLRQFRRDITKCLFVGLISIPPFANYLVFLLMYLFPRQLLVKHFWTPKQQIDFLDVYHGLRRRSHSEVITHLRRASTFVSHEKLRRQLTDLCTKVQSGTHPAAQDVLALRDCFSTYPLGFSQLQASQMRALSQAMLLTPYLPPPLLRQRLKSHTTVIHQLDRALAKLGIGQLTAQEVKSACYLRGLNSTHIADDRCRAWLGEWLHISCSLKEPELSLLLHNVVLLSTNYLETRR", "length": 360 }, "evidence": [ { "id": "A0A9J7FBK1", "url": "https://omabrowser.org/oma/group/A0A9J7FBK1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VSM4-1", "protein_name": "Letm1 RBD domain-containing protein", "gene_name": "Dmel\\CG5989", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MALALRVARCAAIPANCWPRDRRRLLHLCSSASDKRPTAFCSRNYATKPEAAVPPQIKRNVAAEITSVGKVIYETGWDANKPIEKPKVRPSSSSSTQPTPSKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFPKAMQLYRVFFDGVKDFFGDMKRFLKIARIANDSPQGIRALNRQELELYMQMPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQSYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPEMLIDVKDIFAEGPYSLLGMSRKHVRNLVNLHGLPSSIFKRHRLHEHAFLVHYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKVSTSIQGEHITLFLHLPILLGYNHPNNWKTIYGKCPT", "length": 436 }, "evidence": [ { "id": "A0A9J7FBK1", "url": "https://omabrowser.org/oma/group/A0A9J7FBK1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" }, { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" }, { "name": "mitochondrion organization", "id": "GO:0007005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" }, { "name": "intracellular monoatomic cation homeostasis", "id": "GO:0030003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030003", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" }, { "name": "positive regulation of cold-induced thermogenesis", "id": "GO:0120162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120162", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" }, { "name": "regulation of phagocytosis", "id": "GO:0050764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050764", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBK1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FBK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBK1" }, { "id": "PS51758", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51758" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Letm1 RBD", "eco_id": "ECO_0000259", "start_pos": 178, "end_pos": 382, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 313, "end_pos": 315 }, { "start_pos": 364, "end_pos": 366 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FBL4-1", "uniprot_ac": "A0A9J7FBL4", "uniprot_id": "A0A9J7FBL4_CRIGR", "mass": { "chemical_mass": 63166.0, "monoisotopic_mass": 63166.0 }, "refseq": { "ac": "XP_027254140", "name": "dnaJ homolog subfamily C member 11 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254140" }, "gene_names": [ { "name": "Dnajc11", "type": "recommended", "evidence": [ { "id": "A0A9J7FBL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4" } ] }, { "name": "Dnajc11", "type": "synonym", "evidence": [ { "id": "XP_027254140", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254140" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily C member 11", "type": "recommended", "evidence": [ { "id": "A0A9J7FBL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily C member 11 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027254140", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254140" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254140", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254140" } ] }, { "annotation": "Required for mitochondrial inner membrane organization. Seems to function through its association with the MICOS complex and the mitochondrial outer membrane sorting assembly machinery (SAM) complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4#function" }, { "database": "UniProtKB", "id": "ARBA00056707", "url": "https://www.uniprot.org/uniprotkb/ARBA00056707#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dnajc11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBL4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBL4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760814", "url": "https://www.ncbi.nlm.nih.gov/gene/100760814", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024586", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024586", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760814", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760814", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FBL4", "url": "https://www.orthodb.org/?gene=A0A9J7FBL4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44157:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44157:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11875", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11875", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22774", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22774", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254140", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254140", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I4U4", "url": "https://www.uniprot.org/uniprotkb/G3I4U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I4U4-1", "url": "https://www.uniprot.org/uniprotkb/G3I4U4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPDLKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKSGLEMEGWEVVERKRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFDRYDEDYEDVSGGGFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTCHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVIYLAMHRLIIKPYLRAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIVVNAWYGKFVKDKSRKNERVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKSLRVLYQFRGVLHQVMVPDSEALRIPKQSHRIDTDG", "length": 559, "header": "tr|A0A9J7FBL4-1|A0A9J7FBL4_CRIGR Isoform 1 of DnaJ homolog subfamily C member 11 OS=Cricetulus griseus OX=10029 GN=Dnajc11 PE=3 SV=1 CANONICAL=A0A9J7FBL4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4/entry", "sequence": { "sequence": 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"MLYHPDKHRDPDLKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKSGLEMEGWEVVERKRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFDRYDEDYEDVSGGGFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTCHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVIYLAMHRLIIKPYLRAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIVVNAWYGKFVKDKSRKNERVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKSLRVLYQFRGVLHQVMVPDSEALRIPKQSHRIDTDG", "length": 521, "header": "tr|G3I4U4-1|A0A9J7FBL4_CRIGR Computationally mapped isoform of DnaJ homolog subfamily C member 11 OS=Cricetulus griseus OX=10029 GN=Dnajc11 PE=3 SV=1 CANONICAL=A0A9J7FBL4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I4U4", "url": "https://www.uniprot.org/uniprotkb/G3I4U4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760814", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760814", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBL4", "url": 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"domain_list": [ { "evidence": [ { "id": "A0A9J7FBL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBL4" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 82, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 230, "end_pos": 232 }, { "start_pos": 281, "end_pos": 283 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"A0A9J7FBB8-1", "uniprot_ac": "A0A9J7FBB8", "uniprot_id": "A0A9J7FBB8_CRIGR", "mass": { "chemical_mass": 11731.0, "monoisotopic_mass": 11731.0 }, "refseq": { "ac": "XP_007642936", "name": "cAMP-dependent protein kinase inhibitor beta isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642936" }, "gene_names": [ { "name": "Pkib", "type": "recommended", "evidence": [ { "id": "A0A9J7FBB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8" } ] }, { "name": "Pkib", "type": "synonym", "evidence": [ { "id": "XP_007642936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642936" } ] } ], "protein_names": [ { "name": "cAMP-dependent protein kinase inhibitor beta isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007642936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642936" }, { "id": "A0A9J7FBB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614045.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642936", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642936" } ] }, { "annotation": "Extremely potent competitive inhibitor of cAMP-dependent protein kinase activity, this protein interacts with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains.", "evidence": [ { "database": "UniProtKB", "id": "G3HKK9", "url": "https://www.uniprot.org/uniprotkb/G3HKK9#function" }, { "database": "UniProtKB", "id": "ARBA00002844", "url": "https://www.uniprot.org/uniprotkb/ARBA00002844#function" }, { "database": "UniProtKB", "id": "A0A9J7FBB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pkib", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8", "locus": {} } ], "crossref": [ { "id": "100751859", "url": "https://www.ncbi.nlm.nih.gov/gene/100751859", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751859", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751859", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQDVAMR", "url": "https://omabrowser.org/oma/group/YQDVAMR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FBB8", "url": "https://www.orthodb.org/?gene=A0A9J7FBB8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HKK9", "url": "https://www.orthodb.org/?gene=G3HKK9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02827", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02827", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642936", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642936", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HKK9", "url": "https://www.uniprot.org/uniprotkb/G3HKK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HKK9-1", "url": "https://www.uniprot.org/uniprotkb/G3HKK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKNLDDLGGQKETSDSSKGSDSPGSQQDAVMRTDSSEMTDVESVISTFAASARAGRRNALADIQTLDVTGGTSDLPLKLEALTVKEDVKKKNEEKAQDQPEKTLNEEK", "length": 109, "header": "tr|A0A9J7FBB8-1|A0A9J7FBB8_CRIGR Isoform 1 of cAMP-dependent protein kinase inhibitor beta isoform X1 OS=Cricetulus griseus OX=10029 GN=Pkib PE=3 SV=1 CANONICAL=A0A9J7FBB8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8/entry", "sequence": { "sequence": "MDKNLDDLGGQKETSDSSKGSDSPGSQQDAVMRTDSSEMTDVESVISTFAASARAGRRNALADIQTLDVTGGTSDLPLKLEALTVKEDVKKKNEEKAQDQPEKTLNEEK", "length": 109, "header": "tr|A0A9J7FBB8-1|A0A9J7FBB8_CRIGR Isoform 1 of cAMP-dependent protein kinase inhibitor beta isoform X1 OS=Cricetulus griseus OX=10029 GN=Pkib PE=3 SV=1 CANONICAL=A0A9J7FBB8-1" }, "locus": {} }, { "isoform_ac": "G3HKK9-1", "url": "https://www.uniprot.org/uniprotkb/G3HKK9/entry", "sequence": { "sequence": "MRTDSSEMTDVESVISTFAASARAGRRNALADIQTLDVTGGTSDLPLKLEALTVKEDVKKKNEEKAQDQPEKTLNEEK", "length": 78, "header": "tr|G3HKK9-1|A0A9J7FBB8_CRIGR Computationally mapped isoform of cAMP-dependent protein kinase inhibitor beta isoform X1 OS=Cricetulus griseus OX=10029 GN=Pkib PE=3 SV=1 CANONICAL=A0A9J7FBB8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HKK9", "url": "https://www.uniprot.org/uniprotkb/G3HKK9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HKK9", "url": "https://www.uniprot.org/uniprotkb/G3HKK9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751859", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751859", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YH48-1", "protein_name": "Protein kinase (cAMP-dependent, catalytic) inhibitor beta", "gene_name": "PKIB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTDVEPLVTDFAASGRAGRRNALPDILGSPAGAGTSDLPHKLAELSVSEGNEGAEGGEVSSSKALLESQEAEGKSNNS", "length": 78 }, "evidence": [ { "id": "A0A9J7FBB8", "url": "https://omabrowser.org/oma/group/A0A9J7FBB8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1SF58-1", "protein_name": "cAMP-dependent protein kinase inhibitor", "gene_name": "PKIB", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRTDSSKMTDVEPVVNNFASSARAGRRNALPDIQGSPTTGGTSELPLKLEALSVKEDVKNKDEETAQDQSEKPEDEGK", "length": 78 }, "evidence": [ { "id": "A0A9J7FBB8", "url": "https://omabrowser.org/oma/group/A0A9J7FBB8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P27775-1", "protein_name": "cAMP-dependent protein kinase inhibitor beta", "gene_name": "Pkib", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTDVESVISSFASSARAGRRNALPDIQSSLATGGSPDLALKLEALAVKEDAKMKNEEKDQGQPKKPLDEDK", "length": 71 }, "evidence": [ { "id": "A0A9J7FBB8", "url": "https://omabrowser.org/oma/group/A0A9J7FBB8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5SPN9-1", "protein_name": "cAMP-dependent protein kinase inhibitor", "gene_name": "pkib", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTDVEPVVSDFAATGRTGRRNALPDILGSTAGPGAADLPDKLAELTVGDDGEQGGESSSSTDPPKESTEGAKTEGS", "length": 76 }, "evidence": [ { "id": "A0A9J7FBB8", "url": "https://omabrowser.org/oma/group/A0A9J7FBB8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9C010-1", "protein_name": "cAMP-dependent protein kinase inhibitor beta", "gene_name": "PKIB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEALSVKEDAKEKDEKTTQDQLEKPQNEEK", "length": 78 }, "evidence": [ { "id": "A0A9J7FBB8", "url": "https://omabrowser.org/oma/group/A0A9J7FBB8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cAMP-dependent protein kinase inhibitor activity", "id": "GO:0004862", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004862", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FGG7-1", "uniprot_ac": "A0A9J7FGG7", "uniprot_id": "A0A9J7FGG7_CRIGR", "mass": { "chemical_mass": 59202.0, "monoisotopic_mass": 59202.0 }, "refseq": { "ac": "XP_027256801", "name": "zinc finger and BTB domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256801" }, "gene_names": [ { "name": "Zbtb2", "type": "recommended", "evidence": [ { "id": "A0A9J7FGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ] }, { "name": "Zbtb2", "type": "synonym", "evidence": [ { "id": "XP_027256801", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256801" } ] } ], "protein_names": [ { "name": "Zinc finger and BTB domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7/entry#names_and_taxonomy" } ] }, { "name": "zinc finger and BTB domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027256801", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256801" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256801" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zbtb2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7", "locus": {} } ], "crossref": [ { "id": "cd18193", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18193", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767625", "url": "https://www.ncbi.nlm.nih.gov/gene/100767625", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767625", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767625", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YSCHLCR", "url": "https://omabrowser.org/oma/group/YSCHLCR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FGG7", "url": "https://www.orthodb.org/?gene=A0A9J7FGG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GU14", "url": "https://www.orthodb.org/?gene=G3GU14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256801", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GU14", "url": "https://www.uniprot.org/uniprotkb/G3GU14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GU14-1", "url": "https://www.uniprot.org/uniprotkb/G3GU14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCTSRHTNQFLLHSPITLRCCLSIRPEIRISFCSGYCRTSFSEDGLRRAPYFFTIAVWSGSDTSLKGRQPAGSLCSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGTFSHPEQVFPLASSLYGIQIADHQLRQATKMNLGPEKLGREPRPQASRMNQEPVPETSQLSQLTTNLAQVNRTNMTPADPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPSSLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTAGPPGEGRGPLSLCNNAADLGKDALEVPEGGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQANKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSVLLGSGDSEVTESDRPVLASIKKEQETVLLD", "length": 532, "header": "tr|A0A9J7FGG7-1|A0A9J7FGG7_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zbtb2 PE=4 SV=1 CANONICAL=A0A9J7FGG7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FGG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7/entry", "sequence": { "sequence": "MCTSRHTNQFLLHSPITLRCCLSIRPEIRISFCSGYCRTSFSEDGLRRAPYFFTIAVWSGSDTSLKGRQPAGSLCSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGTFSHPEQVFPLASSLYGIQIADHQLRQATKMNLGPEKLGREPRPQASRMNQEPVPETSQLSQLTTNLAQVNRTNMTPADPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPSSLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTAGPPGEGRGPLSLCNNAADLGKDALEVPEGGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQANKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSVLLGSGDSEVTESDRPVLASIKKEQETVLLD", "length": 532, "header": "tr|A0A9J7FGG7-1|A0A9J7FGG7_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zbtb2 PE=4 SV=1 CANONICAL=A0A9J7FGG7-1" }, "locus": {} }, { "isoform_ac": "G3GU14-1", "url": "https://www.uniprot.org/uniprotkb/G3GU14/entry", "sequence": { "sequence": "MDLTNHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGTFSHPEQVFPLASSLYGIQIADHQLRQATKMNLGPEKLGREPRPQASRMNQEPVPETSQLSQLTTNLAQVNRTNMTPADPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPSSLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTAGPPGEGRGPLSLCNNAADLGKDALEVPEGGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQANKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSVLLGSGDSEVTESDRPVLASIKKEQETVLLD", "length": 514, "header": "tr|G3GU14-1|A0A9J7FGG7_CRIGR Computationally mapped isoform of Zinc finger and BTB domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zbtb2 PE=4 SV=1 CANONICAL=A0A9J7FGG7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GU14", "url": "https://www.uniprot.org/uniprotkb/G3GU14" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GU14", "url": "https://www.uniprot.org/uniprotkb/G3GU14" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767625", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767625", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ABS0-1", "protein_name": "Zinc finger and BTB domain containing 2", "gene_name": "Zbtb2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTPVPGLRAKQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGTFSHPEQVFPLASSLYGIQIADHQLRQATKMNLGPEKLGREPRPQASRMNQEPVPETSQLSQLTSNLAQVNRTNMTPADPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPSSLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTAGPPGEGRGPLSLCSNAADLGKDALEVPEAGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQANKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSVLLGSGDSEVTDPDHPVLAAIKKEQETVLLD", "length": 512 }, "evidence": [ { "id": "A0A9J7FGG7", "url": "https://omabrowser.org/oma/group/A0A9J7FGG7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNH4-1", "protein_name": "Zinc finger and BTB domain containing 2", "gene_name": "ZBTB2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGAFSHPDQVFPLASSLYGIQIADHQLRQATKITSAPEKLGREPRPQATRMSQEQGPEASQLSQLPSNLSQVNRTHMTPSDPLQTSLSPDLVSTPVPPPPPGEETNLEASSSDEQPAPLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTASQPGESRVPLSLCSNAADLGKDAMEVPEAGIISDSELQHISDSPIIDGQPHSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQTNKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALEEGRSILLGSGDSEVTEPDHPVLASIKKEQETVLLD", "length": 514 }, "evidence": [ { "id": "A0A9J7FGG7", "url": "https://omabrowser.org/oma/group/A0A9J7FGG7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1S7W1-1", "protein_name": "Zinc finger and BTB domain containing 2", "gene_name": "ZBTB2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGAFSHPDQVFPLASSLYGIQIADHQLRQATKIASAPDKLGREARPQPPRMSQEQVPEASQLSQLPANLTQVNRTHMTPSDPLQTSLSPDLVSTPVPPPPPGEETNLEASSSDEQPASLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFPASQPGESRVPLSLCSTTADLGKDAMEVPEAGMISDSELQHISDSPIIDGQPHSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNLLVQTNKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSILLGSGDSEVTEPDHPVLASIKKEQETVLLD", "length": 514 }, "evidence": [ { "id": "A0A9J7FGG7", "url": "https://omabrowser.org/oma/group/A0A9J7FGG7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z4W3-1", "protein_name": "Zinc finger and BTB domain-containing protein 2b", "gene_name": "zbtb2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MELANHGLILLQQLNAQREFGFLCDCTVAIGDVFFKAHKAVLAAFSNYFRMLFIHQDSDCVRLKPADIQPDIFSYLLNLMYTGKLATQLIDPARLEQGVKFLHAYPLIQEATLASHAPQAHPEVNLPLSSSLYGIQISDQQATLTNRLSARTPLSSPFDLEGTGLLDGKSSAASKATSLTRSGTKHRHAPSEPEVEASASISQFLRESAEPETSATEAPSCSLSANTILHVKPSIMRRTSSLRKHYTCHVCGGRFTQRGALREHLLLHTQAMLPLVLESVGATSPMLSGGAATPEVEEVLRGSEAAAATPIIVDVPSDSEQHSYSKDSPHPETAIPVPTTTAVSLCTAQPQADTPPPSDIADIDNLEGAADMEREVKRRKYECSTCGRKFIQKSHWREHMYIHTGKPYRCSACGKSFCRANQAARHVCMNLGSEPAYTMVDRQSMELCAADDSSQMEAMFLGSSGRPYKCNVCEMTFSSPNEVIKHLCFNQGALSGGAAGEMGVSGMNSDSLAKDEGSDSSNGGPLMTPIKTEEVFVE", "length": 538 }, "evidence": [ { "id": "A0A9J7FGG7", "url": "https://omabrowser.org/oma/group/A0A9J7FGG7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N680-1", "protein_name": "Zinc finger and BTB domain-containing protein 2", "gene_name": "ZBTB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGAFSHPDQVFPLASSLYGIQIADHQLRQATKIASAPEKLGRDPRPQTSRISQEQVPEASQLSQLTSNLAQVNRTNMTPSDPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPASLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTSSQQGESRVPLTLCSNAADLGKDAMEVPEAGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQTNKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSILLGSGDSEVTEPDHPVLASIKKEQETVLLD", "length": 514 }, "evidence": [ { "id": "A0A9J7FGG7", "url": "https://omabrowser.org/oma/group/A0A9J7FGG7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FGG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGG7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 272, "end_pos": 296, "start_aa": "Tyr", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 206, "end_pos": 208 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 265, "end_pos": 267 }, { "start_pos": 430, "end_pos": 432 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FEP6-1", "uniprot_ac": "A0A9J7FEP6", "uniprot_id": "A0A9J7FEP6_CRIGR", "mass": { "chemical_mass": 41226.0, "monoisotopic_mass": 41226.0 }, "refseq": { "ac": "XP_027247534", "name": "ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247534" }, "gene_names": [ { "name": "Atpaf1", "type": "recommended", "evidence": [ { "id": "A0A9J7FEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6" } ] }, { "name": "Atpaf1", "type": "synonym", "evidence": [ { "id": "XP_027247534", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247534" } ] } ], "protein_names": [ { "name": "ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027247534", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247534" }, { "id": "A0A9J7FEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613647.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247534", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247534" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Atpaf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FEP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FEP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770122", "url": "https://www.ncbi.nlm.nih.gov/gene/100770122", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770122", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770122", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MFYYKTD", "url": "https://omabrowser.org/oma/group/MFYYKTD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FEP6", "url": "https://www.orthodb.org/?gene=A0A9J7FEP6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GYU5", "url": "https://www.orthodb.org/?gene=G3GYU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13126", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13126", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13126:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13126:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247534", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247534", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FEP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GYU5", "url": "https://www.uniprot.org/uniprotkb/G3GYU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GYU5-1", "url": "https://www.uniprot.org/uniprotkb/G3GYU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQARGPGAEADAPEEEEGEARAAMAAVVSAAGGACPAVLQVAGLYRGLCAVRSRALGLGFVSPAQLRVFPVRRGSGSPSGGADGNGVSELEANPFYDRYRDKIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIKCMEQKTHASGKQPVSKGFTKDKTLSSIFNIEMVKDKTAEEIQQIWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQWTGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTFLIHREKEVISASYCLTVTVDSRPGAQKGLCFPDCYSQTAQSYFSHFLFLLNCFCITLNQKSLIQNMYLPLIEIKSAEKMVLRRPHF", "length": 369, "header": "tr|A0A9J7FEP6-1|A0A9J7FEP6_CRIGR Isoform 1 of ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Atpaf1 PE=3 SV=1 CANONICAL=A0A9J7FEP6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FEP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6/entry", "sequence": { "sequence": "MEQARGPGAEADAPEEEEGEARAAMAAVVSAAGGACPAVLQVAGLYRGLCAVRSRALGLGFVSPAQLRVFPVRRGSGSPSGGADGNGVSELEANPFYDRYRDKIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIKCMEQKTHASGKQPVSKGFTKDKTLSSIFNIEMVKDKTAEEIQQIWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQWTGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTFLIHREKEVISASYCLTVTVDSRPGAQKGLCFPDCYSQTAQSYFSHFLFLLNCFCITLNQKSLIQNMYLPLIEIKSAEKMVLRRPHF", "length": 369, "header": "tr|A0A9J7FEP6-1|A0A9J7FEP6_CRIGR Isoform 1 of ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Atpaf1 PE=3 SV=1 CANONICAL=A0A9J7FEP6-1" }, "locus": {} }, { "isoform_ac": "G3GYU5-1", "url": "https://www.uniprot.org/uniprotkb/G3GYU5/entry", "sequence": { "sequence": "MEQARGPGAEADAPEEEEGEARAAMAAVVSAAGGACPAVLQVAGLYRGLCAVRSRALGLGFVSPAQLRVFPVRRGSGSPSGGADGNGVSELEANPFYDRYRDKIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIKCMEQKTHASGKQPVSKGFTKDKTLSSIFNIEMVKDKTAEEIQQIWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQWTGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFYATDRKEIFGLVETFNFRPNEFKYMSVIAELEQSGLGAELKCAQNQDKT", "length": 348, "header": "tr|G3GYU5-1|A0A9J7FEP6_CRIGR Computationally mapped isoform of ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Atpaf1 PE=3 SV=1 CANONICAL=A0A9J7FEP6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GYU5", "url": "https://www.uniprot.org/uniprotkb/G3GYU5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GYU5", "url": "https://www.uniprot.org/uniprotkb/G3GYU5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770122", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770122", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZT65-1", "protein_name": "ATP synthase mitochondrial F1 complex assembly factor 1", "gene_name": "ATPAF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGPLAQGWGLGVALRSRAALRPLGLLAPPCRGATAPQCRRATGPGEEVLEENPFYGKYRHKIQELRRSSPDVFESRMEKRNEVKKQPVGFSKQSEFVRCMEEKAEGLSTKTSKGGFTRDKTLDSILNVEMVKEKSAEEIEQIWNRYFSAKDTVYAVIPAEKFDLIWKRAQKCPSVRLAEIHSVFLYALPRKEGYEFFVGQWSGTELHFTSLINIQTQGEAAPSQLVLYHYPELQEEKGIVLMTAEMDSKFLVVHEAQCLANQVQLFYATERSETYELVETFNHRSSEFKYMSVIAELEHSGLGKALRPNQVSDKS", "length": 316 }, "evidence": [ { "id": "A0A9J7FEP6", "url": "https://omabrowser.org/oma/group/A0A9J7FEP6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZY50-1", "protein_name": "ATP synthase mitochondrial F1 complex assembly factor 1", "gene_name": "Atpaf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEQARGPGAEADAPEEEEGEAQEAMAAVVSAAGGACPAVLQVAGLYRGLCAVRSRALGLGFVSPAQLRVFPVRRGSGLSSGGTDGGGVSELETNPFYDRYRDKIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIRCVEQKTDALGKQPVSKGFTKDKTLSSVFNVEMVKDKTGEEIKQIWQQYFSAKDTVYAVIPKEKFDVIWNRAQSCPTFLCALPRRDGYEFFVGQWTGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFYATDRKEIYGLVETFNFRPNEFKYMSVIAELEQSGLGAELKCAQTQDKT", "length": 348 }, "evidence": [ { "id": "A0A9J7FEP6", "url": "https://omabrowser.org/oma/group/A0A9J7FEP6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5TC12-1", "protein_name": "ATP synthase mitochondrial F1 complex assembly factor 1", "gene_name": "ATPAF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVVVAAAGGAGPAVLQVAGLYRGLCAVRSRALGLGLVSPAQLRVFPVRPGSGRPEGGADSSGVGAEAELQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGHSRQGDFIKCVEQKTDALGKQSVNRGFTKDKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINIQTRGEAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFYATDRKETYGLVETFNLRPNEFKYMSVIAELEQSGLGAELKCAQNQNKT", "length": 328 }, "evidence": [ { "id": "A0A9J7FEP6", "url": "https://omabrowser.org/oma/group/A0A9J7FEP6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q811I0-1", "protein_name": "ATP synthase mitochondrial F1 complex assembly factor 1", "gene_name": "Atpaf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVVSAAGGACPAVLQVAGLYRGLCAVRSRALGLGFVSPAQLRVFPVRRGSGLPPEGADGSGVSELEANPFYDRYRDKIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIKCMEQKTDALGKQPVSKGFTKDKTLSSVFNVEMVKDKTAEEIKQIWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQWTGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVVEAQCIANQVQLFYATDRKEIYGLVETFNFRPNEFKYMSVIAELEQSGLGAELKRAQNQDKT", "length": 324 }, "evidence": [ { "id": "A0A9J7FEP6", "url": "https://omabrowser.org/oma/group/A0A9J7FEP6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VES8-1", "protein_name": "ATP synthase mitochondrial F1 complex assembly factor 1", "gene_name": "anon2A5", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MACAKKLLFRVFLNNSLTANRTITMSAARRAEEAIEKLKEDNPYYSKYASKIAKLQQTSAEEFLDRVERVVNPIKDGQSQARSYSELLNPKQKLQAEQAAELPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENLMARAKEHPVFLLPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPECLTVVHYTEVQDKGVVLMRGEYDTKVLTAQEAQCLANELQMFYLKPDEGKLRLLNTFTRKPDEFKHMDLIKEVENIQLV", "length": 278 }, "evidence": [ { "id": "A0A9J7FEP6", "url": "https://omabrowser.org/oma/group/A0A9J7FEP6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial proton-transporting ATP synthase complex assembly", "id": "GO:0033615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F5M9-1", "uniprot_ac": "A0A9J7F5M9", "uniprot_id": "A0A9J7F5M9_CRIGR", "mass": { "chemical_mass": 48877.0, "monoisotopic_mass": 48877.0 }, "refseq": { "ac": "XP_027251120", "name": "pleckstrin homology domain-containing family A member 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251120" }, "gene_names": [ { "name": "Plekha2", "type": "recommended", "evidence": [ { "id": "A0A9J7F5M9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ] }, { "name": "Plekha2", "type": "synonym", "evidence": [ { "id": "XP_027251120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251120" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family A member 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F5M9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family A member 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027251120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251120" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251120" } ] }, { "annotation": "Binds specifically to phosphatidylinositol 3,4-diphosphate (PtdIns3,4P2), but not to other phosphoinositides. May recruit other proteins to the plasma membrane.", "evidence": [ { "database": "UniProtKB", "id": "G3H1K5", "url": "https://www.uniprot.org/uniprotkb/G3H1K5#function" }, { "database": "UniProtKB", "id": "ARBA00059661", "url": "https://www.uniprot.org/uniprotkb/ARBA00059661#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plekha2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9", "locus": {} } ], "crossref": [ { "id": "cd13270", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13270", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773875", "url": "https://www.ncbi.nlm.nih.gov/gene/100773875", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051707", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051707", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773875", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773875", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KCHPKEM", "url": "https://omabrowser.org/oma/group/KCHPKEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F5M9", "url": "https://www.orthodb.org/?gene=A0A9J7F5M9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JCR0", "url": "https://www.orthodb.org/?gene=A0A9J7JCR0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H1K5", "url": "https://www.orthodb.org/?gene=G3H1K5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14336", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14336", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14336:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14336:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251120", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F952", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F952", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F952-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F952-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H1K5", "url": "https://www.uniprot.org/uniprotkb/G3H1K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H1K5-1", "url": "https://www.uniprot.org/uniprotkb/G3H1K5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTLFTFQPSLAVGVLIGPASKPLLASDSIVAAVWCEDVCAWVLSLESDCWMSSPTCGHTVSCGSFVLFLCLKMAAAAWHSHQQVVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGAVPMATEVLRNLTAPPNPDKKPQMAYKTEIIGGVVVQTPISQNGGDGQEGTEPGSHAFLRRSQSYIPTSGCRPSTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTILLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTFYVQADSPEDMHSWIQEIGAAVQALKCHPREPSFSRSISLTRPGSSSLPSGPNSILRRRPAVEEKRALCKAPSVASSWQPWTPVPQAGEKLLSAENVPEDSLFMPHPGESNATGVLVSSRVRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 443, "header": "tr|A0A9J7F5M9-1|A0A9J7F5M9_CRIGR Isoform 1 of Pleckstrin homology domain-containing family A member 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekha2 PE=4 SV=1 CANONICAL=A0A9J7F5M9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9/entry", "sequence": { "sequence": "MDTLFTFQPSLAVGVLIGPASKPLLASDSIVAAVWCEDVCAWVLSLESDCWMSSPTCGHTVSCGSFVLFLCLKMAAAAWHSHQQVVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGAVPMATEVLRNLTAPPNPDKKPQMAYKTEIIGGVVVQTPISQNGGDGQEGTEPGSHAFLRRSQSYIPTSGCRPSTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTILLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTFYVQADSPEDMHSWIQEIGAAVQALKCHPREPSFSRSISLTRPGSSSLPSGPNSILRRRPAVEEKRALCKAPSVASSWQPWTPVPQAGEKLLSAENVPEDSLFMPHPGESNATGVLVSSRVRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 443, "header": "tr|A0A9J7F5M9-1|A0A9J7F5M9_CRIGR Isoform 1 of Pleckstrin homology domain-containing family A member 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekha2 PE=4 SV=1 CANONICAL=A0A9J7F5M9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F952-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F952/entry", "sequence": { "sequence": "MLKRDGSRDVLRGVAVFGLDQQAYVVPASCRQNLADTSRPGVLREQEDPGWIERELREQCPGRDGDCMWIGPMVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGAVPMATEVLRNLTAPPNPDKKPQMAYKTEIIGGVVVQTPISQNGGDGQEGTEPGSHAFLRRSQSYIPTSGCRPSTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTILLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTFYVQADSPEDMHSWIQEIGAAVQALKCHPREPSFSRSISLTRPGSSSLPSGPNSILRRRPAVEEKRALCKAPSVASSWQPWTPVPQAGEKLLSAENVPEDSLFMPHPGESNATGVLVSSRVRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 431, "header": "tr|A0A9J7F952-1|A0A9J7F952_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Plekha2 PE=4 SV=1 CANONICAL=A0A9J7F5M9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCR0/entry", "sequence": { "sequence": "MVCFVPDLLEVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGAVPMATEVLRNLTAPPNPDKKPQMAYKTEIIGGVVVQTPISQNGGDGQEGTEPGSHAFLRRSQSYIPTSGCRPSTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTILLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTFYVQADSPEDMHSWIQEIGAAVQALKCHPREPSFSRSISLTRPGSSSLPSGPNSILRRRPAVEEKRALCKAPSVASSWQPWTPVPQAGEKLLSAENVPEDSLFMPHPGESNATGVLVSSRVRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 368, "header": "tr|A0A9J7JCR0-1|A0A9J7JCR0_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Plekha2 PE=4 SV=1 CANONICAL=A0A9J7F5M9-1" }, "locus": {} }, { "isoform_ac": "G3H1K5-1", "url": "https://www.uniprot.org/uniprotkb/G3H1K5/entry", "sequence": { "sequence": "MPYVDRQNRICGFLDIEDNENTGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGAVPMATEVLRNLTAPPNPDKKPQMAYKTEIIGGVVVQTPISQNGGDGQEGTEPGSHAFLRRSQSYIPTSGCRPSTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTILLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTFYVQADSPEDMHSWIQEIGAAVQALKCHPREPSFSRSISLTRPGSSSLPSGPNSILRRRPAVEEKRALCKAPSVASSWQPWTPVPQAGEKLLSAENVPEDSLFMPHPGESNATGVLVSSRVRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 424, "header": "tr|G3H1K5-1|A0A9J7F5M9_CRIGR Computationally mapped isoform of Pleckstrin homology domain-containing family A member 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Plekha2 PE=4 SV=1 CANONICAL=A0A9J7F5M9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H1K5", "url": "https://www.uniprot.org/uniprotkb/G3H1K5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H1K5", "url": "https://www.uniprot.org/uniprotkb/G3H1K5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773875", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773875", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BNI0-1", "protein_name": "Pleckstrin homology domain containing A2", "gene_name": "PLEKHA2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMDNPQNLAIGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNHASKITVPKGGNLPLTTEVLKSLTAPPAVEKKPQVAYKTEIIGGVVVHTPINQNGGDGQEASEPGSHAILRRSQSYIPTTGCRVPTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTLCYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTFYVQADSPEDMHSWIKEIGAAVQALKCHPREMSFSRSISLTRPGSSSLSGGPNSVLCRGRLPGEERKALCKAPSVASSWQPWTPVPAGEKPPPTEEMPEDSLFAPRLGETSTSGALASSRIRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 424 }, "evidence": [ { "id": "A0A9J7F5M9", "url": "https://omabrowser.org/oma/group/A0A9J7F5M9/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0Z1B3-1", "protein_name": "Pleckstrin homology domain containing A2", "gene_name": "PLEKHA2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPYLDRQNRICGFLDIEENETCGKFLRRYFILDTQANCLLWYMDNPQNLAMGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQASDQKDLQDWVEALNRASKITGHGCILAGSTNGGAHGSVAITLLLSQVPKGGAAPPTTEVTKPPAVLQAQDRKPPVAYKTEIIGGVVVHTPISISQNGGDGAEGSDPTAHPLLRRSQSYIPTSATKPPAGPPAIKSGFCVKQGNVRKSWKRRYFVLDEFSISYYKCEQDKEPLRSILLKDICKTHECLVKSGDLLMRDNLFEIITSSRTFYIQADSPEDMHSWIRAITGAVQALKTRPREISFMRSCSMTKPGGSSVPSQPQERRAPCKAPATAWQPWTPVPQDRRQPEVPGRDAVFVPALTERDGAPAPGQRLRHRSEPQHLKEKAFPFDLDDDSIRTSDV", "length": 436 }, "evidence": [ { "id": "A0A9J7F5M9", "url": "https://omabrowser.org/oma/group/A0A9J7F5M9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LQQ5-1", "protein_name": "Pleckstrin homology domain containing A2", "gene_name": "Plekha2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SRDCLGGHLRVGEKCAAGQAGDTARRRRALGPEATLAVQSANLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGTVPVATEVLKNLTAPPTLEKKPQVAYKTEIIGGVVVQTPISQNGGDGPEGSEPGTHAFLRRSQSYVPTSGCRPPSGPSLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTIPLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTFYVQADSPEDMRSWIEGIGAAVQALKCHPREPSFSRSISLPRPGSSGLTSGPNSILSRRRPPAEEKRALCKAPSMASSWQPWTPVPQAKEKLLSAENAPEDSLFMPNPGESNATGALASSRVRHRSEPQHPKEKPFLFNLDDESIRTSDV", "length": 419 }, "evidence": [ { "id": "A0A9J7F5M9", "url": "https://omabrowser.org/oma/group/A0A9J7F5M9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58G5P4-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "plekha2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEALERNCCYDKQCFADLGQDMPYLDRQNRTCGFLDIEENENSDRFSRRYFILDTDKNYLLWYMDNPQNLPVGTEHVGSLRLSYISKVNEASLKQKPKAEFCFVIHALSRRYFLQANDALDLKEWVIAVNNATKITVPKASPVCQSSDVTNVSNPSQSAPRQAYTTAIVGGVVVQTPVQQNDSEDVFMADPGAHVPLRRCQSARPNALRSGYCVKQGNVRKSWKRRFFILDDQTVSYYKSEMDKEPLRSIRLRDVLKVNECLVKSGDLLSRDNLFEIITSARTFYIQTDTPEDMKGWIMDIASKIQDFRGPSKPRSSMKVFSSQRKPQLIKSCSTADSWQPWTPVPSQDKHLKEEGQREGPYSSLPSLSLASHIIQSQQSHQSRQRHHSQPQPAPSSTDFPENLDSLRTTDV", "length": 412 }, "evidence": [ { "id": "A0A9J7F5M9", "url": "https://omabrowser.org/oma/group/A0A9J7F5M9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3ZBA3-1", "protein_name": "Pleckstrin homology domain-containing family A member 2", "gene_name": "PLEKHA2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANCLLWYMDNPQNLAIGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGNLPLTTEVLKSLATPLALEKKPQVAYKTEIIGGVVVHTPINQNGGDGQEVGEPGSHAILRRSQSYIPTTGCRGPTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTFYVQADSPEDMHSWIKEIGAAVQALKCHPREMSFSRSISLTRPGSSSLSGGPNSILCRGRAPGEERKTLCKAPSLASSWQPWTPVPQAGEKLLPTEETAEDSLFTPRLGESSTSAVLPSSRIRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 425 }, "evidence": [ { "id": "A0A9J7F5M9", "url": "https://omabrowser.org/oma/group/A0A9J7F5M9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9ERS5-1", "protein_name": "Pleckstrin homology domain-containing family A member 2", "gene_name": "Plekha2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPYVDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKAGTVPLATEVLKNLTAPPTLEKKPQVAYKTEIIGGVVVQTPISQNGGDGQEGCEPGTHAFLRRSQSYIPTSGCRPSTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTIPLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTFYVQADSPEDMHSWIEGIGAAVQALKCHPREPSFSRSISLTRPGSSTLTSAPNSILSRRRPPAEEKRGLCKAPSVASSWQPWTPVPQAEEKPLSVEHAPEDSLFMPNPGESTATGVLASSRVRHRSEPQHPKEKPFVFNLDDENIRTSDV", "length": 425 }, "evidence": [ { "id": "A0A9J7F5M9", "url": "https://omabrowser.org/oma/group/A0A9J7F5M9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HB19-1", "protein_name": "Pleckstrin homology domain-containing family A member 2", "gene_name": "PLEKHA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPYVDRQNRICGFLDIEEHENSGKFLRRYFILDTQANCLLWYMDNPQNLAMGAGAVGALQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDMKDWVEALNQASKITVPKGGGLPMTTEVLKSLAAPPALEKKPQVAYKTEIIGGVVVHTPISQNGGDGQEGSEPGSHTILRRSQSYIPTSGCRASTGPPLIKSGYCVKQGNVRKSWKRRFFALDDFTICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTFYVQADSPEDMHSWIKEIGAAVQALKCHPRETSFSRSISLTRPGSSSLSSGPNSILCRGRPPLEEKKALCKAPSVASSWQPWTPVPQAGEKLLPPGDTSEDSLFTPRPGEGSAPGVLPSSRIRHRSEPQHPKEKPFMFNLDDENIRTSDV", "length": 425 }, "evidence": [ { "id": "A0A9J7F5M9", "url": "https://omabrowser.org/oma/group/A0A9J7F5M9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "phosphatidylinositol-3,4-bisphosphate binding", "id": "GO:0043325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" }, { "name": "laminin binding", "id": "GO:0043236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043236", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" }, { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" }, { "name": "PDZ domain binding", "id": "GO:0030165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" }, { "name": "fibronectin binding", "id": "GO:0001968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001968", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of cell-matrix adhesion", "id": "GO:0001954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001954", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F5M9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5M9" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 132, "start_aa": "Phe", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 405, "end_pos": 407 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F6K9-1", "uniprot_ac": "A0A9J7F6K9", "uniprot_id": "A0A9J7F6K9_CRIGR", "mass": { "chemical_mass": 171046.0, "monoisotopic_mass": 171046.0 }, "refseq": { "ac": "XP_027252370", "name": "disco-interacting protein 2 homolog B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252370" }, "gene_names": [ { "name": "Dip2b", "type": "recommended", "evidence": [ { "id": "A0A9J7F6K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K9" } ] }, { "name": "Dip2b", "type": "synonym", "evidence": [ { "id": "XP_027252370", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252370" } ] } ], "protein_names": [ { "name": "Disco-interacting protein 2 homolog B isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F6K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K9/entry#names_and_taxonomy" } ] }, { "name": "disco-interacting protein 2 homolog B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027252370", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252370" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252370", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252370" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6K9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dip2b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K9", "locus": {} } ], "crossref": [ { "id": "cd05905", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05905", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750591", "url": "https://www.ncbi.nlm.nih.gov/gene/100750591", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750591", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750591", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F6K9", "url": "https://www.orthodb.org/?gene=A0A9J7F6K9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22754", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22754", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22754:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22754:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23024", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23024", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252370", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252370", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QHD1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QHD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6K9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSTGQKDKNQTPAPTAAQTSAPSKYHRTRSGGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPDTSSASEDEGSLRRQAALSAALQQSLQNAESWINRSIQGSSTSSSASSTLSHGEVKGTSGSLADVFANTRIENVSAPPDVTATTSSSSSSLRPANIDLPPSGIVKGMHKGSNRSSLMDTADGVPVNSRVSTKIQQLLSTLKRPKRPPLKEFFVDDSEEIVEGIPQPDPNQPKPEGRQMTPVKGEPLGVICNWPPALESALQRWGSTQAKCPCLTGLDVSGKPVYTLTYGKLWSRSLKLAYTLLNKLGTKNEPVLKPGDRVALVYPNNDPVMFMVAFYGCLLAEVIPVPIEVPLTRKDAGGQQIGFLLGSCGIALALTSEICLKGLPKTQNGEIVQFKGWPRLKWVVTDSKYLSKPPKDWQPHISPAGTEPAYIEYKTSKEGSVMGVTVSRLAMLSHCQALSQACNYSEGEAVVNVLDFKKDAGLWHGMFANVMNKMHTISVPYSVMKTCPLSWVQRVHAHKAKVALVKCRDLHWAMMAHRDQRDVSLSSLRMLIVTDGANPWSVSSCDAFLSLFQSHGLKPEAICPCATSAEAMTVAIRRPGVPGAPLPGRAILSMNGLSYGVIRVNTEDKNSALTVQDVGHVMPGGMMCIVKPDGLPQLCKTDEIGEICVSSRTGGMMYFGLAGVTKNTFEVIPVASSGSPVGDVPFIRSGLLGFVGPGSLVFVVGKMDGLLMVSGRRHNADDIVATGLAVESIKTVYRGRIAVFSVSVFYDERIVVVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHISQTKQLFLEGSLHPCNILMCPHTCVTNLPKPRQKQPGVGPASVMVGNLVAGKRIAQAAGRDLGQIEENDLVRKHQFLAEILQWRAQATPDHVLFMLLNAKGTTVCTASCLQLHKRAERIASVLGDKGHLNAGDNVVLLYPPGIELIAAFYGCLYAGCIPVTVRPPHAQNLTATLPTVRMIVDVSKAACILTTQTLMRLLKSREAAAAVDVKTWPTIIDTDDLPRKRLPQLYKPPTPEMLAYLDFSVSTTGMLTGVKMSHSAVNALCRAIKLQCELYSSRQIAICLDPYCGLGFALWCLCSVYSGHQSILIPPLELENNLFLWLATVNQYKIRDTFCSYSVMELCTKGLGNQVEVLKTRGINLSCIRTCVVVAEERPRITLQQSFSKLFKDIGLSPRAVSTTFGARVNVAICLQGTSGPDPTTVYVDLKSLRHDRVRLVERGAPQSLLLSESGKILPGVKVVIVNPETKGPVGDSHLGEIWVNSPHTASGYYTIYDSETLQADHFNTRLSFGDAAQTLWARTGYLGFVRRTELTAATGERHDALYVVGALDETLELRGLRYHPIDIETSVSRVHRSIAECAVFTWTNLLVVVVELCGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDPGVIPINSRGEKQRMHLRDSFLADQLDPIYVAYNM", "length": 1574, "header": "tr|A0A9J7F6K9-1|A0A9J7F6K9_CRIGR Isoform 1 of Disco-interacting protein 2 homolog B isoform X2 OS=Cricetulus griseus OX=10029 GN=Dip2b PE=3 SV=1 CANONICAL=A0A9J7F6K9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QHD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHD1/entry", "sequence": { "sequence": "MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSTGQKDKNQTPAPTAAQTSAPSKYHRTRSGGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPDTSSASEDEGSLRRQAALSAALQQSLQNAESWINRSIQGSSTSSSASSTLSHGEVKGTSGSLADVFANTRIENVSAPPDVTATTSSSSSSLRPANIDLPPSGIVKGMHKGSNRSSLMDTADGVPVNSRVSTKIQQLLSTLKRPKRPPLKEFFVDDSEEIVEVPQPDPNQPKPEGRQMTPVKGEPLGVICNWPPALESALQRWGSTQAKCPCLTGLDVSGKPVYTLTYGKLWSRSLKLAYTLLNKLGTKNEPVLKPGDRVALVYPNNDPVMFMVAFYGCLLAEVIPVPIEVPLTRKDAGGQQIGFLLGSCGIALALTSEICLKGLPKTQNGEIVQFKGWPRLKWVVTDSKYLSKPPKDWQPHISPAGTEPAYIEYKTSKEGSVMGVTVSRLAMLSHCQALSQACNYSEGEAVVNVLDFKKDAGLWHGMFANVMNKMHTISVPYSVMKTCPLSWVQRVHAHKAKVALVKCRDLHWAMMAHRDQRDVSLSSLRMLIVTDGANPWSVSSCDAFLSLFQSHGLKPEAICPCATSAEAMTVAIRRPGVPGAPLPGRAILSMNGLSYGVIRVNTEDKNSALTVQDVGHVMPGGMMCIVKPDGLPQLCKTDEIGEICVSSRTGGMMYFGLAGVTKNTFEVIPVASSGSPVGDVPFIRSGLLGFVGPGSLVFVVGKMDGLLMVSGRRHNADDIVATGLAVESIKTVYRGRIAVFSVSVFYDERIVVVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHISQTKQLFLEGSLHPCNILMCPHTCVTNLPKPRQKQPGVGPASVMVGNLVAGKRIAQAAGRDLGQIEENDLVRKHQFLAEILQWRAQATPDHVLFMLLNAKGTTVCTASCLQLHKRAERIASVLGDKGHLNAGDNVVLLYPPGIELIAAFYGCLYAGCIPVTVRPPHAQNLTATLPTVRMIVDVSKAACILTTQTLMRLLKSREAAAAVDVKTWPTIIDTDDLPRKRLPQLYKPPTPEMLAYLDFSVSTTGMLTGVKMSHSAVNALCRAIKLQCELYSSRQIAICLDPYCGLGFALWCLCSVYSGHQSILIPPLELENNLFLWLATVNQYKIRDTFCSYSVMELCTKGLGNQVEVLKTRGINLSCIRTCVVVAEERPRITLQQSFSKLFKDIGLSPRAVSTTFGARVNVAICLQGTSGPDPTTVYVDLKSLRHDRVRLVERGAPQSLLLSESGKILPGVKVVIVNPETKGPVGDSHLGEIWVNSPHTASGYYTIYDSETLQADHFNTRLSFGDAAQTLWARTGYLGFVRRTELTAATGERHDALYVVGALDETLELRGLRYHPIDIETSVSRVHRSIAECAVFTWTNLLVVVVELCGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDPGVIPINSRGEKQRMHLRDSFLADQLDPIYVAYNM", "length": 1573, "header": "tr|A0A8C2QHD1-1|A0A9J7F6K9_CRIGR Computationally mapped isoform of Disco-interacting protein 2 homolog B isoform X2 OS=Cricetulus griseus OX=10029 GN=Dip2b PE=3 SV=1 CANONICAL=A0A9J7F6K9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K9/entry", "sequence": { "sequence": "MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSTGQKDKNQTPAPTAAQTSAPSKYHRTRSGGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPDTSSASEDEGSLRRQAALSAALQQSLQNAESWINRSIQGSSTSSSASSTLSHGEVKGTSGSLADVFANTRIENVSAPPDVTATTSSSSSSLRPANIDLPPSGIVKGMHKGSNRSSLMDTADGVPVNSRVSTKIQQLLSTLKRPKRPPLKEFFVDDSEEIVEGIPQPDPNQPKPEGRQMTPVKGEPLGVICNWPPALESALQRWGSTQAKCPCLTGLDVSGKPVYTLTYGKLWSRSLKLAYTLLNKLGTKNEPVLKPGDRVALVYPNNDPVMFMVAFYGCLLAEVIPVPIEVPLTRKDAGGQQIGFLLGSCGIALALTSEICLKGLPKTQNGEIVQFKGWPRLKWVVTDSKYLSKPPKDWQPHISPAGTEPAYIEYKTSKEGSVMGVTVSRLAMLSHCQALSQACNYSEGEAVVNVLDFKKDAGLWHGMFANVMNKMHTISVPYSVMKTCPLSWVQRVHAHKAKVALVKCRDLHWAMMAHRDQRDVSLSSLRMLIVTDGANPWSVSSCDAFLSLFQSHGLKPEAICPCATSAEAMTVAIRRPGVPGAPLPGRAILSMNGLSYGVIRVNTEDKNSALTVQDVGHVMPGGMMCIVKPDGLPQLCKTDEIGEICVSSRTGGMMYFGLAGVTKNTFEVIPVASSGSPVGDVPFIRSGLLGFVGPGSLVFVVGKMDGLLMVSGRRHNADDIVATGLAVESIKTVYRGRIAVFSVSVFYDERIVVVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHISQTKQLFLEGSLHPCNILMCPHTCVTNLPKPRQKQPGVGPASVMVGNLVAGKRIAQAAGRDLGQIEENDLVRKHQFLAEILQWRAQATPDHVLFMLLNAKGTTVCTASCLQLHKRAERIASVLGDKGHLNAGDNVVLLYPPGIELIAAFYGCLYAGCIPVTVRPPHAQNLTATLPTVRMIVDVSKAACILTTQTLMRLLKSREAAAAVDVKTWPTIIDTDDLPRKRLPQLYKPPTPEMLAYLDFSVSTTGMLTGVKMSHSAVNALCRAIKLQCELYSSRQIAICLDPYCGLGFALWCLCSVYSGHQSILIPPLELENNLFLWLATVNQYKIRDTFCSYSVMELCTKGLGNQVEVLKTRGINLSCIRTCVVVAEERPRITLQQSFSKLFKDIGLSPRAVSTTFGARVNVAICLQGTSGPDPTTVYVDLKSLRHDRVRLVERGAPQSLLLSESGKILPGVKVVIVNPETKGPVGDSHLGEIWVNSPHTASGYYTIYDSETLQADHFNTRLSFGDAAQTLWARTGYLGFVRRTELTAATGERHDALYVVGALDETLELRGLRYHPIDIETSVSRVHRSIAECAVFTWTNLLVVVVELCGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDPGVIPINSRGEKQRMHLRDSFLADQLDPIYVAYNM", "length": 1574, "header": "tr|A0A9J7F6K9-1|A0A9J7F6K9_CRIGR Isoform 1 of Disco-interacting protein 2 homolog B isoform X2 OS=Cricetulus griseus OX=10029 GN=Dip2b PE=3 SV=1 CANONICAL=A0A9J7F6K9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDL9/entry", "sequence": { "sequence": "MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSTGQKDKNQTPAPTAAQTSAPSKYHRTRSGGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPENVSAPPDVTATTSSSSSSLRPANIDLPPSGIVKGMHKGSNRSSLMDTADGVPVNSRVSTKIQQLLSTLKRPKRPPLKEFFVDDSEEIVEGIPQPDPNQPKPEGRQMTPVKGEPLGVICNWPPALESALQRWGSTQAKCPCLTGLDVSGKPVYTLTYGKLWSRSLKLAYTLLNKLGTKNEPVLKPGDRVALVYPNNDPVMFMVAFYGCLLAEVIPVPIEVPLTRKDAGGQQIGFLLGSCGIALALTSEICLKGLPKTQNGEIVQFKGWPRLKWVVTDSKYLSKPPKDWQPHISPAGTEPAYIEYKTSKEGSVMGVTVSRLAMLSHCQALSQACNYSEGEAVVNVLDFKKDAGLWHGMFANVMNKMHTISVPYSVMKTCPLSWVQRVHAHKAKVALVKCRDLHWAMMAHRDQRDVSLSSLRMLIVTDGANPWSVSSCDAFLSLFQSHGLKPEAICPCATSAEAMTVAIRRPGVPGAPLPGRAILSMNGLSYGVIRVNTEDKNSALTVQDVGHVMPGGMMCIVKPDGLPQLCKTDEIGEICVSSRTGGMMYFGLAGVTKNTFEVIPVASSGSPVGDVPFIRSGLLGFVGPGSLVFVVGKMDGLLMVSGRRHNADDIVATGLAVESIKTVYRGRIAVFSVSVFYDERIVVVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHISQTKQLFLEGSLHPCNILMCPHTCVTNLPKPRQKQPGVGPASVMVGNLVAGKRIAQAAGRDLGQIEENDLVRKHQFLAEILQWRAQATPDHVLFMLLNAKGTTVCTASCLQLHKRAERIASVLGDKGHLNAGDNVVLLYPPGIELIAAFYGCLYAGCIPVTVRPPHAQNLTATLPTVRMIVDVSKAACILTTQTLMRLLKSREAAAAVDVKTWPTIIDTDDLPRKRLPQLYKPPTPEMLAYLDFSVSTTGMLTGVKMSHSAVNALCRAIKLQCELYSSRQIAICLDPYCGLGFALWCLCSVYSGHQSILIPPLELENNLFLWLATVNQYKIRDTFCSYSVMELCTKGLGNQVEVLKTRGINLSCIRTCVVVAEERPRITLQQSFSKLFKDIGLSPRAVSTTFGARVNVAICLQGTSGPDPTTVYVDLKSLRHDRVRLVERGAPQSLLLSESGKILPGVKVVIVNPETKGPVGDSHLGEIWVNSPHTASGYYTIYDSETLQADHFNTRLSFGDAAQTLWARTGYLGFVRRTELTAATGERHDALYVVGALDETLELRGLRYHPIDIETSVSRVHRSIAECAVFTWTNLLVVVVELCGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDPGVIPINSRGEKQRMHLRDSFLADQLDPIYVAYNM", "length": 1503, "header": "tr|A0A9J7JDL9-1|A0A9J7JDL9_CRIGR Computationally mapped isoform of Disco-interacting protein 2 homolog B isoform X4 OS=Cricetulus griseus OX=10029 GN=Dip2b PE=3 SV=1 CANONICAL=A0A9J7F6K9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 74, "start_aa": "Thr", "end_pos": 74, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr74", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNZ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNZ7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769449", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769449", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1RT27-1", "protein_name": "Osteoclastosis associated transmembrane protein 1", "gene_name": "OSTM1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDGTVARQRSSLLLPRLLLVALLWSGLALGTFSLGSSPHQVLHDLLSEQQLLEVEDLSLALLQGGRLGPLSLPPDLPDLDPECRELLLDFAHSSSELTGCLVRSARPVRLCQTCYLLFQQVANKMDNITRAVGNSSESHGCARSLLMADRMQIVVILSEFFNSTWQKANCANCLTNKSEELSNSTVYFLNLFNDTLTCFENNLQGSTHSVLQLRNYSEVCEKCREKYKTLSSLYSEMQKMNELENKAESGTHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSVFILFLPVVFYLSSFLHSEQKKRKLILPKRLKSSTSFANIQENSN", "length": 335 }, "evidence": [ { "id": "A0A9J7FE64", "url": "https://omabrowser.org/oma/group/A0A9J7FE64/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q86WC4-1", "protein_name": "Osteopetrosis-associated transmembrane protein 1", "gene_name": "OSTM1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPGPTAAQRRCSLPPWLPLGLLLWSGLALGALPFGSSPHRVFHDLLSEQQLLEVEDLSLSLLQGGGLGPLSLPPDLPDLDPECRELLLDFANSSAELTGCLVRSARPVRLCQTCYPLFQQVVSKMDNISRAAGNTSESQSCARSLLMADRMQIVVILSEFFNTTWQEANCANCLTNNSEELSNSTVYFLNLFNHTLTCFEHNLQGNAHSLLQTKNYSEVCKNCREAYKTLSSLYSEMQKMNELENKAEPGTHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSVFILFLPVVFYLSSFLHSEQKKRKLILPKRLKSSTSFANIQENSN", "length": 334 }, "evidence": [ { "id": "A0A9J7FE64", "url": "https://omabrowser.org/oma/group/A0A9J7FE64/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BGT0-1", "protein_name": "Osteopetrosis-associated transmembrane protein 1", "gene_name": "Ostm1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARDAELARSSGWPWRWLPALLLLQLLRWRCALCALPFTSSRHPGFADLLSEQQLLEVQDLTLSLLQGGGLGPLSLLPPDLPDLEPECRELLMDFANSSAELTACMVRSARPVRLCQTCYPLFQQVAIKMDNISRNIGNTSEGPRCGGSLLTADRMQIVLMVSEFFNSTWQEANCANCLTNNGEDLSNNTEDFLSLFNKTLACFEHNLQGHTYSLLPPKNYSEVCRNCKEAYKNLSLLYSQMQKLNGLENKAEPETHLCIDVEDAMNITRKLWSRTFNCSVTCSDTVSVVAVSVFILFLPVVFYLSSFLHSEQKKRKLILPKRLKSSTSFANIQENAT", "length": 338 }, "evidence": [ { "id": "A0A9J7FE64", "url": "https://omabrowser.org/oma/group/A0A9J7FE64/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "osteoclast differentiation", "id": "GO:0030316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030316", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE64" } ], "pmid": "" }, { "name": "transepithelial chloride transport", "id": "GO:0030321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030321", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE64" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE64" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 154, "end_pos": 156 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 203, "end_pos": 205 }, { "start_pos": 213, "end_pos": 215 }, { "start_pos": 235, "end_pos": 237 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 282, "end_pos": 284 }, { "start_pos": 293, "end_pos": 295 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F812-1", "uniprot_ac": "A0A9J7F812", "uniprot_id": "A0A9J7F812_CRIGR", "mass": { "chemical_mass": 95073.0, "monoisotopic_mass": 95073.0 }, "refseq": { "ac": "XP_027252857", "name": "disintegrin and metalloproteinase domain-containing protein 23 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252857" }, "gene_names": [ { "name": "Adam23", "type": "recommended", "evidence": [ { "id": "A0A9J7F812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812" } ] }, { "name": "Adam23", "type": "synonym", "evidence": [ { "id": "XP_027252857", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252857" } ] } ], "protein_names": [ { "name": "Disintegrin and metalloproteinase domain-containing protein 23 isoform X6", "type": "synonym", "evidence": [ { "id": "A0A9J7F812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812/entry#names_and_taxonomy" } ] }, { "name": "disintegrin and metalloproteinase domain-containing protein 23 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027252857", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252857" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252857", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252857" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F812", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Adam23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812", "locus": {} } ], "crossref": [ { "id": "A0A9J7F812", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F812", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756536", "url": "https://www.ncbi.nlm.nih.gov/gene/100756536", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006586", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006586", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756536", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756536", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F812", "url": "https://www.orthodb.org/?gene=A0A9J7F812", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00200", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00200", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07974", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07974", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252857", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252857", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MSM7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MSM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7A0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F812", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F812-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FC87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FC87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPPGSSSRRLSLAGYSLAGTSRGPCRCPAGPVLARTLARAPPCRLLLVLLLVPALAASSRPRARGAAAPSAPHWNETAEKNLGTLADEDNTLQQNSSSNINHSSAMQKEITLPSRLVYYINQDSESPYHVLDTKARHQQKHNKAVHLAQASFQIEAFGSKFILDLILNNGLLSSDYVEIHYENGKPMYSKGGEHCYYHGSIRGVKDSRVALSTCNGLHGMFEDNTFMYMIEPLELIHDEKLTGRPHIIQKTLAGQYSKQMKNLSTDGSDQWPLLPELQWLRRRKRAVNPSRGVFEEMKYLELMIVNDHKMYKKHRSSHAHTNNFAKSVVNLVDSIYKEQLNTRVVLVAVETWTEKDQIDITINPVQMLYEFSKYRQRIKQHADAVHLISRVTFHYKRSSLSYFGGVCSRIRGVGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRKPKCECIESWGGCIMEETGVSHSRKFSKCSISEYRDFLQRGGGACLFNRPTKLFEPTECGNGYVEAGEECDCGFHVECYGVCCKKCSLSNGAHCSDGPCCNNTSCLFQSRGYECRDAVNSCDITEYCTGDSGQCPPNLHKQDGYACNQNQGRCYNGECKTRDNQCQYIWGTKAAGSDKFCYEKLNTEGTEKGNCGKDGDRWIQCSKHDVFCGFLLCTNLTRAPRIGQLQGEIIPTSFYHQGRVIDCSGAHVVLDDDTDVGYVEDGTPCGPSMMCLDRKCLQIQALNMSSCPLDSKGKVCSGHGVCSNEATCICDFTWAGTDCSIRDPVRNPNPPKDEGPKVEKMLEFQGYFFQHVKAFHRSDGAWPLNVPLCTDNYLVVYSNLCSFLSAHKYTLDSIAKELNVHFL", "length": 852, "header": "tr|A0A9J7F812-1|A0A9J7F812_CRIGR Isoform 1 of Disintegrin and metalloproteinase domain-containing protein 23 isoform X6 OS=Cricetulus griseus OX=10029 GN=Adam23 PE=4 SV=1 CANONICAL=A0A9J7F812-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MSM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSM7/entry", "sequence": { "sequence": "MKPPGSSSRRLSLAGYSLAGTSRGPCRCPAGPVLARTLARAPPCRLLLVLLLVPALAASSRPRARGAAAPSAPHWNETAEKNLGTLADEDNTLQQNSSSNINHSSAMQKEITLPSRLVYYINQDSESPYHVLDTKARHQQKHNKAVHLAQASFQIEAFGSKFILDLILNNGLLSSDYVEIHYENGKPMYSKGGEHCYYHGSIRGVKDSRVALSTCNGLHGMFEDNTFMYMIEPLELIHDEKLTGRPHIIQKTLAGQYSKQMKNLSTDGSDQWPLLPELQWLRRRKRAVNPSRGVFEEMKYLELMIVNDHKMYKKHRSSHAHTNNFAKSVVNLVDSIYKEQLNTRVVLVAVETWTEKDQIDITINPVQMLYEFSKYRQRIKQHADAVHLISRVTFHYKRSSLSYFGGVCSRIRGVGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRKPKCECIESWGGCIMEETGVSHSRKFSKCSISEYRDFLQRGGGACLFNRPTKLFEPTECGNGYVEAGEECDCGFHVECYGVCCKKCSLSNGAHCSDGPCCNNTSCLFQSRGYECRDAVNSCDITEYCTGDSGQCPPNLHKQDGYACNQNQGRCYNGECKTRDNQCQYIWGTKAAGSDKFCYEKLNTEGTEKGNCGKDGDRWIQCSKHDVFCGFLLCTNLTRAPRIGQLQGEIIPTSFYHQGRVIDCSGAHVVLDDDTDVGYVEDGTPCGPSMMCLDRKCLQIQALNMSSCPLDSKGKVCSGHGVCSNEATCICDFTWAGTDCSIRDPVRNPNPPKDEGPKGPSATNLIIGSIAGAILVAAIVLGGTGWGFKNVKKRRFDPTQQGPI", "length": 832, "header": "tr|A0A8C2MSM7-1|A0A8C2MSM7_CRIGR Computationally mapped isoform of Disintegrin and metalloproteinase domain-containing protein 23 isoform X7 OS=Cricetulus griseus OX=10029 GN=Adam23 PE=4 SV=1 CANONICAL=A0A9J7F812-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7A0/entry", "sequence": { "sequence": "MKPPGSSSRRLSLAGYSLAGTSRGPCRCPAGPVLARTLARAPPCRLLLVLLLVPALAASSRPRARGAAAPSAPHWNETAEKNLGTLADEDNTLQQNSSSNINHSSAMQKEITLPSRLVYYINQDSESPYHVLDTKARHQQKHNKAVHLAQASFQIEAFGSKFILDLILNNGLLSSDYVEIHYENGKPMYSKGGEHCYYHGSIRGVKDSRVALSTCNGLHGMFEDNTFMYMIEPLELIHDEKLTGRPHIIQKTLAGQYSKQMKNLSTDGSDQWPLLPELQWLRRRKRAVNPSRGVFEEMKYLELMIVNDHKMYKKHRSSHAHTNNFAKSVVNLVDSIYKEQLNTRVVLVAVETWTEKDQIDITINPVQMLYEFSKYRQRIKQHADAVHLISRVTFHYKRSSLSYFGGVCSRIRGVGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRKPKCECIESWGGCIMEETGVSHSRKFSKCSISEYRDFLQRGGGACLFNRPTKLFEPTECGNGYVEAGEECDCGFHVECYGVCCKKCSLSNGAHCSDGPCCNNTSCLFQSRGYECRDAVNSCDITEYCTGDSGQCPPNLHKQDGYACNQNQGRCYNGECKTRDNQCQYIWGTKAAGSDKFCYEKLNTEGTEKGNCGKDGDRWIQCSKHDVFCGFLLCTNLTRAPRIGQLQGEIIPTSFYHQGRVIDCSGAHVVLDDDTDVGYVEDGTPCGPSMMCLDRKCLQIQALNMSSCPLDSKGKVCSGHGVCSNEATCICDFTWAGTDCSIRDPVRNPNPPKDEGPKETSRRGGSIQHSKAPSESAALQACHLVLLGSGYDMFQPCCQNS", "length": 829, "header": "tr|A0A9J7F7A0-1|A0A9J7F812_CRIGR Computationally mapped isoform of Disintegrin and metalloproteinase domain-containing protein 23 isoform X6 OS=Cricetulus griseus OX=10029 GN=Adam23 PE=4 SV=1 CANONICAL=A0A9J7F812-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F812-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812/entry", "sequence": { "sequence": "MKPPGSSSRRLSLAGYSLAGTSRGPCRCPAGPVLARTLARAPPCRLLLVLLLVPALAASSRPRARGAAAPSAPHWNETAEKNLGTLADEDNTLQQNSSSNINHSSAMQKEITLPSRLVYYINQDSESPYHVLDTKARHQQKHNKAVHLAQASFQIEAFGSKFILDLILNNGLLSSDYVEIHYENGKPMYSKGGEHCYYHGSIRGVKDSRVALSTCNGLHGMFEDNTFMYMIEPLELIHDEKLTGRPHIIQKTLAGQYSKQMKNLSTDGSDQWPLLPELQWLRRRKRAVNPSRGVFEEMKYLELMIVNDHKMYKKHRSSHAHTNNFAKSVVNLVDSIYKEQLNTRVVLVAVETWTEKDQIDITINPVQMLYEFSKYRQRIKQHADAVHLISRVTFHYKRSSLSYFGGVCSRIRGVGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRKPKCECIESWGGCIMEETGVSHSRKFSKCSISEYRDFLQRGGGACLFNRPTKLFEPTECGNGYVEAGEECDCGFHVECYGVCCKKCSLSNGAHCSDGPCCNNTSCLFQSRGYECRDAVNSCDITEYCTGDSGQCPPNLHKQDGYACNQNQGRCYNGECKTRDNQCQYIWGTKAAGSDKFCYEKLNTEGTEKGNCGKDGDRWIQCSKHDVFCGFLLCTNLTRAPRIGQLQGEIIPTSFYHQGRVIDCSGAHVVLDDDTDVGYVEDGTPCGPSMMCLDRKCLQIQALNMSSCPLDSKGKVCSGHGVCSNEATCICDFTWAGTDCSIRDPVRNPNPPKDEGPKVEKMLEFQGYFFQHVKAFHRSDGAWPLNVPLCTDNYLVVYSNLCSFLSAHKYTLDSIAKELNVHFL", "length": 852, "header": "tr|A0A9J7F812-1|A0A9J7F812_CRIGR Isoform 1 of Disintegrin and metalloproteinase domain-containing protein 23 isoform X6 OS=Cricetulus griseus OX=10029 GN=Adam23 PE=4 SV=1 CANONICAL=A0A9J7F812-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FC87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC87/entry", "sequence": { "sequence": "MKPPGSSSRRLSLAGYSLAGTSRGPCRCPAGPVLARTLARAPPCRLLLVLLLVPALAASSRPRARGAAAPSAPHWNETAEKNLGTLADEDNTLQQNSSSNINHSSAMQKEITLPSRLVYYINQDSESPYHVLDTKARHQQKHNKAVHLAQASFQIEAFGSKFILDLILNNGLLSSDYVEIHYENGKPMYSKGGEHCYYHGSIRGVKDSRVALSTCNGLHGMFEDNTFMYMIEPLELIHDEKLTGRPHIIQKTLAGQYSKQMKNLSTDGSDQWPLLPELQWLRRRKRAVNPSRGVFEEMKYLELMIVNDHKMYKKHRSSHAHTNNFAKSVVNLVDSIYKEQLNTRVVLVAVETWTEKDQIDITINPVQMLYEFSKYRQRIKQHADAVHLISRVTFHYKRSSLSYFGGVCSRIRGVGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRKPKCECIESWGGCIMEETGVSHSRKFSKCSISEYRDFLQRGGGACLFNRPTKLFEPTECGNGYVEAGEECDCGFHVECYGVCCKKCSLSNGAHCSDGPCCNNTSCLFQSRGYECRDAVNSCDITEYCTGDSGQCPPNLHKQDGYACNQNQGRCYNGECKTRDNQCQYIWGTKAAGSDKFCYEKLNTEGTEKGNCGKDGDRWIQCSKHDVFCGFLLCTNLTRAPRIGQLQGEIIPTSFYHQGRVIDCSGAHVVLDDDTDVGYVEDGTPCGPSMMCLDRKCLQIQALNMSSCPLDSKGKVCSGHGVCSNEATCICDFTWAGTDCSIRDPVRNPNPPKDEGPKVNMATSRLIGAVAGTILALGVIFGGTGWGIE", "length": 817, "header": "tr|A0A9J7FC87-1|A0A9J7FC87_CRIGR Computationally mapped isoform of Disintegrin and metalloproteinase domain-containing protein 23 isoform X9 OS=Cricetulus griseus OX=10029 GN=Adam23 PE=4 SV=1 CANONICAL=A0A9J7F812-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDY8/entry", "sequence": { "sequence": "MKPPGSSSRRLSLAGYSLAGTSRGPCRCPAGPVLARTLARAPPCRLLLVLLLVPALAASSRPRARGAAAPSAPHWNETAEKNLGTLADEDNTLQQNSSSNINHSSAMQKEITLPSRLVYYINQDSESPYHVLDTKARHQQKHNKAVHLAQASFQIEAFGSKFILDLILNNGLLSSDYVEIHYENGKPMYSKGGEHCYYHGSIRGVKDSRVALSTCNGLHGMFEDNTFMYMIEPLELIHDEKLTGRPHIIQKTLAGQYSKQMKNLSTDGSDQWPLLPELQWLRRRKRAVNPSRGVFEEMKYLELMIVNDHKMYKKHRSSHAHTNNFAKSVVNLVDSIYKEQLNTRVVLVAVETWTEKDQIDITINPVQMLYEFSKYRQRIKQHADAVHLISRVTFHYKRSSLSYFGGVCSRIRGVGVNEYGLPMAVAQVLSQSLAQNLGIQWEPSSRKPKCECIESWGGCIMEETGVSHSRKFSKCSISEYRDFLQRGGGACLFNRPTKLFEPTECGNGYVEAGEECDCGFHVECYGVCCKKCSLSNGAHCSDGPCCNNTSCLFQSRGYECRDAVNSCDITEYCTGDSGQCPPNLHKQDGYACNQNQGRCYNGECKTRDNQCQYIWGTKAAGSDKFCYEKLNTEGTEKGNCGKDGDRWIQCSKHDVFCGFLLCTNLTRAPRIGQLQGEIIPTSFYHQGRVIDCSGAHVVLDDDTDVGYVEDGTPCGPSMMCLDRKCLQIQALNMSSCPLDSKGKVCSGHGVCSNEATCICDFTWAGTDCSIRDPVRNPNPPKDEGPKEDLAQCPILHGSSGSRGSSTLL", "length": 808, "header": "tr|A0A9J7JDY8-1|A0A9J7JDY8_CRIGR Computationally mapped isoform of Disintegrin and metalloproteinase domain-containing protein 23 isoform X10 OS=Cricetulus griseus OX=10029 GN=Adam23 PE=4 SV=1 CANONICAL=A0A9J7F812-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7A0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7A0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756536", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756536", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F812", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F812", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "presynaptic membrane", "id": "GO:0042734", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042734", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F812", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F812", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F812" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 547, "end_pos": 549, "annotation": 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], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 263, "end_pos": 265 }, { "start_pos": 547, "end_pos": 549 }, { "start_pos": 548, "end_pos": 550 }, { "start_pos": 664, "end_pos": 666 }, { "start_pos": 732, "end_pos": 734 }, { "start_pos": 76, "end_pos": 78 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F9H4-1", "uniprot_ac": "A0A9J7F9H4", "uniprot_id": "A0A9J7F9H4_CRIGR", "mass": { "chemical_mass": 489927.0, "monoisotopic_mass": 489927.0 }, "refseq": { "ac": "XP_027253955", "name": "vacuolar protein sorting-associated protein 13D isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253955" }, "gene_names": [ { "name": "Vps13d", "type": "recommended", "evidence": [ { "id": "A0A9J7F9H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4" } ] }, { "name": "Vps13d", "type": "synonym", "evidence": [ { "id": "XP_027253955", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253955" } ] } ], "protein_names": [ { "name": "Vacuolar protein sorting-associated protein 13D isoform X6", "type": "synonym", "evidence": [ { "id": "A0A9J7F9H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4/entry#names_and_taxonomy" } ] }, { "name": "vacuolar protein sorting-associated protein 13D isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027253955", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253955" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253955", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253955" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Vps13d", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4", "locus": {} } ], "crossref": [ { "id": "cd14306", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14306", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23453", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23453", "database": "CDD", 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"https://www.ebi.ac.uk/interpro/entry/IPR041969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755898", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755898", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F9H4", "url": "https://www.orthodb.org/?gene=A0A9J7F9H4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16166:SF141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16166:SF141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253955", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253955", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVSNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISGLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEDRWKSERQQKGEPYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPSHPFAFGVCIKNVSMQNAANEPVQKLMRKKRLDVAEFSVYWDVDCTLLGDLPHVELQEAMARSMESRSHHYILEPVCASALLKRNCCKEPLRSRHSPRIECDIQLETIPLKLSQLQYRQIMGFLKELERKERQVKFRKWKPKVAVSKNCREWWYFALNANLYEIREQRKCWTWDFLLHRARDAVFYTERYFNKLKGGMLSADEKEEMCRIEEEQSFEELKILRELVHDRFYKQEELAESLREPQFDSPGASPGDPDASGGSGMLQYLQSWFPGWGGWYGQQSPEGKVVEGLSAESHEHWTPEEILGTEEFFDPTVDASCMNTYTKRDHVFAKLNVQLQRGTVTLLHKEQGAAHASESAFMQLEFSDVKLLAESLPRRNSSLLLVRLGGLFLRDLATEGTMFPLLVFPNPQKEVGRVSQSFGLQTSSADRSDQYPAADPDNPVFEMLYERNPVHSQFERRLHVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFTFKNPVLVVVDLGRMLLTNTQEDSRRKSGDGSASEENQFSDDEYKTPLATPPSTPPPETTSSNGEKTPPFSGVEFSEEQLQAHLMSTQMYERYSLTFMDLQVMVGRVRDNWKRVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHVNEDKISALKNCFALLTTPEMKPPDTQIREKIFPQEGPRGSLQDSVMNLTQSIVMLEQHTREVLVESQLLLAEFKVNCMQLGVESSGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVPGPNVAFLTDMAALNNQTATSVSLEKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDMSPQPLMTDLERNFQEQGTMQSTYEQNTEVAVEIHRLNLLLLRTVGMADGERQGRKIATASIGGTKVNVSMGSSFDMSGSLGCLQLMDLTQENVKNQYVVSIGNSVGYENIVSDIGYFESVFVRMEDAALTEALGFTFAEKSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPKKTREPFVLEESEIYGFGLPSPRSDTVKLILNINIESPVVSIPRRPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGRDSAGPEVTRTFCPPSGSASATSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTASIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFAASAASSPCPNSPLPPLSSCGEPSVERKENGLFSHSSFSSTSQKSLSVKEAKAFTQIQANFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKSLMVSRGAPKPSSLPQKEYLSQSCPSVSSVEYPDMPRSLPSHMEEAPNVFQLYQRPISTSRKKQKEVQDKSYPMTPPPSPTVDEPKVLAGKNKFDDSLVHINIFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKVPPEGPLQNVKSESSASMESELQEPVNSKLDLKVHSLSLVLSKATSELAKANVSKLVAHVEMIEGDLALQGSIGSLSLSDLTPHGDFYRERFTTSGEEALIFQTFKYGQPDPLLQREHDIRVSLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAALEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFLQDKESVPSASPTSTPKHSVKRTTSTEEPKGPHGQGLFMMPPAGVGLGSLKSEFVPSASIKQRGQQAMPPVSQSSSSPGDHVCLLDCIVVDLQDMDIFAAERRPRDGSQASGSSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEIRHTVADISVHGSLSSVHCSLDLCKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGKEGPGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYSGQKPSPGMTNVFNCIFQPSKSSCATQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDLKKQNATPARHRNASSESAVIPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPRFADRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSDDFPPILEIQLQALDIRLSYNDVQLFLAIAKSIPEQASAAAPDTATLEADSVSTCLPGASRIGEDVREGSKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASSGRDNPGAMSAPRISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQHIRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINLTSVLIDQYVSTKESWLADYCKEDKGTESAKSEEWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYAREVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGAFLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHHLHIHQLQVRVNGWEPVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKVPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALPTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIACRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDGAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPSGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQNNRQLYYENFIYIAAAYTFSGLQEGKGRPVASHKAVTCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGSGMLAHEGSAVPHNPNKPSATRSIEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDSSVELLGPVPPEQQFVNQKMRPGSGMLSIRVIPDGPTRALQIADFCQRKNERSLYDTEELPVTEQELRKLRNPDTQQELEVLVRLEGGIGVSLINKVPEELVFASLTGINVHYTQLAASHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPTRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENMDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAANSSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDS", "length": 4386, "header": "tr|A0A9J7F9H4-1|A0A9J7F9H4_CRIGR Isoform 1 of Vacuolar protein sorting-associated protein 13D isoform X6 OS=Cricetulus griseus OX=10029 GN=Vps13d PE=3 SV=1 CANONICAL=A0A9J7F9H4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8Q7/entry", "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVSNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISGLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEDRWKSERQQKGEPYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPSHPFAFGVCIKNVSMQNAANEPVQKLMRKKRLDVAEFSVYWDVDCTLLGDLPHVELQEAMARSMESRSHHYILEPVCASALLKRNCCKEPLRSRHSPRIECDIQLETIPLKLSQLQYRQIMGFLKELERKERQVKFRKWKPKVAVSKNCREWWYFALNANLYEIREQRKCWTWDFLLHRARDAVFYTERYFNKLKGGMLSADEKEEMCRIEEEQSFEELKILRELVHDRFYKQEELAESLREPQFDSPGASPGDPDASGGSGMLQYLQSWFPGWGGWYGQQSPEGKVVEGLSAESHEHWTPEEILGTEEFFDPTVDASCMNTYTKRDHVFAKLNVQLQRGTVTLLHKEQGAAHASESAFMQLEFSDVKLLAESLPRRNSSLLLVRLGGLFLRDLATEGTMFPLLVFPNPQKEVGRVSQSFGLQTSSADRSDQYPAADPDNPVFEMLYERNPVHSQFERRLHVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFTFKNPVLVVVDLGRMLLTNTQDSRRKSGDGSASEENQFSDDEYKTPLATPPSTPPPETTSSNGEKTPPFSGVEFSEEQLQAHLMSTQMYERYSLTFMDLQVMVGRVRDNWKRVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHVNEDKISALKNCFALLTTPEMKPPDTQIREKIFPQEGPRGSLQDSVMNLTQSIVMLEQHTREVLVESQLLLAEFKVNCMQLGVESSGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVPGPNVAFLTDMAALNNQTATSVSLEKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDMSPQPLMTDLERNFQEQGTMQSTYEQNTEVAVEIHRLNLLLLRTVGMADGERQGRKIATASIGGTKVNVSMGSSFDMSGSLGCLQLMDLTQENVKNQYVVSIGNSVGYENIVSDIGYFESVFVRMEDAALTEALGFTFAEKSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPKKTREPFVLEESEIYGFGLPSPRSDTVKLILNINIESPVVSIPRRPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGRDSAGPEVTRTFCPPSGSASATSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTASIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFAASAASSPCPNSPLPPLSSCGEPSVERKENGLFSHSSFSSTSQKSLSVKEAKAFTQIQANFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKSLMVSRGAPKPSSLPQKEYLSQSCPSVSSVEYPDMPRSLPSHMEEAPNVFQLYQRPISTSRKKQKEVQDKSYPMTPPPSPTVDEPKVLAGKNKFDDSLVHINIFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKVPPEGPLQNVKSESSASMESELQEPVNSKLDLKVHSLSLVLSKATSELAKANVSKLVAHVEMIEGDLALQGSIGSLSLSDLTPHGDFYRERFTTSGEEALIFQTFKYGQPDPLLQREHDIRVSLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAALEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFLQDKESVPSASPTSTPKHSVKRTTSTEEPKGPHGQGLFMMPPAGVGLGSLKSEFVPSASIKQRGQQAMPPVSQSSSSPGDHVCLLDCIVVDLQDMDIFAAERRPRDGSQASGSSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEIRHTVADISVHGSLSSVHCSLDLCKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGKEGPGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYSGQKPSPGMTNVFNCIFQPSKSSCATQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDLKKQNATPARHRNASSESAVIPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPRFADRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSDDFPPILEIQLQALDIRLSYNDVQLFLAIAKSIPEQASAAAPDTATLEADSVSTCLPGASRIGEDVREGSKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASSGRDNPGAMSAPRISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQHIRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINLTSVLIDQYVSTKESWLADYCKEDKGTESAKSEEWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYAREVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGAFLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHHLHIHQLQVRVNGWEPVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKVPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALPTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIACRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDGAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPSGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQNNRQLYYENFIYIAAAYTFSGLQEGKGRPVASHKAVTCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGSGMLAHEGSAVPHNPNKPSATRSIEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDSSVELLGPVPPEQQFVNQKMRPGSGMLSIRVIPDGPTRALQIADFCQRKNERSLYDTEELPVTEQELRKLRNPDTQQELEVLVRLEGGIGVSLINKVPEELVFASLTGINVHYTQLAASHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPTRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENMDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAANSSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDS", "length": 4385, "header": "tr|A0A9J7F8Q7-1|A0A9J7F8Q7_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13D isoform X7 OS=Cricetulus griseus OX=10029 GN=Vps13d PE=3 SV=1 CANONICAL=A0A9J7F9H4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4/entry", "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVSNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISGLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEDRWKSERQQKGEPYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPSHPFAFGVCIKNVSMQNAANEPVQKLMRKKRLDVAEFSVYWDVDCTLLGDLPHVELQEAMARSMESRSHHYILEPVCASALLKRNCCKEPLRSRHSPRIECDIQLETIPLKLSQLQYRQIMGFLKELERKERQVKFRKWKPKVAVSKNCREWWYFALNANLYEIREQRKCWTWDFLLHRARDAVFYTERYFNKLKGGMLSADEKEEMCRIEEEQSFEELKILRELVHDRFYKQEELAESLREPQFDSPGASPGDPDASGGSGMLQYLQSWFPGWGGWYGQQSPEGKVVEGLSAESHEHWTPEEILGTEEFFDPTVDASCMNTYTKRDHVFAKLNVQLQRGTVTLLHKEQGAAHASESAFMQLEFSDVKLLAESLPRRNSSLLLVRLGGLFLRDLATEGTMFPLLVFPNPQKEVGRVSQSFGLQTSSADRSDQYPAADPDNPVFEMLYERNPVHSQFERRLHVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFTFKNPVLVVVDLGRMLLTNTQEDSRRKSGDGSASEENQFSDDEYKTPLATPPSTPPPETTSSNGEKTPPFSGVEFSEEQLQAHLMSTQMYERYSLTFMDLQVMVGRVRDNWKRVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHVNEDKISALKNCFALLTTPEMKPPDTQIREKIFPQEGPRGSLQDSVMNLTQSIVMLEQHTREVLVESQLLLAEFKVNCMQLGVESSGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVPGPNVAFLTDMAALNNQTATSVSLEKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDMSPQPLMTDLERNFQEQGTMQSTYEQNTEVAVEIHRLNLLLLRTVGMADGERQGRKIATASIGGTKVNVSMGSSFDMSGSLGCLQLMDLTQENVKNQYVVSIGNSVGYENIVSDIGYFESVFVRMEDAALTEALGFTFAEKSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPKKTREPFVLEESEIYGFGLPSPRSDTVKLILNINIESPVVSIPRRPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGRDSAGPEVTRTFCPPSGSASATSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTASIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFAASAASSPCPNSPLPPLSSCGEPSVERKENGLFSHSSFSSTSQKSLSVKEAKAFTQIQANFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKSLMVSRGAPKPSSLPQKEYLSQSCPSVSSVEYPDMPRSLPSHMEEAPNVFQLYQRPISTSRKKQKEVQDKSYPMTPPPSPTVDEPKVLAGKNKFDDSLVHINIFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKVPPEGPLQNVKSESSASMESELQEPVNSKLDLKVHSLSLVLSKATSELAKANVSKLVAHVEMIEGDLALQGSIGSLSLSDLTPHGDFYRERFTTSGEEALIFQTFKYGQPDPLLQREHDIRVSLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAALEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFLQDKESVPSASPTSTPKHSVKRTTSTEEPKGPHGQGLFMMPPAGVGLGSLKSEFVPSASIKQRGQQAMPPVSQSSSSPGDHVCLLDCIVVDLQDMDIFAAERRPRDGSQASGSSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEIRHTVADISVHGSLSSVHCSLDLCKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGKEGPGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYSGQKPSPGMTNVFNCIFQPSKSSCATQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDLKKQNATPARHRNASSESAVIPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPRFADRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSDDFPPILEIQLQALDIRLSYNDVQLFLAIAKSIPEQASAAAPDTATLEADSVSTCLPGASRIGEDVREGSKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASSGRDNPGAMSAPRISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQHIRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINLTSVLIDQYVSTKESWLADYCKEDKGTESAKSEEWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYAREVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGAFLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHHLHIHQLQVRVNGWEPVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKVPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALPTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIACRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDGAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPSGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQNNRQLYYENFIYIAAAYTFSGLQEGKGRPVASHKAVTCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGSGMLAHEGSAVPHNPNKPSATRSIEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDSSVELLGPVPPEQQFVNQKMRPGSGMLSIRVIPDGPTRALQIADFCQRKNERSLYDTEELPVTEQELRKLRNPDTQQELEVLVRLEGGIGVSLINKVPEELVFASLTGINVHYTQLAASHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPTRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENMDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAANSSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDS", "length": 4386, "header": "tr|A0A9J7F9H4-1|A0A9J7F9H4_CRIGR Isoform 1 of Vacuolar protein sorting-associated protein 13D isoform X6 OS=Cricetulus griseus OX=10029 GN=Vps13d PE=3 SV=1 CANONICAL=A0A9J7F9H4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP1/entry", "sequence": { "sequence": "MQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFTFKNPVLVVVDLGRMLLTNTQEDSRRKSGDGSASEENQFSDDEYKTPLATPPSTPPPETTSSNGEKTPPFSGVEFSEEQLQAHLMSTQMYERYSLTFMDLQVMVGRVRDNWKRVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHVNEDKISALKNCFALLTTPEMKPPDTQIREKIFPQEGPRGSLQDSVMNLTQSIVMLEQHTREVLVESQLLLAEFKVNCMQLGVESSGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVPGPNVAFLTDMAALNNQTATSVSLEKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDMSPQPLMTDLERNFQEQGTMQSTYEQNTEVAVEIHRLNLLLLRTVGMADGERQGRKIATASIGGTKVNVSMGSSFDMSGSLGCLQLMDLTQENVKNQYVVSIGNSVGYENIVSDIGYFESVFVRMEDAALTEALGFTFAEKSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPKKTREPFVLEESEIYGFGLPSPRSDTVKLILNINIESPVVSIPRRPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGRDSAGPEVTRTFCPPSGSASATSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTASIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFAASAASSPCPNSPLPPLSSCGEPSVERKENGLFSHSSFSSTSQKSLSVKEAKAFTQIQANFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKSLMVSRGAPKPSSLPQKEYLSQSCPSVSSVEYPDMPRSLPSHMEEAPNVFQLYQRPISTSRKKQKEVQDKSYPMTPPPSPTVDEPKVLAGKNKFDDSLVHINIFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKVPPEGPLQNVKSESSASMESELQEPVNSKLDLKVHSLSLVLSKATSELAKANVSKLVAHVEMIEGDLALQGSIGSLSLSDLTPHGDFYRERFTTSGEEALIFQTFKYGQPDPLLQREHDIRVSLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAALEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFLQDKESVPSASPTSTPKHSVKRTTSTEEPKGPHGQGLFMMPPAGVGLGSLKSEFVPSASIKQRGQQAMPPVSQSSSSPGDHVCLLDCIVVDLQDMDIFAAERRPRDGSQASGSSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEIRHTVADISVHGSLSSVHCSLDLCKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGKEGPGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYSGQKPSPGMTNVFNCIFQPSKSSCATQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDLKKQNATPARHRNASSESAVIPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPRFADRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSDDFPPILEIQLQALDIRLSYNDVQLFLAIAKSIPEQASAAAPDTATLEADSVSTCLPGASRIGEDVREGSKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASSGRDNPGAMSAPRISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQHIRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINLTSVLIDQYVSTKESWLADYCKEDKGTESAKSEEWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYAREVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGAFLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHHLHIHQLQVRVNGWEPVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKVPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALPTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIACRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDGAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPSGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQNNRQLYYENFIYIAAAYTFSGLQEGKGRPVASHKAVTCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGSGMLAHEGSAVPHNPNKPSATRSIEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDSSVELLGPVPPEQQFVNQKMRPGSGMLSIRVIPDGPTRALQIADFCQRKNERSLYDTEELPVTEQELRKLRNPDTQQELEVLVRLEGGIGVSLINKVPEELVFASLTGINVHYTQLAASHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPTRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENMDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAANSSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDS", "length": 3705, "header": "tr|A0A9J7FCP1-1|A0A9J7F9H4_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13D isoform X6 OS=Cricetulus griseus OX=10029 GN=Vps13d PE=3 SV=1 CANONICAL=A0A9J7F9H4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCX3/entry", "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVSNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISGLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEDRWKSERQQKGEPYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPSHPFAFGVCIKNVSMQNAANEPVQKLMRKKRLDVAEFSVYWDVDCTLLGDLPHVELQEAMARSMESRSHHYILEPVCASALLKRNCCKEPLRSRHSPRIECDIQLETIPLKLSQLQYRQIMGFLKELERKERQVKFRKWKPKVAVSKNCREWWYFALNANLYEIREQRKCWTWDFLLHRARDAVFYTERYFNKLKGGMLSADEKEEMCRIEEEQSFEELKILRELVHDRFYKQEELAESLREPQFDSPGASPGDPDASGGSGMLQYLQSWFPGWGGWYGQQSPEGKVVEGLSAESHEHWTPEEILGTEEFFDPTVDASCMNTYTKRDHVFAKLNVQLQRGTVTLLHKEQGAAHASESAFMQLEFSDVKLLAESLPRRNSSLLLVRLGGLFLRDLATEGTMFPLLVFPNPQKEVGRVSQSFGLQTSSADRSDQYPAADPDNPVFEMLYERNPVHSQFERRLHVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFTFKNPVLVVVDLGRMLLTNTQEDSRRKSGDGSASEENQFSDDEYKTPLATPPSTPPPETTSSNGEKTPPFSGVEFSEEQLQAHLMSTQMYERYSLTFMDLQVMVGRVRDNWKRVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHVNEDKISALKNCFALLTTPEMKPPDTQIREKIFPQEGPRGSLQDSVMNLTQSIVMLEQHTREVLVESQLLLAEFKVNCMQLGVESSGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVPGPNVAFLTDMAALNNQTATSVSLEKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDMSPQPLMTDLERNFQEQGTMQSTYEQNTEVAVEIHRLNLLLLRTVGMADGERQGRKIATASIGGTKVNVSMGSSFDMSGSLGCLQLMDLTQENVKNQYVVSIGNSVGYENIVSDIGYFESVFVRMEDAALTEALGFTFAEKSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPKKTREPFVLEESEIYGFGLPSPRSDTVKLILNINIESPVVSIPRRPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGRDSAGPEVTRTFCPPSGSASATSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTASIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFAASAASSPCPNSPLPPLSSCGEPSVERKENGLFSHSSFSSTSQKSLSVKEAKAFTQIQANFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKSLMVSRGAPKPSSLPQKEYLSQSCPSVSSVEYPDMPRSLPSHMEEAPNVFQLYQRPISTSRKKQKEVQDKSYPMTPPPSPTVDEPKVLAGKNKFDDSLVHINIFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKVPPEGPLQNVKSESSASMESELQEPVNSKLDLKVHSLSLVLSKATSELAKANVSKLVAHVEMIEGDLALQGSIGSLSLSDLTPHGDFYRERFTTSGEEALIFQTFKYGQPDPLLQREHDIRVSLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAALEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFLQDKESVPSASPTSTPKHSVKRTTSTEEPKGPHGQGLFMMPPAGVGLGSLKSEFVPSASIKQRGQQAMPPVSQSSSSPGDHVCLLDCIVVDLQDMDIFAAERRPRDGSQASGSSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEIRHTVADISVHGSLSSVHCSLDLCKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGKEGPGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYSGQKPSPGMTNVFNCIFQPSKSSCATQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDLKKQNATPARHRNASSESAVIPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPRFADRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSDDFPPILEIQLQALDIRLSYNDVQLFLAIAKSIPEQASAAAPDTATLEADSVSTCLPGASRIGEDVREGSKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASSGRDNPGAMSAPRISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQHIRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINLTSVLIDQYVSTKESWLADYCKEDKGTESAKSEEWMGSSVDPPCFGQKVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGAFLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHHLHIHQLQVRVNGWEPVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKVPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALPTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIACRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDGAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPSGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQNNRQLYYENFIYIAAAYTFSGLQEGKGRPVASHKAVTCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGSGMLAHEGSAVPHNPNKPSATRSIEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDSSVELLGPVPPEQQFVNQKMRPGSGMLSIRVIPDGPTRALQIADFCQRKNERSLYDTEELPVTEQELRKLRNPDTQQELEVLVRLEGGIGVSLINKVPEELVFASLTGINVHYTQLAASHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPTRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENMDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAANSSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDS", "length": 4361, "header": "tr|A0A9J7FCX3-1|A0A9J7FCX3_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13D isoform X10 OS=Cricetulus griseus OX=10029 GN=Vps13d PE=3 SV=1 CANONICAL=A0A9J7F9H4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDP6/entry", "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVSNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISGLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEDRWKSERQQKGEPYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPSHPFAFGVCIKNVSMQNAANEPVQKLMRKKRLDVAEFSVYWDVDCTLLGDLPHVELQEAMARSMESRSHHYILEPVCASALLKRNCCKEPLRSRHSPRIECDIQLETIPLKLSQLQYRQIMGFLKELERKERQVKFRKWKPKVAVSKNCREWWYFALNANLYEIREQRKCWTWDFLLHRARDAVFYTERYFNKLKGGMLSADEKEEMCRIEEEQSFEELKILRELVHDRFYKQEELAESLREPQFDSPGASPGDPDASGGSGMLQYLQSWFPGWGGWYGQQSPEGKVVEGLSAESHEHWTPEEILGTEEFFDPTVDASCMNTYTKRDHVFAKLNVQLQRGTVTLLHKEQGAAHASESAFMQLEFSDVKLLAESLPRRNSSLLLVRLGGLFLRDLATEGTMFPLLVFPNPKEVGRVSQSFGLQTSSADRSDQYPAADPDNPVFEMLYERNPVHSQFERRLHVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFTFKNPVLVVVDLGRMLLTNTQEDSRRKSGDGSASEENQFSDDEYKTPLATPPSTPPPETTSSNGEKTPPFSGVEFSEEQLQAHLMSTQMYERYSLTFMDLQVMVGRVRDNWKRVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHVNEDKISALKNCFALLTTPEMKPPDTQIREKIFPQEGPRGSLQDSVMNLTQSIVMLEQHTREVLVESQLLLAEFKVNCMQLGVESSGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVPGPNVAFLTDMAALNNQTATSVSLEKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDMSPQPLMTDLERNFQEQGTMQSTYEQNTEVAVEIHRLNLLLLRTVGMADGERQGRKIATASIGGTKVNVSMGSSFDMSGSLGCLQLMDLTQENVKNQYVVSIGNSVGYENIVSDIGYFESVFVRMEDAALTEALGFTFAEKSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPKKTREPFVLEESEIYGFGLPSPRSDTVKLILNINIESPVVSIPRRPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGRDSAGPEVTRTFCPPSGSASATSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTASIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFAASAASSPCPNSPLPPLSSCGEPSVERKENGLFSHSSFSSTSQKSLSVKEAKAFTQIQANFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKSLMVSRGAPKPSSLPQKEYLSQSCPSVSSVEYPDMPRSLPSHMEEAPNVFQLYQRPISTSRKKQKEVQDKSYPMTPPPSPTVDEPKVLAGKNKFDDSLVHINIFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKVPPEGPLQNVKSESSASMESELQEPVNSKLDLKVHSLSLVLSKATSELAKANVSKLVAHVEMIEGDLALQGSIGSLSLSDLTPHGDFYRERFTTSGEEALIFQTFKYGQPDPLLQREHDIRVSLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAALEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFLQDKESVPSASPTSTPKHSVKRTTSTEEPKGPHGQGLFMMPPAGVGLGSLKSEFVPSASIKQRGQQAMPPVSQSSSSPGDHVCLLDCIVVDLQDMDIFAAERRPRDGSQASGSSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEIRHTVADISVHGSLSSVHCSLDLCKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGKEGPGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYSGQKPSPGMTNVFNCIFQPSKSSCATQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDLKKQNATPARHRNASSESAVIPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPRFADRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSDDFPPILEIQLQALDIRLSYNDVQLFLAIAKSIPEQASAAAPDTATLEADSVSTCLPGASRIGEDVREGSKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASSGRDNPGAMSAPRISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQHIRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINLTSVLIDQYVSTKESWLADYCKEDKGTESAKSEEWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYAREVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGAFLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHHLHIHQLQVRVNGWEPVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKVPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALPTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIACRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDGAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPSGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQNNRQLYYENFIYIAAAYTFSGLQEGKGRPVASHKAVTCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGSGMLAHEGSAVPHNPNKPSATRSIEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDSSVELLGPVPPEQQFVNQKMRPGSGMLSIRVIPDGPTRALQIADFCQRKNERSLYDTEELPVTEQELRKLRNPDTQQELEVLVRLEGGIGVSLINKVPEELVFASLTGINVHYTQLAASHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPTRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENMDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAANSSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDS", "length": 4385, "header": "tr|A0A9J7FDP6-1|A0A9J7FDP6_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13D isoform X8 OS=Cricetulus griseus OX=10029 GN=Vps13d PE=3 SV=1 CANONICAL=A0A9J7F9H4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP4/entry", "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVSNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISGLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEDRWKSERQQKGEPYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPSHPFAFGVCIKNVSMQNAANEPVQKLMRKKRLDVAEFSVYWDVDCTLLGDLPHVELQEAMARSMESRSHHYILEPVCASALLKRNCCKEPLRSRHSPRIECDIQLETIPLKLSQLQYRQIMGFLKELERKERQVKFRKWKPKVAVSKNCREWWYFALNANLYEIREQRKCWTWDFLLHRARDAVFYTERYFNKLKGGMLSADEKEEMCRIEEEQSFEELKILRELVHDRFYKQEELAESLREPQFDSPGASPGDPDASGGSGMLQYLQSWFPGWGGWYGQQSPEGKVVEGLSAESHEHWTPEEILGTEEFFDPTVDASCMNTYTKRDHVFAKLNVQLQRGTVTLLHKEQGAAHASESAFMQLEFSDVKLLAESLPRRNSSLLLVRLGGLFLRDLATEGTMFPLLVFPNPQKEVGRVSQSFGLQTSSADRSDQYPAADPDNPVFEMLYERNPVHSQFERRLHVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFTFKNPVLVVVDLGRMLLTNTQEDSRRKSGDGSASEENQFSDDEYKTPLATPPSTPPPETTSSNGEKTPPFSGVEFSEEQLQAHLMSTQMYERYSLTFMDLQVMVGRVRDNWKRVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHVNEDKISALKNCFALLTTPEMKPPDTQIREKIFPQEGPRGSLQDSVMNLTQSIVMLEQHTREVLVESQLLLAEFKVNCMQLGVESSGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVPGPNVAFLTDMAALNNQTATSVSLEKILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDMSPQPLMTDLERNFQEQGTMQSTYEQNTEVAVEIHRLNLLLLRTVGMADGERQGRKIATASIGGTKVNVSMGSSFDMSGSLGCLQLMDLTQENVKNQYVVSIGNSVGYENIVSDIGYFESVFVRMEDAALTEALGFTFAEKSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPKKTREPFVLEESEIYGFGLPSPRSDTVKLILNINIESPVVSIPRRPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGRDSAGPEVTRTFCPPSGSASATSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTASIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFAASAASSPCPNSPLPPLSSCGEPSVERKENGLFSHSSFSSTSQKSLSVKEAKAFTQIQANFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKSLMVSRGAPKPSSLPQKEYLSQSCPSVSSVEYPDMPRSLPSHMEEAPNVFQLYQRPISTSRKKQKEVQDKSYPMTPPPSPTVDEPKVLAGKNKFDDSLVHINIFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKVPPEGPLQNVKSESSASMESELQEPVNSKLDLKVHSLSLVLSKATSELAKANVSKLVAHVEMIEGDLALQGSIGSLSLSDLTPHGDFYRERFTTSGEEALIFQTFKYGQPDPLLQREHDIRVSLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAALEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAGFPGTFLQDKESVPSASPTSTPKHSVKRTTSTEEPKGPHGQGLFMMPPAGVGLGSLKSEFVPSASIKQRGQQAMPPVSQSSSSPGDHVCLLDCIVVDLQDMDIFAAERRPRDGSQASGSSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEIRHTVADISVHGSLSSVHCSLDLCKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGKEGPGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYSGQKPSPGMTNVFNCIFQPSKSSCATQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDLKKQNATPARHRNASSESAVIPKTVKSGVVTKRSSLPVSNERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPRFADRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSDDFPPILEIQLQALDIRLSYNDVQLFLAIAKSIPEQASAAAPDTATLEADSVSTCLPGASRIGEDVREGSKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASSGRDNPGAMSAPRISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQHIRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINLTSVLIDQYVSTKESWLADYCKEDKGTESAKSEEWMGSSVDPPCFGQTEVKTPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGVVPEGNGAFLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHHLHIHQLQVRVNGWEPVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKVPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALPTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIACRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDGAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPSGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQNNRQLYYENFIYIAAAYTFSGLQEGKGRPVASHKAVTCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGSGMLAHEGSAVPHNPNKPSATRSIEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDSSVELLGPVPPEQQFVNQKMRPGSGMLSIRVIPDGPTRALQIADFCQRKNERSLYDTEELPVTEQELRKLRNPDTQQELEVLVRLEGGIGVSLINKVPEELVFASLTGINVHYTQLAASHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLMVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPTRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENMDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAANSSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDS", "length": 4362, "header": "tr|A0A9J7JEP4-1|A0A9J7JEP4_CRIGR Computationally mapped isoform of Vacuolar protein sorting-associated protein 13D isoform X9 OS=Cricetulus griseus OX=10029 GN=Vps13d PE=3 SV=1 CANONICAL=A0A9J7F9H4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1761, "start_aa": "Thr", "end_pos": 1761, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1761", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1767, "start_aa": "Thr", "end_pos": 1767, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1767", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3783, "start_aa": "Thr", "end_pos": 3783, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3783", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCP1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755898", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755898", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein retention in Golgi apparatus", "id": "GO:0045053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045053", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4" } ], "pmid": "" }, { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4" } ], "pmid": "" }, { "name": "mitochondrion organization", "id": "GO:0007005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4" } ], "pmid": "" }, { "name": "protein targeting to vacuole", "id": "GO:0006623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006623", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1025, "end_pos": 1027, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1060, "end_pos": 1062, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1204, "end_pos": 1206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1294, "end_pos": 1296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1435, "end_pos": 1437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1489, "end_pos": 1491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1490, "end_pos": 1492, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1807, "end_pos": 1809, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1897, "end_pos": 1899, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2292, "end_pos": 2294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2326, "end_pos": 2328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2423, "end_pos": 2425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2431, "end_pos": 2433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2467, "end_pos": 2469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2543, "end_pos": 2545, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2548, "end_pos": 2550, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2801, "end_pos": 2803, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2891, "end_pos": 2893, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2933, "end_pos": 2935, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2999, "end_pos": 3001, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3201, "end_pos": 3203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3260, "end_pos": 3262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3285, "end_pos": 3287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3404, "end_pos": 3406, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3472, "end_pos": 3474, "annotation": 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modulator 3", "type": "recommended", "evidence": [ { "id": "A0A9J7FGK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6/entry#names_and_taxonomy" } ] }, { "name": "RUN and TBC1 domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "A0A9J7FGK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6/entry#names_and_taxonomy" } ] }, { "name": "small G protein signaling modulator 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027259856", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259856" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259856", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259856" } ] }, { "annotation": "GTPase-activating protein (GAP) specific for Rab5 small GTPase for which it accelerates the intrinsic GTP hydrolysis rate, thereby controlling trafficking through the early endocytic pathway. 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"MMSGNHMPSASGPFSALTPSIWPQEILAKYTQKEESVDQPEFCYDEFGFRVDKEEGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG", "length": 752, "header": "tr|A0A9J7FGK6-1|A0A9J7FGK6_CRIGR Isoform 1 of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FGK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6/entry", "sequence": { "sequence": "MMSGNHMPSASGPFSALTPSIWPQEILAKYTQKEESVDQPEFCYDEFGFRVDKEEGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG", "length": 752, "header": "tr|A0A9J7FGK6-1|A0A9J7FGK6_CRIGR Isoform 1 of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGV9/entry", "sequence": { "sequence": "MAPGDPGKVHTGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG", "length": 708, "header": "tr|A0A9J7FGV9-1|A0A9J7FGK6_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FI06-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI06/entry", "sequence": { "sequence": "MAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG", "length": 689, "header": "tr|A0A9J7FI06-1|A0A9J7FI06_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FIA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIA5/entry", "sequence": { "sequence": "MMSGNHMPSASGPFSALTPSIWPQEILAKYTQKEESVDQPEFCYDEFGFRVDKEEGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRWRPLLLCLQPLPGLGAPC", "length": 724, "header": "tr|A0A9J7FIA5-1|A0A9J7FIA5_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FK85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK85/entry", "sequence": { "sequence": "MMSGNHMPSASGPFSALTPSIWPQEILAKYTQKEESVDQPEFCYDEFGFRVDKEEGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKSSSAALPSASPRTGSSLLRERKRSSH", "length": 728, "header": "tr|A0A9J7FK85-1|A0A9J7FGK6_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKI0/entry", "sequence": { "sequence": "MMSGNHMPSASGPFSALTPSIWPQEILAKYTQKEESVDQPEFCYDEFGFRVDKEEGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELPAKREGGPCQ", "length": 731, "header": "tr|A0A9J7FKI0-1|A0A9J7FKI0_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLA2/entry", "sequence": { "sequence": "MMSGNHMPSASGPFSALTPSIWPQEILAKYTQKEESVDQPEFCYDEFGFRVDKEGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG", "length": 751, "header": "tr|A0A9J7FLA2-1|A0A9J7FLA2_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEZ9/entry", "sequence": { "sequence": "MMSGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG", "length": 700, "header": "tr|A0A9J7JEZ9-1|A0A9J7JEZ9_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JII4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JII4/entry", "sequence": { "sequence": "MMSGNHMPSASGPFSALTPSIWPQEILAKYTQKEESVDQPEFCYDEFGFRVDKEEGSEPGCSQMAGAPMVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMEDAELLLGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTSATTNLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKSSSAALPSASPRTGSSLLRERVVPASDWGCCVHRKRSSH", "length": 741, "header": "tr|A0A9J7JII4-1|A0A9J7JII4_CRIGR Computationally mapped isoform of Small G protein signaling modulator 3 OS=Cricetulus griseus OX=10029 GN=Sgsm3 PE=3 SV=1 CANONICAL=A0A9J7FGK6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGV9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGV9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770172", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770172", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FGK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6" }, { "id": "PS50826", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RUN", "eco_id": "ECO_0000259", "start_pos": 557, "end_pos": 720, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FGK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 307, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FGK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGK6" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 482, "end_pos": 541, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 455, "end_pos": 457 }, { "start_pos": 642, "end_pos": 644 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256473", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256473" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bin1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66", "locus": {} } ], "crossref": [ { "id": "A0A9J7FE66", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FE66", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07611", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07611", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12139", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12139", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772852", "url": "https://www.ncbi.nlm.nih.gov/gene/100772852", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772852", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772852", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FE66", "url": "https://www.orthodb.org/?gene=A0A9J7FE66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46514", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46514", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46514:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46514:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03114", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03114", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256473", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256473", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LVM3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LVM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LXK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LXK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FE66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FE66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JES7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JES7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JES7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JES7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVASPVKAPTPSGQPIPWDLWESTESQAGILPSGEPSSAEGTFAVAWPSQTAEPGPAQPAEASEVVGGAQEPGETAASEAASSSLPAVVVETFSATVNGAVDGSSGTGRLDMPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ", "length": 557, "header": "tr|A0A9J7FE66-1|A0A9J7FE66_CRIGR Isoform 1 of Myc box-dependent-interacting protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Bin1 PE=4 SV=1 CANONICAL=A0A9J7FE66-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LVM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVM3/entry", "sequence": { "sequence": "MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQSSLPAVVVETFSATVNGAVDGSSGTGRLDMPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ", "length": 453, "header": "tr|A0A8C2LVM3-1|A0A9J7FE66_CRIGR Computationally mapped isoform of Myc box-dependent-interacting protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Bin1 PE=4 SV=1 CANONICAL=A0A9J7FE66-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LXK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXK1/entry", "sequence": { "sequence": "MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQPAEASEVVGGAQEPGETAASEAASSSLPAVVVETFSATVNGAVDGSSGTGRLDMPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ", "length": 477, "header": "tr|A0A8C2LXK1-1|A0A9J7FE66_CRIGR Computationally mapped isoform of Myc box-dependent-interacting protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Bin1 PE=4 SV=1 CANONICAL=A0A9J7FE66-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FE66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66/entry", "sequence": { "sequence": "MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVASPVKAPTPSGQPIPWDLWESTESQAGILPSGEPSSAEGTFAVAWPSQTAEPGPAQPAEASEVVGGAQEPGETAASEAASSSLPAVVVETFSATVNGAVDGSSGTGRLDMPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ", "length": 557, "header": "tr|A0A9J7FE66-1|A0A9J7FE66_CRIGR Isoform 1 of Myc box-dependent-interacting protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Bin1 PE=4 SV=1 CANONICAL=A0A9J7FE66-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JES7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JES7/entry", "sequence": { "sequence": "MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQSSLPAVVVETFSATVNGAVDGSSGTGRLDMPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ", "length": 410, "header": "tr|A0A9J7JES7-1|A0A9J7JES7_CRIGR Computationally mapped isoform of Myc box-dependent-interacting protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Bin1 PE=4 SV=1 CANONICAL=A0A9J7FE66-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF08/entry", "sequence": { "sequence": "MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQPAEASEVVGGAQEPGETAASEAASSSLPAVVVETFSATVNGAVDGSSGTGRLDMPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ", "length": 434, "header": "tr|A0A9J7JF08-1|A0A9J7JF08_CRIGR Computationally mapped isoform of Myc box-dependent-interacting protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Bin1 PE=4 SV=1 CANONICAL=A0A9J7FE66-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 277, "start_aa": "Thr", "end_pos": 277, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr277", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 379, "start_aa": "Thr", "end_pos": 379, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr379", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LVM3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVM3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LVM3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVM3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772852", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772852", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" } ], "pmid": "" }, { "name": "tau protein binding", "id": "GO:0048156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048156", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" } ], "pmid": "" }, { "name": "synaptic vesicle", "id": "GO:0008021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008021", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of endocytosis", "id": "GO:0030100", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030100", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FE66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" }, { "id": "PS51021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAR", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 245, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FE66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE66" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 484, "end_pos": 557, "start_aa": "Gly", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 277, 379 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 263, "end_pos": 265 }, { "start_pos": 551, "end_pos": 553 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FEH5-1", "uniprot_ac": "A0A9J7FEH5", "uniprot_id": "A0A9J7FEH5_CRIGR", "mass": { "chemical_mass": 174329.0, "monoisotopic_mass": 174329.0 }, "refseq": { "ac": "XP_027255344", "name": "AT-hook DNA-binding motif-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255344" }, "gene_names": [ { "name": "Ahdc1", "type": "recommended", "evidence": [ { "id": "A0A9J7FEH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5" } ] }, { "name": "Ahdc1", "type": "synonym", "evidence": [ { "id": "XP_027255344", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255344" } ] } ], "protein_names": [ { "name": "AT-hook DNA-binding motif-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027255344", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255344" }, { "id": "A0A9J7FEH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255344", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255344" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ahdc1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5", "locus": {} } ], "crossref": [ { "id": "100758977", "url": "https://www.ncbi.nlm.nih.gov/gene/100758977", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758977", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758977", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FEH5", "url": "https://www.orthodb.org/?gene=A0A9J7FEH5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15617", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15617", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15617:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15617:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15735", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15735", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255344", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255344", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LZL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LZL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWYGHLVLLLGLSLQDSDAIYPLGPYRLSKCSGPGFSHPHVSPGPARWPSEDKVRMRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHTFSENPRPPPRRDPSTRRPPVLAKGDDLLPPRAARPVSQAHCPTPAPDSNSLHHWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSPEERVTPHAKSERPSHPLYEPEPEPRDSPQPGQGHGPGATATATGLPPEPEPDGPDYSELADADILNELASLTCPEAQLLEAQALEPPSPQPEPQLLDPQPRFLDSQALEPLGEGLELPPLQPLADPLGLPSLTLQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQSLGHCQLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADSGPEGRLLPLPMPTGLAAALTEPPPLPPPPPPPALSGPGPVSELEAESSQTPVVPTRKGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSTEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATLAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISQFLHRVQGFRRRGGKTGGFGGRGGGHAAKAARCSFSDFFEGIGKKKKVVPVAATGVVGPGLTELGHPRKRGRGEIDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYAGAPSGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPSSGLPAQRGLTTFPNRGAKASPVAVGSGGAGADPSFQPVLPSRQTFPPGRATSYGITPATSDCRAAETFPKLAPPPSAVARSPTTHPPANTYPPQYGGYGAGQSVFAPAKPFSGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPAGGPCLPPSKASFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASAASSSSSSFQPSPENCRQFVGASQWPFRQGYGGLDWASEAFSQLYNPNFDCHVSEPNVILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSSLEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFSTSASATASGYPSKRSTGPRQPRGGRGSGACSAKKERGGTAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQSRAFGVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLTACEPLKHGLQGASLSHAAAAQAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAVCLSAPHLASPPATPKADKEPLEMARPPGPPRGPAAATAGYGCPLLSDLTLSPVPRDSLLPLQDTAYRYPGFIPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL", "length": 1652, "header": "tr|A0A9J7FEH5-1|A0A9J7FEH5_CRIGR Isoform 1 of AT-hook DNA-binding motif-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ahdc1 PE=4 SV=1 CANONICAL=A0A9J7FEH5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LZL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZL0/entry", "sequence": { "sequence": "MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHTFSENPRPPPRRDPSTRRPPVLAKGDDLLPPRAARPVSQAHCPTPAPDSNSLHHWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSPEERVTPHAKSERPSHPLYEPEPEPRDSPQPGQGHGPGATATATGLPPEPEPDGPDYSELADADILNELASLTCPEAQLLEAQALEPPSPQPEPQLLDPQPRFLDSQALEPLGEGLELPPLQPLADPLGLPSLTLQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQSLGHCQLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADSGPEGRLLPLPMPTGLAAALTEPPPLPPPPPPPALSGPGPVSELEAESSQTPVVPTRKGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSTEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATLAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISQFLHRVQGFRRRGGKTGGFGGRGGGHAAKAARCSFSDFFEGIGKKKKVVPVAATGVVGPGLTELGHPRKRGRGEIDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYAGAPSGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPSSGLPAQRGLTTFPNRGAKASPVAVGSGGAGADPSFQPVLPSRQTFPPGRATSYGITPATSDCRAAETFPKLAPPPSAVARSPTTHPPANTYPPQYGGYGAGQSVFAPAKPFSGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPAGGPCLPPSKASFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASAASSSSSSFQPSPENCRQFVGASQWPFRQGYGGLDWASEAFSQLYNPNFDCHVSEPNVILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSSLEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFSTSASATASGYPSKRSTGPRQPRGGRGSGACSAKKERGGTAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQSRAFGVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLTACEPLKHGLQGASLSHAAAAQAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAVCLSAPHLASPPATPKADKEPLEMARPPGPPRGPAAATAGYGCPLLSDLTLSPVPRDSLLPLQDTAYRYPGFIPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL", "length": 1597, "header": "tr|A0A8C2LZL0-1|A0A9J7FEH5_CRIGR Computationally mapped isoform of AT-hook DNA-binding motif-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ahdc1 PE=4 SV=1 CANONICAL=A0A9J7FEH5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FEH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5/entry", "sequence": { "sequence": "MWYGHLVLLLGLSLQDSDAIYPLGPYRLSKCSGPGFSHPHVSPGPARWPSEDKVRMRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHTFSENPRPPPRRDPSTRRPPVLAKGDDLLPPRAARPVSQAHCPTPAPDSNSLHHWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSPEERVTPHAKSERPSHPLYEPEPEPRDSPQPGQGHGPGATATATGLPPEPEPDGPDYSELADADILNELASLTCPEAQLLEAQALEPPSPQPEPQLLDPQPRFLDSQALEPLGEGLELPPLQPLADPLGLPSLTLQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQSLGHCQLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADSGPEGRLLPLPMPTGLAAALTEPPPLPPPPPPPALSGPGPVSELEAESSQTPVVPTRKGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSTEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATLAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISQFLHRVQGFRRRGGKTGGFGGRGGGHAAKAARCSFSDFFEGIGKKKKVVPVAATGVVGPGLTELGHPRKRGRGEIDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYAGAPSGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASRPESRKASGTYAGPPSSGLPAQRGLTTFPNRGAKASPVAVGSGGAGADPSFQPVLPSRQTFPPGRATSYGITPATSDCRAAETFPKLAPPPSAVARSPTTHPPANTYPPQYGGYGAGQSVFAPAKPFSGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPAGGPCLPPSKASFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASAASSSSSSFQPSPENCRQFVGASQWPFRQGYGGLDWASEAFSQLYNPNFDCHVSEPNVILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGGFRRANSEASSSEGQSSLSSLEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFSTSASATASGYPSKRSTGPRQPRGGRGSGACSAKKERGGTAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQSRAFGVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLTACEPLKHGLQGASLSHAAAAQAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAVCLSAPHLASPPATPKADKEPLEMARPPGPPRGPAAATAGYGCPLLSDLTLSPVPRDSLLPLQDTAYRYPGFIPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL", "length": 1652, "header": "tr|A0A9J7FEH5-1|A0A9J7FEH5_CRIGR Isoform 1 of AT-hook DNA-binding motif-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ahdc1 PE=4 SV=1 CANONICAL=A0A9J7FEH5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 89, "start_aa": "Thr", "end_pos": 89, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr89", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZL0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZL0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZL0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758977", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758977", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5" } ], "pmid": "" }, { "name": "promoter-enhancer loop anchoring activity", "id": "GO:0140585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140585", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEH5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mesoderm formation", "id": "GO:0001707", 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F6E3-1", "uniprot_ac": "A0A9J7F6E3", "uniprot_id": "A0A9J7F6E3_CRIGR", "mass": { "chemical_mass": 62911.0, "monoisotopic_mass": 62911.0 }, "refseq": { "ac": "XP_027250521", "name": "single-stranded DNA-binding protein 4 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250521" }, "gene_names": [ { "name": "Ssbp4", "type": "recommended", "evidence": [ { "id": "A0A9J7F6E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E3" } ] }, { "name": "Ssbp4", "type": "synonym", "evidence": [ { "id": "XP_027250521", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250521" } ] } ], "protein_names": [ { "name": "Single-stranded DNA-binding protein 4 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7F6E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E3/entry#names_and_taxonomy" } ] }, { "name": "single-stranded DNA-binding protein 4 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027250521", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250521" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027250521.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250521", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250521" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ssbp4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E3", "locus": {} } ], "crossref": [ { "id": "A0A9J7F6E3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F6E3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768609", "url": "https://www.ncbi.nlm.nih.gov/gene/100768609", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768609", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768609", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F6E3", "url": "https://www.orthodb.org/?gene=A0A9J7F6E3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12610", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12610", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12610:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12610:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04503", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04503", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250521", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250521", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MB00", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MB00-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F860", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F860", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F860-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F860-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F995", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F995", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F995-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F995-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H935", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H935", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H935-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H935-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9L0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9T5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9T5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCT1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KES9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KES9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KES9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KES9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KET0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KET0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KET0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KET0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTRALTGPRVMHVRVHAGRGKHALGPESTPVSLSPEHSRDQAGLEPRGPPVSASNEDRKTNMCLDGLSWSHAGLHKALGSIYPGKWCTPVISAPGRPRQDHKLKGILPCSVSSRSALTTLSPQRKRWASSQRAAARGLAEHRGRMHFEARRPLYVSSPSRSRDSHSPGSLAPQLRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNIYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 599, "header": "tr|A0A9J7F6E3-1|A0A9J7F6E3_CRIGR Isoform 1 of Single-stranded DNA-binding protein 4 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MB00-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB00/entry", "sequence": { "sequence": "MYGKAGKGCAPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESYSPGMTMSV", "length": 362, "header": "tr|A0A8C2MB00-1|A0A9J7F6E3_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6E3/entry", "sequence": { "sequence": "MTTRALTGPRVMHVRVHAGRGKHALGPESTPVSLSPEHSRDQAGLEPRGPPVSASNEDRKTNMCLDGLSWSHAGLHKALGSIYPGKWCTPVISAPGRPRQDHKLKGILPCSVSSRSALTTLSPQRKRWASSQRAAARGLAEHRGRMHFEARRPLYVSSPSRSRDSHSPGSLAPQLRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNIYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 599, "header": "tr|A0A9J7F6E3-1|A0A9J7F6E3_CRIGR Isoform 1 of Single-stranded DNA-binding protein 4 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F860-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F860/entry", "sequence": { "sequence": "MCLDGLSWSHAGLHKALGSIYPGKWCTPVISAPGRPRQDHKLKGILPCSVSSRSALTTLSPQRKRWASSQRAAARGLAEHRGRMHFEARRPLYVSSPSRSRDSHSPGSLAPQLRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 562, "header": "tr|A0A9J7F860-1|A0A9J7F860_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F995-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F995/entry", "sequence": { "sequence": "MCLDGLSWSHAGLHKALGSIYPGKWCTPVISAPGRPRQDHKLKGILPCSVSSRSALTTLSPQRKRWASSQRAAARGLAEHRGRMHFEARRPLYVSSPSRSRDSHSPGSLAPQLRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESYSPGMTMSV", "length": 457, "header": "tr|A0A9J7F995-1|A0A9J7F995_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H935-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H935/entry", "sequence": { "sequence": "MYGKAGKGCAPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 438, "header": "tr|A0A9J7H935-1|A0A9J7H935_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X10 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9L0/entry", "sequence": { "sequence": "MYGKAGKGCAPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANVSGGRCASPDGDPAGGGRPEPHAALCPQFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 495, "header": "tr|A0A9J7H9L0-1|A0A9J7H9L0_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X8 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9T5/entry", "sequence": { "sequence": "MYGKAGKGCAPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANVSGGRCASPDGDPAGGGRPEPHAALCPQFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 466, "header": "tr|A0A9J7H9T5-1|A0A9J7H9T5_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X9 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCT1/entry", "sequence": { "sequence": "MYGKAGKGCAPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESYSPGMTMSV", "length": 333, "header": "tr|A0A9J7HCT1-1|A0A9J7HCT1_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X12 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P3/entry", "sequence": { "sequence": "MCLDGLSWSHAGLHKALGSIYPGKWCTPVISAPGRPRQDHKLKGILPCSVSSRSALTTLSPQRKRWASSQRAAARGLAEHRGRMHFEARRPLYVSSPSRSRDSHSPGSLAPQLRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANVSGGRCASPDGDPAGGGRPEPHAALCPQFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 561, "header": "tr|A0A9J7K3P3-1|A0A9J7K3P3_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDT2/entry", "sequence": { "sequence": "MCLDGLSWSHAGLHKALGSIYPGKWCTPVISAPGRPRQDHKLKGILPCSVSSRSALTTLSPQRKRWASSQRAAARGLAEHRGRMHFEARRPLYVSSPSRSRDSHSPGSLAPQLRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANVSGGRCASPDGDPAGGGRPEPHAALCPQFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESYSPGMTMSV", "length": 485, "header": "tr|A0A9J7KDT2-1|A0A9J7KDT2_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X6 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KES9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KES9/entry", "sequence": { "sequence": "MYGKAGKGCAPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANVSGGRCASPDGDPAGGGRPEPHAALCPQFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESYSPGMTMSV", "length": 390, "header": "tr|A0A9J7KES9-1|A0A9J7KES9_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X13 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KET0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KET0/entry", "sequence": { "sequence": "MCLDGLSWSHAGLHKALGSIYPGKWCTPVISAPGRPRQDHKLKGILPCSVSSRSALTTLSPQRKRWASSQRAAARGLAEHRGRMHFEARRPLYVSSPSRSRDSHSPGSLAPQLRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHTSEAKVFQDYSTAAPNPVMGAMAPNDAMGAGPVAPGFFQPFMSPRFPGGARPTLRMPGQPPVGLPGSQPLIPSAMDPSPRAQGHPSLGGPMQRVTPPRGMASVGPQGYGAGMRPPPNSLATTQVLPSMNMGPGVRGPWASPSGNSIPYASSSPGSYTGPAGGGGAPGTPIMPSPGDSTNSSENMYTIMNPIGPGAGRANVSGGRCASPDGDPAGGGRPEPHAALCPQFPLGPGPEGPLGSMSAMETHHVNGSLGSGDMDGLPKSSPGAVGGLSNAPGTPRDDGEMAAAGTFLHSFPSESVSACVDSPPAAAAGRRGLAGRPRRGGAGPEQDRDRGGPVLPWHDHERVIALACTQCPAGKVSGRAPATRTPGQPGLDGWQGPHEGLHFSTHTTQHNTQHTHTSEKCGLGGGYCQ", "length": 590, "header": "tr|A0A9J7KET0-1|A0A9J7KET0_CRIGR Computationally mapped isoform of Single-stranded DNA-binding protein 4 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ssbp4 PE=4 SV=1 CANONICAL=A0A9J7F6E3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": 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"date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FGE5-1", "uniprot_ac": "A0A9J7FGE5", "uniprot_id": "A0A9J7FGE5_CRIGR", "mass": { "chemical_mass": 38128.0, "monoisotopic_mass": 38128.0 }, "refseq": { "ac": "XP_027259728", "name": "3-mercaptopyruvate sulfurtransferase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259728" }, "gene_names": [ { "name": "Mpst", "type": "recommended", "evidence": [ { "id": "A0A9J7FGE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE5" } ] }, { "name": "Mpst", "type": "synonym", "evidence": [ { "id": "XP_027259728", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259728" } ] } ], "protein_names": [ { "name": "Sulfurtransferase", "type": "recommended", "evidence": [ { "id": "A0A9J7FGE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE5/entry#names_and_taxonomy" } ] }, { "name": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259728", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259728" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGE5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mpst", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FGE5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FGE5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01448", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01448", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01449", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01449", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763920", "url": "https://www.ncbi.nlm.nih.gov/gene/100763920", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045078", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045078", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763920", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763920", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FGE5", "url": "https://www.orthodb.org/?gene=A0A9J7FGE5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11364:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11364:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00581", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00581", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259728", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259728", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MC39", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MC39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MC39-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MC39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGE5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHVSPAARRMEGAASCVSEWPRQWAVPKTPPFGWPQAHNRSIPEAMAAPKLFRALVSAQWVAEALKSPRASQPLKLLDASWYLPKLGRNARQEFEERHIPGATFFDIDHCSDHRSPYDHMLPSAEHFADYAGSLGVGAATHVVVYDGSDQGLYSAPRVWWMFRAFGHRSVSLLDGGFRHWLSQNLPISSGKSHPKPAEFHAQLDPSFIKTHEDILENLEARRFQVVDARAAGRFRGTEPEPRDGIEPGHIPGSVNIPFTEFLTKEGLEKSPEEIRHLFQEKNVDLSKPLVATCGSGVTACHVALGAFLCGKPDVPVYDGSWVEWYIRAKPENIISEGKGKTQ", "length": 343, "header": "tr|A0A9J7FGE5-1|A0A9J7FGE5_CRIGR Isoform 1 of Sulfurtransferase OS=Cricetulus griseus OX=10029 GN=Mpst PE=4 SV=1 CANONICAL=A0A9J7FGE5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MC39-1", "url": 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"MAHVSPAARRMEGAASCVSEWPRQWAVPKTPPFGWPQAHNRSIPEAMAAPKLFRALVSAQWVAEALKSPRASQPLKLLDASWYLPKLGRNARQEFEERHIPGATFFDIDHCSDHRSPYDHMLPSAEHFADYAGSLGVGAATHVVVYDGSDQGLYSAPRVWWMFRAFGHRSVSLLDGGFRHWLSQNLPISSGKSHPKPAEFHAQLDPSFIKTHEDILENLEARRFQVVDARAAGRFRGTEPEPRDGIEPGHIPGSVNIPFTEFLTKEGLEKSPEEIRHLFQEKNVDLSKPLVATCGSGVTACHVALGAFLCGKPDVPVYDGSWVEWYIRAKPENIISEGKGKTQ", "length": 343, "header": "tr|A0A9J7FGE5-1|A0A9J7FGE5_CRIGR Isoform 1 of Sulfurtransferase OS=Cricetulus griseus OX=10029 GN=Mpst PE=4 SV=1 CANONICAL=A0A9J7FGE5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FGQ8-1", "uniprot_ac": "A0A9J7FGQ8", "uniprot_id": "A0A9J7FGQ8_CRIGR", "mass": { "chemical_mass": 241322.0, "monoisotopic_mass": 241322.0 }, "refseq": { "ac": "XP_027256271", "name": "dedicator of cytokinesis protein 7 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256271" }, "gene_names": [ { "name": "Dock7", "type": "recommended", "evidence": [ { "id": "A0A9J7FGQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8" } ] }, { "name": "Dock7", "type": "synonym", "evidence": [ { "id": "XP_027256271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256271" } ] } ], "protein_names": [ { "name": "Dedicator of cytokinesis protein 7 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FGQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8/entry#names_and_taxonomy" } ] }, { "name": "dedicator of cytokinesis protein 7 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027256271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256271" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256271", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256271" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dock7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8", "locus": {} } ], "crossref": [ { "id": "cd08696", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08696", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11703", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11703", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758142", "url": "https://www.ncbi.nlm.nih.gov/gene/100758142", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027007", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758142", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758142", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FGQ8", "url": "https://www.orthodb.org/?gene=A0A9J7FGQ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23317", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23317", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23317:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23317:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11878", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11878", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256271", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256271", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MG43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MG43-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGNISHHTSVPLTEAVDPVDLEDYLITHPLAVDSGPLRDLVEFPPDDIEVVYSPRDCRTLVSAVPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPRQVFESDEAPDGNSYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDHQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDVPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERTTSGDDACNLTSFRPATLTVANFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNRSPDFHEEVKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKFFALVNALDEHMFPVRIGDMRIMENNLENELKSSISALNSSQLEPVVRFLHLLLDKLILLVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNNLLASYIYYVFRLPNTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDEVRSIIGSKGLDRSNSWVNTGPKAAPWGANPSPSAEPTQAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLDAPRKTRFPERFMDDIAALVSTIAGDVVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRGFVFTLIKSCYKQVSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTNVQDQKIANMFELSLPFRQQHYLAGLVLTELALILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIAPDDYDSESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLQSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCADLCLRLLRHCSSSISTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLSTIHGKLQEAFSKIVHQDGKRMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEISHRLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPFFDTYEMKDRITYFDKNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTPIEVAIEDMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPADPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQLYKAALPITCHRDSFSRMSLRKMEL", "length": 2128, "header": "tr|A0A9J7FGQ8-1|A0A9J7FGQ8_CRIGR Isoform 1 of Dedicator of cytokinesis protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock7 PE=3 SV=1 CANONICAL=A0A9J7FGQ8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MG43-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG43/entry", "sequence": { "sequence": "MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGNISHHTSVPLTEAVDPVDLEDYLITHPLAVDSGPLRDLVEFPPDDIEVVYSPRDCRTLVSAVPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPRQVFESDEAPDGNSYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDHQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDVPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERTTSGDDACNLTSFRPATLTVANFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNRSPDFHEEVKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKFFALVNALDEHMFPVRIGDMRIMENNLENELKSSISALNSSQLEPVVRFLHLLLDKLILLVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNNLLASYIYYVFRLPNTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDEVRSIIGSKAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLDAPRKTRFPERFMDDIAALVSTIAGDVVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRGFVFTLIKSCYKQVSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTNVQDQKIANMFELSLPFRQQHYLAGLVLTELALILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIAPDDYDSESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLQSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCADLCLRLLRHCSSSISTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLSTIHGKLQEAFSKIVHQDGKRMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEISHRLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPFFDTYEMKDRITYFDKNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTPIEVAIEDMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPADPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQLYKAALPITCHRDSFSRMSLRKMEL", "length": 2098, "header": "tr|A0A8C2MG43-1|A0A9J7FGQ8_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock7 PE=3 SV=1 CANONICAL=A0A9J7FGQ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8/entry", "sequence": { "sequence": "MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGNISHHTSVPLTEAVDPVDLEDYLITHPLAVDSGPLRDLVEFPPDDIEVVYSPRDCRTLVSAVPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPRQVFESDEAPDGNSYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDHQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDVPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERTTSGDDACNLTSFRPATLTVANFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNRSPDFHEEVKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKFFALVNALDEHMFPVRIGDMRIMENNLENELKSSISALNSSQLEPVVRFLHLLLDKLILLVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNNLLASYIYYVFRLPNTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDEVRSIIGSKGLDRSNSWVNTGPKAAPWGANPSPSAEPTQAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLDAPRKTRFPERFMDDIAALVSTIAGDVVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRGFVFTLIKSCYKQVSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTNVQDQKIANMFELSLPFRQQHYLAGLVLTELALILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIAPDDYDSESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLQSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCADLCLRLLRHCSSSISTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLSTIHGKLQEAFSKIVHQDGKRMFGTYFRVGFYGTKFGDLDEQEFVYKEPAITKLAEISHRLEGFYGERFGEDVVEVIKDSNPVDKCKLDPNKAYIQITYVEPFFDTYEMKDRITYFDKNYNLRRFMYCTPFTLDGRAHGELHEQFKRKTILTTSHAFPYIKTRVNVTHKEEIILTPIEVAIEDMQKKTQELAFATHQDPADPKMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPADPKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQLYKAALPITCHRDSFSRMSLRKMEL", "length": 2128, "header": "tr|A0A9J7FGQ8-1|A0A9J7FGQ8_CRIGR Isoform 1 of Dedicator of cytokinesis protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock7 PE=3 SV=1 CANONICAL=A0A9J7FGQ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQF6/entry", "sequence": { "sequence": "MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGNISHHTSVPLTEAVDPVDLEDYLITHPLAVDSGPLRDLVEFPPDDIEVVYSPRDCRTLVSAVPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPRQVFESDEAPDGNSYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDHQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDVPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERTTSGDDACNLTSFRPATLTVANFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNRSPDFHEEVKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKFFALVNALDEHMFPVRIGDMRIMENNLENELKSSISALNSSQLEPVVRFLHLLLDKLILLVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNNLLASYIYYVFRLPNTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDEVRSIIGSKGLDRSNSWVNTGPKAAPWGANPSPSAEPTQAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLDAPRKTRFPERFMDDIAALVSTIAGDVVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRGFVFTLIKSCYKQVSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFSTNVQDQKIANMFELSLPFRQQHYLAGLVLTELALILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIAPDDYDSESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFTDLSVLQLNRLLDLLYLCVSCFEYKGKKVFERMNSLTFKKSKDMRAKLEEAILGSIGARQEMVRRSRGQLERSPSGSAFGSQENLRWRKDMTHWRQNTEKLDKSRAEIEHEALIDGNLATEANLIILDTLEIVVQTVSVTESKESILGGVLKVLLQSMACNQSAVYLQHCFATQRALVSKFPELLFEEETEQCADLCLRLLRHCSSSISTIRSHASASLYLLMRQNFEIGNNFARVKMQVTMSLSSLVGTSQNFNEEFLRRSLKTILTYAEEDLELRETTFPDQVQDLVFNLHMILSDTVKMKEHQEDPEMLIDLMYRIAKGYQTSPDLRLTWLQNMAGKHSERSNHAEAAQCLVHSAALVAEYLSMLEDRKYLPVGCVTFQNISSNVLEESAVSDDVVSPDEEGICSGKYFTESGLVGLLEQAAASFSMAGMYEAVNEVYKVLIPIHEANRDAKKLSTIHGKLQEAFSKIVHQSTGWEFLSCEYFPV", 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"length": 2020, "header": "tr|A0A9J7JG74-1|A0A9J7JG74_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 7 isoform X4 OS=Cricetulus griseus OX=10029 GN=Dock7 PE=3 SV=1 CANONICAL=A0A9J7FGQ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUJ9/entry", "sequence": { "sequence": "MAERRAFAQKISRTVAAEVRKQISGQYSGSPQLLKNLNIVGNISHHTSVPLTEAVDPVDLEDYLITHPLAVDSGPLRDLVEFPPDDIEVVYSPRDCRTLVSAVPEESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPRQVFESDEAPDGNSYQDEQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDHQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDVPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAAITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERKGSWSERRNSSLVGRRSLERTTSGDDACNLTSFRPATLTVANFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSNAMPVIFGKSSCSEFSKEAYTAVVYHNRSPDFHEEVKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLETPVGYTWIPMLQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKFFALVNALDEHMFPVRIGDMRIMENNLENELKSSISALNSSQLEPVVRFLHLLLDKLILLVVRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNNLLASYIYYVFRLPNTYPNSPSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDEVRSIIGSKGLDRSNSWVNTGPKAAPWGANPSPSAEPTQAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLDAPRKTRFPERFMDDIAALVSTIAGDVVSRFQKDTEMVERLNTSLAFFLNDLLSVMDRGFVFTLIKSCYKQVSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQDVCCTAINS", "length": 1165, "header": "tr|A0A9J7JUJ9-1|A0A9J7JUJ9_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 7 isoform X6 OS=Cricetulus griseus OX=10029 GN=Dock7 PE=3 SV=1 CANONICAL=A0A9J7FGQ8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG43" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MG43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MG43" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758142", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758142", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "axonogenesis", "id": "GO:0007409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007409", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8" } ], "pmid": "" }, { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1070, "end_pos": 1072, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1508, "end_pos": 1510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1730, "end_pos": 1732, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1969, "end_pos": 1971, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2067, "end_pos": 2069, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": 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"start_pos": 561, "end_pos": 727, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FGQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ8" }, { "id": "PS51651", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51651" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOCKER", "eco_id": "ECO_0000259", "start_pos": 1668, "end_pos": 2102, "start_aa": "Lys", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1070, "end_pos": 1072 }, { "start_pos": 1508, "end_pos": 1510 }, { "start_pos": 1730, "end_pos": 1732 }, { "start_pos": 1969, "end_pos": 1971 }, { "start_pos": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FH15-1", "uniprot_ac": "A0A9J7FH15", "uniprot_id": "A0A9J7FH15_CRIGR", "mass": { "chemical_mass": 150951.0, "monoisotopic_mass": 150951.0 }, "refseq": { "ac": "XP_027259976", "name": "5-oxoprolinase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259976" }, "gene_names": [ { "name": "Oplah", "type": "recommended", "evidence": [ { "id": "A0A9J7FH15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" } ] }, { "name": "Oplah", "type": "synonym", "evidence": [ { "id": "XP_027259976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259976" } ] } ], "protein_names": [ { "name": "5-oxoprolinase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027259976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259976" }, { "id": "A0A9J7FH15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259976", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259976" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Oplah", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15", "locus": {} } ], "crossref": [ { "id": "100752451", "url": "https://www.ncbi.nlm.nih.gov/gene/100752451", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003692", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003692", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752451", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752451", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TDCNVML", "url": "https://omabrowser.org/oma/group/TDCNVML/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MMY0", "url": "https://www.orthodb.org/?gene=A0A8C2MMY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FH15", "url": "https://www.orthodb.org/?gene=A0A9J7FH15", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JBA0", "url": "https://www.orthodb.org/?gene=A0A9J7JBA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11365", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11365", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11365:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11365:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01968", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01968", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02538", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02538", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05378", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05378", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15058", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15058", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19278", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19278", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259976", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259976", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MMY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MMY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH15-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FI50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FI50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQIHCHCGPLTTGQLLCLLLGMSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRSRGSSLGFCSSNFLAEVTANPRLPRRKTIKFKDAERVLPGLPTEEPLLDSSPNIMGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEGGVLLPRDRPLDTSRIASIRMGTTVATNALLERRGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVEERVVLYHGEPGSGSPVKGRTGDLLEIQQPVDLGALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGALARDLGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEINNFLTSGPCSASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFIQLDQRLSHLEEQCVEALRAQGFTRSQISTEGFLHLRYQGTDCALMVSAQQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDTPKAKNGPPRVDKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTETGDIHISVGAEAPSMASTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGYIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPIRLRVQINLSQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRSLVGRDIPLNQGCLAPVRVVIPKGSILDPSPEAAVVGGNVLTSQRVVDVILKAFGACSASQGCMNNVTLGNARMGYYETVAGGTGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRQGSGGRGRFRGGDGIVRELVFREEALLSVLTERRAFQPYGLYGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDIFCLYTPGGGGYGDPEDPAPPPGSPPLFAAFPERGSVYEYRRAQEAV", "length": 1405, "header": "tr|A0A9J7FH15-1|A0A9J7FH15_CRIGR Isoform 1 of 5-oxoprolinase isoform X1 OS=Cricetulus griseus OX=10029 GN=Oplah PE=3 SV=1 CANONICAL=A0A9J7FH15-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MMY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMY0/entry", "sequence": { "sequence": "MGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEGGVLLPRDRPLDTSRIASIRMGTTVATNALLERRGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVEERVVLYHGEPGSGSPVKGRTGDLLEIQQPVDLGALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGALARDLGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEINNFLTSGPCSASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFIQLDQRLSHLEEQCVEALRAQGFTRSQISTEGFLHLRYQGTDCALMVSAQQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDTPKAKNGPPRVDKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTETGDIHISVGAEAPSMASTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGYIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPIRLRVQINLSQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRSLVGRDIPLNQGCLAPVRVVIPKGSILDPSPEAAVVGGNVLTSQRVVDVILKAFGACSASQGCMNNVTLGNARMGYYETVAGGTGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRQGSGGRGRFRGGDGIVRELVFREEALLSVLTERRAFQPYGLYGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDIFCLYTPGGGGYGDPEDPAPPPGSPPLFAAFPERGSVYEYRRAQEAV", "length": 1288, "header": "tr|A0A8C2MMY0-1|A0A9J7FH15_CRIGR Computationally mapped isoform of 5-oxoprolinase isoform X1 OS=Cricetulus griseus OX=10029 GN=Oplah PE=3 SV=1 CANONICAL=A0A9J7FH15-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FH15-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15/entry", "sequence": { "sequence": "MQIHCHCGPLTTGQLLCLLLGMSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRSRGSSLGFCSSNFLAEVTANPRLPRRKTIKFKDAERVLPGLPTEEPLLDSSPNIMGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEGGVLLPRDRPLDTSRIASIRMGTTVATNALLERRGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVEERVVLYHGEPGSGSPVKGRTGDLLEIQQPVDLGALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGALARDLGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEINNFLTSGPCSASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFIQLDQRLSHLEEQCVEALRAQGFTRSQISTEGFLHLRYQGTDCALMVSAQQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDTPKAKNGPPRVDKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTETGDIHISVGAEAPSMASTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGYIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPIRLRVQINLSQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRSLVGRDIPLNQGCLAPVRVVIPKGSILDPSPEAAVVGGNVLTSQRVVDVILKAFGACSASQGCMNNVTLGNARMGYYETVAGGTGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRQGSGGRGRFRGGDGIVRELVFREEALLSVLTERRAFQPYGLYGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDIFCLYTPGGGGYGDPEDPAPPPGSPPLFAAFPERGSVYEYRRAQEAV", "length": 1405, "header": "tr|A0A9J7FH15-1|A0A9J7FH15_CRIGR Isoform 1 of 5-oxoprolinase isoform X1 OS=Cricetulus griseus OX=10029 GN=Oplah PE=3 SV=1 CANONICAL=A0A9J7FH15-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FI50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI50/entry", "sequence": { "sequence": "MQIHCHCGYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRSRGSSLGFCSSNFLAEVTANPRLPRRKTIKFKDAERVLPGLPTEEPLLDSSPNIMGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEGGVLLPRDRPLDTSRIASIRMGTTVATNALLERRGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVEERVVLYHGEPGSGSPVKGRTGDLLEIQQPVDLGALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGALARDLGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEINNFLTSGPCSASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFIQLDQRLSHLEEQCVEALRAQGFTRSQISTEGFLHLRYQGTDCALMVSAQQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDTPKAKNGPPRVDKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTETGDIHISVGAEAPSMASTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGYIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPIRLRVQINLSQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRSLVGRDIPLNQGCLAPVRVVIPKGSILDPSPEAAVVGGNVLTSQRVVDVILKAFGACSASQGCMNNVTLGNARMGYYETVAGGTGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRQGSGGRGRFRGGDGIVRELVFREEALLSVLTERRAFQPYGLYGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDIFCLYTPGGGGYGDPEDPAPPPGSPPLFAAFPERGSVYEYRRAQEAV", "length": 1386, "header": "tr|A0A9J7FI50-1|A0A9J7FI50_CRIGR Computationally mapped isoform of 5-oxoprolinase isoform X3 OS=Cricetulus griseus OX=10029 GN=Oplah PE=3 SV=1 CANONICAL=A0A9J7FH15-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GPK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPK7/entry", "sequence": { "sequence": "MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRSRGSSLGFCSSNFLAEVTANPRLPRRKTIKFKDAERVLPGLPTEEPLLDSSPNIMGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEGGVLLPRDRPLDTSRIASIRMGTTVATNALLERRGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVEERVVLYHGEPGSGSPVKGRTGDLLEIQQPVDLGALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGALARDLGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEINNFLTSGPCSASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFIQLDQRLSHLEEQCVEALRAQGFTRSQISTEGFLHLRYQGTDCALMVSAQQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDTPKAKNGPPRVDKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTETGDIHISVGAEAPSMASTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGYIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPIRLRVQINLSQGCLAPVRVVIPKGSILDPSPEAAVVGGNVLTSQRVVDVILKAFGACSASQGCMNNVTLGNARMGYYETVAGGTGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRQGSGGRGRFRGGDGIVRELVFREEALLSVLTERRAFQPYGLYGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDIFCLYTPGGGGYGDPEDPAPPPGSPPLFAAFPERGSVYEYRRAQEAV", "length": 1339, "header": "tr|A0A9J7GPK7-1|A0A9J7GPK7_CRIGR Computationally mapped isoform of 5-oxoprolinase isoform X5 OS=Cricetulus griseus OX=10029 GN=Oplah PE=3 SV=1 CANONICAL=A0A9J7FH15-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA0/entry", "sequence": { "sequence": "MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRSRGSSLGFCSSNFLAEVTANPRLPRRKTIKFKDAERVLPGLPTEEPLLDSSPNIMGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEGGVLLPRDRPLDTSRIASIRMGTTVATNALLERRGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVEERVVLYHGEPGSGSPVKGRTGDLLEIQQPVDLGALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGALARDLGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEINNFLTSGPCSASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFIQLDQRLSHLEEQCVEALRAQGFTRSQISTEGFLHLRYQGTDCALMVSAQQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDTPKAKNGPPRVDKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTETGDIHISVGAEAPSMASTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGYIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPIRLRVQINLSQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRSLVGRDIPLNQGCLAPVRVVIPKGSILDPSPEAAVVGGNVLTSQRVVDVILKAFGACSASQGCMNNVTLGNARMGYYETVAGGTGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRQGSGGRGRFRGGDGIVRELVFREEALLSVLTERRAFQPYGLYGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDIFCLYTPGGGGYGDPEDPAPPPGSPPLFAAFPERGSVYEYRRAQEAV", "length": 1384, "header": "tr|A0A9J7JBA0-1|A0A9J7JBA0_CRIGR Computationally mapped isoform of 5-oxoprolinase isoform X4 OS=Cricetulus griseus OX=10029 GN=Oplah PE=3 SV=1 CANONICAL=A0A9J7FH15-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF25/entry", "sequence": { "sequence": "MQIHCHCGSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRSRGSSLGFCSSNFLAEVTANPRLPRRKTIKFKDAERVLPGLPTEEPLLDSSPNIMGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEGGVLLPRDRPLDTSRIASIRMGTTVATNALLERRGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVEERVVLYHGEPGSGSPVKGRTGDLLEIQQPVDLGALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGALARDLGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEINNFLTSGPCSASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFIQLDQRLSHLEEQCVEALRAQGFTRSQISTEGFLHLRYQGTDCALMVSAQQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDTPKAKNGPPRVDKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTETGDIHISVGAEAPSMASTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGYIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPIRLRVQINLSQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRSLVGRDIPLNQGCLAPVRVVIPKGSILDPSPEAAVVGGNVLTSQRVVDVILKAFGACSASQGCMNNVTLGNARMGYYETVAGGTGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRQGSGGRGRFRGGDGIVRELVFREEALLSVLTERRAFQPYGLYGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDIFCLYTPGGGGYGDPEDPAPPPGSPPLFAAFPERGSVYEYRRAQEAV", "length": 1387, "header": "tr|A0A9J7JF25-1|A0A9J7JF25_CRIGR Computationally mapped isoform of 5-oxoprolinase isoform X2 OS=Cricetulus griseus OX=10029 GN=Oplah PE=3 SV=1 CANONICAL=A0A9J7FH15-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMY0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MMY0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMY0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752451", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752451", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E7F6Z6-1", "protein_name": "3.5.2.9", "gene_name": "oplah", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAETKGKFDFAIDRGGTFTDVFARLPDGREKVLKLLSHDPQNYKDAPTEGIRRVLEEETGKSFPRDQPVDTSQIGWIRMGTTVATNALLERQGERTALLVTSGFKDLLHIGTQARPNLFDLEVCMPDVLYEEVIEVEERVILRQDSCQLPRNEPKRIVTGSTGESLEVWRELDLQRVEQDLRRVQSKGIRSLAVLLLHSYTWAAHEKAVGSLAKRLGFAQVSLSSEVMPMVRAVPRGYTVCADAYLTPKIHLYLTKFTAGFKGGLKGVDVLFMQSDGGLTPMEQFCGSRAVLSGPAGGVVGYAVTCYKSTEKKPVIGFDMGGTSTDVSRYAGQYEHVFEATIAGITLQAPQLDINTVAAGGGSRLFFRSGMFVVGPESAGAHPGPACYRKGGPLTVTDANLALGRLLPSFFPKIFGPGENEPLSTEETMKHFSKLTQEINHFLSTNQTSNSASGAQLSKMSIEDIAMGFINVANEAMCRPIRALTQAKGHDTSEHVLACFGGAGGQHACAIARALGMKMVFIHKYSGVLSAYGLALADVVEEVQEPCSLQYEAGSFSELDRRIEQLSQRCDEILRKRGFSRSQINIEVFLHLRYEGTDCALMITATDHPSNASSCRTGDFRTAFTKRYLKEFGFTITDRPIMVDDIRVRGSGKSGIRSEVQAKAGQKSPNPIKMTQCYFEDRYLDTSVYLWEDLSCDHSIQGPAIIIDKNSTILVEPTCVAHLTEDGDVCIAVGMGTQCVLGTELNTIQLSIFSHRFMSIAEQMGRVLQRTAISTNIKERLDFSCAVFGPDGGLVSNAPHIPVHLGAMQETVQFQIKAAGGSLKEGDVILSNHPCAGGSHLPDLTVITPVFRDGVSAPVFFVASRGHHADIGGITPGSMPPHSTSLQQEGAVFTSFKLVTGGIFQEKAVTEALMAPAQYPGCSGTRNLRDNLSDLRAQVAANQRGCQLVGELITSYGLDVVQAYMGHIQSNAELAVRDMLKDFAHRQREKTGSLEVEAEDQMDDGTLIRLKVQINEEQGSAVFDFTGTGTEVWGNCNAPRAITLSALIYCLRCMVGQDIPLNQGCLAPVKVIIPPGSILQPSQNAAVVGGNVLTSQRVVDVIFKAFQVCAASQGCMNNVSFGCEKSGYYETVAGGAGAGPSWNGRGGIHTHMTNTRITDPEILESRYPVILEQFSLRPDSGGAGLYRGGDGVIRKLRFRSPVVLSVLTERRSTKPYGLHGGKNGAPGLNLLHKTDGRVLNLGAKTTISLDPGDMFSLFTPGGGGYGRMDELDGDHHLPSKRRCLHESQNKV", "length": 1291 }, "evidence": [ { "id": "A0A9J7FH15", "url": "https://omabrowser.org/oma/group/A0A9J7FH15/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O14841-1", "protein_name": "5-oxoprolinase", "gene_name": "OPLAH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEAGMLLPRDQPLDSSHIASIRMGTTVATNALLERKGERVALLVTRGFRDLLHIGTQARGDLFDLAVPMPEVLYEEVLEVDERVVLHRGEAGTGTPVKGRTGDLLEVQQPVDLGALRGKLEGLLSRGIRSLAVVLMHSYTWAQHEQQVGVLARELGFTHVSLSSEAMPMVRIVPRGHTACADAYLTPAIQRYVQGFCRGFQGQLKDVQVLFMRSDGGLAPMDTFSGSSAVLSGPAGGVVGYSATTYQQEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGENQPLSPEASRKALEAVATEVNSFLTNGPCPASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLLYAPETFVQLDQRLSRLEEQCVDALQAQGFPRSQISTESFLHLRYQGTDCALMVSAHQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDAPKAQTGPPRVDKMTQCYFEGGYQETPVYLLAELGYGHKLHGPCLIIDSNSTILVEPGCQAEVTKTGDICISVGAEVPGTVGPQLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTMLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKVPNCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGHIQANAELAVRDMLRAFGTSRQARGLPLEVSSEDHMDDGSPIRLRVQISLSQGSAVFDFSGTGPEVFGNLNAPRAVTLSALIYCLRCLVGRDIPLNQGCLAPVRVVIPRGSILDPSPEAAVVGGNVLTSQRVVDVILGAFGACAASQGCMNNVTLGNAHMGYYETVAGGAGAGPSWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRRGSGGRGRFRGGDGVTRELLFREEALLSVLTERRAFRPYGLHGGEPGARGLNLLIRKNGRTVNLGGKTSVTVYPGDVFCLHTPGGGGYGDPEDPAPPPGSPPQALAFPEHGSVYEYRRAQEAV", "length": 1288 }, "evidence": [ { "id": "A0A9J7FH15", "url": "https://omabrowser.org/oma/group/A0A9J7FH15/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P97608-1", "protein_name": "5-oxoprolinase", "gene_name": "Oplah", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEEGVLLPRGRPLDTSRIASIRMGTTVATNALLERQGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVLEVDERVVLYRGEPGAGSPVKGRTGDLLEIQQPVDLEALRGKLEGLLSRGIHSLAVVLMHSYTWAQHEQQVGTLARELGFTHVSLSSEVMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKNVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSATTYHLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVAMEVNSFLTNGPCPASQLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFAQLDQRLSRLEEQCVDALQVQGFPRSQISTESFLHLRYQGTDCALMVSAHQHPATACSPRAGDFGAAFVERYMREFGFIIPERPVVVDDVRVRGTGRSGLQLEDTPKIQTGPPHVEKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVTDTGDIRISVGAEGPSMADTRLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGHIQANAELAVRDMLRAFGTSRQARGLPLEVSAEDHMDDGSPICLRVQINLSQGSAVFDFTGSGSEVFGNLNAPRAITLSALIYCLRCLVGRDIPLNQGCLAPVRVIIPKGSILDPSPEAAVVGGNVLTSQRVVDVILGAFGACSASQGCMNNVTLGNARMGYYETVAGGAGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRPGSGGRGRFRGGDGVVRELVFREEALLSVLTERRAFQPYGLHGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDVFCLHTPGGGGYGDPEDPAPPPGSPPLFPAFPERGSVFEYRRAQEAV", "length": 1288 }, "evidence": [ { "id": "A0A9J7FH15", "url": "https://omabrowser.org/oma/group/A0A9J7FH15/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54NW6-1", "protein_name": "5-oxoprolinase", "gene_name": "oplah", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIDKLKKSIKFNIDRGGTFTDIYAEFPYEPYYIVEKLLSVDPENYSDAPREGIRRILERIQGKSISKENVDTYAIKSIRMGTTVGTNALLERKGEKVLLVTSKGFRDLLQIGNQSRPKIFELNITKPELIYNSVVELDERVQIVTNDQVLNDIKLESPNSLKKGTTGDYIKVLEIPNRDKIKSELLKYFVKGIKSIAVVFIHSYTFHDHELLVGEIAKEIGFEHISLSHQLMPMIKAVPRGLTSCVDAYLTPLIELYIKNFTKGFDSNIGDVDISFMMSDGGLCPVDSFRGFRSILSGPAGGVVGYSKTTSTVIESHKNNNGNNEIKQQPIIGFDMGGTSTDVSRYNGTLDHVFETEISGLTIQAPQLDIHTVAAGGGSRLFFKSGLFLVGPESVGAHPGPVCYKKNGQLAITDANLLLGRLLPEYFPPIFGPNQNEPLDLEATKKAFKELTDEINQFQQNNNLPLMTEDQVAFGFIRVANEAMCRPIRNITEAKGFDCSQHVLACFGGAGGQHSCSIAQNLGMPKVFIHRFSGILSAYGLGLADLVIDTQEPCSLIYNKENKSTFEKQLNQLKENAKQQLLNKGFPEEEIFCEGFLNLRFSGTDTAMMIKTPDNHDYEAEFKSNYKREFGFLILGRDLLIDDIRVRVHARGSDLNSLRINDSTGEPLKPETIQKCYFESVGRIDTPIYLLKSLCGGDSIDGPAIIIDNTTTIVVEPNCKANILKPSGNIEILIGGGKSKTVTTELDPIMLSVFSHRFMSIAEQMGKIIIRTSISTNIKERLDFSCALFSPDGGLVANAPAIPIHVGSMQNAVKYQVETLGSNWKEGEVVLSNHPQAGGSHLPDLTVMTPVYHKGEIVFFVASRGHHADIGGITPGSMPPFSKSISEEGAAIMSLKIVKDGHFQEEAVRKTFEKSRNLSDNISDLKAQIAANHKGIQLMQELINHYGLDVVHAYMYHIQKNAELAVRDMLYDISISNNLKPLDTLISTDYMDDGSKIELKLTIDREKKSAIFDWSGSGVEVYGNTNAPTSITLSATIYSLRAMVKSEIPLNQGCLAPILTVIPPGSILNPSFDSAVVGGNVLTSQRLTDVILSAFGACANSQGCMNNLTFGDETLGYYETIAGGTGAGPNFNGFTAVQSHMTNTRITDVEIMEKRYPVIVKEFSVRYGSGGDGKFKGGDGVVREIQFLKNFTVSILSERRSLQPRGLMGGENAERGLNLVLKNNGKYINIGSKNSINIERNESIIIFTPGGGGFGQKDSMITDN", "length": 1265 }, "evidence": [ { "id": "A0A9J7FH15", "url": "https://omabrowser.org/oma/group/A0A9J7FH15/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8K010-1", "protein_name": "5-oxoprolinase", "gene_name": "Oplah", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSPEERFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQERGVLLPRGRPLDTSHIASIRMGTTVATNALLERQGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVVEVDERVLLYRGEPGAGSPVKGCTGDLLEIQQPVDLAALRGKLEGLLTRGIHSLAVVLMHSYTWAQHEQQVGTLARELGFTHVSLSSEVMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKNVQVLFMRSDGGLAPMDAFSGSRAVLSGPAGGVVGYSTTTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVAMEVNSFLASGPCPASQLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFAQLDQRLSRLEEQCVDALQAQGFSRSQISTESFLHLRYQGTDCALMVSANQHPATTCSPRAGDFGAAFVERYMREFGFIIPERSVVVDDVRVRGTGRSGLQLEETSKIQSGPPHVEKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNSTILVEPGCQAEVIETGDIRISVGAEAPSMIDTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQSRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALQAPGKISGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGHIQANAELAVRDMLRAFGTSRQARGLPLEVSAKDHMDDGSPICLHVQINLNQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRCLVGRDIPLNQGCLAPVQVIIPKGSILDPSPEAAVVGGNVLTSQRVVDVILGAFGACAASQGCMNNVTLGNARMGYYETVAGGAGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRPGSGGRGRFRGGDGVVRELVFREEALLSVLTERRAFQPYGLHGGEPGTRGLNLLIRKDGRTVNLGGKTSVTVYPGDAFCLHTPGGGGYGDPEDPAPPPGSPPLYPAFPERGSVYEYRRAQEAV", "length": 1288 }, "evidence": [ { "id": "A0A9J7FH15", "url": "https://omabrowser.org/oma/group/A0A9J7FH15/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FIZ7-1", "protein_name": "5-oxoprolinase 1", "gene_name": "OXP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGTVIEGKLRFCIDRGGTFTDVYAEIPGHSDGHVLKLLSVDPSNYDDAPVEGIRRILEEYTGKKIPRTSKIPTDKIQWIRMGTTVATNALLERKGERIALCVTKGFKDLLQIGNQARPDIFDLTVAKPSNLYEEVIEVDERVVLALEDDDDDEGSLIKGVSGEFLRVVKPFDGEGLKPLLKGLLDKGISCLAVVLMHSYTYPKHEMDVEKLALEMGFRHVSLSSALTPMVRAVPRGLTATVDAYLTPVIKEYLSGFISKFDDDLGKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYDGSYEQVIETQIAGTIIQAPQLDINTVAAGGGSKLKFQFGAFRVGPDSVGAHPGPVCYRKGGELAVTDANLVLGFVIPDYFPSIFGPNEDQPLDVAATREAFEKLAGQINIYRKSQDPSAKDMSVEEIAMGFVSVANETMCRPIRQLTEMKGHETKNHALACFGGAGPQHACAIARSLGMKEVLVHRYCGILSAYGMGLADVIEDAQEPYSAVYGPESLSEVFRRETVLLREVREKLQEQGFGDGNISTETYLNLRYDGTDTAIMVKGKKTGDGSAFDYAAEFLKLFEQEYGFKLQNRNLLICDVRVRGIGVTSILKPRAVEAAPVTPKVERHYKVYFEGGWHDTPLFKLENLGFGHEILGPAIIMNGNSTVIVEPQCKAIITKYGNIKIEVEPATSSVKLAENVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFSPDGGLVANAPHVPVHLGAMSSTVRWQLKHWGENLNEGDVLVTNHPCAGGSHLPDITVITPVFDKGKLVFFVASRGHHAEVGGITPGSMPPFSKAIWEEGAAIKAFKVVEKGVFQEEGIVKLLQFPSSDETTTKIPGTRRIQDNLSDLQAQIAANQRGISLIKELIEQYGLGTVQAYMKYVQLNAEEAVREMLKSVANRVSSETPNSRVGNSVTIEEEDYMDDGSIIHLKLTIDADKGEASFDFTGTSPEVYGNWNAPEAVTSAAVIYCLRCLVNVDIPLNQGCLAPVEIRIPAGSFLSPSEKAAVVGGNVLTSQRVTDVVLTAFQACACSQGCMNNLTFGDDTFGYYETIGGGCGAGPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFGLRENSGGNGLHKGGDGLVREIEFRKPVVVSILSERRVHSPRGLNGGQNGLRGANYLITKDKRRIYLGGKNTVHVEAGEILQILTPGGGGFGSNI", "length": 1266 }, "evidence": [ { "id": "A0A9J7FH15", "url": "https://omabrowser.org/oma/group/A0A9J7FH15/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9W247-1", "protein_name": "5-oxoprolinase", "gene_name": "Dmel\\CG4752", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSGTKYCFAIDRGGTFTDVLCICPNGKVRTMKLLSEDPERYSDAPREGIRRILKEETGEDLAASGLVDTSKIGWVRMGTTVATNALLERKGDPVVLVVNSGFRDLLYIGNQARPKIFDLNIRKPANLYKSVVEVDCRIVPKQADRCELNHSWKELEGVAGTKYLEVRPVDEVAVRQALSDARDQGVSSVSVVLAHSYACPEHELRVGAIARELGFSHVTLSHQAMPMCRVVARGYTACAEAYLTPHVDRYLASFKSGFDKQLEGVDVLFMQSDGGLTNMENFRGARAILSGPAGGVVGYALTGARETELPLIGFDMGGTSTDVSRYAGTYEHVIESTTAGVTIQAPQLDINTVAAGGGSRLFFRSGIFVVGPESAGSHPGPACYKKGGPLTVTDANLILGRILPQYFPKIFGPQENEPLDHEIARSKFVELQAEINNYLKSSGDNRVLSVEDVALGFIRVANETMCRPIRALTQSRGLDTANHVLSCFGGAGGQHACSIARNLGIAKVVVHKYAGILSAYGMALADVVQEFQEPNGLEFSDANAQQLKERLDALSKQCQDKLSEQGFKRIELEPFLHLRYEGTDGALMVAPSTGKQSSDSNPLLAAYGDFHATFLERYRTEFGFVLQNRRIIVDDIRIRGLGKNETPPESKVQAAAEAKPPAEANTRLYFDQGAFDSPIYLTKNLLAGHRITGPAVLIDQLSTIVVEPECGIQVTQFGDLIMDVKTGGKHGINADLDPVHLSIFSHRFMSIAEQMGRVLQRTSISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQYQLRVRGETLKNGDVILANHPSAGGSHLPDLTVITPVFYETHPRPVFFVASRGHHADIGGITPGSMPPHSTSLAQEGAAFKSFLIVENGLFQEQQIIEQLTTPTAAKGAVGTRNLSDNLSDLKAQIAANHKGIQLVAELIGSYGLDVVQAYMSHIQKNAELAVRDMLRQIGRDTLERTGSTVLEAKEFMDDGSPIALKVTIDAEQGSALCDFTGSGVEVWGNCNAPRAITLSALIYCLRCMVGHDVPLNQGCLAPIQVIIPKNSILDPSEGAAVVGGNVQTSQRIVDTVLKAFGVCAASQGCMNNITIGDESWGYYETVAGGAGAGPGWHGAGGVHTHMTNTRITDPEILELRYPMILKRFCLRTDGSGGRGQFHGGEGVERDLLFRKPVTLSVLTERRTLQPYGLAGGESGKSGRNLVVKRDGRVIALAGKTCIDVEAGDTFAMKTPGGGGYGPIEDFSKSGESLNQETSKRYVERGTVFNYLQCQESA", "length": 1294 }, "evidence": [ { "id": "A0A9J7FH15", "url": "https://omabrowser.org/oma/group/A0A9J7FH15/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" } ], "pmid": "" }, { "name": "5-oxoprolinase (ATP-hydrolyzing) activity", "id": "GO:0017168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017168", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glutathione metabolic process", "id": "GO:0006749", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006749", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FH15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1036, "end_pos": 1038, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1120, "end_pos": 1122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1223, "end_pos": 1225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 814, "end_pos": 816, "annotation": "n_glycosylation_sequon" }, { "start_pos": 815, "end_pos": 817, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FH15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" }, { "id": "PF19278", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19278" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Acetophenone carboxylase-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 663, "end_pos": 829, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FH15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" }, { "id": "PF01968", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01968" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Hydantoinase A/oxoprolinase", "eco_id": "ECO_0000259", "start_pos": 348, "end_pos": 647, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FH15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" }, { "id": "PF02538", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02538" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Hydantoinase B/oxoprolinase", "eco_id": "ECO_0000259", "start_pos": 851, "end_pos": 1373, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FH15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" }, { "id": "PF05378", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05378" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Hydantoinase/oxoprolinase N-terminal", "eco_id": "ECO_0000259", "start_pos": 127, "end_pos": 328, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FH15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH15" }, { "id": "PF15058", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15058" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Speriolin N-terminal", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 80, "start_aa": "Met", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1036, "end_pos": 1038 }, { "start_pos": 1120, "end_pos": 1122 }, { "start_pos": 1223, "end_pos": 1225 }, { "start_pos": 814, "end_pos": 816 }, { "start_pos": 815, "end_pos": 817 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A9J7F9B7-1", "uniprot_ac": "A0A9J7F9B7", "uniprot_id": "A0A9J7F9B7_CRIGR", "mass": { "chemical_mass": 46165.0, "monoisotopic_mass": 46165.0 }, "refseq": { "ac": "XP_027252153", "name": "periphilin-1 isoform X10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252153" }, "gene_names": [ { "name": "Pphln1", "type": "recommended", "evidence": [ { "id": "A0A9J7F9B7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7" } ] }, { "name": "Pphln1", "type": "synonym", "evidence": [ { "id": "XP_027252153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252153" } ] } ], "protein_names": [ { "name": "Periphilin-1 isoform X10", "type": "synonym", "evidence": [ { "id": "A0A9J7F9B7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7/entry#names_and_taxonomy" } ] }, { "name": "periphilin-1 isoform X10", "type": "synonym", "evidence": [ { "id": "XP_027252153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252153" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252153", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252153" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pphln1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7", "locus": {} } ], "crossref": [ { "id": "A0A9J7F9B7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F9B7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22896", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22896", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770109", "url": "https://www.ncbi.nlm.nih.gov/gene/100770109", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770109", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770109", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2QND2", "url": "https://www.orthodb.org/?gene=A0A8C2QND2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F9B7", "url": "https://www.orthodb.org/?gene=A0A9J7F9B7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15836", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15836", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15836:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15836:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25234", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25234", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252153", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252153", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MUN4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QND2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QND2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QND2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Y5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERAPPRSHASDGYHRVVNVVPKRPPLLDKRPPLLDKRPPLLARPDEGGYSRYYSHVDYRECDEGRSFSHDRRSGPPHRGDDSGYRWTRDDHSTSRQPEYRDMRDGFRRKSFYSSHYSRERSPHKRDAPFFRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRKSSHVGASYKRKNEANPGRGKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 401, "header": "tr|A0A9J7F9B7-1|A0A9J7F9B7_CRIGR Isoform 1 of Periphilin-1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUN4/entry", "sequence": { "sequence": "MWSEGRYDYERLPRERAPPRSHASDDSGYRWTRDDHSTSRQPEYRDMRDGFRRKSFYSSHYSRERSPHKRDAPFFRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRKSSHVGASYKRKNEANPGRGKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 312, "header": "tr|A0A8C2MUN4-1|A0A9J7F9B7_CRIGR Computationally mapped isoform of Periphilin-1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QND2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QND2/entry", "sequence": { "sequence": 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"MLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERAPPRSHASDGYHRVVNVVPKRPPLLDKRPPLLDKRPPLLARPDEGGYSRYYSHVDYRECDEGRSFSHDRRSGPPHRGDDSGYRWTRDDHSTSRQPEYRDMRDGFRRKSFYSSHYSRERSPHKRDAPFFRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRKSSHVGASYKRKNEANPGRGKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 401, "header": "tr|A0A9J7F9B7-1|A0A9J7F9B7_CRIGR Isoform 1 of Periphilin-1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FAB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAB6/entry", "sequence": { "sequence": "MLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERAPPRSHASDGYHRVVNVVPKRPPLLDKRPPLLDKRPPLLARPDEGGYSRYYSHVDYRECDEGRSFSHDRRSGPPHRGDDSGYRWTRDDHSTSRQPEYRDMRDGFRRKSFYSSHYSRERSPHKRDAPFFRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRSKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 382, "header": "tr|A0A9J7FAB6-1|A0A9J7FAB6_CRIGR Computationally mapped isoform of Periphilin-1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB87/entry", "sequence": { "sequence": "MLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERAPPRSHASDDSGYRWTRDDHSTSRQPEYRDMRDGFRRKSFYSSHYSRERSPHKRDAPFFRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRSKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 313, "header": "tr|A0A9J7FB87-1|A0A9J7FB87_CRIGR Computationally mapped isoform of Periphilin-1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6U3/entry", "sequence": { "sequence": "MLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERAPPRSHASDGYHRVVNVVPKRPPLLDKRPPLLDKRPPLLARPDEGGYSRYYSHVDYRECDEGRSFSHDRRSGPPHRGDDSGYRWTRDDHSTSRQPEYRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRSKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 351, "header": "tr|A0A9J7J6U3-1|A0A9J7J6U3_CRIGR Computationally mapped isoform of Periphilin-1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Y5/entry", "sequence": { "sequence": "MLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERAPPRSHASDGYHRVVNVVPKRPPLLDKRPPLLDKRPPLLARPDEGGYSRYYSHVDYRECDEGRSFSHDRRSGPPHRGDDSGYRWTRDDHSTSRQPEYRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRKSSHVGASYKRKNEANPGRGKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 370, "header": "tr|A0A9J7J9Y5-1|A0A9J7J9Y5_CRIGR Computationally mapped isoform of Periphilin-1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JC03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC03/entry", "sequence": { "sequence": "MLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERAPPRSHASDDSGYRWTRDDHSTSRQPEYRDMRDGFRRKSFYSSHYSRERSPHKRDAPFFRESPVGRKDSPHSRSGSSLSSRSYSPERSRTHSVHQSQNRKSSHVGASYKRKNEANPGRGKERSIQSLKTSRDTSPSSSSAVSSSKVLDKPSQLTEKELAEAASKWANEKPEKGDENNLTEISEFETGSMAPLFIDQTEEPESNTTDGTELYEDSQISSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF", "length": 332, "header": "tr|A0A9J7JC03-1|A0A9J7JC03_CRIGR Computationally mapped isoform of Periphilin-1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Pphln1 PE=4 SV=1 CANONICAL=A0A9J7F9B7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUN4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUN4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUN4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUN4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770109", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770109", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7" } ], "pmid": "" }, { "name": "negative regulation of gene expression, epigenetic", "id": "GO:0045814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045814", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7" } ], "pmid": "" }, { "name": "protein localization to heterochromatin", "id": "GO:0097355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F9B7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9B7" }, { "id": "PF25234", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Periphilin-1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 311, "end_pos": 393, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 282, "end_pos": 284 }, { "start_pos": 308, "end_pos": 310 }, { "start_pos": 392, "end_pos": 394 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F6X6-1", "uniprot_ac": "A0A9J7F6X6", "uniprot_id": "A0A9J7F6X6_CRIGR", "mass": { "chemical_mass": 67758.0, "monoisotopic_mass": 67758.0 }, "refseq": { "ac": "XP_016834756", "name": "protein DENND6B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834756" }, "gene_names": [ { "name": "Dennd6b", "type": "recommended", "evidence": [ { "id": "A0A9J7F6X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6" } ] }, { "name": "Dennd6b", "type": "synonym", "evidence": [ { "id": "XP_016834756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834756" } ] } ], "protein_names": [ { "name": "Protein DENND6B isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F6X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6/entry#names_and_taxonomy" } ] }, { "name": "protein DENND6B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016834756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834756" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614727.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016834756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834756" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6X6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dennd6b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6", "locus": {} } ], "crossref": [ { "id": "A0A9J7F6X6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F6X6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754914", "url": "https://www.ncbi.nlm.nih.gov/gene/100754914", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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Classification" ] }, { "id": "A0A9J7FAP5", "url": "https://www.orthodb.org/?gene=A0A9J7FAP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FB35", "url": "https://www.orthodb.org/?gene=A0A9J7FB35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016834756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834756", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MV43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MV43-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6X6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAP5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVPLATGPRQAGGELGTTRSTSSGRAARASAIPWARFSAWLECVCVVTFDLELGQALELVYPSDFQLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSLWHGDDKPYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVHIPSRVDKLESNPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDAQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKSPPQICPFRQDDFLRSLEHSGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAISEHRGLDEGQVGGGSGRPSPETSGKAGAGTEPPGPREGGDTAACSAVHRHSYWLPAQGPTSSPVPSLGQSQLVWSWRPKSAKFPLR", "length": 603, "header": "tr|A0A9J7F6X6-1|A0A9J7F6X6_CRIGR Isoform 1 of Protein DENND6B isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd6b PE=3 SV=1 CANONICAL=A0A9J7F6X6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MV43-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV43/entry", "sequence": { "sequence": "MEVPLATGPRQAGGELGTTRSTSSGRAARASAIPWARFSAWLECVCVVTFDLELGQALELVYPSDFQLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSLWHGDDKPYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVHIPSRVDKLESNPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDAQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKSPPQICPFRQDDFLRSLEHSGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAICEANIEAWMKDKSEVEVVDLALKLREKLVRAQSHQVPVKEVTLQRAQLYIDTVIGSLPKDLQAVLCPP", "length": 585, "header": "tr|A0A8C2MV43-1|A0A9J7F6X6_CRIGR Computationally mapped isoform of Protein DENND6B isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd6b PE=3 SV=1 CANONICAL=A0A9J7F6X6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6/entry", "sequence": { "sequence": "MEVPLATGPRQAGGELGTTRSTSSGRAARASAIPWARFSAWLECVCVVTFDLELGQALELVYPSDFQLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSLWHGDDKPYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVHIPSRVDKLESNPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDAQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKSPPQICPFRQDDFLRSLEHSGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAISEHRGLDEGQVGGGSGRPSPETSGKAGAGTEPPGPREGGDTAACSAVHRHSYWLPAQGPTSSPVPSLGQSQLVWSWRPKSAKFPLR", "length": 603, "header": "tr|A0A9J7F6X6-1|A0A9J7F6X6_CRIGR Isoform 1 of Protein DENND6B isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd6b PE=3 SV=1 CANONICAL=A0A9J7F6X6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FAP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAP5/entry", "sequence": { "sequence": "MEVPLATGPRQAGGELGTTRSTSSGRAARASAIPWARFSAWLECVCVVTFDLELGQALELVYPSDFQLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSLWHGDDKPYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVHIPSRVDKLESNPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDAQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKSPPQICPFRQDDFLRSLEHSGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAICEAQNIEAWMKDKSEVEVVDLALKLREKLVRAQSHQVPVKEVTLQRAQLYIDTVIGSLPKDLQAVLCPP", "length": 586, "header": "tr|A0A9J7FAP5-1|A0A9J7FAP5_CRIGR Computationally mapped isoform of Protein DENND6B isoform X2 OS=Cricetulus griseus OX=10029 GN=Dennd6b PE=3 SV=1 CANONICAL=A0A9J7F6X6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB35/entry", "sequence": { "sequence": "MRQCGGQRSLWHGDDKPYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVHIPSRVDKLESNPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDAQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKSPPQICPFRQDDFLRSLEHSGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAISEHRGLDEGQVGGGSGRPSPETSGKAGAGTEPPGPREGGDTAACSAVHRHSYWLPAQGPTSSPVPSLGQSQLVWSWRPKSAKFPLR", "length": 506, "header": "tr|A0A9J7FB35-1|A0A9J7FB35_CRIGR Computationally mapped isoform of Protein DENND6B isoform X4 OS=Cricetulus griseus OX=10029 GN=Dennd6b PE=3 SV=1 CANONICAL=A0A9J7F6X6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 577, "start_aa": "Thr", "end_pos": 577, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr577", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MV43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV43" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MV43", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV43" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754914", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754914", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AUV2-1", "protein_name": "DENN domain containing 6B", "gene_name": "DENND6B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDAGSGAEPHRARGRLGAPCSGARAPGAPWARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRIRQCGGQRRPWHTDDRHCDSGAPASLQREHAHYFGYVYFRQVKDSSARRGYFQKSLVLVSRLPFVRLFQALLSLVAPEYFDKLTPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVLQVHIPSRVDKPESGPPAQRSHENLLPAPVVLSSVHELDLFRCFQPVLAHVQMLWELVLLGEPLVVLAPSPAVSSEMVLALTSCLQPLKFCCDYRPYFTVHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPRMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLRRLLKGLQKKRPSDVQTALLRRHLLELTQSFIFPLEHYMASLMPLQKSITPWKTPPQIRPFRQDDFLRSLEHAGPQLTCVLKGDWLGLYRRFFKSPHFDGWYRQRRKEMAQKLEALHLEAICEANIEVWMKGKSEVEVVDLVLKLRERLVRAQGHQLPVKEATLKQARLYIETVISSLPKDLQVILCPP", "length": 580 }, "evidence": [ { "id": "A0A9J7F6X6", "url": "https://omabrowser.org/oma/group/A0A9J7F6X6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0XV55-1", "protein_name": "DENN domain containing 6B", "gene_name": "DENND6B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAQSAFTWIFSWMLQKSQRSLYLRCWMISGVLRGSAVTGMLTKHALPGLPLSMHCKPRLSDSSSQISEAQTELCIPSSFSCPSFAICSCCEQHLWPARRPEPLNKCSDRCCALRQAWWALGVSRLVYPYDFRLTEKEKTSICYLSFPDSYSGGLGDTQFSFRLRQSGGQRTTHYEDDGKYNREAPLTLQRESAHYFGYVYFRQVKDSSMKRGYFQKSLVLVSRLPYVNLFQSLLQLIAPEYFDKLEPCLEAVCNEIDQWPPPVPGQTLNLPVMGVVIQVRIPSRVDKPGSSPVKQFNQENLLPAPLVLPSIHELDLFRCFQPVLIHVQMLWELMLLGEPIVVMAPSPTVSSEMVLALTSCLAPLRYCCDYRPYFTIHDSEFKEYTTRTQAPPNIVVGVTNPFFIKTLQHWPHILRVGELKMSGDLPKQVKVKKLTKLKTLDTKPGIYTSYKTFLHKDKTLIKRLLKGIQRKRPSEVQSALLRRHLLELTQSFIIPLEHYIASLMPLQRAITPWKNPPQIRPFRQDDFMKTLEHAGPQLTCVLKGDWLGLYRRFFRSPNFDGWYRQRHKEMTQKLEALHLEAICEANIVAWMKDKSEVEIVDLVLKLREKLVRARCQHLPVKEETLQRVGLYIETIIDSLPEDLQAVLHHH", "length": 650 }, "evidence": [ { "id": "A0A9J7F6X6", "url": "https://omabrowser.org/oma/group/A0A9J7F6X6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZAE3-1", "protein_name": "DENN domain containing 6B", "gene_name": "Dennd6b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVLVGPGPRQAGGGLGAARSTSSGRAARTTEVPWARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSNICYLAFPDSHSGCLGDTQFSFRMRQCGGQKSLWHVDDRSYNSKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVRIPSRVDKLESSPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGIQKKRPWDVQSALLRRYLLELTQSFIIPLEHYMASLMPLQKNITPWKSPPQICPFRQDDFLQSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAICEANIEAWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEVTLQRVQLYIDTVIGSLPKDLQAVLCPP", "length": 585 }, "evidence": [ { "id": "A0A9J7F6X6", "url": "https://omabrowser.org/oma/group/A0A9J7F6X6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NEG7-1", "protein_name": "Protein DENND6B", "gene_name": "DENND6B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALELVYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAPVALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAPVVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLRFCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP", "length": 585 }, "evidence": [ { "id": "A0A9J7F6X6", "url": "https://omabrowser.org/oma/group/A0A9J7F6X6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9V7-1", "protein_name": "Protein DENND6B", "gene_name": "Dennd6b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVPVGPGPRQAGGGLGATRSSSSGRAARTAEMPWARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSSICYLAFPDSHSGCLGDTQFSFRMRQCGGQRSLWQVDDRSYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPIMGVVIQVRIPSRVDKLESSPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDVQSALLRRHLLELTQSFIIPLEHYMASLMPLQKNITPWKSPPQICPFRQDDFLRSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAICEANIEAWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEVTLQRAQLYIDTVIGSLPKDLQAVLCPP", "length": 585 }, "evidence": [ { "id": "A0A9J7F6X6", "url": "https://omabrowser.org/oma/group/A0A9J7F6X6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6X6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6X6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F6X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X6" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 499, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 577 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FCK6-1", "uniprot_ac": "A0A9J7FCK6", "uniprot_id": "A0A9J7FCK6_CRIGR", "mass": { "chemical_mass": 93024.0, "monoisotopic_mass": 93024.0 }, "refseq": { "ac": "XP_027255068", "name": "MAP7 domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255068" }, "gene_names": [ { "name": "Map7d1", "type": "recommended", "evidence": [ { "id": "A0A9J7FCK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6" } ] }, { "name": "Map7d1", "type": "synonym", "evidence": [ { "id": "XP_027255068", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255068" } ] } ], "protein_names": [ { "name": "MAP7 domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027255068", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255068" }, { "id": "A0A9J7FCK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255068" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Map7d1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCK6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763665", "url": "https://www.ncbi.nlm.nih.gov/gene/100763665", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763665", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763665", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FCK6", "url": "https://www.orthodb.org/?gene=A0A9J7FCK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15073:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15073:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05672", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05672", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255068", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MX47", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MX47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MX47-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MX47-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N039", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N039", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N039-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N039-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEB8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FF24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FF24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE09", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE09-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K188", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K188", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K188-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K188-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4F9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4F9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTSGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKQKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 841, "header": "tr|A0A9J7FCK6-1|A0A9J7FCK6_CRIGR Isoform 1 of MAP7 domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MX47-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MX47/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTSGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 808, "header": "tr|A0A8C2MX47-1|A0A9J7FCK6_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N039-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N039/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGHRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 768, "header": "tr|A0A8C2N039-1|A0A9J7FCK6_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FA62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA62/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 803, "header": "tr|A0A9J7FA62-1|A0A9J7FA62_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTSGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKQKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 841, "header": "tr|A0A9J7FCK6-1|A0A9J7FCK6_CRIGR Isoform 1 of MAP7 domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FEB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEB8/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKQKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 804, "header": "tr|A0A9J7FEB8-1|A0A9J7FEB8_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X9 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FF24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF24/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGHRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKQKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 801, "header": "tr|A0A9J7FF24-1|A0A9J7FF24_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ02/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 837, "header": "tr|A0A9J7GQ02-1|A0A9J7GQ02_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQ57-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ57/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGHRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 800, "header": "tr|A0A9J7GQ57-1|A0A9J7GQ57_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X12 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G7/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTSGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 840, "header": "tr|A0A9J7J8G7-1|A0A9J7J8G7_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV5/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTSGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKQKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 809, "header": "tr|A0A9J7JDV5-1|A0A9J7JDV5_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JE09-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE09/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQGRGSGPGRRPTRGRAGASLAPGPHPDRTHPSAAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKQKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 838, "header": "tr|A0A9J7JE09-1|A0A9J7JE09_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUG3/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKQKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 772, "header": "tr|A0A9J7JUG3-1|A0A9J7JUG3_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X13 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K188-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K188/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRGSRCSVSAVNLPKHVDSIINKRLSKSSATLWNSPSRNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 805, "header": "tr|A0A9J7K188-1|A0A9J7K188_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4F9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F9/entry", "sequence": { "sequence": "MENGPRAEPGPGAPAAMIARIPAEPRPSPEGDPSPPPPPTPMSALVPDTPPDTPPAMKNATSPKQLPLEPESPTGQISPRPAPPQEESPCSEAKSRGTTPPATGPRDARPSRRSSQPSPTTVPASDSPPTKQDVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKVLREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGRKTNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTLPRNGRDQAVPVCPRSASASPLTPCSAPRSAHRCTPSGERAERRKPGAGGSPALARRRLEAAPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASVRPRLSTGAEHSPKSKARPSSPSTTWHRPASPCPSPGPGHALPPKPPSPRGTTASPKGRVRRKEEAKESPSPSGPEDKNHSKSRTIEEKEPVALVSPAPSPVPSPTPAQPQKEQPSTETPADTAVPTAPPTAAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERKLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLERERHFQKEEQERQERRKRLEEIMKRTRKSEAAETKKQDGKETTANNSGPDPVKAVETRPSGLQKDSVQKEELAPQEPQWSLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGEKSLGRTPEGLLPFAEAEAFLKKAVVQPPQVTEVL", "length": 771, "header": "tr|A0A9J7K4F9-1|A0A9J7K4F9_CRIGR Computationally mapped isoform of MAP7 domain-containing protein 1 isoform X14 OS=Cricetulus griseus OX=10029 GN=Map7d1 PE=3 SV=1 CANONICAL=A0A9J7FCK6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 40, "start_aa": "Thr", "end_pos": 40, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr40", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 554, "start_aa": "Thr", "end_pos": 554, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr554", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 585, "start_aa": "Thr", "end_pos": 585, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr585", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MX47", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MX47" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MX47", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MX47" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763665", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763665", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 739, "end_pos": 741, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 40, 554, 585 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 286, "end_pos": 288 }, { "start_pos": 527, "end_pos": 529 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 739, "end_pos": 741 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F659-1", "uniprot_ac": "A0A9J7F659", "uniprot_id": "A0A9J7F659_CRIGR", "mass": { "chemical_mass": 104593.0, "monoisotopic_mass": 104593.0 }, "refseq": { "ac": "XP_027252058", "name": "serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252058" }, "gene_names": [ { "name": "Ppp6r2", "type": "recommended", "evidence": [ { "id": "A0A9J7F659", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659" } ] }, { "name": "Ppp6r2", "type": "synonym", "evidence": [ { "id": "XP_027252058", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252058" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X12", "type": "synonym", "evidence": [ { "id": "A0A9J7F659", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X12", "type": "synonym", "evidence": [ { "id": "XP_027252058", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252058" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252058" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp6r2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659", "locus": {} } ], "crossref": [ { "id": "100755203", "url": "https://www.ncbi.nlm.nih.gov/gene/100755203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755203", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F659", "url": "https://www.orthodb.org/?gene=A0A9J7F659", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F670", "url": "https://www.orthodb.org/?gene=A0A9J7F670", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252058", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MZH2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MZH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F659-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F670", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F670", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F670-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F670-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F983", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F983", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F983-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F983-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6T1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6T1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFNAWTVCPFRYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 956, "header": "tr|A0A9J7F659-1|A0A9J7F659_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X12 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MZH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH2/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFKYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 921, "header": "tr|A0A8C2MZH2-1|A0A9J7F659_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X12 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F659-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFNAWTVCPFRYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 956, "header": "tr|A0A9J7F659-1|A0A9J7F659_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X12 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F670-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F670/entry", "sequence": { "sequence": "MFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 808, "header": "tr|A0A9J7F670-1|A0A9J7F670_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X20 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F983-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F983/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFKYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 948, "header": "tr|A0A9J7F983-1|A0A9J7F983_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X14 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FAQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAQ5/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFNAWTVCPFRYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAWLSVRTALC", "length": 810, "header": "tr|A0A9J7FAQ5-1|A0A9J7FAQ5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X9 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTG3/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFNAWTVCPFRYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRDCRGRWESFVEETLMETNRRNTVDLAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 925, "header": "tr|A0A9J7GTG3-1|A0A9J7GTG3_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X18 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTP2/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFNAWTVCPFRYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRDCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 952, "header": "tr|A0A9J7GTP2-1|A0A9J7GTP2_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X13 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6T1/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFNAWTVCPFRYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 934, "header": "tr|A0A9J7J6T1-1|A0A9J7J6T1_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X15 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBX3/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKVRFNAWTVCPFRYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 929, "header": "tr|A0A9J7JBX3-1|A0A9J7JBX3_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X17 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBY1/entry", "sequence": { "sequence": "MFWKFDLNTTSHIDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPLDMEEKISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVIMFLKKKEKFIGLMLKHVGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRLVELIHPHQDEDRQSNASQALCDIIRLGRDQGSQLQEAVDPDPLLLTLESQDCVEQLLKNMFDGDQMESCLVSGMQVLLALLEPRRVGTEGLVDSFSQGLERSESVNSSILHGIEPWLKNFHQLLLHPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSINQELCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILSHAAREEPAEASGSNGKVEPLQGSGDGTGKPETPQSVTSLPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQTHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDEEFADQDDNINAPFDRIAEINFNIEADEDSPTAALFEACCSDRIQPFDDEEEEDIWEDEETRCTARVMARARFGAPHVSENYSKNSLEHGGQDRKAGLAAARNVPGLATPSSPTQKEGPRSDSDLEGTTWTAVFDEPVNPMSAAPGASRDVGSSVWAAGPSAPEEKGWAKFTDFQPFCCSESGPRCSSPVDMDHSHAEGGQSPGPEKAFGPTSPCAWNVCVTRKAPLVASDSSSSGGSDSEEDEKAAGAVEAVCTGHGGKASPLPKTEEAVASRAECTDSTVLAPACPSSPEVIISSAVATTAPSKAGPPTATIVVSSSVATTVPPGPIMAVTTAAPALVATLGTKDRKTDALPEGAALNGPV", "length": 929, "header": "tr|A0A9J7JBY1-1|A0A9J7JBY1_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X16 OS=Cricetulus griseus OX=10029 GN=Ppp6r2 PE=3 SV=1 CANONICAL=A0A9J7F659-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 702, "start_aa": "Thr", "end_pos": 702, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr702", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 805, "start_aa": "Thr", "end_pos": 805, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr805", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MZH2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZH2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755203", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659" } ], "pmid": "" }, { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F659" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 674, "end_pos": 676, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 702, 805 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 309, "end_pos": 311 }, { "start_pos": 674, "end_pos": 676 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F5K2-1", "uniprot_ac": "A0A9J7F5K2", "uniprot_id": "A0A9J7F5K2_CRIGR", "mass": { "chemical_mass": 46759.0, "monoisotopic_mass": 46759.0 }, "refseq": { "ac": "XP_007644846", "name": "RNA-binding motif, single-stranded-interacting protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644846" }, "gene_names": [ { "name": "Rbms2", "type": "recommended", "evidence": [ { "id": "A0A9J7F5K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K2" } ] }, { "name": "Rbms2", "type": "synonym", "evidence": [ { "id": "XP_007644846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644846" } ] } ], "protein_names": [ { "name": "RNA-binding motif, single-stranded-interacting protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007644846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644846" }, { "id": "A0A9J7F5K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614217.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007644846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644846" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rbms2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K2", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5K2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5K2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12471", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12471", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12474", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12474", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763596", "url": "https://www.ncbi.nlm.nih.gov/gene/100763596", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763596", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763596", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PNASWMH", "url": "https://omabrowser.org/oma/group/PNASWMH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N0V5", "url": "https://www.orthodb.org/?gene=A0A8C2N0V5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F3M0", "url": "https://www.orthodb.org/?gene=A0A9J7F3M0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F5K2", "url": "https://www.orthodb.org/?gene=A0A9J7F5K2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F6K4", "url": "https://www.orthodb.org/?gene=A0A9J7F6K4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007644846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644846", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0V5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3M0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3M0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6K4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPRNSTPNSSSGSNGHDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVTAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALPNGFYPTPYNIAHSRVLAQAALSPYLPSPVSSYQRLTQPSLQVPSPSWMQHQSYLMQPSVSVQKWADKETTGCKEKPRALMTGYVGGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPTAAAIQGAYIPQYPPGPSSNVSVEESSGQQNQVAVETPSDHGVYPFQFSK", "length": 433, "header": "tr|A0A9J7F5K2-1|A0A9J7F5K2_CRIGR Isoform 1 of RNA-binding motif, single-stranded-interacting protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbms2 PE=4 SV=1 CANONICAL=A0A9J7F5K2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0V5/entry", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPRNSTPNSSSGSNGHDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVTAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALPNGFYPTPYNIAHSRVLAQAALSPYLPSPVSSYQGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPTAAAIQGAYIPQYPPGPSSNVSVEESSGQQNQVAVETPSDHGVYPFQFSK", "length": 381, "header": "tr|A0A8C2N0V5-1|A0A9J7F5K2_CRIGR Computationally mapped isoform of RNA-binding motif, single-stranded-interacting protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbms2 PE=4 SV=1 CANONICAL=A0A9J7F5K2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3M0/entry", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPRNSTPNSSSGSNGHDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVTAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALPNGFYPTPYNIAHSRVLAQAALSPYLPSPVSSYQRLTQPSLQVPSPSWMQHQSYLMQPSGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPTAAAIQGAYIPQYPPGPSSNVSVEESSGQQNQVAVETPSDHGVYPFQFSK", "length": 406, "header": "tr|A0A9J7F3M0-1|A0A9J7F5K2_CRIGR Computationally mapped isoform of RNA-binding motif, single-stranded-interacting protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbms2 PE=4 SV=1 CANONICAL=A0A9J7F5K2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K2/entry", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPRNSTPNSSSGSNGHDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVTAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALPNGFYPTPYNIAHSRVLAQAALSPYLPSPVSSYQRLTQPSLQVPSPSWMQHQSYLMQPSVSVQKWADKETTGCKEKPRALMTGYVGGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPTAAAIQGAYIPQYPPGPSSNVSVEESSGQQNQVAVETPSDHGVYPFQFSK", "length": 433, "header": "tr|A0A9J7F5K2-1|A0A9J7F5K2_CRIGR Isoform 1 of RNA-binding motif, single-stranded-interacting protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rbms2 PE=4 SV=1 CANONICAL=A0A9J7F5K2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K4/entry", "sequence": { "sequence": "MAPPSPRNSTPNSSSGSNGHDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVTAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALPNGFYPTPYNIAHSRVLAQAALSPYLPSPVSSYQRLTQPSLQVPSPSWMQHQSYLMQPSVSVQKWADKETTGCKEKPRALMTGYVGGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPTAAAIQGAYIPQYPPGPSSNVSVEESSGQQNQVAVETPSDHGVYPFQFSK", "length": 403, "header": "tr|A0A9J7F6K4-1|A0A9J7F6K4_CRIGR Computationally mapped isoform of RNA-binding motif, single-stranded-interacting protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rbms2 PE=4 SV=1 CANONICAL=A0A9J7F5K2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0V5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0V5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0V5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0V5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763596", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763596", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYJ7-1", "protein_name": "RNA binding motif, single stranded interacting protein 2", "gene_name": "Rbms2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKLYVAQQMAPPSPRNGTPNSSSGSGGNDQLSKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTTGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALQNGFYTAPYSLAHSRMLAQSALAPYLPSPVSSYQRVTQTSPVQVPNTSWMQQQSYLMQPSGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPAAAAMQGTYISQYPAVPSSSVSVEESNGQQSQLAVEPPSDHGVYPFQFSK", "length": 405 }, "evidence": [ { "id": "A0A9J7F5K2", "url": "https://omabrowser.org/oma/group/A0A9J7F5K2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A4X1W8B8-1", "protein_name": "RNA binding motif single stranded interacting protein 2", "gene_name": "RBMS2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPSNSTPNSSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGLALTYDPTTALQNGFYPAPYNITPNRMLSQSALSPYLPSPVSSYQRVTQTSPLQVPNPSWMHHQSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSMGTYMPAAAAVQGAYISQFTPVPSSSVSLEESGGQQSQVTAEAPSDHGVYSFQFNK", "length": 407 }, "evidence": [ { "id": "A0A9J7F5K2", "url": "https://omabrowser.org/oma/group/A0A9J7F5K2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q15434-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2", "gene_name": "RBMS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAAAMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK", "length": 407 }, "evidence": [ { "id": "A0A9J7F5K2", "url": "https://omabrowser.org/oma/group/A0A9J7F5K2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3ZC34-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2", "gene_name": "RBMS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPSSSTPNSSSGSTAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPSTALQNGFYPAPYNLAPNRMLTQSALSPYLPSPMTSYQRVTQTSPLQAPSPSWMHHQSYLMQPSGSVLTPGMDHPISLQPASMVGPLTQQLGHLSLSSTGTYVPTAAAMQGAYLSQYTPVPSSSVSVEESGSQQSQVPVDAPSEHGVYSFQFNK", "length": 407 }, "evidence": [ { "id": "A0A9J7F5K2", "url": "https://omabrowser.org/oma/group/A0A9J7F5K2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VC70-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2", "gene_name": "Rbms2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.ncbi.nlm.nih.gov/protein/XP_003506630" }, "gene_names": [ { "name": "Nap1l1", "type": "recommended", "evidence": [ { "id": "A0A9J7F5X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8" } ] }, { "name": "Nap1l1", "type": "synonym", "evidence": [ { "id": "XP_003506630", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506630" } ] } ], "protein_names": [ { "name": "Nucleosome assembly protein 1-like 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F5X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8/entry#names_and_taxonomy" } ] }, { "name": "nucleosome assembly protein 1-like 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003506630", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506630" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 767 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614260.1) and transcript sequences (IACG01063774.1 and IACG01132063.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506630", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506630" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nap1l1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8", "locus": {} } ], "crossref": [ { "id": "100763316", "url": "https://www.ncbi.nlm.nih.gov/gene/100763316", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002164", "database": "InterPro", "categories": [ "Protein Classification" ] 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0U5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Z9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADIDNKEQSELDQDLDDVEEVEEEEMGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEEEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 391, "header": "tr|A0A9J7F5X8-1|A0A9J7F5X8_CRIGR Isoform 1 of Nucleosome assembly protein 1-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nap1l1 PE=3 SV=1 CANONICAL=A0A9J7F5X8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F0U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0U5/entry", "sequence": { "sequence": "MADIDNKEQSELDQDLDDVEEVEEEEMGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEEEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEGYQLFEEVKSCSKLFQRWLQ", "length": 383, "header": "tr|A0A9J7F0U5-1|A0A9J7F5X8_CRIGR Computationally mapped isoform of Nucleosome assembly protein 1-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nap1l1 PE=3 SV=1 CANONICAL=A0A9J7F5X8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8/entry", "sequence": { "sequence": "MADIDNKEQSELDQDLDDVEEVEEEEMGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEEEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 391, "header": "tr|A0A9J7F5X8-1|A0A9J7F5X8_CRIGR Isoform 1 of Nucleosome assembly protein 1-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nap1l1 PE=3 SV=1 CANONICAL=A0A9J7F5X8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z9/entry", "sequence": { "sequence": "MADIDNLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEEEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 328, "header": "tr|A0A9J7F5Z9-1|A0A9J7F5Z9_CRIGR Computationally mapped isoform of Nucleosome assembly protein 1-like 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nap1l1 PE=3 SV=1 CANONICAL=A0A9J7F5X8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0U5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F0U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0U5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763316", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763316", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nucleosome assembly", "id": "GO:0006334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006334", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5X8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 267, "end_pos": 269 }, { "start_pos": 294, "end_pos": 296 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { 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"authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F653-1", "uniprot_ac": "A0A9J7F653", "uniprot_id": "A0A9J7F653_CRIGR", "mass": { "chemical_mass": 162482.0, "monoisotopic_mass": 162482.0 }, "refseq": { "ac": "XP_027248400", "name": "UHRF1-binding protein 1-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248400" }, "gene_names": [ { "name": "Uhrf1bp1l", "type": "recommended", "evidence": [ { "id": "A0A9J7F653", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F653" } ] }, { "name": "Uhrf1bp1l", "type": "synonym", "evidence": [ { "id": "XP_027248400", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248400" } ] } ], "protein_names": [ { "name": "UHRF1-binding protein 1-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027248400", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248400" }, { "id": "A0A9J7F653", "database": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248400", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248400" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F653", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F653" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Uhrf1bp1l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F653", "locus": {} } ], "crossref": [ { "id": "100764679", "url": "https://www.ncbi.nlm.nih.gov/gene/100764679", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026728", "database": "InterPro", "categories": [ "Protein 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"length": 1407, "header": "tr|A0A9J7F132-1|A0A9J7F653_CRIGR Computationally mapped isoform of UHRF1-binding protein 1-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Uhrf1bp1l PE=4 SV=1 CANONICAL=A0A9J7F653-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F653-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F653/entry", "sequence": { "sequence": "MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSLDKVVMEMSTCEEPRAPNGPSPIATASGQSEYGFAEKVVEGITVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHADLKFTRVQDPQRGEVLTFKEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDDLLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVASSAQHVKTPQAANAPDLNDAIVKRFNDYDVKETSHHLVISHLDLHICDDIHTKEKESNRRISGGAMQLSFTQLTIDYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFEYNVEMLKQAMKNQHVGSPPKSPTHASPQHTQTEKGTPKATSVLLQPSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSPKSMISCNKKSLYLPQEMSAIYIEFTEYYYPDGKDFPIPSPNLYSQLNALQFTVDERSILWLNQFLLDLKQSLNQFMAVYKLNDNSKSDEHVDIRVDGLMLKFVIPSEMKEGCHQDQPHTVSIQSSEMTATNTRHCPNCRHSDLEALFQDFKDCDFFSKTYTRFPKSCDSFNLLHPIFQRHAHEQDTKMHEVYKGNIIPKLNKNTLKMSAATDVWAVYFSQFWIDYEGMKSGKGRPISFVDSFPLSIWICQPTRYAELQKELQTCDQVSLNTSQSESSDLAGRMKRKKLLKEYYSTESEPLTNGGQRPASETFLQFSSSSSDADVHVLVRVHKHVSMQINHYQYLLLLFIHESLVLLSDTLRKDVEAVTGSPASQTSICIGVLLRSAELALLLHPVDHSSTLRSPASESVSPLLPDYLPSENGGFLSSKRKQGGSSIHRIRNATLNHMSDNRSMSVDLSHVPLKDPLLFKSASDTNLQKGTSFLDYLSDKHLGKISEDESSGLVYKSGSGEVSHREDVSCTDSDSVLSYRDDSNRLSLNNSGNQNAPSNALAGKGSGPIESIFRAEDFLPEVPSVPENLEDSKEVPTARSLKSQPSLSVKPKERCPPTPASLCVPYKNMKRSTSQVSLDAISLDSMVLEEQLESDGSDSHVLLGKAIKRNSNTNCQSPAESVNTNANMQNCGEASPDAISTNSDGALESRDDLMSVVVFKITGINGEIDIRGEDTEICLQVNQVTPSQLGNISLRNYLGNRPVGSDQKAVIHPKSSPEISLRFESGPGAVIHSLLAEKNGFLQCHIENFSTEFLTSSLLNIQNFLEDETVATVMPMKIQVSNTKINLKDDSPRSSTVSLQPSPVTVHIDHLVVERNDDGSFHIRDSHMFNTGTDFQDDTNANHDSVVLTSGKCDVRKQHSVTQATQTSPEVPWPSQSVSCPERSLDFTREQLMEENESLKRELAQAKMALAEAHSARDALLHQMKRWPLSS", "length": 1455, "header": "tr|A0A9J7F653-1|A0A9J7F653_CRIGR Isoform 1 of UHRF1-binding protein 1-like isoform X1 OS=Cricetulus griseus OX=10029 GN=Uhrf1bp1l PE=4 SV=1 CANONICAL=A0A9J7F653-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1082, "start_aa": "Thr", "end_pos": 1082, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1082", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 279, "start_aa": "Thr", "end_pos": 279, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr279", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F132", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F132" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F132", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F132" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764679", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764679", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1013, "end_pos": 1015, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1215, "end_pos": 1217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1272, "end_pos": 1274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1420, "end_pos": 1422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 745, "end_pos": 747, "annotation": "n_glycosylation_sequon" }, { "start_pos": 916, "end_pos": 918, "annotation": "n_glycosylation_sequon" }, { "start_pos": 925, "end_pos": 927, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 279, 1082 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1013, "end_pos": 1015 }, { "start_pos": 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}, { "database": "UniProtKB", "id": "A0A9J7J5N3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5N3#function" }, { "database": "UniProtKB", "id": "A0A9J7J8K5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8K5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5T9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103160441", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5T9", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5T9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5T9", "database": "AlphaFoldDB", "categories": [] }, { "id": "103160441", "url": "https://www.ncbi.nlm.nih.gov/gene/103160441", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103160441", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160441", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23262", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF170", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF170", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8K5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8K5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCVPSCCQSSCCAPSCCQPSCCVPSCCQPSCCVPSCCQSSCCVPSCCAPAPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDAASPCCQQSSCEPSCCTSSPCQQSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 303, "header": "tr|A0A9J7F5T9-1|A0A9J7F5T9_CRIGR Isoform 1 of Keratin-associated protein 10-4-like isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F3F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F4/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPTPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDAASPCCQQSSCEPSCCTSSPCQQSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 248, "header": "tr|A0A9J7F3F4-1|A0A9J7F5T9_CRIGR Computationally mapped isoform of Keratin-associated protein 10-4-like isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5T9/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCVPSCCQSSCCAPSCCQPSCCVPSCCQPSCCVPSCCQSSCCVPSCCAPAPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDAASPCCQQSSCEPSCCTSSPCQQSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 303, "header": "tr|A0A9J7F5T9-1|A0A9J7F5T9_CRIGR Isoform 1 of Keratin-associated protein 10-4-like isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6W9/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCVPSCCQSSCCAPSCCQPSCCVPTPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 240, "header": "tr|A0A9J7F6W9-1|A0A9J7F6W9_CRIGR Computationally mapped isoform of Keratin-associated protein 10-3-like isoform X16 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=3 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8P5/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPTPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDAASPCCQQSSCEPSCCTSSPCQQSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 253, "header": "tr|A0A9J7F8P5-1|A0A9J7F8P5_CRIGR Computationally mapped isoform of Keratin-associated protein 10-1-like isoform X13 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T8/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCVPSCCQSSCCAPTPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDAASPCCQQSSCEPSCCTSSPCQQSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 268, "header": "tr|A0A9J7H8T8-1|A0A9J7H8T8_CRIGR Computationally mapped isoform of Keratin-associated protein 10-1-like isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X5/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCSSCCVPSCCAPAPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDAASPCCQQSSCEPSCCTSSPCQQSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 267, "header": "tr|A0A9J7H8X5-1|A0A9J7H8X5_CRIGR Computationally mapped isoform of Keratin-associated protein 10-1-like isoform X12 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J5N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5N3/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPTPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 215, "header": "tr|A0A9J7J5N3-1|A0A9J7J5N3_CRIGR Computationally mapped isoform of Keratin-associated protein 10-3-like isoform X17 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=3 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8K5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8K5/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCVPSCCQSSCCAPTPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 245, "header": "tr|A0A9J7J8K5-1|A0A9J7J8K5_CRIGR Computationally mapped isoform of Keratin-associated protein 10-9-like isoform X15 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDF3/entry", "sequence": { "sequence": "MATSTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCVPSCCHCCVPSCCAPAPCLTLICTPVSCVSSPCCQSACCTPSCCQQSSCQPSCCTCSPCQQSCCVPVCCKPVCCVPVCCGDAASPCCQQSSCEPSCCTSSPCQQSCCEPICCEPLVCEPVCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKCSC", "length": 271, "header": "tr|A0A9J7KDF3-1|A0A9J7KDF3_CRIGR Computationally mapped isoform of Keratin-associated protein 10-1-like isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC103160441 PE=4 SV=1 CANONICAL=A0A9J7F5T9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3F4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3F4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3F4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103160441", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160441", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5T9" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5T9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3G5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3G5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757010", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757010", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7U0" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7U0", "url": 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248417" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5F4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ikbip", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F4", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5F4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5F4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757532", "url": "https://www.ncbi.nlm.nih.gov/gene/100757532", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757532", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757532", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5F4", "url": "https://www.orthodb.org/?gene=A0A9J7F5F4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21734", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21734", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21734:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21734:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21734:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21734:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027248417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248417", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F3H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3H1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5F4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEVKSRKKPGPKGPAAEPEKLSDGRKNPEARGGAGWADPRTGLSLLSLAACLGLAWIVFQQTEKISKMENQYQLLQIESREFQGLQNKISLISDKLESTESILQEATASMALMTQFEQEVSGLQRSIHDIENSDEMLTQKMQNLNEKFQNITDFWKRTLAEMSDNTTIFKSEAKHIHSQVTMKINSAEQKMKLLTKRLKDLEDSTLRNIRTVSRQEEEDLLQVEAQLSSDTKAVEKLEEEQHSLLARDEDLTNKLSNYEPKVEECKAHLPAIENAIHSVLRVSQDLMGTEKKMEDLTMQMFNMEDDMLRAVSEIMEMQKTLEGIQYDNSILKMQNELVVLKGKVHDFIAYSSAKEKETLEKYNLENKGAGDH", "length": 373, "header": "tr|A0A9J7F5F4-1|A0A9J7F5F4_CRIGR Isoform 1 of Inhibitor of nuclear factor kappa-B kinase-interacting protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ikbip PE=4 SV=1 CANONICAL=A0A9J7F5F4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F3H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3H1/entry", "sequence": { "sequence": "MSEVKSRKKPGPKGPAAEPEKLSDGRKNPEARGGAGWADPRTGLSLLSLAACLGLAWIVFQQTEKISKMENQYQLLQIESREFQGLQNKISLISDKYQKCEALMEQLKAFQIMTHLKLLQEEVHEMKLWSSRITEKHGVLNNTVTSLSQDIMKVDQGTTSTAKDVGLKITSVKTDLRRISGLVTEVTSLTDSVQELENKVGKVETATVENIGDLLSSSIDRTAALRRTASENSRRINSVTKRLSELQGDFDKHSDRFLSLESDRAKVLKAVAFANDLKPKVYNLKKDFLRLEPLVDDLTLRIGRLGSDLIQREKEISFLKEKISNLTIVQAEIKYIKDEITRISD", "length": 345, "header": "tr|A0A9J7F3H1-1|A0A9J7F5F4_CRIGR Computationally mapped isoform of Inhibitor of nuclear factor kappa-B kinase-interacting protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ikbip PE=4 SV=1 CANONICAL=A0A9J7F5F4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F4/entry", "sequence": { "sequence": "MSEVKSRKKPGPKGPAAEPEKLSDGRKNPEARGGAGWADPRTGLSLLSLAACLGLAWIVFQQTEKISKMENQYQLLQIESREFQGLQNKISLISDKLESTESILQEATASMALMTQFEQEVSGLQRSIHDIENSDEMLTQKMQNLNEKFQNITDFWKRTLAEMSDNTTIFKSEAKHIHSQVTMKINSAEQKMKLLTKRLKDLEDSTLRNIRTVSRQEEEDLLQVEAQLSSDTKAVEKLEEEQHSLLARDEDLTNKLSNYEPKVEECKAHLPAIENAIHSVLRVSQDLMGTEKKMEDLTMQMFNMEDDMLRAVSEIMEMQKTLEGIQYDNSILKMQNELVVLKGKVHDFIAYSSAKEKETLEKYNLENKGAGDH", "length": 373, "header": "tr|A0A9J7F5F4-1|A0A9J7F5F4_CRIGR Isoform 1 of Inhibitor of nuclear factor kappa-B kinase-interacting protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Ikbip PE=4 SV=1 CANONICAL=A0A9J7F5F4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613716.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016829526.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016829526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829526" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8E4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam32a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8E4", "locus": {} } ], "crossref": [ { "id": "A0A9J7F8E4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F8E4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759796", "url": "https://www.ncbi.nlm.nih.gov/gene/100759796", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013865", "url": 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"database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F498", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F498", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F498-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F498-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8E4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9H7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8Y7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8Y7", "database": "UniProtKB", "categories": [ "Protein" ] }, { 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CANONICAL=A0A9J7F8E4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8E4/entry", "sequence": { "sequence": "MIGKLGGRRAEALRTNRKCGVPRAVAMEAYEQVQKGPLKLKGVAELGVTKRKKKKKDKDKAKLLEAMGTSKKSEEEKRRCLDKRTPAQAAFEKMQEKRKTTWRSCFSPPTCGSQGVNSGTLALQAILLVLVFILKWDPLISCCSLPVRGSEQMERILKKASKTHKQRVEDRKLLPVDHHRSSHSAAPFGQPGHQTTQLTSSNSHLKQG", "length": 208, "header": "tr|A0A9J7F8E4-1|A0A9J7F8E4_CRIGR Isoform 1 of Protein FAM32A OS=Cricetulus griseus OX=10029 GN=Fam32a PE=3 SV=1 CANONICAL=A0A9J7F8E4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H7/entry", "sequence": { "sequence": "MIGKLGGRRAEALRTNRKCGVPRAVAMEAYEQVQKGPLKLKGVAELGVTKRKKKKKDKDKAKLLEAMGTSKKSEEEKRRCLDKRTPAQAAFEKMQEKRKTTWRSCFSPPTCGSQGVNSGTLALQAILLVLVFILKWDPLISCCSLPVRGSEQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKVSWTK", "length": 191, "header": "tr|A0A9J7F9H7-1|A0A9J7F9H7_CRIGR Computationally mapped isoform of Protein FAM32A OS=Cricetulus griseus OX=10029 GN=Fam32a PE=3 SV=1 CANONICAL=A0A9J7F8E4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8Y7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8Y7/entry", "sequence": { "sequence": "MIGKLGGRRAEALRTNRKCGVPRAVAMEAYEQVQKGPLKLKGVAELGVTKRKKKKKDKDKAKLLEAMGTSKKSEEEKRRCLDKRTPAQAAFEKMQEKRQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKVSWTK", "length": 138, "header": "tr|A0A9J7J8Y7-1|A0A9J7J8Y7_CRIGR Computationally mapped isoform of Protein FAM32A OS=Cricetulus griseus OX=10029 GN=Fam32a PE=3 SV=1 CANONICAL=A0A9J7F8E4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F498", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F498" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F498", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F498" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759796", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759796", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8E4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F9E1-1", "uniprot_ac": "A0A9J7F9E1", "uniprot_id": "A0A9J7F9E1_CRIGR", "mass": { "chemical_mass": 26811.0, "monoisotopic_mass": 26811.0 }, "refseq": { "ac": "XP_027250762", "name": "uncharacterized protein LOC113830899 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250762" }, "gene_names": [ { "name": "LOC113830899", "type": "recommended", "evidence": [ { "id": "A0A9J7F9E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E1" } ] }, { "name": "LOC113830899", "type": "synonym", "evidence": [ { "id": "XP_027250762", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250762" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113830899 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7F9E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E1/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113830899 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027250762", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250762" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250762", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250762" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9E1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113830899", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E1", "locus": {} } ], "crossref": [ { "id": "A0A9J7F9E1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F9E1", "database": "AlphaFoldDB", "categories": [] }, { "id": "113830899", "url": "https://www.ncbi.nlm.nih.gov/gene/113830899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113830899", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113830899", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027250762", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250762", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F4D9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4D9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4D9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6R8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6R8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6R8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9E1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9L5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLSQPPVTTQAVLLKLPASALNYLTLHSRIPQFSQGPPMTLSRLQFLFASLLLQCFMMSPKLQEMGAAGRRCTPKDLPPVTYFLKSAFPKTSMLVLFKKGMALETIILPSLAATVVNVTNIYQEQFVCQAVCLFPSFLWKQSWRVKVLEGWVWATHPASDLENEPRDHWERSHSSSLLNAQQSSLRISQQPRSRGRKIVSSIQGKICLPADIRVTYFLQLGPTSFLSPPPARHPSRD", "length": 238, "header": "tr|A0A9J7F9E1-1|A0A9J7F9E1_CRIGR Isoform 1 of Uncharacterized protein LOC113830899 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113830899 PE=4 SV=1 CANONICAL=A0A9J7F9E1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4D9/entry", "sequence": { "sequence": "MVAEQDTDLQEMGAAGRRCTPKDLPPVTYFLKSAFPKTSMLVLFKKGMALETIILPSLAATVVNVTNIYQEQFVCQAVCLFPSFLWKQSWRVKVLEGWVWATHPASDLENEPRDHWERSHSSSLLNAQQSSLRISQQPRSRGRKIVSSIQGKICLPADIRVTYFLQLGPTSFLSPPPARHPSRD", "length": 184, "header": "tr|A0A9J7F4D9-1|A0A9J7F9E1_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113830899 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113830899 PE=4 SV=1 CANONICAL=A0A9J7F9E1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6R8/entry", "sequence": { "sequence": "MYLSQPPVTTQAVLLKLPASALNYLTLHSRIPQFSQGPPMTLSRLQFLFASLLLQCFMMSPKLQEMGAAGRRCTPKDLPPVTYFLKSAFPKTSMLVLFKKGMALETIILPSLAATVVNVTNIYQEQFVCQAVCLFPSFLWKQSWRVKVLEGWVWATHPASDLENEPRDHWERSHSSSLLNAQQSSLREQTSSGLCGQCTGP", "length": 201, "header": "tr|A0A9J7F6R8-1|A0A9J7F6R8_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113830899 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC113830899 PE=4 SV=1 CANONICAL=A0A9J7F9E1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I1/entry", "sequence": { "sequence": "MYLSQPPVTTQAVLLKLPASALNYLTLHSRIPQFSQGPPMTLSRLQFLFASLLLQCFMMSPKLQEMGAAGRRCTPKDLPPVTYFLKSAFPKTSMLVLFKKGMALETIILPSLAATVVNVTNIYQEQFVCQAVCLFPSFLWKQSWRVKVLEGWVWATHPASDLENEPRDHWERSHSSSLLNAQQSSLTCIIHQRQSKPTVLLTSDPVEKTK", "length": 210, "header": "tr|A0A9J7F8I1-1|A0A9J7F8I1_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113830899 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC113830899 PE=4 SV=1 CANONICAL=A0A9J7F9E1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8Q0/entry", "sequence": { "sequence": "MYLSQPPVTTQAVLLKLPASALNYLTLHSRIPQFSQGPPMTLSRLQFLFASLLLQCFMMSPKLQEMGAAGRRCTPKDLPPVTYFLKSAFPKTSMLVLFKKGMALETIILPSLAATVVNVTNIYQEQFVCQAVCLFPSFLWKQSWRVKVLEGWVWATHPASDLENEPRDHWERSHSSSLLNAQQSSLREQTSSGLCGQCTACIIHQRQSKPTVLLTSDPVEKTK", "length": 223, "header": "tr|A0A9J7F8Q0-1|A0A9J7F8Q0_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113830899 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC113830899 PE=4 SV=1 CANONICAL=A0A9J7F9E1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E1/entry", "sequence": { "sequence": "MYLSQPPVTTQAVLLKLPASALNYLTLHSRIPQFSQGPPMTLSRLQFLFASLLLQCFMMSPKLQEMGAAGRRCTPKDLPPVTYFLKSAFPKTSMLVLFKKGMALETIILPSLAATVVNVTNIYQEQFVCQAVCLFPSFLWKQSWRVKVLEGWVWATHPASDLENEPRDHWERSHSSSLLNAQQSSLRISQQPRSRGRKIVSSIQGKICLPADIRVTYFLQLGPTSFLSPPPARHPSRD", "length": 238, "header": "tr|A0A9J7F9E1-1|A0A9J7F9E1_CRIGR Isoform 1 of Uncharacterized protein LOC113830899 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113830899 PE=4 SV=1 CANONICAL=A0A9J7F9E1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9L5/entry", "sequence": { "sequence": "MYLSQQEESSLMVAEQDTDLQEMGAAGRRCTPKDLPPVTYFLKSAFPKTSMLVLFKKGMALETIILPSLAATVVNVTNIYQEQFVCQAVCLFPSFLWKQSWRVKVLEGWVWATHPASDLENEPRDHWERSHSSSLLNAQQSSLRISQQPRSRGRKIVSSIQGKICLPADIRVTYFLQLGPTSFLSPPPARHPSRD", "length": 195, "header": "tr|A0A9J7F9L5-1|A0A9J7F9L5_CRIGR 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"https://www.uniprot.org/uniprotkb/A0A9J7HC00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTSSDGSTVSGDGHKLTFGQRLVNHLLGLAPPNQRYSVPAEYLCDSEMRGSPQSSQSHLKACRAHSWGNEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5093, "header": "tr|A0A9J7F5C9-1|A0A9J7F5C9_CRIGR Isoform 1 of Transmembrane protein KIAA1109 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4R0/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5005, "header": "tr|A0A9J7F4R0-1|A0A9J7F5C9_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5C9/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTSSDGSTVSGDGHKLTFGQRLVNHLLGLAPPNQRYSVPAEYLCDSEMRGSPQSSQSHLKACRAHSWGNEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5093, "header": "tr|A0A9J7F5C9-1|A0A9J7F5C9_CRIGR Isoform 1 of Transmembrane protein KIAA1109 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H977-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H977/entry", "sequence": { "sequence": "MNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 4640, "header": "tr|A0A9J7H977-1|A0A9J7H977_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD7/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 4991, "header": "tr|A0A9J7HBD7-1|A0A9J7HBD7_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC00-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC00/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5025, "header": "tr|A0A9J7HC00-1|A0A9J7HC00_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC81/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5009, "header": "tr|A0A9J7HC81-1|A0A9J7HC81_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC8/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISEHL", "length": 4268, "header": "tr|A0A9J7HDC8-1|A0A9J7HDC8_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAH5/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5026, "header": "tr|A0A9J7JAH5-1|A0A9J7JAH5_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEH7/entry", "sequence": { "sequence": "MDQRKNDSIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKHGYIHIGSFSFSVLSGKVMVREIYYITEDMSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSDLYGRLQELFGLEPTIIPAKKDDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEESIEGEISSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDNAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTRFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAPETGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTINYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPAQKTSERVVSSPSTSPRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMDNDKKENESSAKSIHPLALRPWDITVLVNLYKVHGRLPVHGSTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFISDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQTGNLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIICQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAVRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLETHDARTKRLWFLWPEDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEIPKTVDGNMNGMKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEENSSSSAAQPLLAGEKESPSSVADDHLVQKDFLHGTKRDDGQASVPTEISGTSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQMQQIDYSRGSIYHSVEGPLTVHGESITDPRTLPFKTHPSQASFVSALGGEDEVIEHLYIVEGEKTREIEQITSQQPVMSCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSSSNTPYTPLDKKIVDNTDDETLTEEWTLDQPVAQTKTTAIVEVKGTVDVVLTPLVAEALDRYIEAMVHCASTRHPAAIVDDLHTKVLREAVQNSKTTFSENLSPKQDVRGTKTEHSVIGTTNQGQIQTNVTTKQDNVTIKGLQANVSIPKVNLCLLQASVEESPAAVPSRSVTHVSLVALCFDRIATQVRMNRGVVEETSNNVDPSKTSNFDRYVHASKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFTFVDETDQQAIPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNSFGIMGKTSVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDINGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIDDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPPAAMDQEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRAGMPVKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNTVATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDTMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKDRKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTNALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRANNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCRVVFENEQDNNSLTKTQRKRSLVTSEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPMKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAIDYRRQGASSSQPGEPRGRKIMKRLVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWGLGYKPSYNRSKSISASGRPPLKRMERASSRIGETDELPEIRVDAASPGPRVTFNIQDTLKNTVWGSSPQSSSPGEGYFQFPEETELDLLSVTIEGPSHYSSNSEGSCSVFSSPKTTGGFSPSVPFQSEDSRRDDSLSSTSEDSEKDEKDEDRERERFYIYRKASHTSRKKATGFAAVHQLLTERWPTTPVNRSISGPPTERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDNAASPSSPPLPCTVQSKTNTLLPPQPPPIPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPIERNYTVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELDTLGTTYPAETLSPGGNAPQSGTKTSAGKAGIPGSSGLGSPLGRSRHSSSQSDLTGSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKSTVSGLTSGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGTSFFESQSVSKSTSKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTVNLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWDQPSQSASFTHMPQSPNVFNEHMTNSSMSPGTAAQSLKSPASIRSRSVSDSSVPRRDSISKTSTPVNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTESRVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTMTNNLEKNSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNMENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLEFKSIHVQEPQEPSLQDANLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSSIIIHDDNSSDRDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5025, "header": "tr|A0A9J7KEH7-1|A0A9J7KEH7_CRIGR Computationally mapped isoform of Transmembrane protein KIAA1109 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100752965 PE=4 SV=1 CANONICAL=A0A9J7F5C9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2605, "start_aa": "Thr", "end_pos": 2605, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2605", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4R0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4R0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4R0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4R0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752965", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752965", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5C9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5C9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "synaptic vesicle endocytosis", "id": "GO:0048488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048488", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5C9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5C9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1027, "end_pos": 1029, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1204, "end_pos": 1206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1236, "end_pos": 1238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1514, "end_pos": 1516, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1679, "end_pos": 1681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1707, "end_pos": 1709, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1714, "end_pos": 1716, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1723, "end_pos": 1725, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1899, "end_pos": 1901, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1934, "end_pos": 1936, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1935, "end_pos": 1937, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2076, "end_pos": 2078, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2117, "end_pos": 2119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2534, "end_pos": 2536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2555, "end_pos": 2557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2753, "end_pos": 2755, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2784, "end_pos": 2786, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2955, "end_pos": 2957, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3101, "end_pos": 3103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3353, "end_pos": 3355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3682, "end_pos": 3684, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3865, "end_pos": 3867, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3984, "end_pos": 3986, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4089, "end_pos": 4091, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4330, "end_pos": 4332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4433, "end_pos": 4435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4475, "end_pos": 4477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4506, "end_pos": 4508, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4513, "end_pos": 4515, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4871, "end_pos": 4873, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4877, "end_pos": 4879, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4990, "end_pos": 4992, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" }, { "start_pos": 793, "end_pos": 795, "annotation": "n_glycosylation_sequon" }, { "start_pos": 886, "end_pos": 888, "annotation": "n_glycosylation_sequon" }, { "start_pos": 922, "end_pos": 924, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F5C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5C9" }, { "id": "SM01220", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01220" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bridge-like lipid transfer protein family member 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 4474, "end_pos": 5078, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2605 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1027, "end_pos": 1029 }, { "start_pos": 1204, "end_pos": 1206 }, { "start_pos": 1236, "end_pos": 1238 }, { "start_pos": 140, "end_pos": 142 }, { "start_pos": 1514, "end_pos": 1516 }, { "start_pos": 1679, "end_pos": 1681 }, { "start_pos": 1707, "end_pos": 1709 }, { "start_pos": 1714, "end_pos": 1716 }, { "start_pos": 1723, "end_pos": 1725 }, { "start_pos": 1899, "end_pos": 1901 }, { "start_pos": 1934, "end_pos": 1936 }, { "start_pos": 1935, "end_pos": 1937 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 2076, "end_pos": 2078 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"start_pos": 886, "end_pos": 888 }, { "start_pos": 922, "end_pos": 924 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F537-1", "uniprot_ac": "A0A9J7F537", "uniprot_id": "A0A9J7F537_CRIGR", "mass": { "chemical_mass": 105973.0, "monoisotopic_mass": 105973.0 }, "refseq": { "ac": "XP_027240339", "name": "WD repeat-containing protein 47 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240339" }, "gene_names": [ { "name": "Wdr47", "type": "recommended", "evidence": [ { "id": "A0A9J7F537", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537" } ] }, { "name": "Wdr47", "type": "synonym", "evidence": [ { "id": "XP_027240339", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240339" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 47 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027240339", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240339" }, { "id": "A0A9J7F537", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615469.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027240339", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240339" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F537", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537", "locus": {} } ], "crossref": [ { "id": "A0A9J7F537", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F537", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766348", "url": "https://www.ncbi.nlm.nih.gov/gene/100766348", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054532", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054532", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766348", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766348", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F537", "url": "https://www.orthodb.org/?gene=A0A9J7F537", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F976", "url": "https://www.orthodb.org/?gene=A0A9J7F976", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J6D3", "url": "https://www.orthodb.org/?gene=A0A9J7J6D3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19863", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19863", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19863:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19863:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17814", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17814", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027240339", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240339", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F537", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F537-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7H2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7H2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7H2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8C1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8C1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F976", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F976", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F976-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F976-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9E5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAC0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9E2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9E2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9E2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 952, "header": "tr|A0A9J7F537-1|A0A9J7F537_CRIGR Isoform 1 of WD repeat-containing protein 47 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F537-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537/entry", "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 952, "header": "tr|A0A9J7F537-1|A0A9J7F537_CRIGR Isoform 1 of WD repeat-containing protein 47 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7H2/entry", "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 943, "header": "tr|A0A9J7F7H2-1|A0A9J7F7H2_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X6 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8C1/entry", "sequence": { "sequence": "MSAEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 829, "header": "tr|A0A9J7F8C1-1|A0A9J7F8C1_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X9 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F976-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F976/entry", "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 944, "header": "tr|A0A9J7F976-1|A0A9J7F976_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X5 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9E5/entry", "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 945, "header": "tr|A0A9J7F9E5-1|A0A9J7F9E5_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X4 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FA26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA26/entry", "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 951, "header": "tr|A0A9J7FA26-1|A0A9J7FA26_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FAC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAC0/entry", "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 942, "header": "tr|A0A9J7FAC0-1|A0A9J7FAC0_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X7 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6D3/entry", "sequence": { "sequence": "MSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 822, "header": "tr|A0A9J7J6D3-1|A0A9J7J6D3_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X10 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9E2/entry", "sequence": { "sequence": "MTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATVSGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 929, "header": "tr|A0A9J7J9E2-1|A0A9J7J9E2_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X8 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV4/entry", "sequence": { "sequence": "MFSSGVLRCCVHVVLRYTSRLSNMTAEETVNIKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSAFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEPTCQGSGFEKEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPVLNQQCTGNKNNGSNSSSVTGFSTPPQDSSQRLIHDTSNIHTSTPRNPGSTNLIPFLEESPCGSQNSSEHSVIKPSLGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPDKIDPSAHDMPKPPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG", "length": 950, "header": "tr|A0A9J7JCV4-1|A0A9J7JCV4_CRIGR Computationally mapped isoform of WD repeat-containing protein 47 isoform X3 OS=Cricetulus griseus OX=10029 GN=Wdr47 PE=4 SV=1 CANONICAL=A0A9J7F537-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F537", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F537", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766348", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766348", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 508, "end_pos": 510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 541, "end_pos": 543, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 595, "end_pos": 597, "annotation": "n_glycosylation_sequon" }, { "start_pos": 612, "end_pos": 614, "annotation": "n_glycosylation_sequon" }, { "start_pos": 727, "end_pos": 729, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F537", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F537" }, { "id": "PS50897", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50897" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CTLH", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 125, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 23, "end_pos": 25 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 385, "end_pos": 387 }, { "start_pos": 501, "end_pos": 503 }, { "start_pos": 508, "end_pos": 510 }, { "start_pos": 541, "end_pos": 543 }, { "start_pos": 544, "end_pos": 546 }, { "start_pos": 595, "end_pos": 597 }, { "start_pos": 612, "end_pos": 614 }, { "start_pos": 727, "end_pos": 729 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F563-1", "uniprot_ac": "A0A9J7F563", "uniprot_id": "A0A9J7F563_CRIGR", "mass": { "chemical_mass": 121020.0, "monoisotopic_mass": 121020.0 }, "refseq": { "ac": "XP_027250744", "name": "mastermind-like protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250744" }, "gene_names": [ { "name": "Maml3", "type": "recommended", "evidence": [ { "id": "A0A9J7F563", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ] }, { "name": "Maml3", "type": "synonym", "evidence": [ { "id": "XP_027250744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250744" } ] } ], "protein_names": [ { "name": "Mastermind-like protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F563", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563/entry#names_and_taxonomy" } ] }, { "name": "mastermind-like protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027250744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250744" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250744", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250744" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Maml3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563", "locus": {} } ], "crossref": [ { "id": "A0A9J7F563", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F563", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767462", "url": "https://www.ncbi.nlm.nih.gov/gene/100767462", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767462", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767462", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F563", "url": "https://www.orthodb.org/?gene=A0A9J7F563", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F903", "url": "https://www.orthodb.org/?gene=A0A9J7F903", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15692", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15692", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15692:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15692:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09596", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09596", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20801", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20801", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250744", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250744", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F563-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F903", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F903", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F903-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F903-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDFAAPAAAANGSSICINSSLSSNLGGAGIGVNTPNSTPAAPSGNHPAAGGCGGSGGPGGGSVAVPKHSTVVERLRQRIEGCRRHHVNCENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGTGKQQHPSKAQQDAEAASAEQRNHTLIMLQETVKRKLEGARSPLNGEQQNGACDGSFSPTSKRIRKDLPTGMEAINNLPNNMPLPSASPCHQLDLKPSLPLQNSAAHTPGLLEDLGKNGRLPEIKLPVNGCGDLEDSFAILQSKDLKQEPLDDPACIDTSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLFNEDFEEKKDPEFSQTTMETPLSHESASVKSDASHSPFAHVSMGSPQARPSSSGPPFATVSTATSLPSVANTPVAPNPASSPANCAVQSPQTPTQAHTPGQAPARPGNGYLLNPISVTVSGSGSGSVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQPHSNQTSSWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNTIVPAMANSLQKTTMNNYLPSNHMNMISQQPNNLGTNSLNKQHNMLTYGNTKPLTHFNADLSPRMTPPMANPNKNPLMPYIQQQPPQPQPQPQPQPPQQQQPPPQLQAPRAHLSEDQKRMLLIKQKGVMNPPMAYAALPAHSQEQHAVGLPRTTGPMQNSVPPGSSSMVSGASPGGLGFLGGQPQAAIMKQMLMDQRAQLMEHQKQQFLREQRQQQQQQQQILAEQQLQQSHLPRQHLQQQRTPYPVQQVNQFQGSPQDIAAVRNQAALQSMRTSRLMAQNAGMMGMGPSQNPGTMATAAAQSEIGLSPYSAPPTSQPGMYNMSTGMTQMLQHPNQSGMSIPHNQAQGPRQPASGQGVGMVSGFGQSMLVNSALSQQHQQLKGPVGQALPRPQGPPRLQSVMGTVQQGAQSWQQRGLQGVPGRTSGELGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVMDANTGTVRTLNPAAMSRQMMPPLAGQQGTSQVRPLVMSGLSQGVPGMAAFSQPPAQQQIAGGSFAASNQGQAYERNPAQDMSYNYSGESTGASFPGLPDSTDLVDSIIKSGPGDEWMQELDELFGNP", "length": 1130, "header": "tr|A0A9J7F563-1|A0A9J7F563_CRIGR Isoform 1 of Mastermind-like protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Maml3 PE=3 SV=1 CANONICAL=A0A9J7F563-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F563-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563/entry", "sequence": { "sequence": "MGDFAAPAAAANGSSICINSSLSSNLGGAGIGVNTPNSTPAAPSGNHPAAGGCGGSGGPGGGSVAVPKHSTVVERLRQRIEGCRRHHVNCENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGTGKQQHPSKAQQDAEAASAEQRNHTLIMLQETVKRKLEGARSPLNGEQQNGACDGSFSPTSKRIRKDLPTGMEAINNLPNNMPLPSASPCHQLDLKPSLPLQNSAAHTPGLLEDLGKNGRLPEIKLPVNGCGDLEDSFAILQSKDLKQEPLDDPACIDTSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLFNEDFEEKKDPEFSQTTMETPLSHESASVKSDASHSPFAHVSMGSPQARPSSSGPPFATVSTATSLPSVANTPVAPNPASSPANCAVQSPQTPTQAHTPGQAPARPGNGYLLNPISVTVSGSGSGSVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQPHSNQTSSWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNTIVPAMANSLQKTTMNNYLPSNHMNMISQQPNNLGTNSLNKQHNMLTYGNTKPLTHFNADLSPRMTPPMANPNKNPLMPYIQQQPPQPQPQPQPQPPQQQQPPPQLQAPRAHLSEDQKRMLLIKQKGVMNPPMAYAALPAHSQEQHAVGLPRTTGPMQNSVPPGSSSMVSGASPGGLGFLGGQPQAAIMKQMLMDQRAQLMEHQKQQFLREQRQQQQQQQQILAEQQLQQSHLPRQHLQQQRTPYPVQQVNQFQGSPQDIAAVRNQAALQSMRTSRLMAQNAGMMGMGPSQNPGTMATAAAQSEIGLSPYSAPPTSQPGMYNMSTGMTQMLQHPNQSGMSIPHNQAQGPRQPASGQGVGMVSGFGQSMLVNSALSQQHQQLKGPVGQALPRPQGPPRLQSVMGTVQQGAQSWQQRGLQGVPGRTSGELGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVMDANTGTVRTLNPAAMSRQMMPPLAGQQGTSQVRPLVMSGLSQGVPGMAAFSQPPAQQQIAGGSFAASNQGQAYERNPAQDMSYNYSGESTGASFPGLPDSTDLVDSIIKSGPGDEWMQELDELFGNP", "length": 1130, "header": "tr|A0A9J7F563-1|A0A9J7F563_CRIGR Isoform 1 of Mastermind-like protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Maml3 PE=3 SV=1 CANONICAL=A0A9J7F563-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F903-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F903/entry", "sequence": { "sequence": "MEAINNLPNNMPLPSASPCHQLDLKPSLPLQNSAAHTPGLLEDLGKNGRLPEIKLPVNGCGDLEDSFAILQSKDLKQEPLDDPACIDTSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLFNEDFEEKKDPEFSQTTMETPLSHESASVKSDASHSPFAHVSMGSPQARPSSSGPPFATVSTATSLPSVANTPVAPNPASSPANCAVQSPQTPTQAHTPGQAPARPGNGYLLNPISVTVSGSGSGSVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQPHSNQTSSWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNTIVPAMANSLQKTTMNNYLPSNHMNMISQQPNNLGTNSLNKQHNMLTYGNTKPLTHFNADLSPRMTPPMANPNKNPLMPYIQQQPPQPQPQPQPQPPQQQQPPPQLQAPRAHLSEDQKRMLLIKQKGVMNPPMAYAALPAHSQEQHAVGLPRTTGPMQNSVPPGSSSMVSGASPGGLGFLGGQPQAAIMKQMLMDQRAQLMEHQKQQFLREQRQQQQQQQQILAEQQLQQSHLPRQHLQQQRTPYPVQQVNQFQGSPQDIAAVRNQAALQSMRTSRLMAQNAGMMGMGPSQNPGTMATAAAQSEIGLSPYSAPPTSQPGMYNMSTGMTQMLQHPNQSGMSIPHNQAQGPRQPASGQGVGMVSGFGQSMLVNSALSQQHQQLKGPVGQALPRPQGPPRLQSVMGTVQQGAQSWQQRGLQGVPGRTSGELGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVMDANTGTVRTLNPAAMSRQMMPPLAGQQGTSQVRPLVMSGLSQGVPGMAAFSQPPAQQQIAGGSFAASNQGQAYERNPAQDMSYNYSGESTGASFPGLPDSTDLVDSIIKSGPGDEWMQELDELFGNP", "length": 932, "header": "tr|A0A9J7F903-1|A0A9J7F903_CRIGR Computationally mapped isoform of Mastermind-like protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Maml3 PE=4 SV=1 CANONICAL=A0A9J7F563-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 39, "start_aa": "Thr", "end_pos": 39, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr39", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767462", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767462", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "pmid": "" }, { "name": "positive regulation of transcription of Notch receptor target", "id": "GO:0007221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007221", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F563", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1087, "end_pos": 1089, "annotation": "n_glycosylation_sequon" }, { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 865, "end_pos": 867, "annotation": "n_glycosylation_sequon" }, { "start_pos": 878, "end_pos": 880, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F563", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F563" }, { "id": "SM01275", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01275" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neurogenic mastermind-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 67, "end_pos": 126, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 39 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1087, "end_pos": 1089 }, { "start_pos": 12, "end_pos": 14 }, { "start_pos": 150, "end_pos": 152 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 865, "end_pos": 867 }, { "start_pos": 878, "end_pos": 880 } ] }, "class_list": [], "section_stats": [ { "table_id": 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"recommended", "evidence": [ { "id": "A0A9J7F592", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592" } ] }, { "name": "Lrrc31", "type": "synonym", "evidence": [ { "id": "XP_027247687", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247687" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 31", "type": "synonym", "evidence": [ { "id": "XP_027247687", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247687" }, { "id": "A0A9J7F592", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_027247687", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247687" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F592", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592", "locus": {} } ], "crossref": [ { "id": "100770060", "url": "https://www.ncbi.nlm.nih.gov/gene/100770060", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042419", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042419", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770060", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F592", "url": "https://www.orthodb.org/?gene=A0A9J7F592", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24109", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24109", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24109:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24109:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247687", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247687", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F592", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F592-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LGLEMEXESDMKESDWILKKLCRKAADMSLDLNSCGLTAADEKETDLEELDVSWNDFVSGTLHLFIEQMQQVHKLKVLRLSSCGLTSEDVQTLGDALEMIPELEELSLSWNSKVGGKLPQVLRTFQKGSKIQTLELVDCALTSQDGEFVGHLLPKLHSLEVFDLSINRNIGSSLDIIAQGLKSTVGLKVLKLHSCGLSPKSVRLLDGAFASLDVLRTLDLSCNKDLGGGFEDAPAQLALLKHLEVLDLHQCSLTADDVASLTQIIPLLSNLQELDLSSNRKVGVSSETLLSRLRFVPALKSLFINRCALESETFTALAEATVYLPSLEMLNLSWNKCVGGNLELLLQTLKLSRSLRVLRLSSCALVTEDVVLLASVIWTGHLAELQKLDLSYNDSICDTGWAIFCQNLCFLKKLTELDISLPPSSSRGCGRWFRHLLCAVTKLPVVTEIGMRRWVIPASKEEELECLTHKHRRGIQFDHGGFQRAAS", "length": 487, "header": "tr|A0A9J7F592-1|A0A9J7F592_CRIGR Isoform 1 of LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 31 OS=Cricetulus griseus OX=10029 GN=Lrrc31 PE=4 SV=1 CANONICAL=A0A9J7F592-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F592-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592/entry", "sequence": { "sequence": "LGLEMEXESDMKESDWILKKLCRKAADMSLDLNSCGLTAADEKETDLEELDVSWNDFVSGTLHLFIEQMQQVHKLKVLRLSSCGLTSEDVQTLGDALEMIPELEELSLSWNSKVGGKLPQVLRTFQKGSKIQTLELVDCALTSQDGEFVGHLLPKLHSLEVFDLSINRNIGSSLDIIAQGLKSTVGLKVLKLHSCGLSPKSVRLLDGAFASLDVLRTLDLSCNKDLGGGFEDAPAQLALLKHLEVLDLHQCSLTADDVASLTQIIPLLSNLQELDLSSNRKVGVSSETLLSRLRFVPALKSLFINRCALESETFTALAEATVYLPSLEMLNLSWNKCVGGNLELLLQTLKLSRSLRVLRLSSCALVTEDVVLLASVIWTGHLAELQKLDLSYNDSICDTGWAIFCQNLCFLKKLTELDISLPPSSSRGCGRWFRHLLCAVTKLPVVTEIGMRRWVIPASKEEELECLTHKHRRGIQFDHGGFQRAAS", "length": 487, "header": "tr|A0A9J7F592-1|A0A9J7F592_CRIGR Isoform 1 of LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 31 OS=Cricetulus griseus OX=10029 GN=Lrrc31 PE=4 SV=1 CANONICAL=A0A9J7F592-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F592", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F592", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F592" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770060", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 331, "end_pos": 333 }, { "start_pos": 393, "end_pos": 395 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F5A4-1", "uniprot_ac": "A0A9J7F5A4", "uniprot_id": "A0A9J7F5A4_CRIGR", "mass": { "chemical_mass": 66584.0, "monoisotopic_mass": 66584.0 }, "refseq": { "ac": "XP_003512042", "name": "RNA exonuclease 1 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512042" }, "gene_names": [ { "name": "LOC100769230", "type": "recommended", "evidence": [ { "id": "A0A9J7F5A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4" } ] }, { "name": "LOC100769230", "type": "synonym", "evidence": [ { "id": "XP_003512042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512042" } ] } ], "protein_names": [ { "name": "RNA exonuclease 1 homolog", "type": "synonym", "evidence": [ { "id": "XP_003512042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512042" }, { "id": "A0A9J7F5A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615307.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_003512042.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003512042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512042" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5A4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5A4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06145", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06145", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769230", "url": "https://www.ncbi.nlm.nih.gov/gene/100769230", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013520", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013520", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034922", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034922", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769230", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5A4", "url": "https://www.orthodb.org/?gene=A0A9J7F5A4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12801", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12801", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12801:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12801:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15870", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15870", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003512042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512042", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLKATEESWFPLGDLEARRGVVFPNEDLLMPSCQYPSKRGQRSQSVVPFPRPGPTLYCCSSVTPWESLHWRPQQDGRKLWCPETSTLLSSRSSSASRREERRVIHMASPSLANSTTAAKRTFSNNRATAQPPHITYIVGPQQVAYSYSLFGVKKVTHNKEFKDRIPDAMRQHYLGLFTEECLKFSSSRPEAIEKAQSEEKEVYDQSPSKNKYLNVALHTLKKLRGLVPSAVPGLNKATLYSRLRSYLLTEEQRKEHGFPFAHPEKPGSAMLFTREQPRSPTHRTCCRCGTEYTVSSSGCCLCSDPCVFHWGRIVSIRVPGGSQVRYSCCYAPTGATGCTVAKQHVQDGRKDNLQGFAKTFPKKDWEAHAGIYALDCEMSYTTHGLELTRVTVVDTDLRVIYDTFVKPDNEIVDYNTVFSGVTEADLANTNVRLRDVQAMLLSLFSAETILVGHSLESDLLALKFIHSTVVDTSVLFPHHRGLPYKRSLRGLISHYLNRMIQTNRGGHSSIEDASACMQLVTWKIQEDAKTSSPPQQETTCPKCNLQQKLRVYTSRYTQTPTTMQIPEATNKLHWEERGSDPPYTLQPET", "length": 590, "header": "tr|A0A9J7F5A4-1|A0A9J7F5A4_CRIGR Isoform 1 of RNA exonuclease 1 homolog OS=Cricetulus griseus OX=10029 GN=LOC100769230 PE=3 SV=1 CANONICAL=A0A9J7F5A4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4/entry", "sequence": { "sequence": "MRLKATEESWFPLGDLEARRGVVFPNEDLLMPSCQYPSKRGQRSQSVVPFPRPGPTLYCCSSVTPWESLHWRPQQDGRKLWCPETSTLLSSRSSSASRREERRVIHMASPSLANSTTAAKRTFSNNRATAQPPHITYIVGPQQVAYSYSLFGVKKVTHNKEFKDRIPDAMRQHYLGLFTEECLKFSSSRPEAIEKAQSEEKEVYDQSPSKNKYLNVALHTLKKLRGLVPSAVPGLNKATLYSRLRSYLLTEEQRKEHGFPFAHPEKPGSAMLFTREQPRSPTHRTCCRCGTEYTVSSSGCCLCSDPCVFHWGRIVSIRVPGGSQVRYSCCYAPTGATGCTVAKQHVQDGRKDNLQGFAKTFPKKDWEAHAGIYALDCEMSYTTHGLELTRVTVVDTDLRVIYDTFVKPDNEIVDYNTVFSGVTEADLANTNVRLRDVQAMLLSLFSAETILVGHSLESDLLALKFIHSTVVDTSVLFPHHRGLPYKRSLRGLISHYLNRMIQTNRGGHSSIEDASACMQLVTWKIQEDAKTSSPPQQETTCPKCNLQQKLRVYTSRYTQTPTTMQIPEATNKLHWEERGSDPPYTLQPET", "length": 590, "header": "tr|A0A9J7F5A4-1|A0A9J7F5A4_CRIGR Isoform 1 of RNA exonuclease 1 homolog OS=Cricetulus griseus OX=10029 GN=LOC100769230 PE=3 SV=1 CANONICAL=A0A9J7F5A4-1" }, "locus": {} } ], "glycosylation": [], 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769230", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769230", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5A4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5A4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", 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"MNIVRKLNLMVPWSVFSFHMLLFLLQGYIRASAVLTETPESEFHEKEQKRALLALQFEATSPRYFFHEAINWGESKIKGSCPHECLNGAFCSKTGTCDCQIFQALGTRCQIVPNMGSGRDGICKTWGQYHFETFDGIYYYFPGSCSYIFAKDCGNLEPQYTVWVHNSPKCLGSVYSCYRSISLFFSNQEEIRIYGHEIKMNGIRLSLPQTIGQVYIEKLADYILVKSTFGFSLAWDGISGIYLKLSEEHRGKSCGLCANYNGIQSDDFVIQQEDYTEDIAMFANSWMVQTLDDPKCIPTPSDFPNPCSSGMPAFEAIFFKCQILLQFPFLSCHEYIDPYLYIASCVNDLCKTDDDETYCRAATEYARACSHAGFPIQDWRDDFPACTDKCDDSFVHRDCISCCPPSCTFEKQCLGSNLHCLDGCYCADGLIMDNGTCISLESCPCSFHGLAYSVGSKIEQECTECVCVGGVWNCTEHDCPVQCSVVGDSHFTTFDGRHYSFIGLCQYILVKGTGKDKFTITLQKAHCEQNLGLVCLQSITLILEDDFNKQVTLSRGGQILTSPNQGFTLNGIVEIQTLSSLFILLRTTFGLKILFAIDGERIYIQLSSEWKRRTLGLCGTFNGNIRDDFLSPSGMIEGTPQLHAHAWRVSSTCFAPVHVPMVDPCNINQQNIGYAAHCDVIHQELFAPCHVYVSPGLYYQLCRHDACKCGSSCLCNALAHYAYLCGQRGVPIDFRAQISFCAVVCQKGMLYHHCSSFCLRSCTSLSSPEPCNDDCAEGCNCPEGKFYEDTLNFCVPIYHCRCHYRGSIYQPGELIPTPSGLCQCSNGTVKCDEPATPSTVHACPEGKEYFDCRFPDPELPAGGINCETTCANLAMNFTCAPSSPCISGCVCAPGMAEHKGKCYVPESCPCIWKDWEYVSGEVISTPCYTCVCRRGMFNCTYYPCPAVCTVYGDRHYYSFDGLEYDYISDCQVFLIKSTDDTDISVIAQNKKCFDNDIVCSKSVLISIGDTEIYLNDAPYKQKRSGFFLESKPTYKLWKAGHYIVVYFPEEDITILWDEKTTIHIKVGPQWKNKLAGLCGNFDKCTSNDMTTSNNLEVRNAQVFGDSWALGQCEDPIEALKPCEAHQNKFPYAKKECSILYSDVFAPCRNVIDVTSFAKNCHEDTCNCNLGGDCECLCTSVAAYAYKCCQEGVPVRWRSPTVCALDCEYYNEGFGEGPYMLASYGQSGLVLGANMTSRSVFSLPRSSDHGNLFFIFMITPGLFKEKTSSLALISLESAERPNYFLYVHDNDTLGLLLWQANSVFRQRATFFHHRGLWIPGYSAFELYSKKGFFIVFTDSSVKASKYDDSEEFKQSSSFSIEEIQAVVPYRRMCEWRYEPCATPCFRTCSDPEALACAFLPPVEGCLPYCPKHMILDEVTLKCVYPEDCIPLTPTEPALMPPDADMVTPSDITPTTGLECEPQQFDPVYNCSQYICLNMEWTFYNWSLNCPKDLEMPDCGFRGWPVQVNTDICCPEWECPCRCSMLSELSIITFDGNSAALSSKASYILVRIPGEIVVVHIEKCSLNQNGNAVKKPASFGRISGLCFKKLNVTTSTHKILISRVARKVDVDSIVVPLPFSSQELFIEDSGTMYVITTPAGLIIKWAHLTGIIDIHFSPQFNLSSYTEGLCGICNDDPDDDLRMQNGTVITNMEDIELFIGSWEVEKSFEVTMRRPVRNCTEYDCSHCIELLNRDVFILCRDKVSPRDFCEKMWLNYTYLWSYECDAISAYVALCNKFDICIQWRTPDYCPLSCPEGKEYQPCVRPCEARTCLNKWFYGHSSCLNLREDCVCKNGTILHRPDKTLCIPEQECGCTDNEDQPHSVGEIWNGGVDECALYKCLEDGSIIPVEPVCEEEPSPICEREAEVVMGIIDELTCCSKEVCGCDMTLCDKTIPVCTSSQKLIVGYSALSCCPQYECECDTLKCPNISTPDCREDQFVLQVQQGEPCCFYPFCVCETCSEPTPQCTDGEFLTVDLNTTHLCCPQYYCVCEPNLCPPPLLNCAKDMDLVKENVSGQCCPNWHCECNCENLVIPICEVGEFATIDQNFQSDCGCVQYLCEKDDVCVFQEVSVLNPGQSLTKYLEGDFCHTIECLEEKDNNTGFHTLNVTMVNCSKECDVHQMYTPAPSDYDCCGTCKNISCKFHMENGTSVIYEEGNTWHYNCTTYECVKTDEGATILNYTFVCPPFNETECKLNEGIVKLYNEGCCKICKREERMCQKVIIKSMIKKQDCVSQTSISVASCDGKCPSATIYNINVESHLRFCKCCRENGVRNLTVPLHCSGNGTEVMYTLQEPIDCTCQWN", "length": 2338, "header": "tr|A0A9J7F5D2-1|A0A9J7F5D2_CRIGR Isoform 1 of Otogelin-like protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Otogl PE=3 SV=1 CANONICAL=A0A9J7F5D2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1453, "start_aa": "Thr", "end_pos": 1453, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1453", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773848", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773848", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D2" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "L-arabinose metabolic process", "id": "GO:0046373", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046373", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "alpha-L-arabinofuranosidase activity", "id": "GO:0046556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5D2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1233, "end_pos": 1235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1289, "end_pos": 1291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1468, "end_pos": 1470, "annotation": "n_glycosylation_sequon" }, 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027248351.1. 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"id": "XP_003509125", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509125" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614645.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509125", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509125" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mfn1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1", "locus": {} } ], "crossref": [ { "id": "cd09912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756764", "url": "https://www.ncbi.nlm.nih.gov/gene/100756764", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027094", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027094", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030381", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030381", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756764", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756764", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IMDTINV", "url": "https://omabrowser.org/oma/group/IMDTINV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F5F1", "url": "https://www.orthodb.org/?gene=A0A9J7F5F1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10465", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10465", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10465:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10465:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00350", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00350", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509125", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509125", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9V0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAETVSPLKHFVLAKKAITAIFGQLLEFVTEGSHFVEATYRNPELDRVATEDDLVEIQGYRNKLAVIGEVLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHTTNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVHVFWPKAKCALLRDDLVLVDSPGTDVTTEMDTWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVTPLEARNRIFFVSAKEVLNSRKHKAQGMPEGGGALAEGFQARLQEFQNFEKTFEECISQSAVKTKFEQHTIRAKQILDTVKNILDSVNVAAAEKRVYSMEEREDQIDRLDFIRNQMNLLTLDVKKKIKQVTEEVANKVSCAMTDEICRLSVLVDEFCSEFHPTPSVLKVYKSELNKHIEDGMGRNLADRCTNEVNASMLQSQQEIIENLKPLLPAGIQNKLHALIPCKKFDLSYDLNFHKLCSDFQEDIVFRFSLGWSSLVHRFLGSSNAQRVLLGLSEPVFQLPRSLASTPTAPPNPAAPDNAAQEELMITLITGLASLTSRTSMGIIVVGGVIWKTVGWKLISVSLSMYGALYLYERLTWTNRAKERAFKQQFVNYATEKLQMIVSFTSANCSYQVQQEMATTFARLCQQVDVTQKHLEEEIARLSKEIDQLEKIQNNSKLLRNKAVQLESELENFSKQFLHPSNEES", "length": 741, "header": "tr|A0A9J7F5F1-1|A0A9J7F5F1_CRIGR Isoform 1 of Mitofusin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfn1 PE=4 SV=1 CANONICAL=A0A9J7F5F1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1/entry", "sequence": { "sequence": "MAETVSPLKHFVLAKKAITAIFGQLLEFVTEGSHFVEATYRNPELDRVATEDDLVEIQGYRNKLAVIGEVLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHTTNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVHVFWPKAKCALLRDDLVLVDSPGTDVTTEMDTWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVTPLEARNRIFFVSAKEVLNSRKHKAQGMPEGGGALAEGFQARLQEFQNFEKTFEECISQSAVKTKFEQHTIRAKQILDTVKNILDSVNVAAAEKRVYSMEEREDQIDRLDFIRNQMNLLTLDVKKKIKQVTEEVANKVSCAMTDEICRLSVLVDEFCSEFHPTPSVLKVYKSELNKHIEDGMGRNLADRCTNEVNASMLQSQQEIIENLKPLLPAGIQNKLHALIPCKKFDLSYDLNFHKLCSDFQEDIVFRFSLGWSSLVHRFLGSSNAQRVLLGLSEPVFQLPRSLASTPTAPPNPAAPDNAAQEELMITLITGLASLTSRTSMGIIVVGGVIWKTVGWKLISVSLSMYGALYLYERLTWTNRAKERAFKQQFVNYATEKLQMIVSFTSANCSYQVQQEMATTFARLCQQVDVTQKHLEEEIARLSKEIDQLEKIQNNSKLLRNKAVQLESELENFSKQFLHPSNEES", "length": 741, "header": "tr|A0A9J7F5F1-1|A0A9J7F5F1_CRIGR Isoform 1 of Mitofusin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfn1 PE=4 SV=1 CANONICAL=A0A9J7F5F1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9V0/entry", "sequence": { "sequence": "MKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHTTNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVHVFWPKAKCALLRDDLVLVDSPGTDVTTEMDTWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVTPLEARNRIFFVSAKEVLNSRKHKAQGMPEGGGALAEGFQARLQEFQNFEKTFEECISQSAVKTKFEQHTIRAKQILDTVKNILDSVNVAAAEKRVYSMEEREDQIDRLDFIRNQMNLLTLDVKKKIKQVTEEVANKVSCAMTDEICRLSVLVDEFCSEFHPTPSVLKVYKSELNKHIEDGMGRNLADRCTNEVNASMLQSQQEIIENLKPLLPAGIQNKLHALIPCKKFDLSYDLNFHKLCSDFQEDIVFRFSLGWSSLVHRFLGSSNAQRVLLGLSEPVFQLPRSLASTPTAPPNPAAPDNAAQEELMITLITGLASLTSRTSMGIIVVGGVIWKTVGWKLISVSLSMYGALYLYERLTWTNRAKERAFKQQFVNYATEKLQMIVSFTSANCSYQVQQEMATTFARLCQQVDVTQKHLEEEIARLSKEIDQLEKIQNNSKLLRNKAVQLESELENFSKQFLHPSNEES", "length": 666, "header": "tr|A0A9J7H9V0-1|A0A9J7H9V0_CRIGR Computationally mapped isoform of Mitofusin-1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Mfn1 PE=4 SV=1 CANONICAL=A0A9J7F5F1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756764", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756764", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MPL1-1", "protein_name": "Mitofusin 1", "gene_name": "MFN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAETASPLKHFVLAKKTITAIFDQLLEFVTEGSHFVEATYKNPELDRVATEDDLIEIQRYKNKLSVIGEVLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHTTNCFLSVEGTDGDKAYLMTEGSDEKRSVKTVNQLAHALHMDKDLKAGCLVHVFWPKAKCALLRDDLVLVDSPGTDVTTELDSWIDKFCLDADVFVLVANSESTLMNTEKQFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELRVVDPLEARNRIFFVSAKEVLSARKHKAQGMPEGGGALAEGFQARLQEFQNFEQIFEECISQSAVKTKFEQHTIRAKQILETVKNIMDSINVAAAEKRVYSIEEREDQIDRLDFIRNQMNLLTLDVKKKIREVTEEVANKVSCAMTDEICRLSVLVDEFCSEFHPTPSVLKVYKNELNKHIEDGMGRNLADRCTNEVNASMLQSQQEIIENLKPLLPAGIQNKLHTLVPCKKFDLSYDLNCHKLCSDFQEDIVFRFSLGWASLVHRFLGPTNAQRVLLGLSEPIFQLPRSLASTPTAPSNPATPDNASQEELMVTLITTLASLTSRTSMGIIVVGGVIWKTVGWKLISVSLSMYGALYLYERLTWTTRAKERAFKQQFVNYATEKLQMIVSFTSANCSHQVQQEMATTFARLCQQVDITQRHLEEEIARLSKEIDQLEKIQNNSKLLRNKAVQLENQLENFTKRFLHSSREEES", "length": 742 }, "evidence": [ { "id": "A0A9J7F5F1", "url": "https://omabrowser.org/oma/group/A0A9J7F5F1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q811U4-1", "protein_name": "Mitofusin-1", "gene_name": "Mfn1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETVSPLKHFVLAKKAITAIFGQLLEFVTEGSHFVEATYRNPELDRIASEDDLVEIQGYRNKLAVIGEVLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHTTNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVHVFWPKAKCALLRDDLVLVDSPGTDVTTELDIWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVSPSEARNRIFFVSAKEVLNSRKHKAQGMPEGGGALAEGFQARLQEFQNFEQTFEECISQSAVKTKFEQHTIRAKQILDTVKNILDSVNVAAAEKRVYSMEEREDQIDRLDFIRNQMNLLTLDVKKKIKEVTEEVANKVSCAMTDEICRLSVLVDEFCSEFHPTPSVLKVYKSELNKHIEDGMGRNLADRCTNEVNASILQSQQEIIENLKPLLPAGIQNKLHTLIPCKKFDLSYDLNCHKLCSDFQEDIVFRFSLGWSSLVHRFLGSTNAQRVLLGLSEPIFQVPRSLASTPTAPSNPAAPDNAAQEELMITLITGLASLTSRTSMGIIVVGGVIWKTVGWKLISVTLSMYGALYLYERLTWTTRAKERAFKQQFVNYATEKLQMIVSFTSANCSHQVQQEMATTFARLCQQVDVTQKHLEEEIARLSKEIDQLEKIQNNSKLLRNKAVQLESELENFSKQFLHPSSGES", "length": 741 }, "evidence": [ { "id": "A0A9J7F5F1", "url": "https://omabrowser.org/oma/group/A0A9J7F5F1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWA4-1", "protein_name": "Mitofusin-1", "gene_name": "MFN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEPVSPLKHFVLAKKAITAIFDQLLEFVTEGSHFVEATYKNPELDRIATEDDLVEMQGYKDKLSIIGEVLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHITNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVRVFWPKAKCALLRDDLVLVDSPGTDVTTELDSWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVNALEAQNRIFFVSAKEVLSARKQKAQGMPESGVALAEGFHARLQEFQNFEQIFEECISQSAVKTKFEQHTIRAKQILATVKNIMDSVNLAAEDKRHYSVEEREDQIDRLDFIRNQMNLLTLDVKKKIKEVTEEVANKVSCAMTDEICRLSVLVDEFCSEFHPNPDVLKIYKSELNKHIEDGMGRNLADRCTDEVNALVLQTQQEIIENLKPLLPAGIQDKLHTLIPCKKFDLSYNLNYHKLCSDFQEDIVFRFSLGWSSLVHRFLGPRNAQRVLLGLSEPIFQLPRSLASTPTAPTTPATPDNASQEELMITLVTGLASVTSRTSMGIIIVGGVIWKTIGWKLLSVSLTMYGALYLYERLSWTTHAKERAFKQQFVNYATEKLRMIVSSTSANCSHQVKQQIATTFARLCQQVDITQKQLEEEIARLPKEIDQLEKIQNNSKLLRNKAVQLENELENFTKQFLPSSNEES", "length": 741 }, "evidence": [ { "id": "A0A9J7F5F1", "url": "https://omabrowser.org/oma/group/A0A9J7F5F1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R4Z9-1", "protein_name": "Mitofusin-1", "gene_name": "Mfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAETVSPLKHFVLAKKAITAIFGQLLEFVTEGSHFVEATYRNPELDRIATEDDLVEIQGYRNKLAVIGEVLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHTTNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVHVFWPKAKCALLRDDLVLVDSPGTDVTTELDIWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERLSKPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVSPLEARNRIFFVSAKEVLNSRMNKAQGMPEGGGALAEGFQARLQEFQNFEQTFEECISQSAVKTKFEQHTIRAKQILDTVKNILDSVNVAAAEKRVYSMEEREDQIDRLDFIRNQMNLLTMDVKKKIKEVTEEVANKVSCAMTDEICRLSVLVDEFCSEFHPTPSVLKVYKSELNKHIEDGMGRNLADRCTSEVNASILQSQQEIIENLKPLLPAGIQNKLHTLIPCKKFDLSYDLNCHKLCSDFQEDIVFRFSLGWSSLVHRFLGSTNAQRVLLGLSEPIFQVPRSLASTPTAPSNPAAPDNAAQEELMITLITGLASLTSRTSMGIIVVGGVIWKTVGWKLISVTLSMYGALYLYERLTWTTRAKERAFKQQFVNYATEKLQMIVKFTSANCSHQVQQEMATTFARLCQQVDVTQKHLEEEIARLSKEIDQLEKIQNNSKLLRNKAVQLERELENFSKQFLHPSSGES", "length": 741 }, "evidence": [ { "id": "A0A9J7F5F1", "url": "https://omabrowser.org/oma/group/A0A9J7F5F1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5F1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial fusion", "id": "GO:0008053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008053", "evidence": [ { 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Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248350" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nt5dc3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5H8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5H8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07522", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07522", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100775059", "url": "https://www.ncbi.nlm.nih.gov/gene/100775059", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100775059", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775059", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5H8", "url": "https://www.orthodb.org/?gene=A0A9J7F5H8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05761", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05761", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248350", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATVATAARGAGAGRGAAAGLRAGGGSAVRGRPRAGCTRRLCTAPAAVDMKRYLWARYHEAKRSTDELVPSIMNNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQMGTVYRGLSVVPDEEVIDMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYAEQTRAVLAKLAAHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELRIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAESQLVLQEWKKERKEMREMTKSFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVHHTFYPRRTPLQHELPAWSDSPSAFKAPLLQEAQAK", "length": 545, "header": "tr|A0A9J7F5H8-1|A0A9J7F5H8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 5'-nucleotidase domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nt5dc3 PE=3 SV=1 CANONICAL=A0A9J7F5H8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8/entry", "sequence": { "sequence": "MATVATAARGAGAGRGAAAGLRAGGGSAVRGRPRAGCTRRLCTAPAAVDMKRYLWARYHEAKRSTDELVPSIMNNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQMGTVYRGLSVVPDEEVIDMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYAEQTRAVLAKLAAHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELRIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAESQLVLQEWKKERKEMREMTKSFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVHHTFYPRRTPLQHELPAWSDSPSAFKAPLLQEAQAK", "length": 545, "header": "tr|A0A9J7F5H8-1|A0A9J7F5H8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 5'-nucleotidase domain-containing protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nt5dc3 PE=3 SV=1 CANONICAL=A0A9J7F5H8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7F5H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A9J7F5H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 386, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 386, "end_pos": 386, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F5H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5H8" }, 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614464.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508036", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508036" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5K0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754329", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K0", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5K0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5K0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754329", "url": "https://www.ncbi.nlm.nih.gov/gene/100754329", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754329", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754329", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5K0", "url": "https://www.orthodb.org/?gene=A0A9J7F5K0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508036", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508036", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5K0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTQTTIKTSASPGLESLTVVGSSRALIRPLGLLRLCQLLSTCLAFSLVAHGRNWMGPMGNWCMFSWCFCFSMTLLILIIELSGFLSRVPLSWLDFSITCANYAVFFCLTSSIIYPVTYVQFLAYGSDRNRAIVATVFSCIACVAYATEVTWAQARPGGIAGYMATVPGRLKVVETFVACVIFLFINNPRLYKLEPALEWCVAVYAICFILTMVAIILKLGNWTNIIPIPFPTFLKSLAFVSVLMYTTAIVIWPLYQFNEVFHGQPHRATDANCQYKHPHSVCAWDRRLAVAVLTGFNLLAYLADFMYSGTNV", "length": 313, "header": "tr|A0A9J7F5K0-1|A0A9J7F5K0_CRIGR Isoform 1 of Myeloid-associated differentiation marker OS=Cricetulus griseus OX=10029 GN=LOC100754329 PE=3 SV=1 CANONICAL=A0A9J7F5K0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5K0/entry", "sequence": { "sequence": "MVTQTTIKTSASPGLESLTVVGSSRALIRPLGLLRLCQLLSTCLAFSLVAHGRNWMGPMGNWCMFSWCFCFSMTLLILIIELSGFLSRVPLSWLDFSITCANYAVFFCLTSSIIYPVTYVQFLAYGSDRNRAIVATVFSCIACVAYATEVTWAQARPGGIAGYMATVPGRLKVVETFVACVIFLFINNPRLYKLEPALEWCVAVYAICFILTMVAIILKLGNWTNIIPIPFPTFLKSLAFVSVLMYTTAIVIWPLYQFNEVFHGQPHRATDANCQYKHPHSVCAWDRRLAVAVLTGFNLLAYLADFMYSGTNV", "length": 313, "header": "tr|A0A9J7F5K0-1|A0A9J7F5K0_CRIGR Isoform 1 of Myeloid-associated differentiation marker OS=Cricetulus griseus OX=10029 GN=LOC100754329 PE=3 SV=1 CANONICAL=A0A9J7F5K0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251738", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251738" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5Q8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Q8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107979438", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Q8", "locus": {} } ], "crossref": [ { "id": "107979438", "url": "https://www.ncbi.nlm.nih.gov/gene/107979438", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:107979438", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107979438", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027251738", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251738", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Q8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9Z9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MITASAKQDQQDGSLVLKLNMDFKIVRTAYVAITYIDTWPALQCICGLVPSKGASFMYLFIHSPMKSMNSRLSERSCLKEVVNRTKGWSQFQPRRKWRRAIFNKGEMKATGIPEECSKPFPHSCPVLTSWDELAINGQEGIGELLQDAFLRWRNNKGIAMEKNVWMKETPIKTVTPPSEDCFHICDSEGNCGSYNAMKHVDFCNYVNMVGRISSSVGVGSCSVEYIAN", "length": 228, "header": "tr|A0A9J7F5Q8-1|A0A9J7F5Q8_CRIGR Isoform 1 of Uncharacterized protein LOC107979438 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC107979438 PE=4 SV=1 CANONICAL=A0A9J7F5Q8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Q8/entry", "sequence": { "sequence": "MITASAKQDQQDGSLVLKLNMDFKIVRTAYVAITYIDTWPALQCICGLVPSKGASFMYLFIHSPMKSMNSRLSERSCLKEVVNRTKGWSQFQPRRKWRRAIFNKGEMKATGIPEECSKPFPHSCPVLTSWDELAINGQEGIGELLQDAFLRWRNNKGIAMEKNVWMKETPIKTVTPPSEDCFHICDSEGNCGSYNAMKHVDFCNYVNMVGRISSSVGVGSCSVEYIAN", "length": 228, "header": "tr|A0A9J7F5Q8-1|A0A9J7F5Q8_CRIGR Isoform 1 of Uncharacterized protein LOC107979438 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC107979438 PE=4 SV=1 CANONICAL=A0A9J7F5Q8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Z9/entry", "sequence": { "sequence": "MITASAKQDQQDGSLVLKLNMDFKIVRTAYVAITYIDTWPALQCICGLVPSKGASFMYLFIHSPMKSMNSRLSERSCLKEVVNRTKGWSQFQPRRKWRRAIFNKGEMKATGIPEECSKPFPHSCPVLTSWDELAINGQEGIGELLQDAFLRWRNNKGIAMEKNVWMKETPIKTVTPPSEDCFHICDSEGNCGSYNAMTMRSE", "length": 202, "header": "tr|A0A9J7F9Z9-1|A0A9J7F9Z9_CRIGR Computationally mapped isoform of Uncharacterized protein LOC107979438 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107979438 PE=4 SV=1 CANONICAL=A0A9J7F5Q8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F5S1-1", "uniprot_ac": "A0A9J7F5S1", "uniprot_id": "A0A9J7F5S1_CRIGR", "mass": { "chemical_mass": 50632.0, "monoisotopic_mass": 50632.0 }, "refseq": { "ac": "XP_027250061", "name": "uncharacterized protein C21orf58 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250061" }, "gene_names": [ { "name": "CUNH21orf58", "type": "recommended", "evidence": [ { "id": "A0A9J7F5S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1" } ] }, { "name": "CUNH21orf58", "type": "synonym", "evidence": [ { "id": "XP_027250061", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250061" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C21orf58 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F5S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C21orf58 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027250061", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250061" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 41% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027250061.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250061", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250061" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH21orf58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5S1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5S1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764544", "url": "https://www.ncbi.nlm.nih.gov/gene/100764544", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764544", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764544", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5S1", "url": "https://www.orthodb.org/?gene=A0A9J7F5S1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28604", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28604", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28604:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28604:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250061", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250061", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTRAPATLQGRSAASPALHWCLGAPTLIADANERDAGLPGLAAARQLRGGKVRANRFPAARCLAPPPGRRGTRTRASERPSKPRARSFHSLGGTCRSRSWDPLRLKPSRTLATLPSRPSRTNPKNRVQQYSLSDTYNLDWRPRCARSCHCIHAHSSVHRVTGFRLLTVTPPPLPGNSLPGVTASYTVVRMSDSSMTDQMTRLTLRLLEQMLEQERESMGRAGQQEKPDTALKSALRRRRDLLQRLWEQQLIDEPSPARAWSRTHERTLAPALNPKVPPMDVFPSGSPSLPPPPEPPRIIQHPVPQPPATIIQQLPQQPLIAQISPPQAFPTQRSGSIKEDMVEMMLMQNAQMHQILMQNMMLKVLPPGPTGPPAATLQDQRWAHRGVLRAEKQKPPLVHHHHHYAPPTQLQAASTSGAPAGYSVWPPVVAATALPHAASFLPTVSHLTEPTTSHPSYP", "length": 459, "header": "tr|A0A9J7F5S1-1|A0A9J7F5S1_CRIGR Isoform 1 of Uncharacterized protein C21orf58 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH21orf58 PE=4 SV=1 CANONICAL=A0A9J7F5S1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1/entry", "sequence": { "sequence": "MRTRAPATLQGRSAASPALHWCLGAPTLIADANERDAGLPGLAAARQLRGGKVRANRFPAARCLAPPPGRRGTRTRASERPSKPRARSFHSLGGTCRSRSWDPLRLKPSRTLATLPSRPSRTNPKNRVQQYSLSDTYNLDWRPRCARSCHCIHAHSSVHRVTGFRLLTVTPPPLPGNSLPGVTASYTVVRMSDSSMTDQMTRLTLRLLEQMLEQERESMGRAGQQEKPDTALKSALRRRRDLLQRLWEQQLIDEPSPARAWSRTHERTLAPALNPKVPPMDVFPSGSPSLPPPPEPPRIIQHPVPQPPATIIQQLPQQPLIAQISPPQAFPTQRSGSIKEDMVEMMLMQNAQMHQILMQNMMLKVLPPGPTGPPAATLQDQRWAHRGVLRAEKQKPPLVHHHHHYAPPTQLQAASTSGAPAGYSVWPPVVAATALPHAASFLPTVSHLTEPTTSHPSYP", "length": 459, "header": "tr|A0A9J7F5S1-1|A0A9J7F5S1_CRIGR Isoform 1 of Uncharacterized protein C21orf58 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH21orf58 PE=4 SV=1 CANONICAL=A0A9J7F5S1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 371, "start_aa": "Thr", "end_pos": 371, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr371", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764544", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764544", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F5S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S1" }, { "id": "PF15248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15248" } ], "ann_type": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F5S3-1", "uniprot_ac": "A0A9J7F5S3", "uniprot_id": "A0A9J7F5S3_CRIGR", "mass": { "chemical_mass": 14324.0, "monoisotopic_mass": 14324.0 }, "refseq": { "ac": "XP_027248685", "name": "late cornified envelope protein 1C-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248685" }, "gene_names": [ { "name": "LOC113833094", "type": "recommended", "evidence": [ { "id": "A0A9J7F5S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S3" } ] }, { "name": "LOC113833094", "type": "synonym", "evidence": [ { "id": "XP_027248685", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248685" } ] } ], "protein_names": [ { "name": "Late cornified envelope protein 1C-like", "type": "synonym", "evidence": [ { "id": "A0A9J7F5S3", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248685", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248685" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5S3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833094", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S3", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5S3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5S3", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833094", "url": "https://www.ncbi.nlm.nih.gov/gene/113833094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113833094", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027248685", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248685", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5S3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5S3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCQQSQQQCQPPPKCPPKCQTPKCPPKCQTPKCPPKCPPKCPPVSSCCSLGSGGCGSSSGGCCGSSSGGCCSSGGGGCCLSHHRPRRSLRRHRHSSGCCSSGGSSGCCGSSGGSSGCCGSSGGSSCGSSGCCGSSGGSSCGSSQQSGGCC", "length": 151, "header": "tr|A0A9J7F5S3-1|A0A9J7F5S3_CRIGR Isoform 1 of Late cornified envelope protein 1C-like OS=Cricetulus griseus OX=10029 GN=LOC113833094 PE=4 SV=1 CANONICAL=A0A9J7F5S3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5S3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S3/entry", "sequence": { "sequence": "MSCQQSQQQCQPPPKCPPKCQTPKCPPKCQTPKCPPKCPPKCPPVSSCCSLGSGGCGSSSGGCCGSSSGGCCSSGGGGCCLSHHRPRRSLRRHRHSSGCCSSGGSSGCCGSSGGSSGCCGSSGGSSCGSSGCCGSSGGSSCGSSQQSGGCC", "length": 151, "header": "tr|A0A9J7F5S3-1|A0A9J7F5S3_CRIGR Isoform 1 of Late cornified envelope protein 1C-like OS=Cricetulus griseus OX=10029 GN=LOC113833094 PE=4 SV=1 CANONICAL=A0A9J7F5S3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613934.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503086", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503086" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5T1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5T1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753122", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5T1", "locus": {} } ], "crossref": [ { "id": "A0A9J7F5T1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F5T1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753122", "url": "https://www.ncbi.nlm.nih.gov/gene/100753122", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"MATADPSTPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSTSSSGGGLLPYPRRRPPHPPRGGGSGGGGGSSSSSSSSQQPLRNFSRSRHPSERGHLRGHSSYRPKEPFRTHPPPVRMPSGSLSESSPRPSFWERSHIALDRFRFRGRPYRGGSRWSRGRGVGERGGKPGCRPPPGGGGGGGGGGAGSGFGGGGGGGSSSSSQSWREPSPPRKSSKSFGRSPSRKQNHSSKSENCGEETFEDLLLKYKQIQLELECINKDEKLALSSKEEHVQEDAKTLHFEDQTSTDNASITKDSSKEVAPEEKTQVKTFQAFELKPLRQKLTLPGDKNRLKRVKDGTKQLSLKSSTTDSSQGLEDKEQNLTRRISTSDILSEKKLGEDEEELSELQLRLLALQSASKKWQQKEQQVMKESKEKLTKTKAVQQKTKTSTKAHSAKKVSTTAKQALRKQQTKAWKKLQQQKEQERQKEEDQRKQAEEEERRKREEEIRKIRDLSNQEEQYNRFMKLVGGKRRSRSKSSDPDLRRSLDKQPDSGGGIYQYDNYEEVAMDTDSETSSPAPSPVQPPFFSECSLGYFSSAPSVSLPPPAQVSSVPSLSQPYGEGLCVSLEPLPPPPPLPPLPPEDPEQPPKPPFADEEEEEEMLLREELLKSLANKRAFKPEEASSNSDPPSPPVLNNSQPLSRSNLSIVSINTVSQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESDGEASKATNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKIEYRLLKEEIANREKQRLIKSDQLKTNSSSPANSDVEMDGISRIAMVTKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSVNRVFLKKLQEQIHRVQQRVTIKKALTLKYGEELARAKAVASKELGKRKLEQDRLGPNKMMRFDNSPISSPRKHSAELIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQNLVAVVEEEAEFSLPQPSLHDLTQDKLTLDTEENEVDDEVSSGSNRERRRSFLESNAFTKPNLKHTDTPNKECINKLSKSTVEKPELFLGLKIGELQKLYSKADSLKQLISKTTTGITEKTLHGQEISVDVDFLTAQSKTTEVKPCPFRPYQSPLLVFKSYRFSPYYRTKEKLPLSSVSYSNMIEPEQCFCRFDLTGTCNDDDCQWQHVQDYTLSRKQLFQDILSYDLSLIGCSETSTDEEVASATEKYVEKLFGVNKDRMSMDQMAVLLVSNVNESKGHTPPFTTYKDKRKWKPKFCRKPVSENSFSSDDEQSAGPIQYAFRPENQINVPALDTVVTPDDVRYFTSETDDIANLEASVLENPSHVQLWLKLAYKCLNQNEGLCSESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAIEYAPDYQSFWTFLHLESTFEEKDYVCERMVQFLMGAAKQELSDILSFQLLEALLFRVQLHIFTGRCQSALAILQNALKLANDAIVAEYLKTDDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQSVQDVKTNPDLLLAVFEDAVKACTDESLSSGERIEVCLPLYTNMIALHQLLERYEAAVELCKSLLESCPANCQLLETLAALYLKTDQYDKARMVWLTAFENNCQNAEVFYHLCKFFILQNQGDNLLPFLRQFIASFFKPGFEKYSNVDLFRYLLNIPGPLDIPACLCKGNFDDDVSNNQVPYLWLIYCLCHPLQSSIKDTVEAYEAALGVAMRSDIVQKIWMDYLVFANNRAAGSRNKVQEFKFFTDLVNRCLVTVPARYPIPFSSADYWSNYEFHNRVIFFYLSCVPKTQHSKTLERFCSIMPTNSRLALRLLQHEWEESNVQILKLQAKMFTYNIPTCLATWKIAIAAEIVLKGQKEVHRLYQRALQKLPLCASLWKDQLLFEASEGGKTDNLRKLVSKCQEIGVSLNELLNLNSNKTESKNH", "length": 2005, "header": "tr|A0A9J7F5V8-1|A0A9J7F5V8_CRIGR Isoform 1 of Zinc finger C3H1 domain-containing protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfc3h1 PE=4 SV=1 CANONICAL=A0A9J7F5V8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V8/entry", "sequence": { "sequence": "MATADPSTPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSTSSSGGGLLPYPRRRPPHPPRGGGSGGGGGSSSSSSSSQQPLRNFSRSRHPSERGHLRGHSSYRPKEPFRTHPPPVRMPSGSLSESSPRPSFWERSHIALDRFRFRGRPYRGGSRWSRGRGVGERGGKPGCRPPPGGGGGGGGGGAGSGFGGGGGGGSSSSSQSWREPSPPRKSSKSFGRSPSRKQNHSSKSENCGEETFEDLLLKYKQIQLELECINKDEKLALSSKEEHVQEDAKTLHFEDQTSTDNASITKDSSKEVAPEEKTQVKTFQAFELKPLRQKLTLPGDKNRLKRVKDGTKQLSLKSSTTDSSQGLEDKEQNLTRRISTSDILSEKKLGEDEEELSELQLRLLALQSASKKWQQKEQQVMKESKEKLTKTKAVQQKTKTSTKAHSAKKVSTTAKQALRKQQTKAWKKLQQQKEQERQKEEDQRKQAEEEERRKREEEIRKIRDLSNQEEQYNRFMKLVGGKRRSRSKSSDPDLRRSLDKQPDSGGGIYQYDNYEEVAMDTDSETSSPAPSPVQPPFFSECSLGYFSSAPSVSLPPPAQVSSVPSLSQPYGEGLCVSLEPLPPPPPLPPLPPEDPEQPPKPPFADEEEEEEMLLREELLKSLANKRAFKPEEASSNSDPPSPPVLNNSQPLSRSNLSIVSINTVSQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESDGEASKATNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKIEYRLLKEEIANREKQRLIKSDQLKTNSSSPANSDVEMDGISRIAMVTKQVADAEAKLKKHKILLIKDESVLKNLVLQEAKKKESVRNAEAKITKLTEQLQAAEKILSVNRVFLKKLQEQIHRVQQRVTIKKALTLKYGEELARAKAVASKELGKRKLEQDRLGPNKMMRFDNSPISSPRKHSAELIAMEKRRLQKLEYEYALKIQKLKEARALKAKEQQNLVAVVEEEAEFSLPQPSLHDLTQDKLTLDTEENEVDDEVSSGSNRERRRSFLESNAFTKPNLKHTDTPNKECINKLSKSTVEKPELFLGLKIGELQKLYSKADSLKQLISKTTTGITEKTLHGQEISVDVDFLTAQSKTTEVKPCPFRPYQSPLLVFKSYRFSPYYRTKEKLPLSSVSYSNMIEPEQCFCRFDLTGTCNDDDCQWQHVQDYTLSRKQLFQDILSYDLSLIGCSETSTDEEVASATEKYVEKLFGVNKDRMSMDQMAVLLVSNVNESKGHTPPFTTYKDKRKWKPKFCRKPVSENSFSSDDEQSAGPIQYAFRPENQINVPALDTVVTPDDVRYFTSETDDIANLEASVLENPSHVQLWLKLAYKCLNQNEGLCSESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAIEYAPDYQSFWTFLHLESTFEEKDYVCERMVQFLMGAAKQELSDILSFQLLEALLFRVQLHIFTGRCQSALAILQNALKLANDAIVAEYLKTDDRCLAWLAYIHLIEFNSLPSKLYDPSNANPSRIVNTEPFVMPWQSVQDVKTNPDLLLAVFEDAVKACTDESLSSGERIEVCLPLYTNMIALHQLLERYEAAVELCKSLLESCPANCQLLETLAALYLKTDQYDKARMVWLTAFENNCQNAEVFYHLCKFFILQNQGDNLLPFLRQFIASFFKPGFEKYSNVDLFRYLLNIPGPLDIPACLCKGNFDDDVSNNQVPYLWLIYCLCHPLQSSIKDTVEAYEAALGVAMRSDIVQKIWMDYLVFANNRAAGSRNKVQEFKFFTDLVNRCLVTVPARYPIPFSSADYWSNYEFHNRVIFFYLSCVPKTQHSKTLERFCSIMPTNSRLALRLLQHEWEESNVQILKLQAKMFTYNIPTCLATWKIAIAAEIVLKGQKEVHRLYQRALQKLPLCASLWKDQLLFEASEGGKTDNLRKLVSKCQEIGVSLNELLNLNSNKTESKNH", "length": 2005, "header": "tr|A0A9J7F5V8-1|A0A9J7F5V8_CRIGR Isoform 1 of Zinc finger C3H1 domain-containing protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfc3h1 PE=4 SV=1 CANONICAL=A0A9J7F5V8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 8, "start_aa": "Thr", "end_pos": 8, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr8", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5V8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5V8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763088", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763088", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5V8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V8" } ], "pmid": "" }, { "name": "exosome (RNase complex)", "id": "GO:0000178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000178", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5V8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA processing", "id": "GO:0006396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006396", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5V8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1286, "end_pos": 1288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1998, "end_pos": 2000, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 685, "end_pos": 687, "annotation": "n_glycosylation_sequon" }, { "start_pos": 728, "end_pos": 730, "annotation": "n_glycosylation_sequon" }, { "start_pos": 818, "end_pos": 820, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F5V8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5V8" }, { "id": "PF10650", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10650" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Putative zinc-finger", "eco_id": "ECO_0000259", "start_pos": 1201, "end_pos": 1220, "start_aa": "Phe", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 8 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1286, "end_pos": 1288 }, { "start_pos": 1998, "end_pos": 2000 }, { "start_pos": 229, "end_pos": 231 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 363, "end_pos": 365 }, { "start_pos": 676, "end_pos": 678 }, { "start_pos": 685, "end_pos": 687 }, { "start_pos": 728, "end_pos": 730 }, { "start_pos": 818, "end_pos": 820 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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}, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F5Z3-1", "uniprot_ac": "A0A9J7F5Z3", "uniprot_id": "A0A9J7F5Z3_CRIGR", "mass": { "chemical_mass": 27414.0, "monoisotopic_mass": 27414.0 }, "refseq": { "ac": "XP_027249326", "name": "LOW QUALITY PROTEIN: 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249326" }, "gene_names": [ { "name": "LOC113833179", "type": "recommended", "evidence": [ { "id": "A0A9J7F5Z3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3" } ] }, { "name": "LOC113833179", "type": "synonym", "evidence": [ { "id": "XP_027249326", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249326" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027249326", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249326" }, { "id": "A0A9J7F5Z3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249326", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249326" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833179", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3", "locus": {} } ], "crossref": [ { "id": "113833179", "url": "https://www.ncbi.nlm.nih.gov/gene/113833179", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833179", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833179", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5Z3", "url": "https://www.orthodb.org/?gene=A0A9J7F5Z3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43245", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43245", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43245:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43245:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249326", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249326", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSATGTQNLLEAYVQACVPAFIYTSTTEVVGPNSYKDIVLNGNEEEQHETTWSHSYPYSKKMAEKAVLAANGSTLKNGDTFHTCALRPIYIXGEKSPFISNTMIRALKNNGILDITGKFSTANPVYVSNVAWAHILAARGLQDPKKSPIIQGQFYYISDDTPHQSYDDLNYALSKKWGLHLDSSWRPPLPLLFWLLLSAYFPWKAANTVHQRNWFEYLYLPLNPILAFQRNSRVLESGLLIP", "length": 243, "header": "tr|A0A9J7F5Z3-1|A0A9J7F5Z3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113833179 PE=3 SV=1 CANONICAL=A0A9J7F5Z3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3/entry", "sequence": { "sequence": "MVSATGTQNLLEAYVQACVPAFIYTSTTEVVGPNSYKDIVLNGNEEEQHETTWSHSYPYSKKMAEKAVLAANGSTLKNGDTFHTCALRPIYIXGEKSPFISNTMIRALKNNGILDITGKFSTANPVYVSNVAWAHILAARGLQDPKKSPIIQGQFYYISDDTPHQSYDDLNYALSKKWGLHLDSSWRPPLPLLFWLLLSAYFPWKAANTVHQRNWFEYLYLPLNPILAFQRNSRVLESGLLIP", "length": 243, "header": "tr|A0A9J7F5Z3-1|A0A9J7F5Z3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113833179 PE=3 SV=1 CANONICAL=A0A9J7F5Z3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F5Z3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z3" }, { "id": "PF01073", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01073" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "3-beta hydroxysteroid dehydrogenase/isomerase", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 187, "start_aa": "Val", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"XP_027248763", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248763" } ] } ], "protein_names": [ { "name": "FH2 domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_027248763", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248763" }, { "id": "A0A9J7F5Z4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248763" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5Z4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fhdc1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z4", "locus": {} } ], "crossref": [ { "id": "100760893", "url": "https://www.ncbi.nlm.nih.gov/gene/100760893", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015425", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015425", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760893", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760893", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5Z4", "url": "https://www.orthodb.org/?gene=A0A9J7F5Z4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46345", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46345", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46345:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46345:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248763", "url": 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"MHVMNCVSLASDKENGTLATAAAFMTGQTSPSASPPPPPPPPPPPPCPHSGEGFFPSPPPPLPPPLPGGPLIPPPPPGLPPVAQVNGYSSLGKKKRMRSFFWKTIPEEQVRGKTNIWTLAAKQQQHYQIDKKTIEELFGQQEDTSKASLPRRGGALNSSFRDAREEVTVLDAKRSMNIGIFLKQFKKSPQSIVEDIHQGKSEHYGSEMLREILKLLPESEEVKKLKTFNGDASKLSLADSFLYCLIQVPNYSLRIEAMVLKKEFLPSCSSLFKDITILRTATKELMLCEELHSILHLVLQAGNIMNAGGYAGNAVGFKLSSLLKLADTKANKPGMNLLHFVAQEAQKQDAKLLHFSEKLQHVQETSRLSLDVTEAELYSLSVRTKSLQENIQWDQELFQQMEDFLQFAVEKLSELELLKRELQGEAHTLIDFFCEDKETMKLDECFQIFRDFCTRFNKAVKDNHDREEQERKQLQRLKELEQKRYSWTTGELGGFGRSSSENDVQMLANKGTEDLPSFLKPRPTSPSYRPPNTRRSRLSLGISADRELLTFLESATSSPEDPNKFNSLPRSSPRQARPIIAWMEPREQKNHDPNFAHEPQASQNQEKAPSFAWQSQLPTPQRAEPASPFPLARRGRVSILRKRNSEPVGLGPTQSPPLLPLDLGIREHELVTGLAQFDLQSPNCLEEASQLTLNDFCPTKLQSPGDQSSQSFDTVSDSLTPKDTVPQEVLSPAGENNEAGSDEHSSEALVSVVVTDTEDKDPGPVLYVSDTTDCSLTLDYSEGTDSRPGGEEQEEEREGGGSVSSGAGETGSSQISNPASSPPGELSAPNSSKSEPSCQGGLPKDRSSKGKDAIAPKRNSLKEASPGVSKPASVRRSQGAAPKPVRTLNSSENEHMRKVVPISKSSRGAGPWKRPELTSRASPRETPSSTDTLLSRRSSVRGTSDTSPKRPHVTGPGAEEPRLPRSSGSISGRPGKEAPVQPRASFRKPSAKPLRNIPRQKPEENKVSSPNSEDPESSKEEPKVPQTPGVSRALPPVPSFARNTVASSSRCMRTDAPPASRAPGITRTVSQRQLRVKGGPEDSASKDSGTLKRASSARASKKCPESSGGTSANAETPLKGRGTSERASLKLKDSGRATIGRILHPLQK", 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"MHVMNCVSLASDKENGTLATAAAFMTGQTSPSASPPPPPPPPPPPPCPHSGEGFFPSPPPPLPPPLPGGPLIPPPPPGLPPVAQVNGYSSLGKKKRMRSFFWKTIPEEQVRGKTNIWTLAAKQQQHYQIDKKTIEELFGQQEDTSKASLPRRGGALNSSFRDAREEVTVLDAKRSMNIGIFLKQFKKSPQSIVEDIHQGKSEHYGSEMLREILKLLPESEEVKKLKTFNGDASKLSLADSFLYCLIQVPNYSLRIEAMVLKKEFLPSCSSLFKDITILRTATKELMLCEELHSILHLVLQAGNIMNAGGYAGNAVGFKLSSLLKLADTKANKPGMNLLHFVAQEAQKQDAKLLHFSEKLQHVQETSRLSLDVTEAELYSLSVRTKSLQENIQWDQELFQQMEDFLQFAVEKLSELELLKRELQGEAHTLIDFFCEDKETMKLDECFQIFRDFCTRFNKAVKDNHDREEQERKQLQRLKELEQKRYSWTTGELGGFGRSSSENDVQMLANKGTEDLPSFLKPRPTSPSYRPPNTRRSRLSLGISADRELLTFLESATSSPEDPNKFNSLPRSSPRQARPIIAWMEPREQKNHDPNFAHEPQASQNQEKAPSFAWQSQLPTPQRAEPASPFPLARRGRVSILRKRNSEPVGLGPTQSPPLLPLDLGIREHELVTGLAQFDLQSPNCLEEASQLTLNDFCPTKLQSPGDQSSQSFDTVSDSLTPKDTVPQEVLSPAGENNEAGSDEHSSEALVSVVVTDTEDKDPGPVLYVSDTTDCSLTLDYSEGTDSRPGGEEQEEEREGGGSVSSGAGETGSSQISNPASSPPGELSAPNSSKSEPSCQGGLPKDRSSKGKDAIAPKRNSLKEASPGVSKPASVRRSQGAAPKPVRTLNSSENEHMRKVVPISKSSRGAGPWKRPELTSRASPRETPSSTDTLLSRRSSVRGTSDTSPKRPHVTGPGAEEPRLPRSSGSISGRPGKEAPVQPRASFRKPSAKPLRNIPRQKPEENKVSSPNSEDPESSKEEPKVPQTPGVSRALPPVPSFARNTVASSSRCMRTDAPPASRAPGITRTVSQRQLRVKGGPEDSASKDSGTLKRASSARASKKCPESSGGTSANAETPLKGRGTSERASLKLKDSGRATIGRILHPLQK", "length": 1148, "header": "tr|A0A9J7F5Z4-1|A0A9J7F5Z4_CRIGR Isoform 1 of FH2 domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Fhdc1 PE=4 SV=1 CANONICAL=A0A9J7F5Z4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 653, "start_aa": "Thr", "end_pos": 653, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr653", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FA40-1", "uniprot_ac": "A0A9J7FA40", "uniprot_id": "A0A9J7FA40_CRIGR", "mass": { "chemical_mass": 61656.0, "monoisotopic_mass": 61656.0 }, "refseq": { "ac": "XP_027251962", "name": "PHD finger protein 21B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251962" }, "gene_names": [ { "name": "Phf21b", "type": "recommended", "evidence": [ { "id": "A0A9J7FA40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40" } ] }, { "name": "Phf21b", "type": "synonym", "evidence": [ { "id": "XP_027251962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251962" } ] } ], "protein_names": [ { "name": "PHD finger protein 21B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027251962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251962" }, { "id": "A0A9J7FA40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027251962.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251962" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Phf21b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40", "locus": {} } ], "crossref": [ { "id": "A0A9J7FA40", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FA40", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760051", "url": "https://www.ncbi.nlm.nih.gov/gene/100760051", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760051", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760051", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FA40", "url": "https://www.orthodb.org/?gene=A0A9J7FA40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24102", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24102", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24102:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24102:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251962", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F617", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F617", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F617-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F617-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8D1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8D1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8D1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9U5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFARHGLAVFTWLFVRPPSPGTHTHTHSHPHPGLQTCTARGAPPGGLGPRPAPGAAPMRRQPQNGDLKKQLHERQPRIAALSDKQALGTTTAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQALTEPTAITSPLSSAGVAYAIISTSPSNAATITPSTTVPVASDSIKVQPLLISADKKVIIIQPQVQTQSQSSAEPQPPTEEPSQGAQATKEDQPSSQENPEKIAFMVALGLVTTEHLEGTYAEECVPVPSSSYLILILKPPEPCYKQLLKALTCPDPLGNEPVTAVSAFHIQKSRASVRSGRGGARLTPPIAASWRPRGSGWPPAISTTPCSLQHESEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTAPKGVWVCPKCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQTEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQMLQVAMATTSPTPLLAGTWTKPSTTTMRTALQHPQSHN", "length": 576, "header": "tr|A0A9J7FA40-1|A0A9J7FA40_CRIGR Isoform 1 of PHD finger protein 21B isoform X4 OS=Cricetulus griseus OX=10029 GN=Phf21b PE=4 SV=1 CANONICAL=A0A9J7FA40-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F617-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F617/entry", "sequence": { "sequence": "MSFARHGLAVFTWLFVRPPSPGTHTHTHSHPHPGLQTCTARGAPPGGLGPRPAPGAAPMRRQPQNGDLKKQLHERQPRIAALSDKQALGTTTAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQALTEPTAITSPLSSAGVAYAIISTSPSNAATITPSTTVPVASDSIKVQPLLISADKKVIIIQPQVQTQSQSSAEPQPPTEEPSQGAQATKEDQPSSQENPEKIAFMVALGLVTTEHLEGTYAEECVPVPSSSYLILILKPPEPCYKQLLKALTCPDPLGNEPVTAVSAFHIQKSRASVRSGRGGARLTPPIAASWRPRGSGWPPAISTTPCSLQHEALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQTEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQMLQVAMATTSPTPLLAGTWTKPSTTTMRTALQHPQSHN", "length": 523, "header": "tr|A0A9J7F617-1|A0A9J7FA40_CRIGR Computationally mapped isoform of PHD finger protein 21B isoform X4 OS=Cricetulus griseus OX=10029 GN=Phf21b PE=4 SV=1 CANONICAL=A0A9J7FA40-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8D1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8D1/entry", "sequence": { "sequence": "MELQSRSEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTTTAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQALTEPTAITSPLSSAGVAYAIISTSPSNAATITPSTTVPVASDSIKVQPLLISADKKVIIIQPQVQTQSQSSAEPQPPTEEPSQGAQATKEDQPSSQENPEKIAFMVALGLVTTEHLEGTYAEECVPVPSSSYLILILKPPEPCYKQLLKALTCPDPLGNEPVTAVSAFHIQKSRASVRSGRGGARLTPPIAASWRPRGSGWPPAISTTPCSLQHESEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTAPKGVWVCPKCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQTEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQMLQVAMATTSPTPLLAGTWTKPSTTTMRTALQHPQSHN", "length": 530, "header": "tr|A0A9J7F8D1-1|A0A9J7F8D1_CRIGR Computationally mapped isoform of PHD finger protein 21B isoform X5 OS=Cricetulus griseus OX=10029 GN=Phf21b PE=4 SV=1 CANONICAL=A0A9J7FA40-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FA40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40/entry", "sequence": { "sequence": "MSFARHGLAVFTWLFVRPPSPGTHTHTHSHPHPGLQTCTARGAPPGGLGPRPAPGAAPMRRQPQNGDLKKQLHERQPRIAALSDKQALGTTTAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQALTEPTAITSPLSSAGVAYAIISTSPSNAATITPSTTVPVASDSIKVQPLLISADKKVIIIQPQVQTQSQSSAEPQPPTEEPSQGAQATKEDQPSSQENPEKIAFMVALGLVTTEHLEGTYAEECVPVPSSSYLILILKPPEPCYKQLLKALTCPDPLGNEPVTAVSAFHIQKSRASVRSGRGGARLTPPIAASWRPRGSGWPPAISTTPCSLQHESEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTAPKGVWVCPKCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQTEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQMLQVAMATTSPTPLLAGTWTKPSTTTMRTALQHPQSHN", "length": 576, "header": "tr|A0A9J7FA40-1|A0A9J7FA40_CRIGR Isoform 1 of PHD finger protein 21B isoform X4 OS=Cricetulus griseus OX=10029 GN=Phf21b PE=4 SV=1 CANONICAL=A0A9J7FA40-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB99/entry", "sequence": { "sequence": "MSFARHGLAVFTWLFVRPPSPGTHTHTHSHPHPGLQTCTARGAPPGGLGPRPAPGAAPMRRQPQNGDLKKQLHERQPRIAALSDKQALGTTTAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQALTEPTAITSPLSSAGVAYAIISTSPSNAATITPSTTVPVASDSIKVQPLLISADKKVIIIQPQVQTQSQSSAEPQPPTEEPSQGAQATKEDQPSSQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGFLETERKRLASSYLHNPLFLTARANEDPCWKSEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTAPKGVWVCPKCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQTEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQMLQVAMATTSPTPLLAGTWTKPSTTTMRTALQHPQSHN", "length": 530, "header": "tr|A0A9J7FB99-1|A0A9J7FB99_CRIGR Computationally mapped isoform of PHD finger protein 21B isoform X8 OS=Cricetulus griseus OX=10029 GN=Phf21b PE=4 SV=1 CANONICAL=A0A9J7FA40-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9U5/entry", "sequence": { "sequence": "MELQSRSEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTTTAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQALTEPTAITSPLSSAGVAYAIISTSPSNAATITPSTTVPVASDSIKVQPLLISADKKVIIIQPQVQTQSQSSAEPQPPTEEPSQGAQATKEDQPSSQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGFLETERKRLASSYLHNPLFLTARANEDPCWKSEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTAPKGVWVCPKCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQTEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQSSLDRLRALLRLIQGEQMLQVAMATTSPTPLLAGTWTKPSTTTMRTALQHPQSHN", "length": 484, "header": "tr|A0A9J7J9U5-1|A0A9J7J9U5_CRIGR Computationally mapped isoform of PHD finger protein 21B isoform X7 OS=Cricetulus griseus OX=10029 GN=Phf21b PE=4 SV=1 CANONICAL=A0A9J7FA40-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 131, "start_aa": "Thr", "end_pos": 131, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr131", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F617", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F617" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F617", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F617" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760051", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760051", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FA40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA40" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 397, "end_pos": 444, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 131 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007644530", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644530" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F661", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C1H12orf73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661", "locus": {} } ], "crossref": [ { "id": "A0A9J7F661", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F661", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773036", "url": "https://www.ncbi.nlm.nih.gov/gene/100773036", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773036", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773036", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F661", "url": "https://www.orthodb.org/?gene=A0A9J7F661", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JAV8", "url": "https://www.orthodb.org/?gene=A0A9J7JAV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28492", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28492", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28492:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28492:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14990", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14990", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007644530", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644530", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F661", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F661-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAV8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRQDGAVTRSRMAKAWKRSRQNKSRKIKTLRLTAGRNTRMRTRAHFPRFPLRRGAGPLHFGSGPWRSAPYRAGTSGRPGPVHSPLCTMPGGVPWSAYLKMLSSSLLAMCAGAQVVHWYYRPDLVMLSSKRPQSEGQCNLHVPSTSHQHQLAFQLLECYIRCHDAFP", "length": 166, "header": "tr|A0A9J7F661-1|A0A9J7F661_CRIGR Isoform 1 of Uncharacterized protein C12orf73 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H12orf73 PE=3 SV=1 CANONICAL=A0A9J7F661-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F661-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661/entry", "sequence": { "sequence": "MRQDGAVTRSRMAKAWKRSRQNKSRKIKTLRLTAGRNTRMRTRAHFPRFPLRRGAGPLHFGSGPWRSAPYRAGTSGRPGPVHSPLCTMPGGVPWSAYLKMLSSSLLAMCAGAQVVHWYYRPDLVMLSSKRPQSEGQCNLHVPSTSHQHQLAFQLLECYIRCHDAFP", "length": 166, "header": "tr|A0A9J7F661-1|A0A9J7F661_CRIGR Isoform 1 of Uncharacterized protein C12orf73 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H12orf73 PE=3 SV=1 CANONICAL=A0A9J7F661-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAV8/entry", "sequence": { "sequence": "MRTRAHFPRFPLRRGAGPLHFGSGPWRSAPYRAGTSGRPGPVHSPLCTMPGGVPWSAYLKMLSSSLLAMCAGAQVVHWYYRPDLTIPEIPPKPGELRTELLGLKEKHHKPQVSQQ", "length": 115, "header": "tr|A0A9J7JAV8-1|A0A9J7JAV8_CRIGR Computationally mapped isoform of Uncharacterized protein C12orf73 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=C1H12orf73 PE=3 SV=1 CANONICAL=A0A9J7F661-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F661", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773036", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773036", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F661", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial respiratory chain complex III assembly", "id": "GO:0034551", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034551", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F661", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F661" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FAI0-1", "uniprot_ac": "A0A9J7FAI0", "uniprot_id": "A0A9J7FAI0_CRIGR", "mass": { "chemical_mass": 22448.0, "monoisotopic_mass": 22448.0 }, "refseq": { "ac": "XP_027252147", "name": "YY1-associated factor 2 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252147" }, "gene_names": [ { "name": "LOC100760251", "type": "recommended", "evidence": [ { "id": "A0A9J7FAI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAI0" } ] }, { "name": "LOC100760251", "type": "synonym", "evidence": [ { "id": "XP_027252147", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252147" } ] } ], "protein_names": [ { "name": "YY1-associated factor 2 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027252147", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252147" }, { "id": "A0A9J7FAI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAI0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252147" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAI0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760251", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAI0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FAI0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FAI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760251", "url": "https://www.ncbi.nlm.nih.gov/gene/100760251", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033774", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033774", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760251", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760251", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F698", "url": "https://www.orthodb.org/?gene=A0A9J7F698", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FAI0", "url": "https://www.orthodb.org/?gene=A0A9J7FAI0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K5Q2", "url": "https://www.orthodb.org/?gene=A0A9J7K5Q2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12920", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12920", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12920:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12920:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00641", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00641", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17219", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17219", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252147", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MTW5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MTW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F698", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F698", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F698-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F698-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAI0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5Q2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDKKSPTRPKRQPKPASDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRSTFFEAIANASRTKGPLSLYCAYRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKEATSKKNCHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKAKSAPASSAAAGDQHSQSSCSSDNTERGVSRSSSPRGEASSLNGESH", "length": 204, "header": "tr|A0A9J7FAI0-1|A0A9J7FAI0_CRIGR Isoform 1 of YY1-associated factor 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100760251 PE=4 SV=1 CANONICAL=A0A9J7FAI0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MTW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTW5/entry", "sequence": { "sequence": "MGDKKSPTRPKRQPKPASDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKEATSKKNCHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKAKSAPASSAAAGDQHSQSSCSSDNTERGVSRSSSPRGEASSLNGESH", "length": 180, "header": "tr|A0A8C2MTW5-1|A0A8C2MTW5_CRIGR Computationally mapped isoform of YY1-associated factor 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100760251 PE=4 SV=1 CANONICAL=A0A9J7FAI0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F698-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F698/entry", "sequence": { "sequence": "MTVSFGSIFDPHSLKLLRMPRGPRDRCNPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKEATSKKNCHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKAKSAPASSAAAGDQHSQSSCSSDNTERGVSRSSSPRGEASSLNGESH", "length": 162, "header": "tr|A0A9J7F698-1|A0A9J7FAI0_CRIGR Computationally mapped isoform of YY1-associated factor 2 isoform X6 OS=Cricetulus 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OS=Cricetulus griseus OX=10029 GN=Smap1 PE=4 SV=1 CANONICAL=A0A9J7F6H1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MVG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVG9/entry", "sequence": { "sequence": "MATRSCREKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTPEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAITNKEKEKKKEEKKREKEPEKPAKPLTTEKLQKKEDQQLEPKKSTSPKNAAEPTVDLLGLDGPAEAPVTNGSTTTVPPLNDDLDIFGPMISNPLPATVMPPAQGTSSVPAAATLSTVTPGDLDLFTEQTTKSEEVAKKQLSKDSILSLYGTGTQQSTPGVFMGPTNIPFTSQAATAFQGFPSMGVPVPAAPGLIGNMMGQNTSMMVGMPMPNGFMGNAQTGVMQLPQNVVGPQGGMVGQMGAPQSKFGLPQSQQPQWNLSQMNQQMAGMSLSNVNPTAGFGQPPSTTAGWSGSSSGQTLSTQLWK", "length": 440, "header": "tr|A0A8C2MVG9-1|A0A8C2MVG9_CRIGR Computationally mapped isoform of Stromal membrane-associated protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Smap1 PE=4 SV=1 CANONICAL=A0A9J7F6H1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6H1/entry", "sequence": { 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Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252309", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252309" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB07", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB07" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Troap", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB07", "locus": {} } ], "crossref": [ { "id": "A0A9J7FB07", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FB07", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768889", "url": "https://www.ncbi.nlm.nih.gov/gene/100768889", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026133", 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6H7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB07", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB07-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGCDVTRLASAETSQSQGWRILQTGEAAAAETQKIGEKAERVEVTPRGSWRAAMTTLHTRKEPLLRGVSPTPSKIPVLSQRCPDFSSVKSCSQDRENQDPRRLSQKVSTPHPLIGSAAPRSKTLHHTEKSQKLGITRLRNPLEELKPSCGGANVEHVSHTQTEASGAIEFVADPAALATILSGEGVKSCPLGRQSSLAQRVLVRGSKGGTTQKGKGARSSAYLAPRTPIHQLDPARASCFSRLEGSGSRGHTLFPQRIETLSLPSGSSHPTTRPSLQEIRRETCDNSRTSANQASRLLLKTPVQPGECVWIWEKEKKARASELPAPGTRQGKGQQVLSNSGVRKQGEHEAVPHSDERGRALLGLAQRVPLRGTGERMHTRTSYSSLKQLTIRPKTQCTPLRSLPRVQQTQWLSGLSPHSSPEEPAMPWEQIAVRLFDQEGCITLQKGSGKPSVASTSGPHPSKTPNHQELKMQRISLLQQLLQQEIEGLAVDKCAPLNGGSALEMTKLQPLLADISKTLSAPEHNSGTSLLGLSKHSGVTEPYLAEECEEPQPHLAEKHGEPQACTGKETKVVQPSSTTEPQPPVPCWIAGPEQLDPCLPALPGPLLPSSQGQAGSLEACPRIELGPSAAYSLEASNPESSPQPCCSQGPPATTSLTFSSQSSLCARPPIHSLQPLRSPAGQSGPSSLAPRTLALRQRLRACLTAIHCFHEARLDDECAFYTSRTPPPGPTRVCTNPVATLLEWQDALRFIPVGSVVPQASPS", "length": 764, "header": "tr|A0A9J7FB07-1|A0A9J7FB07_CRIGR Isoform 1 of Tastin isoform X5 OS=Cricetulus griseus OX=10029 GN=Troap PE=4 SV=1 CANONICAL=A0A9J7FB07-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F6H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6H7/entry", "sequence": { "sequence": "MAGCDVTRLASAETSQSQGWRILQTGEAAAAETQKIGEKAERVEVTPRGSWRAAMTTLHTRKEPLLRGVSPTPSKIPVLSQRCPDFSSVKSCSQDRENQDPRRLSQKVSTPHPLIGSAAPRSKTLHHTEKSQKLGITRLRNPLEELKPSCGGANVEHVSHTQTEASGAIEFVADPAALATILSGEGVKSCPLGRQSSLAQRVLVRGSKGGTTQKGKGARSSAYLAPRTPIHQLDPARASCFSRLEGSGSRGHTLFPQRIETLSLPSGSSHPTTRPSLQEIRRETCDNSRTSANQASRLLLKTPVQPGECVWIWEKEKKARASELPAPGTRQGKGQQVLSNSGVRKQGEHEAVPHSDERGRALLGLAQRVPLRGTGERMHTRTQWLSGLSPHSSPEEPAMPWEQIAVRLFDQEGCITLQKGSGKPSVASTSGPHPSKTPNHQELKMQRISLLQQLLQQEIEGLAVDKCAPLNGGSALEMTKLQPLLADISKTLSAPEHNSGTSLLGLSKHSGVTEPYLAEECEEPQPHLAEKHGEPQACTGKETKVVQPSSTTEPQPPVPCWIAGPEQLDPCLPALPGPLLPSSQGQAGSLEACPRIELGPSAAYSLEASNPESSPQPCCSQGPPATTSLTFSSQSSLCARPPIHSLQPLRSPAGQSGPSSLAPRTLALRQRLRACLTAIHCFHEARLDDECAFYTSRTPPPGPTRVCTNPVATLLEWQDALRFIPVGSVVPQASPS", "length": 736, "header": "tr|A0A9J7F6H7-1|A0A9J7FB07_CRIGR Computationally mapped isoform of Tastin isoform X5 OS=Cricetulus griseus OX=10029 GN=Troap PE=4 SV=1 CANONICAL=A0A9J7FB07-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB07-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB07/entry", "sequence": { "sequence": "MAGCDVTRLASAETSQSQGWRILQTGEAAAAETQKIGEKAERVEVTPRGSWRAAMTTLHTRKEPLLRGVSPTPSKIPVLSQRCPDFSSVKSCSQDRENQDPRRLSQKVSTPHPLIGSAAPRSKTLHHTEKSQKLGITRLRNPLEELKPSCGGANVEHVSHTQTEASGAIEFVADPAALATILSGEGVKSCPLGRQSSLAQRVLVRGSKGGTTQKGKGARSSAYLAPRTPIHQLDPARASCFSRLEGSGSRGHTLFPQRIETLSLPSGSSHPTTRPSLQEIRRETCDNSRTSANQASRLLLKTPVQPGECVWIWEKEKKARASELPAPGTRQGKGQQVLSNSGVRKQGEHEAVPHSDERGRALLGLAQRVPLRGTGERMHTRTSYSSLKQLTIRPKTQCTPLRSLPRVQQTQWLSGLSPHSSPEEPAMPWEQIAVRLFDQEGCITLQKGSGKPSVASTSGPHPSKTPNHQELKMQRISLLQQLLQQEIEGLAVDKCAPLNGGSALEMTKLQPLLADISKTLSAPEHNSGTSLLGLSKHSGVTEPYLAEECEEPQPHLAEKHGEPQACTGKETKVVQPSSTTEPQPPVPCWIAGPEQLDPCLPALPGPLLPSSQGQAGSLEACPRIELGPSAAYSLEASNPESSPQPCCSQGPPATTSLTFSSQSSLCARPPIHSLQPLRSPAGQSGPSSLAPRTLALRQRLRACLTAIHCFHEARLDDECAFYTSRTPPPGPTRVCTNPVATLLEWQDALRFIPVGSVVPQASPS", "length": 764, "header": "tr|A0A9J7FB07-1|A0A9J7FB07_CRIGR Isoform 1 of Tastin isoform X5 OS=Cricetulus griseus OX=10029 GN=Troap PE=4 SV=1 CANONICAL=A0A9J7FB07-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBG1/entry", "sequence": { "sequence": "MAGCDVTRLASAETSQSQGWRILQTGEAAAAETQKIGEKAERVEVTPRGSWRAAMTTLHTRKEPLLRGVSPTPSKIPVLSQRCPDFSSVKSCSQDRENQDPRRLSQKVSTPHPLIGSAAPRSKTLHHTEKSQKLGITRLRNPLEELKPSCGGANVEHVSHTQTEASGAIEFVADPAALATILSGEGVKSCPLGRQSSLAQRVLVRGSKGGTTQKGKGARSSAYLAPRTPIHQLDPARASCFSRLEGSGSRGHTLFPQRIETLSLPSGSSHPTTRPSLQEIRRETCDNSRTSANQASRLLLKTPVQPEHEAVPHSDERGRALLGLAQRVPLRGTGERMHTRTSYSSLKQLTIRPKTQCTPLRSLPRVQQTQWLSGLSPHSSPEEPAMPWEQIAVRLFDQEGCITLQKGSGKPSVASTSGPHPSKTPNHQELKMQRISLLQQLLQQEIEGLAVDKCAPLNGGSALEMTKLQPLLADISKTLSAPEHNSGTSLLGLSKHSGVTEPYLAEECEEPQPHLAEKHGEPQACTGKETKVVQPSSTTEPQPPVPCWIAGPEQLDPCLPALPGPLLPSSQGQAGSLEACPRIELGPSAAYSLEASNPESSPQPCCSQGPPATTSLTFSSQSSLCARPPIHSLQPLRSPAGQSGPSSLAPRTLALRQRLRACLTAIHCFHEARLDDECAFYTSRTPPPGPTRVCTNPVATLLEWQDALRFIPVGSVVPQASPS", "length": 723, "header": "tr|A0A9J7FBG1-1|A0A9J7FBG1_CRIGR Computationally mapped isoform of Tastin isoform X6 OS=Cricetulus griseus OX=10029 GN=Troap PE=4 SV=1 CANONICAL=A0A9J7FB07-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDK3/entry", "sequence": { "sequence": "MAGCDVTRLASAETSQSQGWRILQTGEAAAAETQKIGEKAERVEVTPRGSWRAAMTTLHTRKEPLLRGVSPTPSKIPVLSQRCPDFSSVKSCSQDRENQDPRRLSQKVSTPHPLIGSAAPRSKTLHHTEKSQKLGITRLRNPLEELKPSCGGANVEHVSHTQTEASGAIEFVADPAALATILSGEGVKSCPLGRQSSLAQRVLVRGSKGGTTQKGKGARSSAYLAPRTPIHQLDPARASCFSRLEGSGSRGHTLFPQRIETLSLPSGSSHPTTRPSLQEIRRETCDNSRTSANQASRLLLKTPVQPEHEAVPHSDERGRALLGLAQRVPLRGTGERMHTRTQWLSGLSPHSSPEEPAMPWEQIAVRLFDQEGCITLQKGSGKPSVASTSGPHPSKTPNHQELKMQRISLLQQLLQQEIEGLAVDKCAPLNGGSALEMTKLQPLLADISKTLSAPEHNSGTSLLGLSKHSGVTEPYLAEECEEPQPHLAEKHGEPQACTGKETKVVQPSSTTEPQPPVPCWIAGPEQLDPCLPALPGPLLPSSQGQAGSLEACPRIELGPSAAYSLEASNPESSPQPCCSQGPPATTSLTFSSQSSLCARPPIHSLQPLRSPAGQSGPSSLAPRTLALRQRLRACLTAIHCFHEARLDDECAFYTSRTPPPGPTRVCTNPVATLLEWQDALRFIPVGSVVPQASPS", "length": 695, "header": "tr|A0A9J7JDK3-1|A0A9J7JDK3_CRIGR Computationally mapped isoform of Tastin isoform X4 OS=Cricetulus griseus OX=10029 GN=Troap PE=4 SV=1 CANONICAL=A0A9J7FB07-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 732, "start_aa": "Thr", "end_pos": 732, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr732", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6H7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6H7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6H7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6H7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768889", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768889", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 72, 732 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F6L0-1", "uniprot_ac": "A0A9J7F6L0", "uniprot_id": "A0A9J7F6L0_CRIGR", "mass": { "chemical_mass": 190616.0, "monoisotopic_mass": 190616.0 }, "refseq": { "ac": "XP_027249195", "name": "trichohyalin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249195" }, "gene_names": [ { "name": "Tchh", "type": "recommended", "evidence": [ { "id": "A0A9J7F6L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0" } ] }, { "name": "Tchh", "type": "synonym", "evidence": [ { "id": "XP_027249195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249195" } ] } ], "protein_names": [ { "name": "Trichohyalin", "type": "synonym", "evidence": [ { "id": "A0A9J7F6L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0/entry#names_and_taxonomy" } ] }, { "name": "trichohyalin", "type": "synonym", "evidence": [ { "id": "XP_027249195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249195" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249195", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249195" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tchh", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0", "locus": {} } ], "crossref": [ { "id": "cd00213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118237655", "url": "https://www.ncbi.nlm.nih.gov/gene/118237655", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118237655", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237655", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F6L0", "url": "https://www.orthodb.org/?gene=A0A9J7F6L0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34855", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34855", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34855:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34855:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249195", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249195", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F6L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"A0A9J7F6L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F6L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L0" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": 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{ "id": "A0A9J7F6L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L3" } ] }, { "name": "Sycp1", "type": "synonym", "evidence": [ { "id": "XP_027249321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249321" } ] } ], "protein_names": [ { "name": "Synaptonemal complex protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F6L3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L3/entry#names_and_taxonomy" } ] }, { "name": "synaptonemal complex protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027249321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249321" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249321", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249321" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6L3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sycp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6L3", "locus": {} } ], "crossref": [ { "id": "A0A9J7F6L3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F6L3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752914", "url": "https://www.ncbi.nlm.nih.gov/gene/100752914", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008827", 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}, { "id": "XP_027252593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252593", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F6V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2C7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERKAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLIFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQVLGTDNGPAFVSQLIYRPSN", "length": 457, "header": "tr|A0A9J7F6V9-1|A0A9J7F6V9_CRIGR Isoform 1 of Uncharacterized protein LOC113833581 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833581 PE=4 SV=1 CANONICAL=A0A9J7F6V9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F6V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9/entry", "sequence": { "sequence": "MIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERKAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLIFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQVLGTDNGPAFVSQLIYRPSN", "length": 457, "header": "tr|A0A9J7F6V9-1|A0A9J7F6V9_CRIGR Isoform 1 of Uncharacterized protein LOC113833581 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833581 PE=4 SV=1 CANONICAL=A0A9J7F6V9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBU1/entry", "sequence": { "sequence": "MIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERKAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQTPFQDGLKPSLLNMKQPRSLLRNCLKKSFPVMGCLRYWEQTMGPPSSPSSFTGPPTSTTGGLETPCSSL", "length": 416, "header": "tr|A0A9J7FBU1-1|A0A9J7FBU1_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113833581 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113833581 PE=4 SV=1 CANONICAL=A0A9J7F6V9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2C7/entry", "sequence": { "sequence": "MIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERKAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQLIYRPSN", "length": 354, "header": "tr|A0A9J7K2C7-1|A0A9J7K2C7_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113833581 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC113833581 PE=4 SV=1 CANONICAL=A0A9J7F6V9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833581", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833581", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA integration", "id": "GO:0015074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015074", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F6V9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" }, { "id": "PS50994", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrase catalytic", "eco_id": "ECO_0000259", "start_pos": 372, "end_pos": 457, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F6V9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6V9" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 250, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 359, "end_pos": 361 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F6Z6-1", "uniprot_ac": "A0A9J7F6Z6", "uniprot_id": "A0A9J7F6Z6_CRIGR", "mass": { "chemical_mass": 134660.0, "monoisotopic_mass": 134660.0 }, "refseq": { "ac": "XP_027250936", "name": "leucine-rich repeat-containing protein 53 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250936" }, "gene_names": [ { "name": "Lrrc53", "type": "recommended", "evidence": [ { "id": "A0A9J7F6Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z6" } ] }, { "name": "Lrrc53", "type": "synonym", "evidence": [ { "id": "XP_027250936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250936" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat-containing protein 53 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F6Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z6/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 53 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027250936", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250936" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 27% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250936", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250936" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6Z6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z6", "locus": {} } ], "crossref": [ { "id": "A0A9J7F6Z6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F6Z6", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833444", "url": "https://www.ncbi.nlm.nih.gov/gene/113833444", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833444", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833444", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F6Z6", "url": "https://www.orthodb.org/?gene=A0A9J7F6Z6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250936", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250936", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F6Z6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252692" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F705", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F705" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gtf3c3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F705", "locus": {} } ], "crossref": [ { "id": "A0A9J7F705", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F705", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759578", "url": "https://www.ncbi.nlm.nih.gov/gene/100759578", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F705", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F705" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759578", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759578", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "transcription factor TFIIIC complex", "id": "GO:0000127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000127", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F705", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F705" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transcription by RNA polymerase III", "id": "GO:0006383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006383", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F705", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F705" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 859, "end_pos": 861, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 }, { "start_pos": 859, "end_pos": 861 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FBH2-1", "uniprot_ac": "A0A9J7FBH2", "uniprot_id": "A0A9J7FBH2_CRIGR", "mass": { "chemical_mass": 131186.0, "monoisotopic_mass": 131186.0 }, "refseq": { "ac": "XP_027252683", "name": "coiled-coil domain-containing protein 150 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252683" }, "gene_names": [ { "name": "LOC100763560", "type": "recommended", "evidence": [ { "id": "A0A9J7FBH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBH2" } ] }, { "name": "LOC100763560", "type": "synonym", "evidence": [ { "id": "XP_027252683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252683" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 150 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7FBH2", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252683", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252683" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBH2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763560", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBH2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763560", "url": "https://www.ncbi.nlm.nih.gov/gene/100763560", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"length": 1127, "header": "tr|A0A9J7F710-1|A0A9J7FBH2_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 150 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100763560 PE=4 SV=1 CANONICAL=A0A9J7FBH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C1/entry", "sequence": { "sequence": "MNLRQQLKNVKEEEDKAQDEVQRLTATLEIASETKKNAAVIEEELKTTKRKMNLKIQELRKQLAQEKHFRESIEKSASSMLLKIQEMGSTVEAERKQVHTLQQNCTALHDSIQTTQELLAQEQQKNGELEMITSQLKSDLMSRDNFICKLVEENKSTKMSFSKEHEDNTYLKSEIISLRDISEKTKVLNEQLSTKCSELTNMLRIVKMENARVIAEHNAILQVEQKMITETFQEQNLLLDAAHASITSELQTVQNDRAQLQTHLDHLILEHSQCLQKAQDAEKKTMVQKELLESTIARLRGELEASLQEKSSLLEEKERFQQEVSKTEKEVQEKCNLEKELAKSKVDINALNQNLQSLVEENKHLTDKIASLEHHRATSDYHGFAQKKVEKALEKITDSKNKLAYEKGKLQTKIKQLEEQLHSFTETKLQNDHLHKLNKVLQVKHAQANSELSVSKAYLQQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLRGDLETLEDRESKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARLLIVEAQHNSEMEPLQKSLDITREDNRKLALSLEQALQTNGHLQSKLDHIQEKLENKEVERQNLEAFKARVAEESKVEAELHAERIEALRKQFQTERETSKKAAQREVSELKKALDEANIRSVEVSRTNRELRQKLMELEKVVNSNKEKLKNQKAQIKLHLSAKANNVQNLERMKQIETELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNNLQKEMELLAKSQYETSARNKQQELRLIAERKMRQELENRCAEFEETIRHLKRCKEATENKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTKNRLQRLPREDRWPEENQDRSRDIASSQSVLHRWETKQNLGLMSKKYHSDTERKKCP", "length": 950, "header": "tr|A0A9J7F9C1-1|A0A9J7F9C1_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 150 isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC100763560 PE=4 SV=1 CANONICAL=A0A9J7FBH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB13/entry", "sequence": { "sequence": "MCHLENLIQSLKMSICRLQTEQELNPQKTAFLKDQLNTIQEEHSTDLNLLHLEVMNLRQQLKNVKEEEDKAQDEVQRLTATLEIASETKKNAAVIEEELKTTKRKMNLKIQELRKQLAQEKHFRESIEKSASSMLLKIQEMGSTVEAERKQVHTLQQNCTALHDSIQTTQELLAQEQQKNGELEMITSQLKSDLMSRDNFICKLVEENKSTKMSFSKEHEDNTYLKSEIISLRDISEKTKVLNEQLSTKCSELTNMLRIVKMENARVIAEHNAILQVEQKMITETFQEQNLLLDAAHASITSELQTVQNDRAQLQTHLDHLILEHSQCLQKAQDAEKKTMVQKELLESTIARLRGELEASLQEKSSLLEEKERFQQEVSKTEKEVQEKCNLEKELAKSKVDINALNQNLQSLVEENKHLTDKIASLEHHRATSDYHGFAQKKVEKALEKITDSKNKLAYEKGKLQTKIKQLEEQLHSFTETKLQNDHLHKLNKVLQVKHAQANSELSVSKAYLQQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLRGDLETLEDRESKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARLLIVEAQHNSEMEPLQKSLDITREDNRKLALSLEQALQTNGHLQSKLDHIQEKLENKEVERQNLEAFKARVAEESKVEAELHAERIEALRKQFQTERETSKKAAQREVSELKKALDEANIRSVEVSRTNRELRQKLMELEKVVNSNKEKLKNQKAQIKLHLSAKANNVQNLERMKQIETELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNNLQKEMELLAKSQYETSARNKQQELRLIAERKMRQELENRCAEFEETIRHLKRCKEATENKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTKNRLQRLPREDRWPEENQDRSRDIASSQSVLHRWETKQNLGLMSKKYHSDTERKKCP", "length": 1004, "header": "tr|A0A9J7FB13-1|A0A9J7FB13_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 150 isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC100763560 PE=4 SV=1 CANONICAL=A0A9J7FBH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB73/entry", "sequence": { "sequence": 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"length": 1040, "header": "tr|A0A9J7FB73-1|A0A9J7FB73_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 150 isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC100763560 PE=4 SV=1 CANONICAL=A0A9J7FBH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBH2/entry", "sequence": { "sequence": 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"tr|A0A9J7FC80-1|A0A9J7FC80_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 150 isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100763560 PE=4 SV=1 CANONICAL=A0A9J7FBH2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDU4/entry", "sequence": { "sequence": "METNLLAPRRSYRLVDGLGARLPGQMRMETTVRRPVLSPTHINATASETFTVLQEKMRIVEEQTSSLRDDLIMLGYGDKRGQLETSHYFEDPASQKVISPIRSEVICPDKTDILWKNCEFLVNRMCHLENLIQSLKMSICRLQTEQELNPQKTAFLKDQLNTIQEEHSTDLNLLHLEVMNLRQQLKNVKEEEDKAQDEVQRLTATLEIASETKKNAAVIEEELKTTKRKMNLKIQELRKQLAQEKHFRESIEKSASSMLLKIQEMGSTVEAERKQVHTLQQNCTALHDSIQTTQELLAQEQQKNGELEMITSQLKSDLMSRDNFICKLVEENKSTKMSFSKEHEDNTYLKSEIISLRDISEKTKVEQKMITETFQEQNLLLDAAHASITSELQTVQNDRAQLQTHLDHLILEHSQCLQKAQDAEKKTMVQKELLESTIARLRGELEASLQEKSSLLEEKERFQQEVSKTEKEVQEKCNLEKELAKSKVDINALNQNLQSLVEENKHLTDKIASLEHHRATSDYHGFAQKKVEKALEKITDSKNKLAYEKGKLQTKIKQLEEQLHSFTETKLQNDHLHKLNKVLQVKHAQANSELSVSKAYLQQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLRGDLETLEDRESKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARLLIVEAQHNSEMEPLQKSLDITREDNRKLALSLEQALQTNGHLQSKLDHIQEKLENKEVERQNLEAFKARVAEESKVEAELHAERIEALRKQFQTERETSKKAAQREVSELKKALDEANIRSVEVSRTNRELRQKLMELEKVVNSNKEKLKNQKAQIKLHLSAKANNVQNLERMKQIETELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNNLQKEMELLAKSQYETSARNKQQELRLIAERKMRQELENRCAEFEETIRHLKRCKEATENKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTKNRLQRLPREDRWPEENQDRSRDIASSQSVLHRWETKQNLGLMSKKYHSDTERKKCP", "length": 1092, "header": "tr|A0A9J7JDU4-1|A0A9J7JDU4_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 150 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100763560 PE=4 SV=1 CANONICAL=A0A9J7FBH2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 282, "end_pos": 284 }, { "start_pos": 332, "end_pos": 334 }, { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F751-1", "uniprot_ac": "A0A9J7F751", "uniprot_id": "A0A9J7F751_CRIGR", "mass": { "chemical_mass": 16482.0, "monoisotopic_mass": 16482.0 }, "refseq": { "ac": "XP_027249188", "name": "small proline-rich protein 2H isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249188" }, "gene_names": [ { "name": "LOC100754646", "type": "recommended", "evidence": [ { "id": "A0A9J7F751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F751" } ] }, { "name": "LOC100754646", "type": "synonym", "evidence": [ { "id": "XP_027249188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249188" } ] } ], "protein_names": [ { "name": "Small proline-rich protein 2H isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F751/entry#names_and_taxonomy" } ] }, { "name": "small proline-rich protein 2H isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027249188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249188" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249188", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249188" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F751", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F751" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754646", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F751", "locus": {} } ], "crossref": [ { "id": "A0A9J7F751", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F751", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754646", "url": "https://www.ncbi.nlm.nih.gov/gene/100754646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754646", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754646", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF14820", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14820", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249188", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249188", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F751", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F751", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F751-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F751-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYQQQQCKQPCQPPPVCPPPKCPEPCPPPKCPEPYPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPQPCQQKCPPVQPPPSCQQKCPPKSK", "length": 153, "header": "tr|A0A9J7F751-1|A0A9J7F751_CRIGR Isoform 1 of Small proline-rich protein 2H isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754646 PE=3 SV=1 CANONICAL=A0A9J7F751-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F751-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F751/entry", "sequence": { "sequence": "MSYQQQQCKQPCQPPPVCPPPKCPEPCPPPKCPEPYPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPPKCPEPCPPQPCQQKCPPVQPPPSCQQKCPPKSK", "length": 153, "header": "tr|A0A9J7F751-1|A0A9J7F751_CRIGR Isoform 1 of Small proline-rich protein 2H isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754646 PE=3 SV=1 CANONICAL=A0A9J7F751-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251247", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251247" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7E0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7E0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc16a4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7E0", "locus": {} } ], "crossref": [ { "id": "A0A9J7F7E0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F7E0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764919", "url": "https://www.ncbi.nlm.nih.gov/gene/100764919", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764919", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764919", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F7E0", "url": "https://www.orthodb.org/?gene=A0A9J7F7E0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251247", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251247", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F7E0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7E0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7E0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMKMEEKALPYARTLDGGWGWMIVLHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFSAGPLAAIICDILGEKTTSILGTFLVSGGYLVSSWATGIPFLCVTMGLLPGLGSAFLYQVAAVVITKYFRKRLGLSTAIARSGMGLTFLLAPFTQFLIDLYDWTGALTLFGAIALNLVPSSMLLRPIHMPTENNSDIKNKGSSLSTTEPEVSDMIETSYCNETSSIQGTSMKKSGQPTKNLTVLENQSEEFSNGPRRNRVILMSNDKSYQKKLVSWNCKQNLLDISLFKNPFFYIFTWSFLLSQIAYFIPTFHLVARAKTLGIDVMDASYLVSIAGITETASQLISGWIADQNWIKKYQYHKLYLILCGITNLLAPLATTFPLLMAYTIFFAIFAGGYLALILPVLVDLSKNSRVHKFLGYASFFAGMAVLSGPPIAGWIYDYTQTYTGSFYFSGTCYLLSSVSLFFVPLAERWKSKQSELRRTTIK", "length": 498, "header": "tr|A0A9J7F7E0-1|A0A9J7F7E0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: monocarboxylate transporter 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc16a4 PE=4 SV=1 CANONICAL=A0A9J7F7E0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F7E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7E0/entry", "sequence": { "sequence": "MMKMEEKALPYARTLDGGWGWMIVLHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFSAGPLAAIICDILGEKTTSILGTFLVSGGYLVSSWATGIPFLCVTMGLLPGLGSAFLYQVAAVVITKYFRKRLGLSTAIARSGMGLTFLLAPFTQFLIDLYDWTGALTLFGAIALNLVPSSMLLRPIHMPTENNSDIKNKGSSLSTTEPEVSDMIETSYCNETSSIQGTSMKKSGQPTKNLTVLENQSEEFSNGPRRNRVILMSNDKSYQKKLVSWNCKQNLLDISLFKNPFFYIFTWSFLLSQIAYFIPTFHLVARAKTLGIDVMDASYLVSIAGITETASQLISGWIADQNWIKKYQYHKLYLILCGITNLLAPLATTFPLLMAYTIFFAIFAGGYLALILPVLVDLSKNSRVHKFLGYASFFAGMAVLSGPPIAGWIYDYTQTYTGSFYFSGTCYLLSSVSLFFVPLAERWKSKQSELRRTTIK", "length": 498, "header": "tr|A0A9J7F7E0-1|A0A9J7F7E0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: monocarboxylate transporter 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc16a4 PE=4 SV=1 CANONICAL=A0A9J7F7E0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027249884.1. 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"https://www.ncbi.nlm.nih.gov/protein/XP_027250134" }, "gene_names": [ { "name": "LOC113833357", "type": "recommended", "evidence": [ { "id": "A0A9J7F7P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P5" } ] }, { "name": "LOC113833357", "type": "synonym", "evidence": [ { "id": "XP_027250134", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250134" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 12-1-like", "type": "synonym", "evidence": [ { "id": "A0A9J7F7P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P5/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 12-1-like", "type": "synonym", "evidence": [ { "id": "XP_027250134", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250134" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250134", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250134" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833357", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P5", "locus": {} } ], "crossref": [ { "id": "A0A9J7F7P5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F7P5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833357", "url": "https://www.ncbi.nlm.nih.gov/gene/113833357", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113833357", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833357", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F7P5", "url": "https://www.orthodb.org/?gene=A0A9J7F7P5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027250134", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250134", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F7P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCQASCSSGCQPACCVSSPCQPACVPLSCRPAICVPVRCQVTCCVPVNCRPTVCMAPSCQSSVCVPVSCRPVCVTSTCQSSGCCQPSCPTLVYRPVSCNTPSCC", "length": 104, "header": "tr|A0A9J7F7P5-1|A0A9J7F7P5_CRIGR Isoform 1 of Keratin-associated protein 12-1-like OS=Cricetulus griseus OX=10029 GN=LOC113833357 PE=4 SV=1 CANONICAL=A0A9J7F7P5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F7P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P5/entry", "sequence": { "sequence": "MCQASCSSGCQPACCVSSPCQPACVPLSCRPAICVPVRCQVTCCVPVNCRPTVCMAPSCQSSVCVPVSCRPVCVTSTCQSSGCCQPSCPTLVYRPVSCNTPSCC", "length": 104, "header": "tr|A0A9J7F7P5-1|A0A9J7F7P5_CRIGR Isoform 1 of Keratin-associated protein 12-1-like OS=Cricetulus griseus OX=10029 GN=LOC113833357 PE=4 SV=1 CANONICAL=A0A9J7F7P5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253235", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253235" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCY2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100750637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCY2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCY2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15626", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15626", "database": "CDD", "categories": [ "Protein 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"MSTEQEDTENNPFKPIFLHFKRLKVSISTAIKKPFPFLEFLRDNELITNKMYDDLQDSCTNLVPLQKVVYRALEELEKRLDMVVLGLLFSDENMKAYPDLELILKSFGNVSQNTFCSQRSDRGDLNSQLSLEQGPGNSCSQGSLPWSPSGPSSSDGWRINDRRNTNHIQENQTEDHQSSSLQIHNVRSLCENGLSEDLLETVQINPLRRDTTGDNTDELERDQATPDAEPEDIKQENSSFVSGREETEASTSHNQASEVIVLSSEDSHDGNNHSGESTPVICQSSPRNPRQHNVDFSSPELPVTCGTAKGILHKKKFEQGIHIKSIRSETGGWLTPMKFEIKGDRGGSKNWRQSIRCCGEPLKKLIEEGKLPNPPRKRGKKQNPPNPRRRTKKKPDISKQCKVCGQGRRLHECAMCKKFYHKRCHIPPEEVKSGLWSCIFCKTKDQLSYQENQARHKESEVLRRKMLPEEQQKCELLLLTIYCHPKSRFFISKPKKRKENFPDIQEHMWLNKIKYRLNRKTYLSVQHFVKDMRLIFWNHRIIYNNCKFSNLGVTVRSLFEKTFKRIFSIEETSN", "length": 574, "header": "tr|A0A9J7F7R8-1|A0A9J7FCY2_CRIGR Computationally mapped isoform of Nuclear autoantigen Sp-100 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100750637 PE=4 SV=1 CANONICAL=A0A9J7FCY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCY2/entry", "sequence": { "sequence": "MSTEQEDTENNPFKPIFLHFKRLKVSISTAIKKPFPFLEFLRDNELITNKMYDDLQDSCTNLVPLQKVVYRALEELEKRLDMVVLGLLFSDENMKAYPDLELILKSFGNVSQNTFCSQRSDRGDLNSQLSLEQGPGNSCSQGSLPWSPSGPSSSDGWRINDRRNTNHIQENQTEDHQSSSLQIHNVRSLCENGLSEDLLETVQINPLRRDTTGDNTDELERDQATPDAEPEGAEQRSQGTQVYPCSVHLIDIKQENSSFVSGREETEASTSHNQASEVIVLSSEDSHDGNNHSGESTPVICQSSPRNPRQHNVDFSSPELPVTCGTAKGILHKKKFEQGIHIKSIRSETGGWLTPMKFEIKGDRGGSKNWRQSIRCCGEPLKKLIEEGKLPNPPRKRGKKQNPPNPRRRTKKKPDISKQCKVCGQGRRLHECAMCKKFYHKRCHIPPEEVKSGLWSCIFCKTKDQLSYQENQARHKESEVLRRKMLPEEQQKCELLLLTIYCHPKSRFFISKPKKRKENFPDIQEHMWLNKIKYRLNRKTYLSVQHFVKDMRLIFWNHRIIYNNCKFSNLGVTVRSLFEKTFKRIFSIEETSN", "length": 593, "header": "tr|A0A9J7FCY2-1|A0A9J7FCY2_CRIGR Isoform 1 of Nuclear autoantigen Sp-100 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100750637 PE=4 SV=1 CANONICAL=A0A9J7FCY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ85/entry", "sequence": { "sequence": "MVVLGLLFSDENMKAYPDLELILKSFGNVSQNTFCSQRSDRGDLNSQLSLEQGPGNSCSQGSLPWSPSGPSSSDGWRINDRRNTNHIQENQTEDHQSSSLQIHNVRSLCENGLSEDLLETVQINPLRRDTTGDNTDELERDQATPDAEPEGAEQRSQGTQVYPCSVHLIDIKQENSSFVSGREETEASTSHNQASEVIVLSSEDSHDGNNHSGESTPVICQSSPRNPRQHNVDFSSPELPVTCGTAKGILHKKKFEQGIHIKSIRSETGGWLTPMKFEIKGDRGGSKNWRQSIRCCGEPLKKLIEEGKLPNPPRKRGKKQNPPNPRRRTKKKPDISKQCKVCGQGRRLHECAMCKKFYHKRCHIPPEEVKSGLWSCIFCKTKDQLSYQENQARHKESEVLRRKMLPEEQQKCELLLLTIYCHPKSRFFISKPKKRKENFPDIQEHMWLNKIKYRLNRKTYLSVQHFVKDMRLIFWNHRIIYNNCKFSNLGVTVRSLFEKTFKRIFSIEETSN", "length": 512, "header": "tr|A0A9J7GQ85-1|A0A9J7GQ85_CRIGR Computationally mapped isoform of Nuclear autoantigen Sp-100 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100750637 PE=4 SV=1 CANONICAL=A0A9J7FCY2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAP5/entry", "sequence": { "sequence": "MSTEQEDTENNPFKPIFLHFKRLKVSISTAIKKPFPFLEFLRDNELITNKMYDDLQDSCTNLVPLQKVVYRALEELEKRLDMVVLGLLFSDENMKAYPDLELILKSFGNVSQNTFCSQRSDRGDLNSQLSLEQGPGNSCSQGSLPWSPSGPSSSDGWRINDRRNTNHIQENQTEDHQSSSLQIHNVRSLCENGLSEDLLETVQINPLRRDTTGDNTDELERDQATPDAEPEGAEQRSQGTQVYPCSVHLIDIKQENSSFVSGREETEASTSHNQASEVIVLSSEDSHDGNNHSGESTPVICQSSPRNPRQHNVDFSSPELPVTCGTAKGILHKKKFEQGIHIKSIRSETGGWLTPMKFEIKGDRGGSKNWRQSIRCCGEPLKKLIEEGKLPNPPRKRGKKQNPPNPRRRTKKKTRHSSLISGVWIPHWMTVKDAEAPGPWTTASDAEISPDDYALELPRMFKHPVLDSSPDSVN", "length": 474, "header": "tr|A0A9J7JAP5-1|A0A9J7JAP5_CRIGR Computationally mapped isoform of Nuclear autoantigen Sp-100 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100750637 PE=4 SV=1 CANONICAL=A0A9J7FCY2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7R8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7R8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7R8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7R8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750637", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750637", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCY2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCY2", "url": 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249816", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249816" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F848", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F848" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klhl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F848", "locus": {} } ], "crossref": [ { "id": "A0A9J7F848", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F848", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18335", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18335", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18509", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18509", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772180", "url": "https://www.ncbi.nlm.nih.gov/gene/100772180", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772180", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772180", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F848", "url": "https://www.orthodb.org/?gene=A0A9J7F848", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF74", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF74", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249816", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249816", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F848", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F848", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F848-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F848-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F870-1", "uniprot_ac": "A0A9J7F870", "uniprot_id": "A0A9J7F870_CRIGR", "mass": { "chemical_mass": 79390.0, "monoisotopic_mass": 79390.0 }, "refseq": { "ac": "XP_003499417", "name": "transmembrane protein 232", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499417" }, "gene_names": [ { "name": "Tmem232", "type": "recommended", "evidence": [ { "id": "A0A9J7F870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870" } ] }, { "name": "Tmem232", "type": "synonym", "evidence": [ { "id": "XP_003499417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499417" } ] } ], "protein_names": [ { "name": "Transmembrane protein 232", "type": "synonym", "evidence": [ { "id": "A0A9J7F870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 232", "type": "synonym", "evidence": [ { "id": "XP_003499417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499417" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613732.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003499417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499417" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F870", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem232", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870", "locus": {} } ], "crossref": [ { "id": "100757866", "url": "https://www.ncbi.nlm.nih.gov/gene/100757866", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757866", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757866", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DHHWQEE", "url": "https://omabrowser.org/oma/group/DHHWQEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F870", "url": "https://www.orthodb.org/?gene=A0A9J7F870", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28651", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28651", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28651:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28651:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15877", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15877", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003499417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499417", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F870", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F870-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVDKSPSINKFGVISSTYYEELLKFNLESTNRKKNHKPKPSFSISKEFILKFNNTQNPSEQEELLEQARKLLARCKRKLGLKTLGSGKYVHLPSAWAEIIYLAQCKGEIQDEALNMLHASLDQVSFNSDQLPALFFLAESVLYRLCCDAFLKGFLYSVELKLVKIGYLIFLRLFVFFLHGHLESFKQHLLRLQPYLYALYFSEVSYHKYPNVFSNVQFILKVSEIICKKELHSETVVGNTGGIEGVFSDLEHMALDQGGYEVNQLLWHCVAAWSCVQNNSPQLNEVLEHLLFHKTKLQTKCWLDSVLALMVLGEAAKLNLACLKTLMGLVKDFILSIFSVDNQRESYEEYDLSWASDVIFIYTTIISEVCLYAATSYLRKTALIGFCDCPSLQKDALLMNKSEVQPELEGMSILSLLKYFSSKMSINCAKLIWVGYYGIVYNMVKMSWELQGDEEQDGLRNLIWKTLQNIKDYEQDPRIQIALTVAQAELNEQVDPFTRYSRKATPNLGEEVFSKYIGWRVSSTLSKLFFPSPNSCALSSKTSEISLQRKGTAKTQAFATKKDIHFVVKDHSSELDICMFPYPDFFTKADKKLAEIIDHHWQKDMEIRKQEEAEYEEQRQKEEEIKEKVRFQEIMKQRQKKLNKQTKPYEIPWLEKKDGPGKESGFRGQETKTLPKLRGRKASLELT", "length": 688, "header": "tr|A0A9J7F870-1|A0A9J7F870_CRIGR Isoform 1 of Transmembrane protein 232 OS=Cricetulus griseus OX=10029 GN=Tmem232 PE=4 SV=1 CANONICAL=A0A9J7F870-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F870-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870/entry", "sequence": { "sequence": "MPVDKSPSINKFGVISSTYYEELLKFNLESTNRKKNHKPKPSFSISKEFILKFNNTQNPSEQEELLEQARKLLARCKRKLGLKTLGSGKYVHLPSAWAEIIYLAQCKGEIQDEALNMLHASLDQVSFNSDQLPALFFLAESVLYRLCCDAFLKGFLYSVELKLVKIGYLIFLRLFVFFLHGHLESFKQHLLRLQPYLYALYFSEVSYHKYPNVFSNVQFILKVSEIICKKELHSETVVGNTGGIEGVFSDLEHMALDQGGYEVNQLLWHCVAAWSCVQNNSPQLNEVLEHLLFHKTKLQTKCWLDSVLALMVLGEAAKLNLACLKTLMGLVKDFILSIFSVDNQRESYEEYDLSWASDVIFIYTTIISEVCLYAATSYLRKTALIGFCDCPSLQKDALLMNKSEVQPELEGMSILSLLKYFSSKMSINCAKLIWVGYYGIVYNMVKMSWELQGDEEQDGLRNLIWKTLQNIKDYEQDPRIQIALTVAQAELNEQVDPFTRYSRKATPNLGEEVFSKYIGWRVSSTLSKLFFPSPNSCALSSKTSEISLQRKGTAKTQAFATKKDIHFVVKDHSSELDICMFPYPDFFTKADKKLAEIIDHHWQKDMEIRKQEEAEYEEQRQKEEEIKEKVRFQEIMKQRQKKLNKQTKPYEIPWLEKKDGPGKESGFRGQETKTLPKLRGRKASLELT", "length": 688, "header": "tr|A0A9J7F870-1|A0A9J7F870_CRIGR Isoform 1 of Transmembrane protein 232 OS=Cricetulus griseus OX=10029 GN=Tmem232 PE=4 SV=1 CANONICAL=A0A9J7F870-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F870", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F870", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F870" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757866", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757866", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9RVT9-1", "protein_name": "Transmembrane protein 232", "gene_name": "TMEM232", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPNKSPVIGKSEVVSSSYEKSKPPFSITKEFILRFNQTKNPKEEEELLDIARKNIIKCKRKLGLRTLGMGRHVHLPDAWTQVVYLAQCRGEVQDEALNMLYASLDHAVFDCDHLPALFFVAESVLYRLCCDAFQKAYLYSVEIKLAKIGYLVFLRLFIYFLHGHLENFKQHLLRLQPYLYALSCSKELYWMYPNISSNVQCILKIMEIICKRELPSESIFRPVEDKNTDSAMEHLQLNEKGYEISHLLWHCVSAWTCVQKNSPQLNKVLEHLISRKTQLQKKSWLDLALALLVLGEAARLNMACLKAFMDLMRDFLLSIMSVQNQDKSCEVDDSSWAQNVVTIYIKILAEICLYATNSVLRKTALIGFCDCKSSQKDILLVDKSQEEPELRETSISGLLEYFSSETSDCCDQVKWAGRYSLLYNLVKMSWELRGDKEQDGLRNKIWQMLQKTKDREKDGRICNAVNIAQAEINDPTDPFTSNSTKVSSNIGDESFSKYIGWRIASVLSKLFFPSVDACVLPLKRPLMKRYQRRDVNKMQGSMKKRVLCFTVREYSSVAEAPLFPYPDFFTRADRELARIVDHHWQEEQKMRQEEDAICEAEERKDKELQEQNRLREIMKRREEKLHKQTKPYELPPRIKTFP", "length": 642 }, "evidence": [ { "id": "A0A9J7F870", "url": "https://omabrowser.org/oma/group/A0A9J7F870/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B1WBT0-1", "protein_name": "Transmembrane protein 232", "gene_name": "Tmem232", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKKWPSFSVTKEFILRFNNTDNRVKEEELLEQARKFTVRCKRKLGLKTLGSGKHVHLPTAWAEVIYLAQCKGEIQDEALNMLYASLDHVSFDCDQLPTLFFLAESVLYRLCCDAFKKEYLYSVEIKLVKIGYLIFLRLFVFFLHGHLENFKQHLLRLQPYLYALYYSEPSYYKYPNILSSLQFILKTAEIICKRELHFEVFESLREVEDPFSDTNHVQLNKRGYEVNHLLWHSVAAWSCVQDNRPQLNAVLDHILFHKAQLQTKCWLDSALALLVLGEAAKLNMACLKTLMDLMTHFLLSPQSQEDYCSIYDIPWASDIVFIYTSIIAEVCLYAATSDLRKTALIGFCVCKDPQQDIHLTNKSEEMPELDGASILTLLKYFSSRISDNCAKVIWVGYYGIVYNLVKMSWELQGDEEQDGFRNMVWQTLQKIKDYEEDPRIQNAVTIAQAELNDAADPFSSKAAPNSEAFSKYIGWRIANTLSRLFFPSLDVSALPQKTPVETDLQRKHTISKRQPEKKGVVRIVMKEHPSVLELSMFPYPDFFTKADKKLEEVIDHHWQKDMETLKQIEAVCEAQNRKDEEEKEKIRFQEIMKQRERKLNKQTKPYEITPSEKKE", "length": 617 }, "evidence": [ { "id": "A0A9J7F870", "url": "https://omabrowser.org/oma/group/A0A9J7F870/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C9JQI7-1", "protein_name": "Transmembrane protein 232", "gene_name": "TMEM232", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNMPVNKSPMINTCGGISSPYHEELWKLNFQHLSGERGHKSRPTFSITKEFILRFNQTQNSKEKEELLELARKIILRCKRKLGLKTLGSGRHVHLPAAWTEVIYLAQCKGEIQDESLNMLYASLDHASFDYDHLPALFFVAESVLYRLCCDASLKTYLYSVEIKLAKIGYLVFLRLFIFFLHGHLESFKQHLLRLQPYLYALSFSGASYHKYPNIFSNVQFILKASEIIGKRELRSESIFRPVEDKKRYENTDSDMGGYEINHLLWHCVAAWSCVQNNSPQLNNVLEHLVFHKTQLQKKCWLDSVLALLVLGEAAKLNMACLKALMDVVRDFVSSIMSVQNQEESCKVDDFSWAWNVVYIYTVILAEICLYAATSDLRKTALIGFCHCKSSQKNILYLDKSVPPELKETSILSLLEYFSSKMSENCDQVVWTGYYGLVYNLVKISWELQGDEEQDGLRNMIWQTLQKTKDYEEDVRIQNAINIAQAELNDPTDPFTRYSTNISSNVGEEVFSKYIGWRIANTLSKLFFPPIEAHFLPLKKPSIKKDQTKYPNKKLESVKKQVLHFTVREHPSVSEIPMFPYPDFFTKADKELAKIIDHHWQEELKIREKEDAICKAQELKDKKLAEKNHFQEVMKKREEKLHKQTKPYELPYRKEVI", "length": 657 }, "evidence": [ { "id": "A0A9J7F870", "url": "https://omabrowser.org/oma/group/A0A9J7F870/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5K6N0-1", "protein_name": "Transmembrane protein 232", "gene_name": "Tmem232", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKAYKPPVVNKFGVISSTYHEELLKSIFESSNRRKSQKPKPSFSISKEFILRFNHTDNPAEEEELLEQARRLIVRSKRKLGLKTLGSGKHVHLPTAWAEVIYLAQCKGEIQDEALNMLHASLDHVSFDHDQLPALFFLAESVLYRLCCDAFMKGYLYSVEIKLVKIGYLIFLRLFVFFLHGHLESFKQHLLRLQPYLYALHFSEPSYYKYPNIISNVQFILKTSEIICKRELHSEPFVESPDETEDPYSDLNHLQLNKRGYEVNHLLWHSVAAWSCVQNNRPQLTEVLEHLLFYKTQLQTKCWLDSALALMVLGEAAKLDMACLKTLMDLVTDFLENILSAQNQEENYNIYDTSWASEIVFTYTTIIAEVCLYAATSDLRKTALIGFCACKSPQQGISLTDKSEELPELDGASILTLLKYFSSRISDNCEKVIWIGYYGIVYNLVKMSWELQGEQDQDGLRNMIWQTLQKIKDYEQDPRIRCALVIAQAELNGPSDPFCTKATPNSGEEVFSKYIGWRIATTLSRLFFPSLDVAPPKTPVEVDLPRKHTIRERQPAKKRVLRFILKDHSSVVEVSMTPYPNFFTKADKKLEEIIDHHWQKDMEARKREEEAYKAQNQKDKEEKEKIHFQEIMKQRERKLNKQTKPYEIILSEKESGSEKKCGFFELKPSTAPNAK", "length": 675 }, "evidence": [ { "id": "A0A9J7F870", "url": "https://omabrowser.org/oma/group/A0A9J7F870/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 279, "end_pos": 281, 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513277", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513277" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arsj", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3", "locus": {} } ], "crossref": [ { "id": "A0A9J7F8I3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F8I3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16029", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16029", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752184", "url": "https://www.ncbi.nlm.nih.gov/gene/100752184", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752184", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752184", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MYSTQMY", "url": "https://omabrowser.org/oma/group/MYSTQMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F8I3", "url": "https://www.orthodb.org/?gene=A0A9J7F8I3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10342", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10342", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10342:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10342:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513277", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513277", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRDRAEAEAPPPPRGWAWPGKIVAMGALAGFWVLSLLTYGYLCWGQSLEEKGPLKTQAAERPEAGSTGTSQPHLIFILADDQGFRDVGYHGSEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTKRGFDTFFGSLLGSGDYYTHYKCDSPGMCGYDLYENDNAAWDYDNGIYSTQMYTQRVQQILASHDPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIVNINRRRYAAMLSCLDEAIHNVTLALKRYGFYNNSIIIYSSDNGGQPMAGGSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQAFSNLGPNRWHNERITLSTGKSIWLFNITADPYERVDLSGRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYKEENKKKKTNKTKAEKKQKKSKPGTRKQLTVHSSTKCHPSVTTG", "length": 597, "header": "tr|A0A9J7F8I3-1|A0A9J7F8I3_CRIGR Isoform 1 of Arylsulfatase J OS=Cricetulus griseus OX=10029 GN=Arsj PE=3 SV=1 CANONICAL=A0A9J7F8I3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3/entry", "sequence": { "sequence": "MAPRDRAEAEAPPPPRGWAWPGKIVAMGALAGFWVLSLLTYGYLCWGQSLEEKGPLKTQAAERPEAGSTGTSQPHLIFILADDQGFRDVGYHGSEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTKRGFDTFFGSLLGSGDYYTHYKCDSPGMCGYDLYENDNAAWDYDNGIYSTQMYTQRVQQILASHDPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIVNINRRRYAAMLSCLDEAIHNVTLALKRYGFYNNSIIIYSSDNGGQPMAGGSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQAFSNLGPNRWHNERITLSTGKSIWLFNITADPYERVDLSGRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYKEENKKKKTNKTKAEKKQKKSKPGTRKQLTVHSSTKCHPSVTTG", "length": 597, "header": "tr|A0A9J7F8I3-1|A0A9J7F8I3_CRIGR Isoform 1 of Arylsulfatase J OS=Cricetulus griseus OX=10029 GN=Arsj PE=3 SV=1 CANONICAL=A0A9J7F8I3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752184", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752184", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XK07-1", "protein_name": "Arylsulfatase family member J", "gene_name": "ARSJ", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARGGCSWPQRLRKGKMLAVGVLAGLSVLSLLTYGYLSWDSLGRGPGEAPAALGEEPGVGAPSSQPHIVFILADDQGFRDVGYHGSEIRTPTLDKLAAEGVKLENYYVQPMCTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNITLPQKLKEVGYSTHMVGKWHLGFYRRECMPTQRGFDTFFGSLLGSGDYYTHFKCDSPGICGYDLYENDNAAWDHDNGIYSTQMYTQKVQQILASHNPRKPIFLYIAYQAVHSPLQAPGKYFEHYRSINNINRRRYAAMLACLDEAINNVTLALKKYGYYDNSIIIYSSDNGGQPMAGGSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGSVCKELVHITDWFPTLITLAEGQIDEDIQLDGYDIWETISEGRRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVNHWKLLTGNPGYSDWVPPQAFSNVGPNRWHNERVSWSAGKTVWLFNITADPYERVDLSAKYPDVVKQLLRRLSQFNKTAVPVRYPPKDPRSNPKLNGGVWGPWFKEDEKKKKSDKSKGANKQKKNKNKKKANRKKGQSLHCRSRLAGG", "length": 589 }, "evidence": [ { "id": "A0A9J7F8I3", "url": "https://omabrowser.org/oma/group/A0A9J7F8I3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1REG3-1", "protein_name": "Arylsulfatase J isoform X1", "gene_name": "arsj", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGSLSTHGQMEKSTFLLTLLTTFSCIVSSTYGTWKSGFQSNLVNNMDKPNSQPHIIFIMVDDQGFRDVGYHGSEIKTPTLDRLAAAGVKLENYYVQPLCSPSRSQLMTGRYQIHTGLQHSIIRPTQPNCLPLENITLPQKLKNAGYSTHMVGKWHLGFYKRACMPTQRGFDTFFGSLLGSGDYYSHYKCDSPGLCGYDLHEGEEAAWEQDRGVYSTIMYTQKAVNILASHNPKRPIFLYLAFQAVHSPLQVPARYLERYKSIPNLHRRKYAAMVSCLDEAVRNLTLALKQYGYYDNMVMVYSSDNGGQPMAGGSNWPLRGSKGSYWEGGIRAVGFVHSPLLVKKGTKSKALIHITDWYPTLVMLGEGTLDENQNLDGYDVWEAISEGRPSPRLDILHNIDPIYTKAKNGSWKAGYGIWNTAVQAALRVGDWKLLTGVPGYSDWIPPQTFSTLLLANRWHNERVSWDRGKSVWLFNITADPYERVDLSRQYPHVVKKMLFKLLRYSKNAVPCRYPPKDYRSNPQYNGGVWGPWYTDDDQDEDDNLLSYDLEQMKSWKKAKRRGKFKRKI", "length": 568 }, "evidence": [ { "id": "A0A9J7F8I3", "url": "https://omabrowser.org/oma/group/A0A9J7F8I3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q32KJ7-1", "protein_name": "Arylsulfatase family, member J", "gene_name": "Arsj", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPRDSAEPLPPLFPQARVWPGKMVAMGALAGFWVLSLITYGYLSWGQDLEEEGSLRAQVEERPEAGTAVTSQPHLIFILADDQGFRDVGYHGSEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKDCMPTKRGFDTFFGSLLGSGDYYTHYKCDSPGVCGYDLYENDNAAWDYDNGIYSTQMYTQRVQQILASHDPTKPLFLYVAYQAVHSPLQAPGRYFEHYRSIININRRRYAAMLSCLDEAIHNVTLALKRYGFYNNSIIIYSSDNGGQPTAGGSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQAFSNLGPNRWHNERITLSTGKSIWLFNITADPYERVDLSSRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYKEESKKKKTNKTKAKKMQKKSKARTRKQRAARSSTKCHPRVTTG", "length": 597 }, "evidence": [ { "id": "A0A9J7F8I3", "url": "https://omabrowser.org/oma/group/A0A9J7F8I3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5FYB0-1", "protein_name": "Arylsulfatase J", "gene_name": "ARSJ", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPRGCAGHPPPPSPQACVCPGKMLAMGALAGFWILCLLTYGYLSWGQALEEEEEGALLAQAGEKLEPSTTSTSQPHLIFILADDQGFRDVGYHGSEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQHSIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKECMPTRRGFDTFFGSLLGSGDYYTHYKCDSPGMCGYDLYENDNAAWDYDNGIYSTQMYTQRVQQILASHNPTKPIFLYIAYQAVHSPLQAPGRYFEHYRSIININRRRYAAMLSCLDEAINNVTLALKTYGFYNNSIIIYSSDNGGQPTAGGSNWPLRGSKGTYWEGGIRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNIDPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQSFSNLGPNRWHNERITLSTGKSVWLFNITADPYERVDLSNRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYKEETKKKKPSKNQAEKKQKKSKKKKKKQQKAVSGSTCHSGVTCG", "length": 599 }, "evidence": [ { "id": "A0A9J7F8I3", "url": "https://omabrowser.org/oma/group/A0A9J7F8I3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BM89-1", "protein_name": "Arylsulfatase J", "gene_name": "Arsj", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"database": "UniProtKB", "id": "A0A9J7F8I3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3" } ], "pmid": "" }, { "name": "sulfuric ester hydrolase activity", "id": "GO:0008484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008484", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" }, { "start_pos": 495, "end_pos": 497, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F8I3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I3" }, { "id": "PF00884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfatase N-terminal", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 386, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 304, "end_pos": 306 }, { "start_pos": 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"https://www.ncbi.nlm.nih.gov/protein/XP_003508158" } ] } ], "protein_names": [ { "name": "Sodium/glucose cotransporter 1", "type": "synonym", "evidence": [ { "id": "A0A9J7F8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6/entry#names_and_taxonomy" } ] }, { "name": "sodium/glucose cotransporter 1", "type": "synonym", "evidence": [ { "id": "XP_003508158", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508158" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614478.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508158", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508158" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769991", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6", "locus": {} } ], "crossref": [ { "id": "A0A9J7F8I6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F8I6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769991", "url": "https://www.ncbi.nlm.nih.gov/gene/100769991", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769991", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769991", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F8I6", "url": "https://www.orthodb.org/?gene=A0A9J7F8I6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11819", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11819", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11819:SF110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11819:SF110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00474", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00474", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508158", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508158", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNHLEKYRGSSFTGNESTVGFSINSTMDTLVMTSYLLLVLFFGLWMGISIYCSSISSSHFMGLAGIGATSGIAVGAFEWNTIFMLFALGWIFVPIYNKAEVVTLPEYLMERFGSLRIHLCFSFFFLLVYVFNRISMEIGFGAMFLKMVWDTDIYQTMLVVLIITGSYTITGGMTAVVYVETLQAAITILGSVLLMFYAFGEVGGYRGLVKKYLVAIPTRTQEGNWTAKTQCYMPRQDAFRIFRSVVSGDIPWPGLILGTTTVSMFYGCADQVTVQRFLAGKNRLHVKAGCLLFGYLKLLPMFLLVMPGMISRILFPDQVACVVPSECQKFCGRGTGCSVLAYPMLVIRVMPSGLKGFMMSTVCASVMSSLTSIFNSSSALFTLNIYTWIRPTATEKELMVAGRFFVIVLLAITIVWIPTIEMVSSETLFEFMQVLKSCLTPSVTAVFLLAVFCKRVNEKGAFWGLILGTSIGIFRLVAEFSYGHTTCEGGRKCPLFICSLHYLYFGFLVFLITLLVVLAISLATKPIADKHLLGLCWSLRNSPQGREALAKALRWKTCSSATLQQGMFGEAQSCFWKSWDLCCGLDKQPSSKIGPDNANEEKPGTSWERLGSSELSADLEALARRIVSRQEEEHKEKLRDWSDTPESPFWKRVVNVSGIILFALLILVHVYFA", "length": 673, "header": "tr|A0A9J7F8I6-1|A0A9J7F8I6_CRIGR Isoform 1 of Sodium/glucose cotransporter 1 OS=Cricetulus griseus OX=10029 GN=LOC100769991 PE=3 SV=1 CANONICAL=A0A9J7F8I6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6/entry", "sequence": { "sequence": "MNHLEKYRGSSFTGNESTVGFSINSTMDTLVMTSYLLLVLFFGLWMGISIYCSSISSSHFMGLAGIGATSGIAVGAFEWNTIFMLFALGWIFVPIYNKAEVVTLPEYLMERFGSLRIHLCFSFFFLLVYVFNRISMEIGFGAMFLKMVWDTDIYQTMLVVLIITGSYTITGGMTAVVYVETLQAAITILGSVLLMFYAFGEVGGYRGLVKKYLVAIPTRTQEGNWTAKTQCYMPRQDAFRIFRSVVSGDIPWPGLILGTTTVSMFYGCADQVTVQRFLAGKNRLHVKAGCLLFGYLKLLPMFLLVMPGMISRILFPDQVACVVPSECQKFCGRGTGCSVLAYPMLVIRVMPSGLKGFMMSTVCASVMSSLTSIFNSSSALFTLNIYTWIRPTATEKELMVAGRFFVIVLLAITIVWIPTIEMVSSETLFEFMQVLKSCLTPSVTAVFLLAVFCKRVNEKGAFWGLILGTSIGIFRLVAEFSYGHTTCEGGRKCPLFICSLHYLYFGFLVFLITLLVVLAISLATKPIADKHLLGLCWSLRNSPQGREALAKALRWKTCSSATLQQGMFGEAQSCFWKSWDLCCGLDKQPSSKIGPDNANEEKPGTSWERLGSSELSADLEALARRIVSRQEEEHKEKLRDWSDTPESPFWKRVVNVSGIILFALLILVHVYFA", "length": 673, "header": "tr|A0A9J7F8I6-1|A0A9J7F8I6_CRIGR Isoform 1 of Sodium/glucose cotransporter 1 OS=Cricetulus griseus OX=10029 GN=LOC100769991 PE=3 SV=1 CANONICAL=A0A9J7F8I6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 69, "start_aa": "Thr", "end_pos": 69, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769991", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769991", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "D-glucose:sodium symporter activity", "id": "GO:0005412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005412", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8I6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 69 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 24, "end_pos": 26 }, { "start_pos": 375, "end_pos": 377 }, { "start_pos": 655, "end_pos": 657 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F8J1-1", "uniprot_ac": "A0A9J7F8J1", "uniprot_id": "A0A9J7F8J1_CRIGR", "mass": { "chemical_mass": 53968.0, "monoisotopic_mass": 53968.0 }, "refseq": { "ac": "XP_027253221", "name": "sp110 nuclear body protein isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253221" }, "gene_names": [ { "name": "LOC100751025", "type": "recommended", "evidence": [ { "id": "A0A9J7F8J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" } ] }, { "name": "LOC100751025", "type": "synonym", "evidence": [ { "id": "XP_027253221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253221" } ] } ], "protein_names": [ { "name": "Sp110 nuclear body protein isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7F8J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1/entry#names_and_taxonomy" } ] }, { "name": "sp110 nuclear body protein isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027253221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253221" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253221", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253221" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751025", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1", "locus": {} } ], "crossref": [ { "id": "A0A9J7F8J1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F8J1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751025", "url": "https://www.ncbi.nlm.nih.gov/gene/100751025", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043563", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043563", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751025", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751025", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F8J1", "url": "https://www.orthodb.org/?gene=A0A9J7F8J1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46386", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46386", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46386:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46386:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01342", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01342", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03172", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03172", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253221", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253221", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5Q5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISGLGNLGDSPASRMLTVTNALKEALLQHFIYTKLDIAYAINKPFPFFEALRDNSFITEKMYKESLQACQNLVPLSKVVHNVLTSLERTFQPSLLMILFSQVNLREYPSLAAIFRSFKNVRTAYEENKRTAHTLPKAPTDPAEGHSFRTLLPLPPPEPSPPSHLSSAPRVCEPREASHQITEILDEQPSPSHTAVPPPGFIREGKTTAESSRDPPRNDKDDSTETPPSPSGSIPVIQDNLTSKAEEEEDSGGQPPGSPGSVQAVKDESPAPNDLELPQEAPSTPANKKAKKKKRCIWSTPKRRHQKKRPPQGVASPGLGVQEKLKVVGQRTPRKGDSTRTLKMVTRSQMAKTKRAQTSRSQEVINGASKTNGIRRPQRMPSLLPKTTQGKSNDDTADFLSPILPVTCGKVKGILFKEKMKQGPSGKCIQNEAGDLLTPREFLIKGGKARSKDWKKTIWCKGKTLRFLEQKGLLLCTSNSNLKKRVTSR", "length": 489, "header": "tr|A0A9J7F8J1-1|A0A9J7F8J1_CRIGR Isoform 1 of Sp110 nuclear body protein isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100751025 PE=4 SV=1 CANONICAL=A0A9J7F8J1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1/entry", "sequence": { "sequence": "MISGLGNLGDSPASRMLTVTNALKEALLQHFIYTKLDIAYAINKPFPFFEALRDNSFITEKMYKESLQACQNLVPLSKVVHNVLTSLERTFQPSLLMILFSQVNLREYPSLAAIFRSFKNVRTAYEENKRTAHTLPKAPTDPAEGHSFRTLLPLPPPEPSPPSHLSSAPRVCEPREASHQITEILDEQPSPSHTAVPPPGFIREGKTTAESSRDPPRNDKDDSTETPPSPSGSIPVIQDNLTSKAEEEEDSGGQPPGSPGSVQAVKDESPAPNDLELPQEAPSTPANKKAKKKKRCIWSTPKRRHQKKRPPQGVASPGLGVQEKLKVVGQRTPRKGDSTRTLKMVTRSQMAKTKRAQTSRSQEVINGASKTNGIRRPQRMPSLLPKTTQGKSNDDTADFLSPILPVTCGKVKGILFKEKMKQGPSGKCIQNEAGDLLTPREFLIKGGKARSKDWKKTIWCKGKTLRFLEQKGLLLCTSNSNLKKRVTSR", "length": 489, "header": "tr|A0A9J7F8J1-1|A0A9J7F8J1_CRIGR Isoform 1 of Sp110 nuclear body protein isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100751025 PE=4 SV=1 CANONICAL=A0A9J7F8J1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GSQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSQ0/entry", "sequence": { "sequence": "MISGLGNLGDSPASRMLTVTNALKEALLQHFIYTKLDIAYAINKPFPFFEALRDNSFITEKMYKESLQACQNLVPLSKVVHNVLTSLERTFQPSLLMILFSQVNLREYPSLAAIFRSFKNVRTAYEENKRTAHTLPKAPTDPAEGHSFRTLLPLPPPEPSPPSHLSSAPRVCEPREASHQITEILDEQPSPSHTAVPPPGFIREGKTTAESSRDPPRNDKDDSTETPPSPSGSIPVIQDNLTSKAEEEEDSGGQPPGSPGSVQVKDESPAPNDLELPQEAPSTPANKKAKKKKRCIWSTPKRRHQKKRPPQGVASPGLGVQEKLKVVGQRTPRKGDSTRTLKMVTRSQMAKTKRAQTSRSQEVINGASKTNGIRRPQRMPSLLPKTTQGKSNDDTADFLSPILPVTCGKVKGILFKEKMKQGPSGKCIQNEAGDLLTPREFLIKGGKARSKDWKKTIWCKGKTLRFLEQKGLLLCTSNSNLKKRVTSR", "length": 488, "header": "tr|A0A9J7GSQ0-1|A0A9J7GSQ0_CRIGR Computationally mapped isoform of Sp110 nuclear body protein isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100751025 PE=4 SV=1 CANONICAL=A0A9J7F8J1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVI5/entry", "sequence": { "sequence": "MISGLGNLGDSPASRMLTVTNALKEALLQHFIYTKLDIAYAINKPFPFFEALRDNSFITEKMYKESLQACQNLVPLSKVVHNVLTSLERTFQPSLLMILFSQVNLREYPSLAAIFRSFKNVRTAYEENKRTAHTLPKAPTDPAEGHSFRTLLPLPPPEPSPPSHLSSAPRVCEPREASHQITEILDEQPSPSHTAVPPPGFIREGKTTAESSRDPPRNDKDDSTETPPSPSGSIPVIQDNLTSKAEEEEDSGGQPPGSPGSVQAVKDESPAPNDLELPQEAPSTPANKKAKKKKRCIWSTPKRRHQKKRPPQGVASPGLGVQEKLKVVGQRTPRKGDSTRTLKMVTRSQMAKTKRAQTSRSQEVINGASKTNGIRRPQRMPSLLPKTTQGKSNDDTADFLSPILPVTCGKVKGILFKEKMKQERTFALHLQQQPQEKGDEQMKS", "length": 444, "header": "tr|A0A9J7JVI5-1|A0A9J7JVI5_CRIGR Computationally mapped isoform of Sp110 nuclear body protein isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100751025 PE=4 SV=1 CANONICAL=A0A9J7F8J1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5Q5/entry", "sequence": { "sequence": "MILFSQVNLREYPSLAAIFRSFKNVRTAYEENKRTAHTLPKAPTDPAEGHSFRTLLPLPPPEPSPPSHLSSAPRVCEPREASHQITEILDEQPSPSHTAVPPPGFIREGKTTAESSRDPPRNDKDDSTETPPSPSGSIPVIQDNLTSKAEEEEDSGGQPPGSPGSVQAVKDESPAPNDLELPQEAPSTPANKKAKKKKRCIWSTPKRRHQKKRPPQGVASPGLGVQEKLKVVGQRTPRKGDSTRTLKMVTRSQMAKTKRAQTSRSQEVINGASKTNGIRRPQRMPSLLPKTTQGKSNDDTADFLSPILPVTCGKVKGILFKEKMKQGPSGKCIQNEAGDLLTPREFLIKGGKARSKDWKKTIWCKGKTLRFLEQKGLLLCTSNSNLKKRVTSR", "length": 393, "header": "tr|A0A9J7K5Q5-1|A0A9J7K5Q5_CRIGR Computationally mapped isoform of Sp110 nuclear body protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751025 PE=4 SV=1 CANONICAL=A0A9J7F8J1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751025", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751025", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8J1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F8J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" }, { "id": "PS51414", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51414" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HSR", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 123, "start_aa": "Asn", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7F8J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8J1" }, { "id": "PS50864", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50864" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAND", "eco_id": "ECO_0000259", "start_pos": 394, "end_pos": 475, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 240, "end_pos": 242 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F8L7-1", "uniprot_ac": "A0A9J7F8L7", "uniprot_id": "A0A9J7F8L7_CRIGR", "mass": { "chemical_mass": 89088.0, "monoisotopic_mass": 89088.0 }, "refseq": { "ac": "XP_027253870", "name": "protocadherin gamma-A6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253870" }, "gene_names": [ { "name": "LOC100756460", "type": "recommended", "evidence": [ { "id": "A0A9J7F8L7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8L7" } ] }, { "name": "LOC100756460", "type": "synonym", "evidence": [ { "id": "XP_027253870", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253870" } ] } ], "protein_names": [ { "name": "Protocadherin gamma-A6", "type": "synonym", "evidence": [ { "id": "A0A9J7F8L7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8L7/entry#names_and_taxonomy" } ] }, { "name": "protocadherin gamma-A6", "type": "synonym", "evidence": [ { "id": "XP_027253870", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253870" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027253870.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253870", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253870" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8L7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8L7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756460", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8L7", "locus": {} } ], "crossref": [ { "id": "A0A9J7F8L7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F8L7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756460", "url": "https://www.ncbi.nlm.nih.gov/gene/100756460", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756460", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F8L7", "url": "https://www.orthodb.org/?gene=A0A9J7F8L7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253870", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253870", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8L7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8L7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8L7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATQQRLPPCCELLLLFNLLWCLWGSEAGQIRYSIPEELDKGSFVGSISKDLGLEPRQLAERGVRIVSRGRSQLFSLNPRSGSLVTAGRIDREELCAQSAPCLVSFNILVEDKLNLYPVEVEIVDINDNAPRFLKEDLEVKILENAAPSSRFLLMGVYDPDVGVNSIQSFKLSGSSHFSVHVQSQAHGPKYPELVLEHTLDREAEAVHHLALIAMDGGDPVRTGMARILVTVVDANDNAPVFTQPIYRVSVPENLPVGTRVLTVNATDQDEGVHAEITYSFVTITEEISQIFCLDRVTGEISTSETLDYEDSKFYELDVEARDQPGLQDRAKVLITILDVNDNAPEVVVTSGSRAIAENAPPGTVIALFQVYDKDSEQNGLVTCSVSESLPFKLEESLDNYFRLVTTTELDREQVSSYNITVTATDRGIPPLSTAKFISLDVSDINDNPPVFSRSSYSVYVPENNPKGISIFSLKAVDSDSEENAEIIYSLTKETLQGTPLSSFLSINSNTGVLYALCSFDYEQFRELNLLVSASDRGKPPLSSIVSLNLFVLDQNDNVPEILYPVLPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVSVQDHGQPSLSATVTLTVAVASSIPDILADLGSLDLPHKSDDSSLTIYLVVAVATVSCIFFAFVMGLLVLRLWHWHKSRPLKATRKDVSNMSTSHFVGIDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYAHTLISQEGCEKNEPLLTQEDSTFCKEEDSLDQMVQ", "length": 811, "header": "tr|A0A9J7F8L7-1|A0A9J7F8L7_CRIGR Isoform 1 of Protocadherin gamma-A6 OS=Cricetulus griseus OX=10029 GN=LOC100756460 PE=4 SV=1 CANONICAL=A0A9J7F8L7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8L7/entry", "sequence": { "sequence": "MATQQRLPPCCELLLLFNLLWCLWGSEAGQIRYSIPEELDKGSFVGSISKDLGLEPRQLAERGVRIVSRGRSQLFSLNPRSGSLVTAGRIDREELCAQSAPCLVSFNILVEDKLNLYPVEVEIVDINDNAPRFLKEDLEVKILENAAPSSRFLLMGVYDPDVGVNSIQSFKLSGSSHFSVHVQSQAHGPKYPELVLEHTLDREAEAVHHLALIAMDGGDPVRTGMARILVTVVDANDNAPVFTQPIYRVSVPENLPVGTRVLTVNATDQDEGVHAEITYSFVTITEEISQIFCLDRVTGEISTSETLDYEDSKFYELDVEARDQPGLQDRAKVLITILDVNDNAPEVVVTSGSRAIAENAPPGTVIALFQVYDKDSEQNGLVTCSVSESLPFKLEESLDNYFRLVTTTELDREQVSSYNITVTATDRGIPPLSTAKFISLDVSDINDNPPVFSRSSYSVYVPENNPKGISIFSLKAVDSDSEENAEIIYSLTKETLQGTPLSSFLSINSNTGVLYALCSFDYEQFRELNLLVSASDRGKPPLSSIVSLNLFVLDQNDNVPEILYPVLPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVSVQDHGQPSLSATVTLTVAVASSIPDILADLGSLDLPHKSDDSSLTIYLVVAVATVSCIFFAFVMGLLVLRLWHWHKSRPLKATRKDVSNMSTSHFVGIDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYAHTLISQEGCEKNEPLLTQEDSTFCKEEDSLDQMVQ", "length": 811, "header": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAW6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6L9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9N5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDIRGHVGEAKLSAPVERLLLKHPFQRATELMETPASDGSHPEGLFAYLTQERGPVPQCASENHLSSLKQNILIDKMELEATLKEAELATCSVELLLPLFKNTVEGISLENANLSASSLKKIFQQQEILSKELDTFNRVKLSLEHLLKQTHYGQTGANAPSLLKDLSDNESENSNLKRKVLEKEAYIGELSCLFQNEKESALKANRFSQSVKVVHDRLHLQIQKREAENDKLKEHMKGLETQIAKWNLQVKMNKQVAVAIKEASRQKTAALKKASKVYRQRLKHFTGDIEHLTAQIRDQETKLSETVSASNAWKSHYEKMVIEKSELEVQIETMQKQIVNLLEDLKKMETHGKNSCDEILRKLHSLEDENKLLNIENVKLKGMLDTLKDEVASVENELVELQEVEKRQKTLIDVYKTQVQKLQEAAEVVKSRCKNLLHENNLIIKNKNKKLEKMRGQVEAHLKQVERARHSFASAEQRLHECQENLQRYKQKCAEQAHTVRELQGQVDGNHSLLTKPCLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEKYLKHSDLELKKKAAEYTVLSRQLEAALEEGRQKVSEEVEKMSSRERALQIKILDLETELRKKNEEQNQLVGKMNSKAQHQDILLKEIQHSLEKSENQNESIKNYLQFLQISYVTMFR", "length": 674, "header": "tr|A0A9J7F9X8-1|A0A9J7F9X8_CRIGR Isoform 1 of Protein BCAP isoform X1 OS=Cricetulus griseus OX=10029 GN=Odf2l PE=3 SV=1 CANONICAL=A0A9J7F9X8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8T4/entry", "sequence": { "sequence": "MLDIRGHVGEAKLSAPVERLLLKHPFQRATELMETPASDGSHPEGLFAYLTQERGPVPQCASENHLSSLKQNILIDKMELEATLKEAELATCSVELLLPLFKNTVEGISLENANLSASSLKKIFQQQEILSKELDTFNRVKLSLEHLLKQTHYGQTGANAPSLLKDLSDNESENSNLKRKVLEKEAYIGELSCLFQNEKESALKANRFSQSVKVVHDRLHLQIQKREAENDKLKEHMKGLETQIAKWNLQVKMNKQVAVAIKEASRQKTAALKKASKVYRQRLKHFTGDIEHLTAQIRDQETKLSETVSASNAWKSHYEKMVIEKSELEVQIETMQKQIVNLLEDLKKMETHGKNSCDEILRKLHSLEDENKLLNIENVKLKGMLDTLKDEVASVENELVELQEVEKRQKTLIDVYKTQVQKLQEAAEVVKSRCKNLLHENNLIIKNKNKKLEKVDGNHSLLTKPCLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEKYLKHSDLELKKKAAEYTVLSRQLEAALEEGRQKVSEEVEKMSSRERALQIKILDLETELRKKNEEQNQLVGKMNSKAQHQDILLKEIQHSLEKSENQNESIKNYLQFLQISYVTMFR", "length": 621, "header": "tr|A0A9J7F8T4-1|A0A9J7F9X8_CRIGR Computationally mapped isoform of Protein BCAP isoform X1 OS=Cricetulus griseus OX=10029 GN=Odf2l PE=3 SV=1 CANONICAL=A0A9J7F9X8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9R4/entry", "sequence": { "sequence": "MLDIRGHVGEAKLSAPVERLLLKHPFQRATELMETPASDGSHPEGLFAYLTQERGPVPQCASENHLSSLKQNILIDKMELEATLKEAELATCSVELLLPLFKNTVEGISLENANLSASSLKKIFQQQEILSKELDTFNRVKLSLEHLLKQTHYGQTGANAPSLLKDLSDNESENSNLKRKVLEKEAYIGELSCLFQNEKESALKANRFSQSVKVVHDRLHLQIQKREAENDKLKEHMKGLETQIAKWNLQVKMNKQVAVAIKEASRQKTAALKKASKVYRQRLKHFTGDIEHLTAQIRDQETKLSETVSASNAWKSHYEKMVIEKSELEVQIETMQKQIVNLLEDLKKMETHGKNSCDEILRKLHSLEDENKLLNIENVKLKGMLDTLKDEVASVENELVELQEVEKRQKTLIDVYKTQVQKLQEAAEVVKSRCKNLLHENNLIIKNKNKKLEKMRGQVEAHLKQVERARHSFASAEQRLHECQENLQRYKQKCAEQAHTVRELQGQVDGNHSLLTKPCLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEKYLKHSDLELKKKAAEYTVLSRQLEAALEEGRQKVSEEVEKMSSRERALQIKILDLETELRKKNEEQNQLVGKMNSVFILHMSAVLTICSLFM", "length": 649, "header": "tr|A0A9J7F9R4-1|A0A9J7F9R4_CRIGR Computationally mapped isoform of Protein BCAP isoform X2 OS=Cricetulus griseus OX=10029 GN=Odf2l PE=3 SV=1 CANONICAL=A0A9J7F9X8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9X8/entry", "sequence": { "sequence": "MLDIRGHVGEAKLSAPVERLLLKHPFQRATELMETPASDGSHPEGLFAYLTQERGPVPQCASENHLSSLKQNILIDKMELEATLKEAELATCSVELLLPLFKNTVEGISLENANLSASSLKKIFQQQEILSKELDTFNRVKLSLEHLLKQTHYGQTGANAPSLLKDLSDNESENSNLKRKVLEKEAYIGELSCLFQNEKESALKANRFSQSVKVVHDRLHLQIQKREAENDKLKEHMKGLETQIAKWNLQVKMNKQVAVAIKEASRQKTAALKKASKVYRQRLKHFTGDIEHLTAQIRDQETKLSETVSASNAWKSHYEKMVIEKSELEVQIETMQKQIVNLLEDLKKMETHGKNSCDEILRKLHSLEDENKLLNIENVKLKGMLDTLKDEVASVENELVELQEVEKRQKTLIDVYKTQVQKLQEAAEVVKSRCKNLLHENNLIIKNKNKKLEKMRGQVEAHLKQVERARHSFASAEQRLHECQENLQRYKQKCAEQAHTVRELQGQVDGNHSLLTKPCLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEKYLKHSDLELKKKAAEYTVLSRQLEAALEEGRQKVSEEVEKMSSRERALQIKILDLETELRKKNEEQNQLVGKMNSKAQHQDILLKEIQHSLEKSENQNESIKNYLQFLQISYVTMFR", "length": 674, "header": "tr|A0A9J7F9X8-1|A0A9J7F9X8_CRIGR Isoform 1 of Protein BCAP isoform X1 OS=Cricetulus griseus OX=10029 GN=Odf2l PE=3 SV=1 CANONICAL=A0A9J7F9X8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FAW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAW6/entry", "sequence": { "sequence": "METPASDGSHPEGLFAYLTQERGPVPQCASENHLSSLKQNILIDKMELEATLKEAELATCSVELLLPLFKNTVEGISLENANLSASSLKKIFQQQEILSKELDTFNRVKLSLEHLLKQTHYGQTGANAPSLLKDLSDNESENSNLKRKVLEKEAYIGELSCLFQNEKESALKANRFSQSVKVVHDRLHLQIQKREAENDKLKEHMKGLETQIAKWNLQVKMNKQVAVAIKEASRQKTAALKKASKVYRQRLKHFTGDIEHLTAQIRDQETKLSETVSASNAWKSHYEKMVIEKSELEVQIETMQKQIVNLLEDLKKMETHGKNSCDEILRKLHSLEDENKLLNIENVKLKGMLDTLKDEVASVENELVELQEVEKRQKTLIDVYKTQVQKLQEAAEVVKSRCKNLLHENNLIIKNKNKKLEKMRGQVEAHLKQVERARHSFASAEQRLHECQENLQRYKQKCAEQAHTVRELQGQVDGNHSLLTKPCLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEKYLKHSDLELKKKAAEYTVLSRQLEAALEEGRQKVSEEVEKMSSRERALQIKILDLETELRKKNEEQNQLVGKMNSKAQHQDILLKEIQHSLEKSENQNESIKNYLQFLQISYVTMFR", "length": 642, "header": "tr|A0A9J7FAW6-1|A0A9J7FAW6_CRIGR Computationally mapped isoform of Protein BCAP isoform X6 OS=Cricetulus griseus OX=10029 GN=Odf2l PE=3 SV=1 CANONICAL=A0A9J7F9X8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6L9/entry", "sequence": { "sequence": "MLDIRGHVGEAKLSAPVERLLLKHPFQRATELMETPASDGSHPEGLFAYLTQERGPVPQCASENHLSSLKQNILIDKMELEATLKEAELATCSVELLLPLFKNTVEGISLENANLSASSLKKIFQQQEILSKELDTFNRVKLSLEHLLKQTHYGQTGANAPSLLKDLSDNESENSNLKRKVLEKEAYIGELSCLFQNEKESALKANRFSQSVKVVHDRLHLQIQKREAENDKLKEHMKGLETQIAKWNLQVKMNKQVAVAIKEASRQKTAALKKASKVYRQRLKHFTGDIEHLTAQIRDQETKLSETVSASNAWKSHYEKMVIEKSELEVQIETMQKQIVNLLEDLKKMETHGKNSCDEILRKLHSLEDENKLLNIENVKLKGMLDTLKDEVASVENELVELQEVEKRQKTLIDVYKTQVQKLQEAAEVVKSRCKNLLHENNLIIKNKNKKLEKMRGQVEAHLKQVERARHSFASAEQRLHECQENLQRYKQKCAEQAHTVRELQGQVDGNHSLLTKPCLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEKYLKHSDLELKKKAAEYTVLSRQLEAALEEGRQKDKTEA", "length": 595, "header": "tr|A0A9J7J6L9-1|A0A9J7J6L9_CRIGR Computationally mapped isoform of Protein BCAP isoform X5 OS=Cricetulus griseus OX=10029 GN=Odf2l PE=3 SV=1 CANONICAL=A0A9J7F9X8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9N5/entry", "sequence": { "sequence": "MLDIRGHVGEAKLSAPVERLLLKHPFQRATELMETPASDGSHPEGLFAYLTQERGPVPQCASENHLSSLKQNILIDKMELEATLKEAELATCSVELLLPLFKNTVEGISLENANLSASSLKKIFQQQEILSKELDTFNRVKLSLEHLLKQTHYGQTGANAPSLLKDLSDNESENSNLKRKVLEKEAYIGELSCLFQNEKESALKANRFSQSVKVVHDRLHLQIQKREAENDKLKEHMKGLETQIAKWNLQVKMNKQVAVAIKEASRQKTAALKKASKVYRQRLKHFTGDIEHLTAQIRDQETKLSETVSASNAWKSHYEKMVIEKSELEVQIETMQKQIVNLLEDLKKMETHGKNSCDEILRKLHSLEDENKLLNIENVKLKGMLDTLKDEVASVENELVELQEVEKRQKTLIDVYKTQVQKLQEAAEVVKSRCKNLLHENNLIIKNKNKKLEKMRGQVEAHLKQVERARHSFASAEQRLHECQENLQRYKQKCAEQAHTVRELQGQVDGNHSLLTKPCLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEKYLKHSDLELKKKAAEYTVLSRQLEAALEEGRQKKAQHQDILLKEIQHSLEKSENQNESIKNYLQFLQISYVTMFR", "length": 632, "header": "tr|A0A9J7J9N5-1|A0A9J7J9N5_CRIGR Computationally mapped isoform of Protein BCAP isoform X3 OS=Cricetulus griseus OX=10029 GN=Odf2l PE=3 SV=1 CANONICAL=A0A9J7F9X8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8T4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8T4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773183", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773183", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of cilium assembly", "id": "GO:1902018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902018", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9X8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9X8" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9X8" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9X8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 170, "end_pos": 172 }, { "start_pos": 511, "end_pos": 513 }, { "start_pos": 655, "end_pos": 657 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F8W8-1", "uniprot_ac": "A0A9J7F8W8", "uniprot_id": "A0A9J7F8W8_CRIGR", "mass": { "chemical_mass": 46055.0, "monoisotopic_mass": 46055.0 }, "refseq": { "ac": "XP_007652810", "name": "olfactory receptor 10AD1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652810" }, "gene_names": [ { "name": "LOC100755150", "type": "recommended", "evidence": [ { "id": "A0A9J7F8W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" } ] }, { "name": "LOC100755150", "type": "synonym", "evidence": [ { "id": "XP_007652810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652810" } ] } ], "protein_names": [ { "name": "Olfactory receptor 10AD1", "type": "synonym", "evidence": [ { "id": "A0A9J7F8W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 10AD1", "type": "synonym", "evidence": [ { "id": "XP_007652810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652810" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 23% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616677.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007652810.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652810", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652810" } ] }, { "annotation": "Possible taste receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8#function" }, { "database": "UniProtKB", "id": "ARBA00053672", "url": "https://www.uniprot.org/uniprotkb/ARBA00053672#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755150", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8", "locus": {} } ], "crossref": [ { "id": "A0A9J7F8W8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F8W8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15237", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15237", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755150", "url": "https://www.ncbi.nlm.nih.gov/gene/100755150", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755150", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F8W8", "url": "https://www.orthodb.org/?gene=A0A9J7F8W8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652810", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652810", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVLADSVHISYGPTKHFHISPHYAQPNHKHQLSTDTVSDHDKCSNQIYQRLLSSKAFTVTWVKPLAGFLGPGEHLTFHTTVSFMLFLPASSNRPRTADLRNSSTVTEFILVGFEQSSPSTRALLFTLFLALYSLAMAMNGLIIFITWTDPRLNSPMYFFLGHLSFLDICFITTTIPQMLIHLVTKNHTVSFASCMVQMYLVFLVGVAECILLAFMAYDRYVAICHPLNYAQIMSHQVCVRLVLTSWIFGMVNGIFLEYISFRNPFCKDNHIENFFCEAPIVIALSCGDPKFSMKLIFVDAFVVLFSPMVLIVTSYARILASILSRASSSGHGKTFSTCASHLTVVIFLYTSAMFSYMNPRSTHGPDKDKPFSLLYTIIIPMCNPVIYSFRNKEMKGAMRRALGRGNLA", "length": 409, "header": "tr|A0A9J7F8W8-1|A0A9J7F8W8_CRIGR Isoform 1 of Olfactory receptor 10AD1 OS=Cricetulus griseus OX=10029 GN=LOC100755150 PE=3 SV=1 CANONICAL=A0A9J7F8W8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8/entry", "sequence": { "sequence": "MEVLADSVHISYGPTKHFHISPHYAQPNHKHQLSTDTVSDHDKCSNQIYQRLLSSKAFTVTWVKPLAGFLGPGEHLTFHTTVSFMLFLPASSNRPRTADLRNSSTVTEFILVGFEQSSPSTRALLFTLFLALYSLAMAMNGLIIFITWTDPRLNSPMYFFLGHLSFLDICFITTTIPQMLIHLVTKNHTVSFASCMVQMYLVFLVGVAECILLAFMAYDRYVAICHPLNYAQIMSHQVCVRLVLTSWIFGMVNGIFLEYISFRNPFCKDNHIENFFCEAPIVIALSCGDPKFSMKLIFVDAFVVLFSPMVLIVTSYARILASILSRASSSGHGKTFSTCASHLTVVIFLYTSAMFSYMNPRSTHGPDKDKPFSLLYTIIIPMCNPVIYSFRNKEMKGAMRRALGRGNLA", "length": 409, "header": "tr|A0A9J7F8W8-1|A0A9J7F8W8_CRIGR Isoform 1 of Olfactory receptor 10AD1 OS=Cricetulus griseus OX=10029 GN=LOC100755150 PE=3 SV=1 CANONICAL=A0A9J7F8W8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755150", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F8W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 139, "end_pos": 388, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 187, "end_pos": 189 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F942-1", "uniprot_ac": "A0A9J7F942", "uniprot_id": "A0A9J7F942_CRIGR", "mass": { "chemical_mass": 88724.0, "monoisotopic_mass": 88724.0 }, "refseq": { "ac": "XP_027250818", "name": "rho GTPase-activating protein 20", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250818" }, "gene_names": [ { "name": "LOC100757375", "type": "recommended", "evidence": [ { "id": "A0A9J7F942", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942" } ] }, { "name": "LOC100757375", "type": "synonym", "evidence": [ { "id": "XP_027250818", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250818" } ] } ], "protein_names": [ { "name": "Rho GTPase-activating protein 20", "type": "synonym", "evidence": [ { "id": "A0A9J7F942", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942/entry#names_and_taxonomy" } ] }, { "name": "rho GTPase-activating protein 20", "type": "synonym", "evidence": [ { "id": "XP_027250818", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250818" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 29% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250818", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250818" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F942", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757375", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942", "locus": {} } ], "crossref": [ { "id": "A0A9J7F942", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F942", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13319", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13319", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757375", "url": "https://www.ncbi.nlm.nih.gov/gene/100757375", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757375", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757375", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F942", "url": "https://www.orthodb.org/?gene=A0A9J7F942", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23179:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23179:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22286", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22286", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250818", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250818", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F942", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F942-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METLDENATGVIHRTLLCQGPVELRRGWRRKQQHLSLFSDVLVVSNNLCKRKFNIKYVIPLSFLWMGDYVDILGTDSSSADKSILLFWPMGNFVATFRSTEQKDRWYSFLQRSINEATKGYRKHFKLPIFTEDIPSCASPLYVTTTDLETVNDVIQKLLPLIGMPSAQDYQLWFCHDREKAPGLLQEHEHLYDIIMRNIKNPFSQWASRNHTAFPALPGLYVEQPDIQGRFILKPREPARIQKQNSCTNETTLYNDLISSLDTEEPRIKKQWPFISWLFQRSSVPYQNQMCTAPPVAKTGKLFGHDLTAICEDGNLPTAILDILSFISEKGPITEGIFRTSGDIRAFRALKERLDSGIEVNLNNESVPVVASILKEFLQNIEGSVLTSRLYDEWLAVLDQVCEEEKAAAVQRLLEQLPQPNVILLKQLFGILYKIERNSEVNHMTSSNLAVCIALSILCLPSSCNSGFPDVSKKICLVSFLIENYPKIFGEDSPFHDESSFVCSDGEKSYNSLNTVTDNVEMEVKEHEDNTCPSGSTCPTGNDAVSRSPSAPLHNEGIIDSEEDVKTSFINPTITQDPDTSQDNMCLTPPEPNEEHPIENTHTPPAANEANLSNSDTPPAAKSKIVFGNTHTPPAPNKENLEISTPLAPIALTTPVKAFSQLQIFSVIIVILCCILHILYCYNKSHSIIDCLDFFMIPHSLWRMLTILFTKHLQLPYDFIKELKTTNCGCVMAMKKPQAYSKFISGALYNLLLEAPRKPDPLLKSALGSPPQTATWRKQKGPHTRKQA", "length": 788, "header": "tr|A0A9J7F942-1|A0A9J7F942_CRIGR Isoform 1 of Rho GTPase-activating protein 20 OS=Cricetulus griseus OX=10029 GN=LOC100757375 PE=4 SV=1 CANONICAL=A0A9J7F942-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F942-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942/entry", "sequence": { "sequence": "METLDENATGVIHRTLLCQGPVELRRGWRRKQQHLSLFSDVLVVSNNLCKRKFNIKYVIPLSFLWMGDYVDILGTDSSSADKSILLFWPMGNFVATFRSTEQKDRWYSFLQRSINEATKGYRKHFKLPIFTEDIPSCASPLYVTTTDLETVNDVIQKLLPLIGMPSAQDYQLWFCHDREKAPGLLQEHEHLYDIIMRNIKNPFSQWASRNHTAFPALPGLYVEQPDIQGRFILKPREPARIQKQNSCTNETTLYNDLISSLDTEEPRIKKQWPFISWLFQRSSVPYQNQMCTAPPVAKTGKLFGHDLTAICEDGNLPTAILDILSFISEKGPITEGIFRTSGDIRAFRALKERLDSGIEVNLNNESVPVVASILKEFLQNIEGSVLTSRLYDEWLAVLDQVCEEEKAAAVQRLLEQLPQPNVILLKQLFGILYKIERNSEVNHMTSSNLAVCIALSILCLPSSCNSGFPDVSKKICLVSFLIENYPKIFGEDSPFHDESSFVCSDGEKSYNSLNTVTDNVEMEVKEHEDNTCPSGSTCPTGNDAVSRSPSAPLHNEGIIDSEEDVKTSFINPTITQDPDTSQDNMCLTPPEPNEEHPIENTHTPPAANEANLSNSDTPPAAKSKIVFGNTHTPPAPNKENLEISTPLAPIALTTPVKAFSQLQIFSVIIVILCCILHILYCYNKSHSIIDCLDFFMIPHSLWRMLTILFTKHLQLPYDFIKELKTTNCGCVMAMKKPQAYSKFISGALYNLLLEAPRKPDPLLKSALGSPPQTATWRKQKGPHTRKQA", "length": 788, "header": "tr|A0A9J7F942-1|A0A9J7F942_CRIGR Isoform 1 of Rho GTPase-activating protein 20 OS=Cricetulus griseus OX=10029 GN=LOC100757375 PE=4 SV=1 CANONICAL=A0A9J7F942-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F942", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F942" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"evidence": [ { "id": "XP_027253776", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253776" }, { "id": "A0A9J7F987", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F987/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027253776.1. 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Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772708", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772708", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RRNCWEP", "url": "https://omabrowser.org/oma/group/RRNCWEP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M9J5", "url": "https://www.orthodb.org/?gene=A0A8C2M9J5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F9C2", "url": "https://www.orthodb.org/?gene=A0A9J7F9C2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FBJ5", "url": "https://www.orthodb.org/?gene=A0A9J7FBJ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FBX4", "url": "https://www.orthodb.org/?gene=A0A9J7FBX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JBG3", "url": "https://www.orthodb.org/?gene=A0A9J7JBG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF475", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF475", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652875", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652875", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M9J5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M9J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9J5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBJ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J838", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J838-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J838-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPATEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAIGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYPLHPAGAPWVYCLPTDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWETVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 649, "header": "tr|A0A9J7FBJ5-1|A0A9J7FBJ5_CRIGR Isoform 1 of Kelch-like protein 17 isoform X1 OS=Cricetulus griseus OX=10029 GN=Klhl17 PE=4 SV=1 CANONICAL=A0A9J7FBJ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M9J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9J5/entry", "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPATEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAIGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYVRVATLDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWETVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 640, "header": "tr|A0A8C2M9J5-1|A0A8C2M9J5_CRIGR Computationally mapped isoform of Kelch-like protein 17 OS=Cricetulus griseus OX=10029 GN=Klhl17 PE=4 SV=1 CANONICAL=A0A9J7FBJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C2/entry", "sequence": { "sequence": "MPASPGALGGAWSPRRDTEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAIGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYPLHPAGAPWVYCLPTDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWETVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 632, "header": "tr|A0A9J7F9C2-1|A0A9J7FBJ5_CRIGR Computationally mapped isoform of Kelch-like protein 17 isoform X1 OS=Cricetulus griseus OX=10029 GN=Klhl17 PE=4 SV=1 CANONICAL=A0A9J7FBJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBJ5/entry", "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPATEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAIGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYPLHPAGAPWVYCLPTDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWETVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 649, "header": "tr|A0A9J7FBJ5-1|A0A9J7FBJ5_CRIGR Isoform 1 of Kelch-like protein 17 isoform X1 OS=Cricetulus griseus OX=10029 GN=Klhl17 PE=4 SV=1 CANONICAL=A0A9J7FBJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBX4/entry", "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPATEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAIGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNRNMDIHCCYEHPETIYGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWETVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 625, "header": "tr|A0A9J7FBX4-1|A0A9J7FBX4_CRIGR Computationally mapped isoform of Kelch-like protein 17 isoform X5 OS=Cricetulus griseus OX=10029 GN=Klhl17 PE=4 SV=1 CANONICAL=A0A9J7FBJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J838-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J838/entry", "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPATEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAIGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYPLHPAGAPWVYCLPTDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWETVAPMNIRRCIRPGVGGAHMIWWPWTAGSTLWGAMMAAPASTP", "length": 608, "header": "tr|A0A9J7J838-1|A0A9J7J838_CRIGR Computationally mapped isoform of Kelch-like protein 17 isoform X6 OS=Cricetulus griseus OX=10029 GN=Klhl17 PE=4 SV=1 CANONICAL=A0A9J7FBJ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBG3/entry", "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPATEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAIGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYPLHPAGAPWVYCLPTDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWETVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKPTEHLWLLSGQQGKGL", "length": 626, "header": "tr|A0A9J7JBG3-1|A0A9J7JBG3_CRIGR Computationally mapped isoform of Kelch-like protein 17 isoform X4 OS=Cricetulus griseus OX=10029 GN=Klhl17 PE=4 SV=1 CANONICAL=A0A9J7FBJ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772708", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772708", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KEU3-1", "protein_name": "BTB domain-containing protein", "gene_name": "Dm.CG15097", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFLPVKSNHSGEASGNNEDVTTTSNNSTQTPSDLSPPGPNEEVLPQAHHQNPGHCIASFAAINQMRNNAQLCDVRLEVGGDTINAHRVVLASVSPYFYAMFNDDMLERTQGLVRLHDVDSSALRQLIDYTYTGEITITEQNVQVLLPASGLLQMHSVRDACCKFLLRQLHPSNCLGIRSFADAHSCKELHTRSHKYALQNFQQVVGTEEFLLLPFEEVRELISNSQLNISSEERVFAAVINWVKHDLPTRRLHIAELMSNVRLPLVSRDFLMSCVETETLMRDDSECKELLLEAMKYHLLPEQRSIMGSQRTQERRPEGMKPYVFAVGGGSLFAIHNECEVYNPRSNSWSPVAPMLWRRSRSGVTSLHKQLYVVGGYDGVSDLATAESYNPLTNKWSNITPMGTKRSCLGICSYDALIYVCGGYDGASCLSSMERYDPLTGIWSSCPAMSTRRRYCRLAVLENCIYSLGGFDSTNYQSSVERFDPRVGRWQPVPSMSARRSSCGVASTDGHLYCIGGNDGTMCMSSGERFSLRRNSWEPIAAMHSRRSTHEVVEVEGALFALGGNDGSSSLNSVERYDTRLNKWSVVNAMVARRSSVGAAVLECFHLERGLVQTTNLXPLASITESFAAAAASGTSNGNSTINGIGSGGVIPSSSGVGGTLTVPSRAEAAAFTANIALSSSAPSASSTLRRHRRDTPGLAESRRANSNASSSGSESGSTSGASGSGGGKPPATAXSWSMSRRF", "length": 743 }, "evidence": [ { "id": "A0A9J7FBJ5", "url": "https://omabrowser.org/oma/group/A0A9J7FBJ5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A8M2B929-1", "protein_name": "Kelch-like protein 17", "gene_name": "klhl17", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMEGGMQLLNRDGHSISHNSKRHYHDSFVSMNRMRQRGLLCDIVLHVANKEIKAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALEQLVQYAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKSAHKYVLQHFVEVSKTEEFMLLPLKQVLDLISSDNLNVPSEEEVYRAVLSWVKHDIDGRRQHVPRLMKCVRLPLLTRDFLMSNVDTELLVRHHSECKDLLIEALKYHLMPEQRGVLSNSRTRPRRCEGASPVLFAVGGGSLFAIHGDCEAYDTRTDRWHMVASMSTRRARVGVAAIGNKLYAVGGYDGTSDLATVESYDPVTNAWQPEVSMGTRRSCLGVAVLHGLLYAAGGYDGASCLNSAERYDPLTSTWTSIAAMSTRRRYVRVATLDGSLYAVGGYDSSSHLATVEKYDPQSNAWTAIANMLSRRSSAGVAVLEGMLYVAGGNDGTSCLNSVERYNPKTNTWEGVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRSNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 591 }, "evidence": [ { "id": "A0A9J7FBJ5", "url": "https://omabrowser.org/oma/group/A0A9J7FBJ5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1B7Y3-1", "protein_name": "Kelch-like protein 17", "gene_name": "KLHL17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQPRSERPAGRTQSPEHGSPGPAPEAPPPPPPPQPPAPEAERARPRQARPTAPMEGTMQLLSREGHAVSHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCGDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDARRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYVRVAMLDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSPKAGAWESVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 643 }, "evidence": [ { "id": "A0A9J7FBJ5", "url": "https://omabrowser.org/oma/group/A0A9J7FBJ5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NVA2-1", "protein_name": "Kelch-like protein 17", "gene_name": "KLHL17", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEGGVQLLNRDGHSISHNSKRHYHDAFVCMNRMRQRGLLCDIVLHVGTKEIKAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALEQLVQYAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKSAHKYVLQHFVEVSKTEEFMLLPLKQVLDLISSDSLNVPSEEEVYRAVLSWVKHDVDSRRQHVPRLMKCVRLPLLSRDFLMSNVDTELLVRHHSECKDLLIEALKYHLMPEQRGVLSNSRTRPRRCEGASTVLFAVGGGSLFAIHGDCEAYDTRTDRWHMVASMSTRRARVGVAAIGNKLYAVGGYDGTSDLATVESYDPVTNSWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYVRVATLEGNLYAVGGYDSSSHLATVEKYEPQINTWTPIANMLSRRSSAGVAVLEGMLYVAGGNDGTSCLNSVERYNPKTNTWESVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 590 }, "evidence": [ { "id": "A0A9J7FBJ5", "url": "https://omabrowser.org/oma/group/A0A9J7FBJ5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6TDP3-1", "protein_name": "Kelch-like protein 17", "gene_name": "Klhl17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPAPEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYVRVATLDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWESVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 640 }, "evidence": [ { "id": "A0A9J7FBJ5", "url": "https://omabrowser.org/oma/group/A0A9J7FBJ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6TDP4-1", "protein_name": "Kelch-like protein 17", "gene_name": "KLHL17", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQPRSERPAGRTQSPEHGSPGPGPEAPPPPPPQPPAPEAERTRPRQARPAAPMEGAVQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADAHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEEVYRAVLSWVKHDVDARRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYSAGGYDGASCLNSAERYDPLTGTWTSVAAMSTRRRYVRVATLDGNLYAVGGYDSSSHLATVEKYEPQVNVWSPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSPKAGAWESVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 642 }, "evidence": [ { "id": "A0A9J7FBJ5", "url": "https://omabrowser.org/oma/group/A0A9J7FBJ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K430-1", "protein_name": "Kelch-like protein 17", "gene_name": "Klhl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQPRGERPAGRTQSPEHSSPGPGPEAPPPPQPPAPEAERARPRQARPAAPMEGAMQLLSREGHSVAHNSKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEDVYRAVLSWVKHDVDTRRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYAAGGYDGASCLNSAERYDPLTGTWTSIAAMSTRRRYVRVATLDGNLYAVGGYDSSSHLATVEKYEPQVNSWTPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSTKAGAWESVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTSL", "length": 640 }, "evidence": [ { "id": "A0A9J7FBJ5", "url": "https://omabrowser.org/oma/group/A0A9J7FBJ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBJ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBJ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBJ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBJ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBJ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBJ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FBJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBJ5" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 157, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"uniprot_canonical_ac": "A0A9J7F9F1-1", "uniprot_ac": "A0A9J7F9F1", "uniprot_id": "A0A9J7F9F1_CRIGR", "mass": { "chemical_mass": 27547.0, "monoisotopic_mass": 27547.0 }, "refseq": { "ac": "XP_027254513", "name": "signal-regulatory protein beta-1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254513" }, "gene_names": [ { "name": "LOC100758347", "type": "recommended", "evidence": [ { "id": "A0A9J7F9F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1" } ] }, { "name": "LOC100758347", "type": "synonym", "evidence": [ { "id": "XP_027254513", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254513" } ] } ], "protein_names": [ { "name": "Signal-regulatory protein beta-1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7F9F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1/entry#names_and_taxonomy" } ] }, { "name": "signal-regulatory protein beta-1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027254513", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254513" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 16% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254513", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254513" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100758347", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1", "locus": {} } ], "crossref": [ { "id": "A0A9J7F9F1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F9F1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758347", "url": "https://www.ncbi.nlm.nih.gov/gene/100758347", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758347", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758347", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F9F1", "url": "https://www.orthodb.org/?gene=A0A9J7F9F1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19971", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19971", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254513", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254513", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F9F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEILADSEWLGLPEQVCLYTIPIPGDSKKGKEKAEVPPEELKVIQPEESVSVSPGESATLTCTVTSLLPVGPIVWYRNAGQHRQLMYRFSGESFPRITNVTDASNRKNMDFSIRISNVTPADAGTYYCVKIQNSAVDEVFKSGGGTMLYVHEARPEELKVIQPEKSVSVSQGGSATLTCAVNSLLPVGPIVWYRNAGQHRQLVYRFSGEPFPRITNVTDTSNRKNMDFTIHISNVTYTDDGTYYYVKL", "length": 248, "header": "tr|A0A9J7F9F1-1|A0A9J7F9F1_CRIGR Isoform 1 of Signal-regulatory protein beta-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758347 PE=4 SV=1 CANONICAL=A0A9J7F9F1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F9F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1/entry", "sequence": { "sequence": "MEILADSEWLGLPEQVCLYTIPIPGDSKKGKEKAEVPPEELKVIQPEESVSVSPGESATLTCTVTSLLPVGPIVWYRNAGQHRQLMYRFSGESFPRITNVTDASNRKNMDFSIRISNVTPADAGTYYCVKIQNSAVDEVFKSGGGTMLYVHEARPEELKVIQPEKSVSVSQGGSATLTCAVNSLLPVGPIVWYRNAGQHRQLVYRFSGEPFPRITNVTDTSNRKNMDFTIHISNVTYTDDGTYYYVKL", "length": 248, "header": "tr|A0A9J7F9F1-1|A0A9J7F9F1_CRIGR Isoform 1 of Signal-regulatory protein beta-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758347 PE=4 SV=1 CANONICAL=A0A9J7F9F1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 119, "start_aa": "Thr", "end_pos": 119, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr119", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9F1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758347", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758347", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F9F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9F1" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 128, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 119 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FB75-1", "uniprot_ac": "A0A9J7FB75", "uniprot_id": "A0A9J7FB75_CRIGR", "mass": { "chemical_mass": 308768.0, "monoisotopic_mass": 308768.0 }, "refseq": { "ac": "XP_007610116", "name": "neurobeachin-like protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007610116" }, "gene_names": [ { "name": "Nbeal1", "type": "recommended", "evidence": [ { "id": "A0A9J7FB75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75" } ] }, { "name": "Nbeal1", "type": "synonym", "evidence": [ { "id": "XP_007610116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007610116" } ] } ], "protein_names": [ { "name": "Neurobeachin-like protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FB75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75/entry#names_and_taxonomy" } ] }, { "name": "neurobeachin-like protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007610116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007610116" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613648.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007610116", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007610116" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nbeal1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75", "locus": {} } ], "crossref": [ { "id": "cd01201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06071", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06071", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768393", "url": "https://www.ncbi.nlm.nih.gov/gene/100768393", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768393", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768393", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IVFKVME", "url": "https://omabrowser.org/oma/group/IVFKVME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F9H8", "url": "https://www.orthodb.org/?gene=A0A9J7F9H8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FB75", "url": "https://www.orthodb.org/?gene=A0A9J7FB75", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FCE1", "url": "https://www.orthodb.org/?gene=A0A9J7FCE1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13743", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13743", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13743:SF115", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13743:SF115", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02138", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02138", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14844", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14844", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20426", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20426", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007610116", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007610116", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCE1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARERLFELWMLYCTKKDPDYLRLWLDNFVLSYEQFLDVDFEKLPTRVDDVPPGISLLPDNILQVLRIQLLHCVQKTADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINHVITMTTLYIQQLKSKKKEKEMADQTSIEEFVIHALAFCESLYDPYRNWRHRISGRILSSVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKESLKCCLLHLFGAIVAGGQRNALQAISPATMEVLMRVLSDCDSWEEGDPEEVGRKRELTLKCLTQVVHILLTSSSDQRQVETSTILENYFKLLNSDHSALPKQRRSRRWESQFIALQIKMLNTITAMLDCADRPVLQAIFLNSNCFEHLIRLLQNCKLFLNAHSMVADKNEKDLANQLLTEISEDQVFQGRLDCLAVSSIQALTAVMKNSPAAKEVFKERIGYMHMFEVLKSLGQPSLELLKELMNMAVEGDHTSVGILGISNVHPLLVLIQWLPELESHDLQIFISDWLKKICCINKQSRTTCVNANMGIRIIETLESHSSLHRICAENLIAIHGSLGSQSVSSEEVRRLLRLLRVDESELIHPYTIPVTRAILTMARKLSFESALQYFNLSHSMAGISVPAIQKWPGSAFSFTAWFCLDQDQLTLGTTNQRGKRKQLYSFFTGSGMGFEAFITHSGMLVVAVCTKREYATVMLPDHSFCDSLWHNITIVHMPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKSVSKLISAGTQDSEWGCPTSLEGQLGSVIVFHEALQPPQVKALYLAGPNCLSPWKCQDCDMADLPSSLLLQYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHLMEGQTSEGMNENTVNELITPIEQDCMALASTKASESRLEKNLVATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGTLMDVNVLVAIQLLIEQVSLEKNTQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHGCTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLMFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGMGLLLNEAPVNTSLIKNLVNQIINADPVINFKDLLSVVYISHRTHVNVRVALCGKILQILQSQPDAAYQISQQVGWQDTFVKLFLKENFENVNSLHKHGKAVSVKENKNVSTEKLDDEKMTLADVSSDHWSLEDSQSLNSNTPLFQEDGSEGELSFKSENQEEFWHSNTSHLSLDLSGTDSCELSESGSQMPDSSPSTPSPVESIKSFSMRSDKERSITNEMDFSDDFLESQEGCEEELLQLLTNILNYVMSKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLILLQKMLEWAVTENRDAKSSPVTAENAFRLMLIIQDFLQSEGLVNSNVWTEKLLEDTTQLLDCLSVWYSETPVWVKLSQIQLQLLLEFIGRGSLQVCAVASAKLNALLQTKVIENQDEACFILGKLEHILNRSIKEQTEIYSFLIPLFRTLVSKIYELLFMNLHLPSLPFTNGSASFFEDFQEYCNSNEWQVYIEKYIVPYMKQYEVHTFYDGHEYMALYWKNCYEALMVNMHKRDREGGESKLKFQEYFVEPFNRKARQENLRYNNMIKQLSNQQLATFRRWKAIRLYLTCERGPWAERKQNQIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGVQHLQPSSDSLLLEVVKQVKLSDMEEDKLELLEEDMIARVNIDEKEEQDQKEKLVLTEDCELITVIDIIPGRLEITTQHIYFHDNSIEKEDGIGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKVYSRLLSLHSPNSYGTRSPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMQEKYETFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFNLGYLQVSKELVNDVILPRWAKSPEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEVIQKQTKTEISTLNLFQHLPQLKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITISMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTVNGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQAMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLASKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTIQKGQYMRTLRPPCESSLFLTIPNLAISWEGHIVVCSSLEEKPTLKDKNMLHVFSVNGKYLGSQVLNEQISDICIIGEHVITGSLQGLLSIRELHSLNLSITPLAMRLPIHCVSVTKENSHVLVGLEDGKLIVVGVGKPAEMRSSQLSRKLWGSSKRLSQISAGETEYNTQDFK", "length": 2708, "header": "tr|A0A9J7FB75-1|A0A9J7FB75_CRIGR Isoform 1 of Neurobeachin-like protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nbeal1 PE=4 SV=1 CANONICAL=A0A9J7FB75-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F9H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H8/entry", "sequence": { "sequence": "MAARERLFELWMLYCTKKDPDYLRLWLDNFVLSYEQFLDVDFEKLPTRVDDVPPGISLLPDNILQVLRIQLLHCVQKTADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINHVITMTTLYIQQLKSKKKEKEMADQTSIEEFVIHALAFCESLYDPYRNWRHRISGRILSSVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKESLKCCLLHLFGAIVAGGQRNALQAISPATMEVLMRVLSDCDSWEEGDPEEVGRKRELTLKCLTQVVHILLTSSSDQRQVETSTILENYFKLLNSDHSALPKQRRSRRWESQFIALQIKMLNTITAMLDCADRPVLQAIFLNSNCFEHLIRLLQNCKVFQGRLDCLAVSSIQALTAVMKNSPAAKEVFKERIGYMHMFEVLKSLGQPSLELLKELMNMAVEGDHTSVGILGISNVHPLLVLIQWLPELESHDLQIFISDWLKKICCINKQSRTTCVNANMGIRIIETLESHSSLHRICAENLIAIHGSLGSQSVSSEEVRRLLRLLRVDESELIHPYTIPVTRAILTMARKLSFESALQYFNLSHSMAGISVPAIQKWPGSAFSFTAWFCLDQDQLTLGTTNQRGKRKQLYSFFTGSGMGFEAFITHSGMLVVAVCTKREYATVMLPDHSFCDSLWHNITIVHMPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKSVSKLISAGTQDSEWGCPTSLEGQLGSVIVFHEALQPPQVKALYLAGPNCLSPWKCQDCDMADLPSSLLLQYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHLMEGQTSEGMNENTVNELITPIEQDCMALASTKASESRLEKNLVATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGTLMDVNVLVAIQLLIEQVSLEKNTQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHGCTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLMFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGMGLLLNEAPVNTSLIKNLVNQIINADPVINFKDLLSVVYISHRTHVNVRVALCGKILQILQSQPDAAYQISQQVGWQDTFVKLFLKENFENVNSLHKHGKAVSVKENKNVSTEKLDDEKMTLADVSSDHWSLEDSQSLNSNTPLFQEDGSEGELSFKSENQEEFWHSNTSHLSLDLSGTDSCELSESGSQMPDSSPSTPSPVESIKSFSMRSDKERSITNEMDFSDDFLESQEGCEEELLQLLTNILNYVMSKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLILLQKMLEWAVTENRDAKSSPVTAENAFRLMLIIQDFLQSEGLVNSNVWTEKLLEDTTQLLDCLSVWYSETPVWVKLSQIQLQLLLEFIGRGSLQVCAVASAKLNALLQTKVIENQDEACFILGKLEHILNRSIKEQTEIYSFLIPLFRTLVSKIYELLFMNLHLPSLPFTNGSASFFEDFQEYCNSNEWQVYIEKYIVPYMKQYEVHTFYDGHEYMALYWKNCYEALMVNMHKRDREGGESKLKFQEYFVEPFNRKARQENLRYNNMIKQLSNQQLATFRRWKAIRLYLTCERGPWAERKQNQIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGVQHLQPSSDSLLLEVVKQVKLSDMEEDKLELLEEDMIARVNIDEKEEQDQKEKLVLTEDCELITVIDIIPGRLEITTQHIYFHDNSIEKEDGIGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKVYSRLLSLHSPNSYGTRSPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMQEKYETFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFNLGYLQVSKELVNDVILPRWAKSPEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEVIQKQTKTEISTLNLFQHLPQLKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITISMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTVNGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQAMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLASKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTIQKGQYMRTLRPPCESSLFLTIPNLAISWEGHIVVCSSLEEKPTLKDKNMLHVFSVNGKYLGSQVLNEQISDICIIGEHVITGSLQGLLSIRELHSLNLSITPLAMRLPIHCVSVTKENSHVLVGLEDGKLIVVGVGKPAEMRSSQLSRKLWGSSKRLSQISAGETEYNTQDFK", "length": 2679, "header": "tr|A0A9J7F9H8-1|A0A9J7FB75_CRIGR Computationally mapped isoform of Neurobeachin-like protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nbeal1 PE=4 SV=1 CANONICAL=A0A9J7FB75-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75/entry", "sequence": { "sequence": "MAARERLFELWMLYCTKKDPDYLRLWLDNFVLSYEQFLDVDFEKLPTRVDDVPPGISLLPDNILQVLRIQLLHCVQKTADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINHVITMTTLYIQQLKSKKKEKEMADQTSIEEFVIHALAFCESLYDPYRNWRHRISGRILSSVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKESLKCCLLHLFGAIVAGGQRNALQAISPATMEVLMRVLSDCDSWEEGDPEEVGRKRELTLKCLTQVVHILLTSSSDQRQVETSTILENYFKLLNSDHSALPKQRRSRRWESQFIALQIKMLNTITAMLDCADRPVLQAIFLNSNCFEHLIRLLQNCKLFLNAHSMVADKNEKDLANQLLTEISEDQVFQGRLDCLAVSSIQALTAVMKNSPAAKEVFKERIGYMHMFEVLKSLGQPSLELLKELMNMAVEGDHTSVGILGISNVHPLLVLIQWLPELESHDLQIFISDWLKKICCINKQSRTTCVNANMGIRIIETLESHSSLHRICAENLIAIHGSLGSQSVSSEEVRRLLRLLRVDESELIHPYTIPVTRAILTMARKLSFESALQYFNLSHSMAGISVPAIQKWPGSAFSFTAWFCLDQDQLTLGTTNQRGKRKQLYSFFTGSGMGFEAFITHSGMLVVAVCTKREYATVMLPDHSFCDSLWHNITIVHMPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKSVSKLISAGTQDSEWGCPTSLEGQLGSVIVFHEALQPPQVKALYLAGPNCLSPWKCQDCDMADLPSSLLLQYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHLMEGQTSEGMNENTVNELITPIEQDCMALASTKASESRLEKNLVATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGTLMDVNVLVAIQLLIEQVSLEKNTQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHGCTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLMFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGMGLLLNEAPVNTSLIKNLVNQIINADPVINFKDLLSVVYISHRTHVNVRVALCGKILQILQSQPDAAYQISQQVGWQDTFVKLFLKENFENVNSLHKHGKAVSVKENKNVSTEKLDDEKMTLADVSSDHWSLEDSQSLNSNTPLFQEDGSEGELSFKSENQEEFWHSNTSHLSLDLSGTDSCELSESGSQMPDSSPSTPSPVESIKSFSMRSDKERSITNEMDFSDDFLESQEGCEEELLQLLTNILNYVMSKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLILLQKMLEWAVTENRDAKSSPVTAENAFRLMLIIQDFLQSEGLVNSNVWTEKLLEDTTQLLDCLSVWYSETPVWVKLSQIQLQLLLEFIGRGSLQVCAVASAKLNALLQTKVIENQDEACFILGKLEHILNRSIKEQTEIYSFLIPLFRTLVSKIYELLFMNLHLPSLPFTNGSASFFEDFQEYCNSNEWQVYIEKYIVPYMKQYEVHTFYDGHEYMALYWKNCYEALMVNMHKRDREGGESKLKFQEYFVEPFNRKARQENLRYNNMIKQLSNQQLATFRRWKAIRLYLTCERGPWAERKQNQIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGVQHLQPSSDSLLLEVVKQVKLSDMEEDKLELLEEDMIARVNIDEKEEQDQKEKLVLTEDCELITVIDIIPGRLEITTQHIYFHDNSIEKEDGIGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKVYSRLLSLHSPNSYGTRSPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMQEKYETFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFNLGYLQVSKELVNDVILPRWAKSPEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEVIQKQTKTEISTLNLFQHLPQLKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITISMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTVNGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQAMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLASKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTIQKGQYMRTLRPPCESSLFLTIPNLAISWEGHIVVCSSLEEKPTLKDKNMLHVFSVNGKYLGSQVLNEQISDICIIGEHVITGSLQGLLSIRELHSLNLSITPLAMRLPIHCVSVTKENSHVLVGLEDGKLIVVGVGKPAEMRSSQLSRKLWGSSKRLSQISAGETEYNTQDFK", "length": 2708, "header": "tr|A0A9J7FB75-1|A0A9J7FB75_CRIGR Isoform 1 of Neurobeachin-like protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nbeal1 PE=4 SV=1 CANONICAL=A0A9J7FB75-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCE1/entry", "sequence": { "sequence": "MHWHSVKVCMIRIEIGDTEFQDESLVLWKRADRNTNRLLSQWSLFPFFIRNALQAISPATMEVLMRVLSDCDSWEEGDPEEVGRKRELTLKCLTQVVHILLTSSSDQRQVETSTILENYFKLLNSDHSALPKQRRSRRWESQFIALQIKMLNTITAMLDCADRPVLQAIFLNSNCFEHLIRLLQNCKLFLNAHSMVADKNEKDLANQLLTEISEDQVFQGRLDCLAVSSIQALTAVMKNSPAAKEVFKERIGYMHMFEVLKSLGQPSLELLKELMNMAVEGDHTSVGILGISNVHPLLVLIQWLPELESHDLQIFISDWLKKICCINKQSRTTCVNANMGIRIIETLESHSSLHRICAENLIAIHGSLGSQSVSSEEVRRLLRLLRVDESELIHPYTIPVTRAILTMARKLSFESALQYFNLSHSMAGISVPAIQKWPGSAFSFTAWFCLDQDQLTLGTTNQRGKRKQLYSFFTGSGMGFEAFITHSGMLVVAVCTKREYATVMLPDHSFCDSLWHNITIVHMPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKSVSKLISAGTQDSEWGCPTSLEGQLGSVIVFHEALQPPQVKALYLAGPNCLSPWKCQDCDMADLPSSLLLQYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHLMEGQTSEGMNENTVNELITPIEQDCMALASTKASESRLEKNLVATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGTLMDVNVLVAIQLLIEQVSLEKNTQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHGCTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLMFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGMGLLLNEAPVNTSLIKNLVNQIINADPVINFKDLLSVVYISHRTHVNVRVALCGKILQILQSQPDAAYQISQQVGWQDTFVKLFLKENFENVNSLHKHGKAVSVKENKNVSTEKLDDEKMTLADVSSDHWSLEDSQSLNSNTPLFQEDGSEGELSFKSENQEEFWHSNTSHLSLDLSGTDSCELSESGSQMPDSSPSTPSPVESIKSFSMRSDKERSITNEMDFSDDFLESQEGCEEELLQLLTNILNYVMSKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLILLQKMLEWAVTENRDAKSSPVTAENAFRLMLIIQDFLQSEGLVNSNVWTEKLLEDTTQLLDCLSVWYSETPVWVKLSQIQLQLLLEFIGRGSLQVCAVASAKLNALLQTKVIENQDEACFILGKLEHILNRSIKEQTEIYSFLIPLFRTLVSKIYELLFMNLHLPSLPFTNGSASFFEDFQEYCNSNEWQVYIEKYIVPYMKQYEVHTFYDGHEYMALYWKNCYEALMVNMHKRDREGGESKLKFQEYFVEPFNRKARQENLRYNNMIKQLSNQQLATFRRWKAIRLYLTCERGPWAERKQNQIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGVQHLQPSSDSLLLEVVKQVKLSDMEEDKLELLEEDMIARVNIDEKEEQDQKEKLVLTEDCELITVIDIIPGRLEITTQHIYFHDNSIEKEDGIGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKVYSRLLSLHSPNSYGTRSPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMQEKYETFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFNLGYLQVSKELVNDVILPRWAKSPEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEVIQKQTKTEISTLNLFQHLPQLKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITISMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTVNGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQAMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLASKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTIQKGQYMRTLRPPCESSLFLTIPNLAISWEGHIVVCSSLEEKPTLKDKNMLHVFSVNGKYLGSQVLNEQISDICIIGEHVITGSLQGLLSIRELHSLNLSITPLAMRLPIHCVSVTKENSHVLVGLEDGKLIVVGVGKPAEMRSSQLSRKLWGSSKRLSQISAGETEYNTQDFK", "length": 2529, "header": "tr|A0A9J7FCE1-1|A0A9J7FCE1_CRIGR Computationally mapped isoform of Neurobeachin-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nbeal1 PE=4 SV=1 CANONICAL=A0A9J7FB75-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1414, "start_aa": "Thr", "end_pos": 1414, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1414", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9H8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768393", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768393", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZZR5-1", "protein_name": "Neurobeachin-like 1", "gene_name": "Nbeal1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAARERLFELWMLYCTKKDPDYLRLWLDNFVLSYEQFLDVDFEKLPTRVDDMPPGISLLPDNILQVLRIQLLHCVQKTADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINHVITMTTLYIQQLKSKKKEKEMADQTSIEEFVIHALAFCESLYDPYRNWRHRISGRILSSVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKESLKCCLLHLFGAIVAGGQKNALQAISPATMEVLMRVLSDCDSWEEGDPEEVGRKRELTLKCLTQVVHILLTSSSDQRQVETSTILENYFKLLNSDHSALPKQGRSRRWESQFIALQIKMLNTITAMLDCADRPVLQAVFLNSNCFEHLIRLLQNCKVFQGQLDCLAVSTIQALTAVMKNSPAAKEVFKERIGYMHMFEVLKSLGQPPQELLKELMNMAVEGDHTSVGILGISNVHPLLVLIQWLPELESHDLQIFISDWLKKICCINKQSRTTCVNANMGIKIIETLESHSSLHRTCAENLIAIHGSLGSQSVSSEELRRLLRLLRVDESECIHPYTIPVTRAILIMARKLSFESALQYFNLSHSMAGISVPPIQKWPGSAFSFTAWFCLDQDPLSLGNANKGGKRKQLYSFFTGSGMGFEAFITHSGMLVVAVCTKREYATVMLPDHSFCDSLWHNITIVHVPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTVEKSKLFTKLISAGTQDSEWGCPTSLEGQLGSVGIFHEALQPPQVKALYLAGPNCLSPWKCQDCDMAGLPSNLLLHYTGKACKNSICLDLSSNCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHVSEGQACEAVSENTVPELITPIEQEGMGVASTKASESRLEKNLIATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGTLMDVNVLMAIQLLIEQVSLEKNTLLLQQMYQCLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHSSICNELSPDDIRTIRTSLYGLIKYFLCKGGSHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLMFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGIGLLLNEVPVNTSLIKNFVNQIINTDPVINFKDLLSIVYICHRAHVNVRVTLCRKILQILQSQPDAAYQISQQVGWQDTFVRLFLKANFENINSLNKHGKTISVKENKNMSTEDVKRTFEKLDDEKMTLADISSDHWSLEDSQSLNSNTPLFQEDSSEGELSFRSENQEEFWHSNTSHLSLDLSGIDASELSDSGSQMPDSSPSTPSPVESTKSFSVQSDKDRTITNEMGFSDDFSFLESQERCEEELFQLLTNILNYVLCKGLEKSDEDTWIERGQVFSALTKPGISSELIRPSDEVKLTLLQKMLEWAVTENRDAKSSPVTAENAFRLMLIIQDFLQSEGLVNSNMWTEKLLEDTTQLLDCLSVWYSENPVWVKLSQIQIQLLLEFIGRGSLQVCAMASAKLNALLQTKVIANQDEACYILGKLEHILSRSIKEQTEIYSFLIPLLRTLVSKIYELLFMNLHLPSLPFTNGSTSVFEDFQEYCNSNEWQVYIEKYIVPYMKQYEAHTFYDGHENMALYWKNCYEALMVNMHKRDREGGESKLKFQEYFVEPFNRKARQENLRYNNMIKQLTSQQLAASRHWKAIRLYLTCERGPWAEKKQNRIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGVQHLQPSSDALLLEVVKQVRLSDVEEDRLELLEEDTAASALTDEKEEQDQKEKLVLTEDCELITVIDIIPGRLEVTTQHIYFHDNSIEKEDGQGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKVYSRLLSLHSPNSYGTRSPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMENTYDVKELIPEFFYFPEFLENQNEFNLGQLQVSKELVNDVILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAIQKQTKTEISTLNLFQHLPELKSFFIEGISDGIPLLKAIIPRNQSRSFMSQGSPELLITVSMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRALSGPFAPGLEITSKLFAVSHDAKLLFSAGHWDNSIQVMSLTKGKLVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLAPKPFQILYGHTDEILSVGISTELDMAVSGSRDGSVIIHTIQKGQYLRTLRPPCESSLFLTIPSLAISWEGHIVVYSSLEEKSTLKDKNLLHVFSINGKYLGSQVLSEQISDMCIVGEHIITGSLQGLLSVRELHSLKLSIAPLAMRLPIHCVSITKEHSHILVGLEDGKLIVVGVGKPAEMRSGQLSRKLWGSSKRLSQISAGETEYNTQDFK", "length": 2688 }, "evidence": [ { "id": "A0A9J7FB75", "url": "https://omabrowser.org/oma/group/A0A9J7FB75/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9PYP2-1", "protein_name": "Neurobeachin like 1", "gene_name": "Nbeal1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAARERLFELWMLYCTKKDPDYLRLWLDNFVLSYEQFLDVDFEKLPTRVDDMPPGISLLPDNILQVLRIQLLHCVQKTADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINHVITMTTLYIQQLKSKKKEKEMADQTSIEEFVIHALAFCESLYDPYRNWRHRISGRILSSVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKDSLKCCLLHLFGAIVAGGQRNALQAISPATMEVLMRVLSDCDSWEEGDPEEVGRKRELTLKCLTQVVHILLTSSSDQRQVETSTILENYFKLLNSDHSALPKQGRSRRWESQFIALQIKMLNTITSMLDCTDRPVLQAIFLNSNCFEHLIRLLQNCKVFQGQLDCLAVSAIQALTAVMKSSPAAKEVFKERIGYMHMFEVLKSLGQPPQELLKELMNMAVEGDHTSVGILGISNVQPLLVLIQWLPELESHDLQIFVSDWLKKICCINKQSRTTCVNANMGIKIIEALESHSSLHRTCAENLIAIHGSLGSQSVSSEEIRRLLRLLRVDESECIHPYTIPVTRAVLTMARKLSFESALQYFNLSHSMAGISVPAIQRWPGSAFSFTAWFCLDQDPLTLGSANKGGKRKQLYSFFTGSGMGFEAFITHSGVLVVAVCTKREYATVMLPDHSFCDSLWHNITIVHMPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKLFTKLISAGTQDSEWGCPTSLEGQLGSVIIFHEALQPPQVKALYLAGPNCLSPWKCQDCDMADLPSNILLHYTGKACKNSICLDLSANCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHFSEGQTSEAMSENTVPELVTPSEQECMGLASTRASESRLEKNLIATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGSQMDVNVLMAIQLLIEQVSLEKNTLLLQQMYQCLLFDFRIWNRGDFPFQIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHGSTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLLFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGIGLLLNEAPVNTSLIKNLVNQIINTDPVINFKDLLSVVYICHRTHVNVRVVLCRKILQILQSQPDAAYQISQQVGWQDTFVRLFLKANFENVNSLNKHGKTVSMKENKNMSTEDVKRNFEKLDDEKMMLADVSSDHWSLEDSQSLNSNTPLFQEDSSEGELSFKSENQEEFWHSNTSHLSLDLSGIDACELSDSGSQVPDSSPSTPSPVESTKSFSLQSDKERSITNEMGFSDDFSFLESQERCEEELFQLLTNILNYVMCKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLTLLQKMLEWAITENRDAKSSPVTAENAFRLMLIVQDFLQSEGLVNSNMWTEKLLEDATQLLDCLSVWYSENPAWVKLSQIQTQLLLEFIGRGSLQVCAMASAKLNALLQTKVIENQDEACYILGKLEHILSRSIKEQTEIYSFLIPLLRTLVSKIYELLFMNLHLPSLPFTNGSASFFEDFQEYCNSEEWQVYIEKYIVPYMKQYEAHTFYDGHENMALYWKNCYEALMVNMHKRDREGGESKLKFQEYFVEPFNRKARQENLRYNNMIKQLNSQQLAAVRRWKAIRLYLTCERGPWAEKKQNRIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGVQHLQPSSDSLLLEVVKQVKLSDMEEDKLELLEEDMAARVNIDEKEEQNQKEKLVLTEDCELITVIDIIPGRLEVTTQHIYFHDNSVEKEDGLGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKIYSRLLSLHSPTGYGTRSPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFNLGHLQVSKELVNDVILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAIQKQTKTEISTLNLFQHLTELKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITVSMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTISGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQVMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLAPKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTVQKGQYMRTLRLPCESSLFLTIPSLAISWEGHIVVYSSLEEKSVLKDKNLLHLFSINGKYLGSQVLSEQISDMCIIGEHIITGSLQGLLSIRELHSLKLSVTPLAMRLPIHCVSITKEYSHILVGLEDGKLIVVGVGKPAEMRSGQLSRKLWGSSKRLSQISAGETEYNTQDCK", "length": 2688 }, "evidence": [ { "id": "A0A9J7FB75", "url": "https://omabrowser.org/oma/group/A0A9J7FB75/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M9MRV7-1", "protein_name": "Neurobeachin-like protein 1", "gene_name": "CG1295", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDNKKDIYNLWVQYTTKNDETHFRQFVARFVAIWRSQLQLDFQAENCPMWHEVQPDSGPHLGRLPDELLPAIGKFIIVARDVCETEGKLEEQAIEEVAILVDCLVIVCRHFDNILSIIKYEYKPNLIAILSRVFKQQMELPQSVPAISHLFSSFSAFLEVMYDPYLTWRSFVRGQSADYSRLSYKPHSVHVEIVPFIYDCFQEEKLIRYAEIGESLLNILGAVICGSQLQLKVQKSLNSTSTLTNRNTNALTTSSLAPCSGDGLLDCDNLRNGMKAICPATVSITMSILRQWESANNLRRVALQCYALMVIVLQKSSPEERQIDLVTLVQLYCDALQELLATKHFDSGDANFDITSDADQDVAIDMAALSSTVAAVKFFVTGDAGVSEAVSDSNLLELLTNLPKLIKPWHISHSSSLCSTMEALAILARHSPQSASQLRQGERIERLFTSLQEYGSPTVELLDTCFMLGYDESEHFLLLPEVMLRLLNWVPTLQEREQLHVTSLVLKGCTDNYRTKTVACGSHIIKAVCGCLLTAESLAENCVQNLIKLIEELSKLSIVPAELKCIFSLLRQGTKFPQFKQLQQTLVVIALQSLRGSNSCAEFFSIEQPTDGILVPDIRNWTISGSYGFIFHILVRFNQLKEQSNSRRMLLTLQTASGSGFEVFVQPNGNVVVAALTRREYLTSSTATKTLMDGQWHYLTVAITPPKRPFSYSQINIYVDFVQKLSATLKVQAVNEPFTVCSIGAVVAPPQPGEVAKTGNMPRSSSQESGSSGYKGMLPSLLERTLSANVSNYFTLPMRTQTAFDPNVKNFPIGMQDTVFGEQTCLNGHLGGVLLADPTTSLKTIFDAGANFSSIFSQDNDLLELNSRFVFCYAPGAIWHGTCQDLIPGGKYPGRINAQHCKIVKIQETINSIGGISAILPMLHRLITLDQTTDISIGSVSEESLSCAPTPSAEEFTDWEMLSSNSYTEWKMLQHPLASFLCLLRYLTHEHETNQEQLLSSECLAIVGTMLQRCPPSLFDVNALMATHLLMESLQGHKAEAGGQLLDALYAHIVFDFAIWSRLQFQITLGHAQYLSAMIKNDRKFFRKRYGVQFVLDVVRQYYSTPDSISDDDAKTIRATLFGIIKFYLQKDVNIKEVNSMITFLASVRQDVVLVEFLEMMTFYVRGKNCKDQMVLLLHEPQSANLLYNFFVDKSYSNEIQEAAIRFISGLLATSRVHQKYKQVLRLYDQTTEQSMFPGFFSFITPLSLSSTILFHLVDEMLGLQPDYAGLIFLVYHVSSCDLPVKLEIAKRLLQTTFVKQQSTVAMAKQTGWQESIARLLIRKPITSSPPDEEKRRSFGINLDVLLEDNSNFLAQADLITFSEQEIGLAQLQQQQQEELSDSGLILNEIQASVTEAATVIESEIKELAESVSGAVVENANSLFSVIRQTTHDLQDTFESLTQGSSTDTADGSQTPSIQREESLSSDTSSQSPHGPPKKSDSLESTSAFDFVADGDVDTEEQLVYLVSNTLFNIFWRGIPNDHPQCWQERGQVLGCINLLALNNELITSHLSLRLRILEMAVQASLFDLSEHGSQTLVNQENASHILRMVYELVVLGSNEDESKKCSTKLLDGVLALLDALMIFQQGSSDDWSDMIRLCLGLLLKCSHHPNPGIVAMATAKLHAILQSRSTEDPAELSYLLYSINRALDNAIEVGNPEEYSFLMPVMKALLEKCRVAFNLDSTLPDLPSTSSGPVFFNDFQMYSTSKKWRNFIERMVKPLYDRYQRDIELHLWEPINRFWAECYEACKAASKQRATNQAENRRLFQQKIYMPWKVRQVEEMQRLQAAALQHKTIDSHIRKRWKTAKRFLYGPRGPWYTGEVDEEFWKLSQHENVARMRLKLEPQLYPNKHENAANLRDNATSAYDTKEISEFDSTIKNAVVRDFLADDESSQLEEELRQLIDTQAQQDVALEKLVMSQDCELITLMTKVKGRIEVNQSVFTFVDLSPPTEDGSKYDFRFSTNKIREVHLRKYNLRRSALEIFLVDQTSYFLNFTTKTRNKVFTKIVGLPLPNILYGSGRSPAELLRASGLTQRWINREISNFEYLMYLNTIAGRSYNDLSQYPVFPWILADYTSDVLDLTDPKSFRDLSKPIGCINPKNEAEVRGKYDSFEDPSGAIPKFHYGTHYSNSAGVLHYLLRVEPFTSLHIDLQSGRFDVADRQFHSIPQTWKLLMDNPNDVKELIPEFFYFPEFLKNMNKFDLGHLQITKEKVDDVILPAWATTPEEFIAIHRRALESEYVSQHLHHWIDLIFGYKQKGPKAAEALNVFYYCSYEGAVDLDKITNPVEREAVEGMINNFGQVPSQLLREPHPRRLTQDETALKLVRAELRRPDLTQFLDKVVQYYCELSTPKDPIVYLSPPRSPPRSFLQLSPDVLVSISKSTILGCNSWLSFDKDQGFLLEIDATTANLKNRKRIFGPFHSSQQPHSQLFAVSTDGKLLYAGGIWDNSLRVYNLNKGKAVASVTRHLDIITCIALDNCGSYLVTGSRDCTCIVWSIQTNQQGGGSTNNIPVHALTGQSHLQAITQLNTQNSYSPKPLTVLYGHDDAISSVAIYTELDLVVSGSLDGTVNVYTLQEGQFVRTLKPIGCTESCVQISFVTLSYHGHIAFSALDDTSHSVHVYSINGCSLGSKYVSGRVTGLASASDYLVVADDAGDITMSRLHGLKPVFDIPLHVPIQTVVVTPGNTHILAPLRDGRLAVIAVQLPSGGNKKHSVLNV", "length": 2754 }, "evidence": [ { "id": "A0A9J7FB75", "url": "https://omabrowser.org/oma/group/A0A9J7FB75/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q6ZS30-2", "protein_name": "Neurobeachin-like protein 1", "gene_name": "NBEAL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASRERLFELWMLYCTKKDPDYLKLWLDTFVSSYEQFLDVDFEKLPTRVDDMPPGISLLPDNILQVLRIQLLQCVQKMADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINYVITMTTLYIQQLKSKKKEKEMADQTCIEEFVIHALAFCESLYDPYRNWRHRISGRILSTVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKESLKCCLLHLFGAIVAGGQRNALQAISPATMEVLMRVLADCDSWEDGDPEEVGRKAELTLKCLTEVVHILLSSNSDQRQVETSTILENYFKLLNSDHSALPNQRRSRQWENRFIALQIKMLNTITAMLDCTDRPVLQAIFLNSNCFEHLIRLLQNCKVFQGQLDCLAISTIQALTAVMNKSPAAKEVFKERIGYTHMLEVLKSLGQPPLELLKELMNMAVEGDHTSVGILGISNVQPLLLLIQWLPELQSHDLQIFISDWLKRICCINRQSRTTCVNANMGIRIIETLDLHSSLHQTCAENLIAIHGSLGSQSVSSEEIRRLLRLLRVDESESVHPYVTPVTRAILTMARKLSLESALQYFNLSHSMAGISVPPIQKWPGSAFSFSAWFCLDQDQLTLGIANKGGKRKQLYSFFTGSGMGFEAFITHSGMLVVAVCTKREYATVMLPDHSFCDSLWHNITVVHMPGKRPFGQSFVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSSPITPHRTSFGGILSSASWGGTIEKSKLITKLISAGTQDSEWGCPTSLEGQLGSVIIFYEPLQPPQVKALYLAGPNCLSPWKCQESDMADLPGNILLYYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHFSEGQIPEEKNESTVPESVTPVEGDWLVWTSTKASESRLERNLVATFILIVKHFIQRHPINQGNLIHSHGVATLGALLQKVPSTLMDVNVLMAVQLLIEQVSLEKNMQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGNGCKYNELSLDDIRTIRTSLYGLIKYFLCKGGSHEEIQSIMGYIAATNEEEQLFGILDVLFSLLRTSPTRGQLFLLLFEPGNADILYALLLNQKYSDRLREIIFKIMEQMLKCTNVYERSKQHIRLREVGYSGLGLLLNEALVNTSLIKNLTHQIINTDPVINFKDLLSVVYISHRAHINVRVAICRKVLQILQFQPDAAHQISQQVGWQDTLVRLFLKAKFENGNTLHKHSRAVLMKDNDKNMSTEDTKKNSDEKTDEEKITSFASANVSSDQWSLEDRHSLDSNTPLFPEDSSVGELSFKSENQEEFWHSNPSHLSLDLSGIDSCEMSDSGSQVPDSLPSTPSPVESTKSFSVHSDRESSITNDMGFSDDFSLLESQERCEEELLQLLTHILNYVMCKGLEKSDDDTWIERGQVFSALSKPGISSELLRPSDEIKLTLLQKMLEWAISENREAKTNPVTAENAFRLVLIIQDFLQSEGLVNSNMWTEKLLEDMMLLFDCLSVCYSESPVWVKLSQIQIQLLLGFIGRGNLQVCAMASAKLNTLLQTKVIENQDEACYILGKLEHVLSQSIKEQTEIYSFLIPLVRTLVSKIYELLFMNLHLPSLPFTNGSSSFFEDFQEYCNSNEWQVYIEKYIVPYMKQYEAHTFYDGHENMALYWKDCYEALMVNMHKRDREGGESKLKFQELFVEPFNRKARQENLRYNNMLKQLSSQQLATLRRWKAIQLYLTCERGPWAKRKQNPIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGIQHSQPSSDTLLLEVVKQVKVSDMVEDKLDLPEEDITARVNVDEKEEQDQKEKLVLMEDCELITIIDVIPGRLEITTQHIYFYDGSIEKEDGVGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKIYSRLLSLHSPNSYYGSRSPQELFKASGLTQKWVNREISNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPAVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNPYDVKELIPEFFYFPEFLENQNQFNLGRLQISKELVNDVILPKWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAVQKPTKIDTSTLNLFQHLPELKSFFIEGISDGIPLLKATIPKNQYRSFMSQGSPELLITISMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKTQRSINGSFAPGLEITSKLFVVSHDAKLLFSAGYWDNSIQVMSLTKGKIISHIIRHMDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGVPVGLASKPFQILYGHTNEVLSVGISTELDMAVSGSRDGTVIIHTIQKGQYMRTLRPPCESSLFLTIPNLAISWEGHIVVYSSTEEKTTLKDKNALHLFSINGKYLGSQILKEQVSDICIIGEHIVTGSIQGFLSIRDLHSLNLSINPLAMRLPIHCVCVTKEYSHILVGLEDGKLIVVGVGKPAEMRSGQLSRKFWGSSKRLSQISAGETEYNTQDSK", "length": 2694 }, "evidence": [ { "id": "A0A9J7FB75", "url": "https://omabrowser.org/oma/group/A0A9J7FB75/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1227, "end_pos": 1229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1325, "end_pos": 1327, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1384, "end_pos": 1386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1638, "end_pos": 1640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1679, "end_pos": 1681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1821, "end_pos": 1823, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2347, "end_pos": 2349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2381, "end_pos": 2383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2632, "end_pos": 2634, "annotation": "n_glycosylation_sequon" }, { "start_pos": 600, "end_pos": 602, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FB75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB75" }, { "id": "PS50197", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50197" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BEACH", "eco_id": "ECO_0000259", "start_pos": 2006, "end_pos": 2298, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": [] }, { 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_003615923.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007651914", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651914" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762860", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7", "locus": {} } ], "crossref": [ { "id": "A0A9J7F9W7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7F9W7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762860", "url": "https://www.ncbi.nlm.nih.gov/gene/100762860", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762860", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762860", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MWCIPYP", "url": "https://omabrowser.org/oma/group/MWCIPYP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F9W7", "url": "https://www.orthodb.org/?gene=A0A9J7F9W7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007651914", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651914", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATEVHMSGPMCLIENVKGQLIANQEALGILEDITQPVVVVAIVGLYRTGKSYLMNKLAGKQTGFSLGSTVQSHTKGIWMWCVPHPQKPGHTLVLLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNSMGPINQQAMDHLNYVTELTGRIRSKSSPDQDDVEDSEEFVRFFPDFIWTLRDFSLELKLNGKPISADEYLENSLKLIQGSGQRDRVKEFNLPQLCIHKFFPKKKCFVFERPVHGKKLGQLELMQDQDLDFDFMEQVAEFCSYVFHCSKVKMLSGGIKVNGPRLKSLVVTYVNTISSGGLPCIENAVLALSQTENAAAVQKAIAHYDQQMKQKLQLPTENLQELMKLHRASEKEAIKIFMENSFKDVNQVFMTQLEIELETKQEEFLKKNEQASSDRCSALLQDIFSPLEEDLKQGSYYKPGGYQLFIQKIQELKKKYYEEPRKGVQAEEVLQKFLQSKDDVTDTVLQTDQELTEKEKDSEVEYVKAEAAKTIAKMQQEMQQQIEQLLKQKEKSHEEHMKQLTEMMEKGQDQMREMQQKNEQMLQEKEKCHKEHMKQLAEKMEKAQVQLREMQQKNEQLLQQKEKSHEEHRKQLTKMMEKAQDQMREMQQKNAQLLQQKDKSHEEHMKRLTEKMEEALCQMREIQQKNTQLLQQKVKSYREHLKHLIEIFSEDTESL", "length": 686, "header": "tr|A0A9J7F9W7-1|A0A9J7F9W7_CRIGR Isoform 1 of Guanylate-binding protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100762860 PE=3 SV=1 CANONICAL=A0A9J7F9W7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F9W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7/entry", "sequence": { "sequence": "MATEVHMSGPMCLIENVKGQLIANQEALGILEDITQPVVVVAIVGLYRTGKSYLMNKLAGKQTGFSLGSTVQSHTKGIWMWCVPHPQKPGHTLVLLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNSMGPINQQAMDHLNYVTELTGRIRSKSSPDQDDVEDSEEFVRFFPDFIWTLRDFSLELKLNGKPISADEYLENSLKLIQGSGQRDRVKEFNLPQLCIHKFFPKKKCFVFERPVHGKKLGQLELMQDQDLDFDFMEQVAEFCSYVFHCSKVKMLSGGIKVNGPRLKSLVVTYVNTISSGGLPCIENAVLALSQTENAAAVQKAIAHYDQQMKQKLQLPTENLQELMKLHRASEKEAIKIFMENSFKDVNQVFMTQLEIELETKQEEFLKKNEQASSDRCSALLQDIFSPLEEDLKQGSYYKPGGYQLFIQKIQELKKKYYEEPRKGVQAEEVLQKFLQSKDDVTDTVLQTDQELTEKEKDSEVEYVKAEAAKTIAKMQQEMQQQIEQLLKQKEKSHEEHMKQLTEMMEKGQDQMREMQQKNEQMLQEKEKCHKEHMKQLAEKMEKAQVQLREMQQKNEQLLQQKEKSHEEHRKQLTKMMEKAQDQMREMQQKNAQLLQQKDKSHEEHMKRLTEKMEEALCQMREIQQKNTQLLQQKVKSYREHLKHLIEIFSEDTESL", "length": 686, "header": "tr|A0A9J7F9W7-1|A0A9J7F9W7_CRIGR Isoform 1 of Guanylate-binding protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100762860 PE=3 SV=1 CANONICAL=A0A9J7F9W7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEJ3/entry", "sequence": { "sequence": "MATEVHMSGPMCLIENVKGQLIANQEALGILEDITQPVVVVAIVGLYRTGKSYLMNKLAGKQTGFSLGSTVQSHTKGIWMWCVPHPQKPGHTLVLLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNSMGPINQQAMDHLNYVTELTGRIRSKSSPDQDDVEDSEEFVRFFPDFIWTLRDFSLELKLNGKPISADEYLENSLKLIQGSGQRDRVKEFNLPQLCIHKFFPKKKCFVFERPVHGKKLGQLELMQDQDLDFDFMEQVAEFCSYVFHCSKVKMLSGGIKVNGPRLKSLVVTYVNTISSGGLPCIENAVLALSQTENAAAVQKAIAHYDQQMKQKLQLPTENLQELMKLHRASEKEAIKIFMENSFKDVNQVFMTQLEIELETKQEEFLKKNEQASSDRCSALLQDIFSPLEEDLKQGSYYKPGGYQLFIQKIQELKKKYYEEPRKGVQAEEVLQKFLQSKDDVTDTVLQTDQELTEKEKDSEGEAQWNMLKLKLQRL", "length": 505, "header": "tr|A0A9J7KEJ3-1|A0A9J7KEJ3_CRIGR Computationally mapped isoform of Guanylate-binding protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762860 PE=3 SV=1 CANONICAL=A0A9J7F9W7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762860", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762860", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GE08-1", "protein_name": "Guanylate binding protein 1", "gene_name": "Gbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDMTLQIHMPGPVCLIENVKGQLRANQKALEILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKKTGFSLGSTVQAHTKGIWMWCVPHPNKANHMLVLLDTEGLGDVEKGDNQNDCWIFSLAILLSSTFVYNSMGAINQQAMDQLHYVTELTDRIRARSSPDQDDGVEDSAEFVSFFPDFVWTLRDMTLKMEVDGLQVTADEYLEISLKLKEGSSKEVEKYNLPRLCIRKFFPKKKCFVFYPPTEWKRLSQLETLQENEIDSEFLQQVAEFCLYVFKECKAKTLPGGIIVNGPRLETLVLTYLSAISSGDLPCMENAVLTLAQIENSAAVEKAITHYDQQMSQRVQLPTETLQELLDLHRTCEREAIEIFLRVSFKDEDHSFQMKLGSRLEERWNDFCKRNMEVSSNRCWALLQDIFRPLEESVKQGTYSKPGGYYLFVQETQRLKEKYQGQPKKGLQADEVLQKYLQSKEAITTAILQTDQSLTEKEKEIEVERKKAESAQAAAKLLEETQKKNEKLMEQKERSYQEHMKQLTEKMENDRIQLKAEQERILSLKLQEQKQLLQEGFREESRKLQEEMKNVEKRYKETMDHMKAESSKTKEEMQRKYEQMLEKDRNHQEHTLHMIEKMERDRAQLVAEQEKTMTLILQERELQLRNELAEERRKHEKEIQDIVAENRQIILKLESERAESAENTIKMLTELNELNLKTLGQKQKTLEDHLIQLTEQRDKDTASLMAEQGKIFDSKLQEQEENFNKKIRAQSQQHREEIWKIKKEGFSCSLM", "length": 780 }, "evidence": [ { "id": "A0A9J7F9W7", "url": "https://omabrowser.org/oma/group/A0A9J7F9W7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P32455-1", "protein_name": "Guanylate-binding protein 1", "gene_name": "GBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASEIHMTGPMCLIENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTETLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLQEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACTIS", "length": 592 }, "evidence": [ { "id": "A0A9J7F9W7", "url": "https://omabrowser.org/oma/group/A0A9J7F9W7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cellular response to type II interferon", "id": "GO:0071346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071346", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" } ], "pmid": "" }, { "name": "regulation of defense response", "id": "GO:0031347", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031347", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9W7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7F9W7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W7" }, { "id": "PS51715", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51715" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GB1/RHD3-type G", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 278, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7F9X3-1", "uniprot_ac": "A0A9J7F9X3", "uniprot_id": "A0A9J7F9X3_CRIGR", "mass": { "chemical_mass": 37738.0, "monoisotopic_mass": 37738.0 }, "refseq": { "ac": "XP_003513589", "name": "transmembrane protease serine 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513589" }, "gene_names": [ { "name": "Tmprss12", "type": "recommended", "evidence": [ { "id": "A0A9J7F9X3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9X3" } ] }, { "name": "Tmprss12", "type": "synonym", "evidence": [ { "id": "XP_003513589", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513589" } ] } ], "protein_names": [ { "name": "Transmembrane protease serine 12", "type": 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This record is derived from a genomic sequence (NW_003615996.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252800", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252800" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA28" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam117b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA28", "locus": {} } ], "crossref": [ { "id": "A0A9J7FA28", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FA28", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767817", "url": "https://www.ncbi.nlm.nih.gov/gene/100767817", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767817", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767817", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FA28", "url": "https://www.orthodb.org/?gene=A0A9J7FA28", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14972", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14972", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14972:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14972:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252800", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252800", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FA28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSRGGGCTTSSLPAAARAPPVPEVRLHHPLAQAFPQAPSSRSPPPSTPRRPRAAVSGGGTMSQRVRRNGSPTPAGALAGGAVGPAGGPGSRLQPMRATVPFQLKQQQQHGSPTRGGGGGSGGGNNGGCSGASGPSGGAVARRGGPRTASRSTSPTRAAARRRRRRRRGAAARTSPTVATQTGASATSTRGTSPTRGTAPVARSSPPRPQPPPPLLGTVSSPSSSPTHLWPGEVSAAPPPARVRHRRRSPEQGRPSAEKRSPSAPVCKAGDKTRPPSSSPSSIIRRTSSLDTLAAPYLAGHWPRESRGQATPCMRDKATQTESAWAEEYAEKKKGSHKRSSSWGSTEQLKEIAKLRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQSQAPAPKSTLVPVVPITKSTGSRFRNSVEGLNQEIEIIIKETGEKEEQLVPQDIPDGHRAPPPLAQRSSSTRSIDTQTPGGADKSSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLADPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTTTLLQPISMASLSANTEQDRVSRGTSTVLPSASLHAPPEPIEEAEG", "length": 658, "header": "tr|A0A9J7FA28-1|A0A9J7FA28_CRIGR Isoform 1 of LOW QUALITY PROTEIN: protein FAM117B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam117b PE=4 SV=1 CANONICAL=A0A9J7FA28-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FA28-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA28/entry", "sequence": { "sequence": "MRSRGGGCTTSSLPAAARAPPVPEVRLHHPLAQAFPQAPSSRSPPPSTPRRPRAAVSGGGTMSQRVRRNGSPTPAGALAGGAVGPAGGPGSRLQPMRATVPFQLKQQQQHGSPTRGGGGGSGGGNNGGCSGASGPSGGAVARRGGPRTASRSTSPTRAAARRRRRRRRGAAARTSPTVATQTGASATSTRGTSPTRGTAPVARSSPPRPQPPPPLLGTVSSPSSSPTHLWPGEVSAAPPPARVRHRRRSPEQGRPSAEKRSPSAPVCKAGDKTRPPSSSPSSIIRRTSSLDTLAAPYLAGHWPRESRGQATPCMRDKATQTESAWAEEYAEKKKGSHKRSSSWGSTEQLKEIAKLRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQSQAPAPKSTLVPVVPITKSTGSRFRNSVEGLNQEIEIIIKETGEKEEQLVPQDIPDGHRAPPPLAQRSSSTRSIDTQTPGGADKSSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLADPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTTTLLQPISMASLSANTEQDRVSRGTSTVLPSASLHAPPEPIEEAEG", "length": 658, "header": "tr|A0A9J7FA28-1|A0A9J7FA28_CRIGR Isoform 1 of LOW QUALITY PROTEIN: protein FAM117B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam117b PE=4 SV=1 CANONICAL=A0A9J7FA28-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 73, "start_aa": "Thr", "end_pos": 73, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr73", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA28" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767817", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767817", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 386, "end_pos": 388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 474, "end_pos": 476, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" }, { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 73 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 386, "end_pos": 388 }, { "start_pos": 474, "end_pos": 476 }, { "start_pos": 475, "end_pos": 477 }, { "start_pos": 516, "end_pos": 518 }, { "start_pos": 530, "end_pos": 532 }, { "start_pos": 69, "end_pos": 71 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FA56-1", "uniprot_ac": "A0A9J7FA56", "uniprot_id": "A0A9J7FA56_CRIGR", "mass": { "chemical_mass": 67177.0, "monoisotopic_mass": 67177.0 }, "refseq": { "ac": "XP_027251670", "name": "guanylate-binding protein 2-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251670" }, "gene_names": [ { "name": "LOC100762688", "type": "recommended", "evidence": [ { "id": "A0A9J7FA56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ] }, { "name": "LOC100762688", "type": "synonym", "evidence": [ { "id": "XP_027251670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251670" } ] } ], "protein_names": [ { "name": "Guanylate-binding protein 2-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FA56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56/entry#names_and_taxonomy" } ] }, { "name": "guanylate-binding protein 2-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027251670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251670" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251670", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251670" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762688", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56", "locus": {} } ], "crossref": [ { "id": "A0A9J7FA56", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FA56", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762688", "url": "https://www.ncbi.nlm.nih.gov/gene/100762688", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762688", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762688", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FA56", "url": "https://www.orthodb.org/?gene=A0A9J7FA56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251670", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251670", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASDINMPSPVCLIENSKQQLVPNEEALKILSTIDQPMVVVAIVGFYRTGKSYLMNKLAGKQKGFSLGFMAQSHTKGIWMWCLPHPQKPGHTLVLLDTEGLEDVQKGDNQNDCWIFTLAVLLSSTFIYNSTGTINQQAMDQLHYVTELTDLIKSKSSPEQSGVDDSANFVGFFPTFVWALRDFSLELEADGKPITADEYLEYALTLMKGSDKKSESFNKPRLCIRTFFPKRKCFVFDRPAQRKYLSKLETISEEDLSSEFVEQVEEFTSYIFSYSNVKTLSGGIIVNGPRLQSLVLAYVNAISSGELPCMENAVLTLAQIENAAAVQKAIEHYEEQMNQKVQFPTETFKELLDLHRPIESEAIEVFIKKSFKDIDQKFQKKLVEQLVAKRDAFIKKNMDVSLAHCSDLLKDIFGSLEEEVKQGTFSKPGGYYLFLQKKRELEKKYNQTTGKGLQAEEVLKKYFESKDDVVETLLKTDQSLMEAAKEIEVERIKAEAAEATNRALAEKQNKYELLMAEKDKSYQEHMKQLTEKMQQERVQLMAENEKIISLKLQEQERLLKEGFQNESRKLHQEIESIKKSQSSGKCTIL", "length": 589, "header": "tr|A0A9J7FA56-1|A0A9J7FA56_CRIGR Isoform 1 of Guanylate-binding protein 2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762688 PE=3 SV=1 CANONICAL=A0A9J7FA56-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FA56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56/entry", "sequence": { "sequence": "MASDINMPSPVCLIENSKQQLVPNEEALKILSTIDQPMVVVAIVGFYRTGKSYLMNKLAGKQKGFSLGFMAQSHTKGIWMWCLPHPQKPGHTLVLLDTEGLEDVQKGDNQNDCWIFTLAVLLSSTFIYNSTGTINQQAMDQLHYVTELTDLIKSKSSPEQSGVDDSANFVGFFPTFVWALRDFSLELEADGKPITADEYLEYALTLMKGSDKKSESFNKPRLCIRTFFPKRKCFVFDRPAQRKYLSKLETISEEDLSSEFVEQVEEFTSYIFSYSNVKTLSGGIIVNGPRLQSLVLAYVNAISSGELPCMENAVLTLAQIENAAAVQKAIEHYEEQMNQKVQFPTETFKELLDLHRPIESEAIEVFIKKSFKDIDQKFQKKLVEQLVAKRDAFIKKNMDVSLAHCSDLLKDIFGSLEEEVKQGTFSKPGGYYLFLQKKRELEKKYNQTTGKGLQAEEVLKKYFESKDDVVETLLKTDQSLMEAAKEIEVERIKAEAAEATNRALAEKQNKYELLMAEKDKSYQEHMKQLTEKMQQERVQLMAENEKIISLKLQEQERLLKEGFQNESRKLHQEIESIKKSQSSGKCTIL", "length": 589, "header": "tr|A0A9J7FA56-1|A0A9J7FA56_CRIGR Isoform 1 of Guanylate-binding protein 2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762688 PE=3 SV=1 CANONICAL=A0A9J7FA56-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762688", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762688", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cellular response to type II interferon", "id": "GO:0071346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071346", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ], "pmid": "" }, { "name": "regulation of defense response", "id": "GO:0031347", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031347", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 565, "end_pos": 567, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FA82-1", "uniprot_ac": "A0A9J7FA82", "uniprot_id": "A0A9J7FA82_CRIGR", "mass": { "chemical_mass": 172931.0, "monoisotopic_mass": 172931.0 }, "refseq": { "ac": "XP_027255109", "name": "zinc finger MYM-type protein 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255109" }, "gene_names": [ { "name": "Zmym4", "type": "recommended", "evidence": [ { "id": "A0A9J7FA82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82" } ] }, { "name": "Zmym4", "type": "synonym", "evidence": [ { "id": "XP_027255109", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255109" } ] } ], "protein_names": [ { "name": "Zinc finger MYM-type protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FA82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82/entry#names_and_taxonomy" } ] }, { "name": "zinc finger MYM-type protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027255109", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255109" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255109", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255109" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zmym4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82", "locus": {} } ], "crossref": [ { "id": "100766296", "url": "https://www.ncbi.nlm.nih.gov/gene/100766296", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051284", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051284", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766296", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766296", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FA82", "url": "https://www.orthodb.org/?gene=A0A9J7FA82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45736:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45736:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12012", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12012", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24900", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24900", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255109", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255109", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FA82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FA82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4F6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEREVETGPRKRFEQKSDAVFDEIVENCGVMDTEMSEDTDHNLTPTLASMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVSSDNEDEQDFSSKDNLVSSIHTDDSLEVERRASHHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFCLVRENSKETFPGKEKNRDLTYHEREKRLDKPHKGLDSRLKSSFFDKAANQVEETLHTHLPQNPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAVAPQQGLLDRVKDEPENAQEYNHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASPGMNKMLPSVPAAAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARLPPLLTKKTCSSCSKDILNPKDVISAQFENSTTSKDFCSQSCLSTYELKKKPIVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHVLQIEGQSKKFCSSMCVTSYKQKSAKITPCALCKSLRSSAEMIENTNSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPTGMNSSVVPLSQGQVIVSIPTGSAVSAGGGNTPAVSPTSISSSAAAGLQRLAAQSQHVGFARSVVKLRCQHCNRLFATKPELLDYKGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIIKETVRFSGADKSFCSEGCKLLYKHDLGKRWGSHCKMCSYCLQTSPKLIQNNLGGKVEDFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESLKWRGEIKHFCNLLCILMFCHQQTVCDPPLQNNSASISMVQATSAGPPSLRKDSTPVIANVVSLASAPAAQPTANANSVLQGAVPTVTAKIIGDASTQTDTLKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTEDTPSEPQVMVVPVPVPVFVPIPLHLYTQYTPVPFGIPVPMPVPMLIPSSMDNEDKATESIEDIKEKLPTHPFEADLLEMAEMIAEDEEKEKSLSQGESQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNAVQEADSELKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRKKSVVPVEPRSLIQGALQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGGGEHASPSPGSDSLGSVQDQALSQESSEQGCKVRPVKLKEDILSCTFSELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPLQKQESEPDKLTIGKRKRNEDDEAPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDIELSD", "length": 1549, "header": "tr|A0A9J7FA82-1|A0A9J7FA82_CRIGR Isoform 1 of Zinc finger MYM-type protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zmym4 PE=4 SV=1 CANONICAL=A0A9J7FA82-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FA82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82/entry", "sequence": { "sequence": "MAEREVETGPRKRFEQKSDAVFDEIVENCGVMDTEMSEDTDHNLTPTLASMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVSSDNEDEQDFSSKDNLVSSIHTDDSLEVERRASHHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFCLVRENSKETFPGKEKNRDLTYHEREKRLDKPHKGLDSRLKSSFFDKAANQVEETLHTHLPQNPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAVAPQQGLLDRVKDEPENAQEYNHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASPGMNKMLPSVPAAAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARLPPLLTKKTCSSCSKDILNPKDVISAQFENSTTSKDFCSQSCLSTYELKKKPIVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHVLQIEGQSKKFCSSMCVTSYKQKSAKITPCALCKSLRSSAEMIENTNSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPTGMNSSVVPLSQGQVIVSIPTGSAVSAGGGNTPAVSPTSISSSAAAGLQRLAAQSQHVGFARSVVKLRCQHCNRLFATKPELLDYKGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIIKETVRFSGADKSFCSEGCKLLYKHDLGKRWGSHCKMCSYCLQTSPKLIQNNLGGKVEDFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESLKWRGEIKHFCNLLCILMFCHQQTVCDPPLQNNSASISMVQATSAGPPSLRKDSTPVIANVVSLASAPAAQPTANANSVLQGAVPTVTAKIIGDASTQTDTLKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTEDTPSEPQVMVVPVPVPVFVPIPLHLYTQYTPVPFGIPVPMPVPMLIPSSMDNEDKATESIEDIKEKLPTHPFEADLLEMAEMIAEDEEKEKSLSQGESQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNAVQEADSELKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRKKSVVPVEPRSLIQGALQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGGGEHASPSPGSDSLGSVQDQALSQESSEQGCKVRPVKLKEDILSCTFSELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPLQKQESEPDKLTIGKRKRNEDDEAPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDIELSD", "length": 1549, "header": "tr|A0A9J7FA82-1|A0A9J7FA82_CRIGR Isoform 1 of Zinc finger MYM-type protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zmym4 PE=4 SV=1 CANONICAL=A0A9J7FA82-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE0/entry", "sequence": { "sequence": "MDTEMSEDTDHNLTPTLASMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVSSDNEDEQDFSSKDNLVSSIHTDDSLEVERRASHHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFCLVRENSKETFPGKEKNRDLTYHEREKRLDKPHKGLDSRLKSSFFDKAANQVEETLHTHLPQNPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAVAPQQGLLDRVKDEPENAQEYNHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASPGMNKMLPSVPAAAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARLPPLLTKKTCSSCSKDILNPKDVISAQFENSTTSKDFCSQSCLSTYELKKKPIVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHVLQIEGQSKKFCSSMCVTSYKQKSAKITPCALCKSLRSSAEMIENTNSLGKTELFCSVNCLSAYRVKMVTSAGVQVQCNSCKTSAIPQYHLAMSDGSIRNFCSYSCVVAFQNLFNKPTGMNSSVVPLSQGQVIVSIPTGSAVSAGGGNTPAVSPTSISSSAAAGLQRLAAQSQHVGFARSVVKLRCQHCNRLFATKPELLDYKGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIIKETVRFSGADKSFCSEGCKLLYKHDLGKRWGSHCKMCSYCLQTSPKLIQNNLGGKVEDFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESLKWRGEIKHFCNLLCILMFCHQQTVCDPPLQNNSASISMVQATSAGPPSLRKDSTPVIANVVSLASAPAAQPTANANSVLQGAVPTVTAKIIGDASTQTDTLKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTEDTPSEPQVMVVPVPVPVFVPIPLHLYTQYTPVPFGIPVPMPVPMLIPSSMDNEDKATESIEDIKEKLPTHPFEADLLEMAEMIAEDEEKEKSLSQGESQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNAVQEADSELKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRKKSVVPVEPRSLIQGALQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGGGEHASPSPGSDSLGSVQDQALSQESSEQGCKVRPVKLKEDILSCTFSELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPLQKQESEPDKLTIGKRKRNEDDEAPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDIELSD", "length": 1518, "header": "tr|A0A9J7JFE0-1|A0A9J7JFE0_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 4 isoform X4 OS=Cricetulus griseus OX=10029 GN=Zmym4 PE=4 SV=1 CANONICAL=A0A9J7FA82-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUG1/entry", "sequence": { "sequence": 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"length": 1531, "header": "tr|A0A9J7JUG1-1|A0A9J7JUG1_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zmym4 PE=4 SV=1 CANONICAL=A0A9J7FA82-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F6/entry", "sequence": { "sequence": "MAEREVETGPRKRFEQKSDAVFDEIVENCGVMDTEMSEDTDHNLTPTLASMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVSSDNEDEQDFSSKDNLVSSIHTDDSLEVERRASHHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFCLVRENSKETFPGKEKNRDLTYHEREKRLDKPHKGLDSRLKSSFFDKAANQVEETLHTHLPQNPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAVAPQQGLLDRVKDEPENAQEYNHGQQQKTQEGELKISAVFSVSGSPLAPQLTTGFQPSLASPGMNKMLPSVPAAAVRVSCSGCKKILQKGQTAYQRKGSTQLFCSTLCLTGYTVPPARLPPLLTKKTCSSCSKDILNPKDVISAQFENSTTSKDFCSQSCLSTYELKKKPIVTINTNSISTKCSMCQKNAVIRHEVNYQNVVHKLCSDACFSKFRSANNLTMNCCENCGGYCYSGSGQCHVLQIEGQSKKFCSSMCVTSYKQNLFNKPTGMNSSVVPLSQGQVIVSIPTGSAVSAGGGNTPAVSPTSISSSAAAGLQRLAAQSQHVGFARSVVKLRCQHCNRLFATKPELLDYKGKMFQFCGKNCSDEYKKINNVMAMCEYCKIEKIIKETVRFSGADKSFCSEGCKLLYKHDLGKRWGSHCKMCSYCLQTSPKLIQNNLGGKVEDFCCEECMSKYTVLFYQMAKCDGCKRQGKLSESLKWRGEIKHFCNLLCILMFCHQQTVCDPPLQNNSASISMVQATSAGPPSLRKDSTPVIANVVSLASAPAAQPTANANSVLQGAVPTVTAKIIGDASTQTDTLKLPPSQPPRLLKNKALLCKPITQTKATSCKPHTQNKECQTEDTPSEPQVMVVPVPVPVFVPIPLHLYTQYTPVPFGIPVPMPVPMLIPSSMDNEDKATESIEDIKEKLPTHPFEADLLEMAEMIAEDEEKEKSLSQGESQTSEQELFLDTKIFEKDQGSTYSGDLESEAVSTPHSWEEELNHYALKSNAVQEADSELKQFSKGETEQDLEADFPSESFDPLNKGQGIQARSRTRRRHRDGFPQPRRRGRKKSVVPVEPRSLIQGALQGCSVSGMTLKYMYGVNAWKNWVQWKNAKEEQGDLKCGGGEHASPSPGSDSLGSVQDQALSQESSEQGCKVRPVKLKEDILSCTFSELSLGLCQFIQEVRRPNGEKYDPDSILYLCLGIQQYLFENGRIDNIFTEPYSRFMIELTKLLKIWEPTILPNGYMFSRIEEEHLWECKQLGAYSPIVLLNTLLFFNTKYFQLKNVTEHLKLSFAHVMRRTRTLKYSTKMTYLRFFPPLQKQESEPDKLTIGKRKRNEDDEAPVGVEMAENTDNPLRCPVRLYEFYLSKCSESVKQRNDVFYLQPERSCVPNSPMWYSTFPIDPGTLDTMLTRILMVREVHEELAKAKSEDSDIELSD", "length": 1460, "header": "tr|A0A9J7K4F6-1|A0A9J7K4F6_CRIGR Computationally mapped isoform of Zinc finger MYM-type protein 4 isoform X5 OS=Cricetulus griseus OX=10029 GN=Zmym4 PE=4 SV=1 CANONICAL=A0A9J7FA82-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766296", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766296", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1396, "end_pos": 1398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 622, "end_pos": 624, "annotation": "n_glycosylation_sequon" }, { "start_pos": 714, "end_pos": 716, "annotation": "n_glycosylation_sequon" }, { "start_pos": 860, "end_pos": 862, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FA82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA82" }, { "id": "SM00746", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRASH", "eco_id": "ECO_0000259", "start_pos": 341, "end_pos": 377, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1396, "end_pos": 1398 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 480, "end_pos": 482 }, { "start_pos": 57, "end_pos": 59 }, { "start_pos": 622, "end_pos": 624 }, { "start_pos": 714, "end_pos": 716 }, { "start_pos": 860, "end_pos": 862 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"mass": { "chemical_mass": 8728.0, "monoisotopic_mass": 8728.0 }, "refseq": { "ac": "XP_027241884", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241884" }, "gene_names": [ { "name": "LOC107977509", "type": "recommended", "evidence": [ { "id": "A0A9J7FAA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAA7" } ] }, { "name": "LOC107977509", "type": "synonym", "evidence": [ { "id": "XP_027241884", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241884" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7FAA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAA7/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "XP_027241884", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241884" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003617811.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253562", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253562" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rab31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCD6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCD6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01860", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01860", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"Protein" ] }, { "id": "A0A9J7FCD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDC0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNSGGIRLGTQSLQASRRCC", "length": 195, "header": "tr|A0A9J7FCD6-1|A0A9J7FCD6_CRIGR Isoform 1 of small monomeric GTPase OS=Cricetulus griseus OX=10029 GN=Rab31 PE=3 SV=1 CANONICAL=A0A9J7FCD6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FAG7-1", 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"isoform_ac": "A0A9J7FCD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6/entry", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNSGGIRLGTQSLQASRRCC", "length": 195, "header": "tr|A0A9J7FCD6-1|A0A9J7FCD6_CRIGR Isoform 1 of small monomeric GTPase OS=Cricetulus griseus OX=10029 GN=Rab31 PE=3 SV=1 CANONICAL=A0A9J7FCD6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDC0/entry", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGITTVPVLFIHHF", "length": 174, "header": "tr|A0A9J7FDC0-1|A0A9J7FDC0_CRIGR Computationally mapped isoform of small monomeric GTPase OS=Cricetulus griseus OX=10029 GN=Rab31 PE=3 SV=1 CANONICAL=A0A9J7FCD6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 38, "start_aa": "Thr", "end_pos": 38, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr38", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme", "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAG7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAG7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAG7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757810", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6" } ], "pmid": "" }, { "name": "phagocytic vesicle membrane", "id": "GO:0030670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030670", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3GRJ8-1", "G3GY22-1", "G3H2D6-1", "G3HID1-1", "A0A9J7FY79-1", "G3IBI0-1", "G3HIM4-1", "G3HLW5-1", "G3I0B0-1", "G3H8L7-1", "G3IMU0-1", "G3HQ45-1", "G3HX83-1", "G3H515-1", "G3HRK4-1", "G3HWS3-1", "G3I185-1", "G3I2E9-1", "G3IHJ9-1", "G3I5Q9-1", "G3H3P1-1", "G3HGA7-1", "A0A9J7K0Q7-1", "G3I8B8-1", "A0A9J7FPY4-1", "A0A9J7JNI7-1", "A0A9J7JTM0-1", "G3HXK0-1", "G3I1T6-1", "A0A8C2M8V3-1", "G3HAT4-1", "G3HBU1-1", "A0A8C2MG78-1", "A0A9J7JFJ5-1", "A0A061I5F7-1", "A0A9J7GMX4-1", "G3H3X0-1", "A0A8C2MG41-1", "A0A8C2MJU2-1", "A0A8C2MKJ3-1", "A0A8C2QMP3-1", "A0A9J7F720-1", "A0A061IFE4-1", "A0A061HZZ7-1", "A0A8C2M6H7-1", "A0A8C2M9W6-1", "A0A9J7H2L4-1", "A0A8C2MH13-1", "A0A8C2MMV7-1", "A0A8C2MPE2-1", "A0A8C2LL65-1", "A0A3L7HXE9-1", "A0A8C2LGZ8-1", "A0A8C2LIB5-1", "A0A8C2LNU7-1", "A0A9J7JYH7-1", "A0A8C2LV21-1", "A0A9J7GDV9-1", "A0A8C2QEY0-1", "A0A9J7FVQ6-1", "A0A9J7K0X9-1", "A0A9J7J7P8-1", "A0A8C2M2X0-1", "A0A8C2MAV7-1", "A0A8C2MQL3-1", "A0A3L7HA69-1", "A0A8C2LLE7-1", "A0A061HWM0-1", "A0A061I5K5-1", 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251925", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251925" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttll12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9", "locus": {} } ], "crossref": [ { "id": "A0A9J7FAJ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FAJ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769125", "url": "https://www.ncbi.nlm.nih.gov/gene/100769125", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769125", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769125", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FAJ9", "url": "https://www.orthodb.org/?gene=A0A9J7FAJ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46088", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46088", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46088:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46088:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03133", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03133", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251925", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251925", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FAJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHKAGGGRHRALTSIMEGLHGQQRGSPGHAERLSERMLDEFVALHGPALRASGVPERLWARLLYKLEHEVFDAGELFGIMQVEEVEEEAEDEASREAQRKQPNPGSELCYKVIVTSESGVRADDPNSIFLIDHAWTCRVEHARKQLQQVPGLLHRMANLMGIEFHGEVPSPEAVDLVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADMPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWAPADLLDLSSSTPEPPAKYYQAILEENKEKLPLTISPVARPQGHIFRVHSDVKQVLCHLTHPRFTFTESEADADILYHFSHFKDYRALSQERPQVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERQGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLREDVGNVKFDIRYVVLLRSVKPLSLFVYDVFWLRFSNRPFALNDLDDYEKHFTVMNYDPDVVLKQVHYDKFIPQFEKQYPEFPWSGVQTEIFKAFIELFQVACAKPPPMGLCDYPSSRAVYAVDLMLKWDSHPDGKRVMQPQILEVNFNPDCERACRYHPTFFNDVFSTLFLDETNDCHVTRII", "length": 655, "header": "tr|A0A9J7FAJ9-1|A0A9J7FAJ9_CRIGR Isoform 1 of Tubulin--tyrosine ligase-like protein 12 OS=Cricetulus griseus OX=10029 GN=Ttll12 PE=4 SV=1 CANONICAL=A0A9J7FAJ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FAJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9/entry", "sequence": { "sequence": "MHKAGGGRHRALTSIMEGLHGQQRGSPGHAERLSERMLDEFVALHGPALRASGVPERLWARLLYKLEHEVFDAGELFGIMQVEEVEEEAEDEASREAQRKQPNPGSELCYKVIVTSESGVRADDPNSIFLIDHAWTCRVEHARKQLQQVPGLLHRMANLMGIEFHGEVPSPEAVDLVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADMPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWAPADLLDLSSSTPEPPAKYYQAILEENKEKLPLTISPVARPQGHIFRVHSDVKQVLCHLTHPRFTFTESEADADILYHFSHFKDYRALSQERPQVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERQGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLREDVGNVKFDIRYVVLLRSVKPLSLFVYDVFWLRFSNRPFALNDLDDYEKHFTVMNYDPDVVLKQVHYDKFIPQFEKQYPEFPWSGVQTEIFKAFIELFQVACAKPPPMGLCDYPSSRAVYAVDLMLKWDSHPDGKRVMQPQILEVNFNPDCERACRYHPTFFNDVFSTLFLDETNDCHVTRII", "length": 655, "header": "tr|A0A9J7FAJ9-1|A0A9J7FAJ9_CRIGR Isoform 1 of Tubulin--tyrosine ligase-like protein 12 OS=Cricetulus griseus OX=10029 GN=Ttll12 PE=4 SV=1 CANONICAL=A0A9J7FAJ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0016881", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9" } ], "pmid": "" }, { "name": "catalytic activity, acting on a protein", "id": "GO:0140096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FAJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAJ9" }, { "id": "PF25556", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25556" } ], "ann_type": 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"https://www.ncbi.nlm.nih.gov/protein/XP_007652987" }, "gene_names": [ { "name": "LOC100750349", "type": "recommended", "evidence": [ { "id": "A0A9J7FAK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAK0" } ] }, { "name": "LOC100750349", "type": "synonym", "evidence": [ { "id": "XP_007652987", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652987" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: nuclear autoantigen Sp-100", "type": "synonym", "evidence": [ { "id": "XP_007652987", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652987" }, { "id": "A0A9J7FAK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAK0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616897.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652987", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652987" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAK0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100750349", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAK0", "locus": {} } ], "crossref": [ { "id": "100750349", "url": "https://www.ncbi.nlm.nih.gov/gene/100750349", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043563", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043563", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750349", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750349", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FAK0", "url": "https://www.orthodb.org/?gene=A0A9J7FAK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46386", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46386", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46386:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46386:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03172", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03172", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652987", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652987", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FAK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSFFAEEVSWETLLLSMLAVIPKKKSFNEIFFDYFKEHKIEIAHAIPKLFPFLESLKDRSFITDKIYADSYEACRNLVPVEKVVYNVLDHLEKLFGWSFLCILFNRTNLNAYPGLREIHESLQTELEDNYLSQRSKQDQKLVTVQPHYEQGPGDSCSLGSLTRTPSDNASSDGSIQSRKGRSPESTWDLKSKHTNTDHLVFHPRESHRNNYGCTQAGPNLCTHENWTGPCFVKQENLQKPGTKQNQEDEVIVISSEGSECSDEDDEHELLELFTLTPRHRRQMDEEDEDHVXPGLRNSELPSGAQTSCFLTHHYWGRSKSPTVHSLHLTFSDTCGDLERVTGFQILVSHKDLAQLTPWKYHSSCKTQHVGTTNCQNENKELTHQSPQFWESI", "length": 394, "header": "tr|A0A9J7FAK0-1|A0A9J7FAK0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: nuclear autoantigen Sp-100 OS=Cricetulus griseus OX=10029 GN=LOC100750349 PE=4 SV=1 CANONICAL=A0A9J7FAK0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FAK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAK0/entry", "sequence": { "sequence": "MSLSFFAEEVSWETLLLSMLAVIPKKKSFNEIFFDYFKEHKIEIAHAIPKLFPFLESLKDRSFITDKIYADSYEACRNLVPVEKVVYNVLDHLEKLFGWSFLCILFNRTNLNAYPGLREIHESLQTELEDNYLSQRSKQDQKLVTVQPHYEQGPGDSCSLGSLTRTPSDNASSDGSIQSRKGRSPESTWDLKSKHTNTDHLVFHPRESHRNNYGCTQAGPNLCTHENWTGPCFVKQENLQKPGTKQNQEDEVIVISSEGSECSDEDDEHELLELFTLTPRHRRQMDEEDEDHVXPGLRNSELPSGAQTSCFLTHHYWGRSKSPTVHSLHLTFSDTCGDLERVTGFQILVSHKDLAQLTPWKYHSSCKTQHVGTTNCQNENKELTHQSPQFWESI", "length": 394, "header": "tr|A0A9J7FAK0-1|A0A9J7FAK0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: nuclear autoantigen Sp-100 OS=Cricetulus griseus OX=10029 GN=LOC100750349 PE=4 SV=1 CANONICAL=A0A9J7FAK0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"yes" } }, { "uniprot_canonical_ac": "A0A9J7FBD8-1", "uniprot_ac": "A0A9J7FBD8", "uniprot_id": "A0A9J7FBD8_CRIGR", "mass": { "chemical_mass": 77830.0, "monoisotopic_mass": 77830.0 }, "refseq": { "ac": "XP_027255425", "name": "connector enhancer of kinase suppressor of ras 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255425" }, "gene_names": [ { "name": "Cnksr1", "type": "recommended", "evidence": [ { "id": "A0A9J7FBD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD8" } ] }, { "name": "Cnksr1", "type": "synonym", "evidence": [ { "id": "XP_027255425", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255425" } ] } ], "protein_names": [ { "name": "Connector enhancer of kinase suppressor of ras 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FBD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD8/entry#names_and_taxonomy" } ] }, { "name": "connector enhancer of kinase suppressor of ras 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027255425", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255425" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255425", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255425" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cnksr1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD8", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBD8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBD8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01260", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01260", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06748", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06748", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769136", "url": "https://www.ncbi.nlm.nih.gov/gene/100769136", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769136", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769136", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FBD8", "url": "https://www.orthodb.org/?gene=A0A9J7FBD8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12844", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12844", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12844:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12844:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255425", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255425", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FAQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FAQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFL8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPVEAWTPAKVAAWLRGLDDSLQDYPFEDWELPGKYLLQLCPQSLEALTVWPLGHQELILEGVEQLRALGSKLQTENLQSLAQGLLERTQAFQSLVHGRLGDCAETPADVLAAAVELVREAHALLSWLNRYLFSHLNDFSACQEIGVLCGELGQVLQEDCPEAEKESNTLRICSHVAGICHNILSCCPEELLQQRAVLEQVQLDDPSLLSLQSLEIHTINNCLHFVSQAPPSSQILPGDEIIQINEQVVVGWPHKNVVRELLREPARISLVMKKTPVPESPSQMPLDSPHPQSQSLPLTPVSPRVPSEGLFAFDLSAGGSPGPSPAWTDSTSLDAKSLPTAPEAPSTLPEKTAEPPETSGHPDKSPILGQKKSKGVATRLSRRRVSCRELGLPDCDGWLLLRKVPSGFMGPRWRRCWFVLKGHTLYWYHQPQDEKAEGLINLSNYSLESGHDQKKKYVFQLTHDVYKPFVFAAETLSDLSMWVRHLITCISKYQTPGRAPSARKEDCYSETEAEDPDEEAGSRSASPGPAPTWSDTSPVASPLQSPRTSFGSSADSSDRALEGMVQGLRQGGVSLLGQPQPLTHEQWRSSFMRRNRDPHLNERVHRVRALQSTLKAKLQELQALDEVLGDPELTGAKFRQWKEQNQELYSEGLSTWGGMRAQNSSPAPTSDSSGQSPQPLPSDPEGPSQLVPLAPENILQPPDL", "length": 705, "header": "tr|A0A9J7FBD8-1|A0A9J7FBD8_CRIGR Isoform 1 of Connector enhancer of kinase suppressor of ras 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cnksr1 PE=4 SV=1 CANONICAL=A0A9J7FBD8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FAQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAQ8/entry", "sequence": { "sequence": "MEPVEAWTPAKVAAWLRGLDDSLQDYPFEDWELPGKYLLQLCPQSLEALTVWPLGHQELILEGVEQLRALGSKLQTENLQSLAQGLLERTQAFQSLVHGRLGDCAETPADVLAAAVELVREAHALLSWLNRYLFSHLNDFSACQEIGVLCGELGQVLQEDCPEAEKESNTLRICSHVAGICHNILSCCPEELLQQRAVLEQVQLDDPSLLSLQSLEIHTINNCLHFVSQVGWPHKNVVRELLREPARISLVMKKTPVPESPSQMPLDSPHPQSQSLPLTPVSPRVPSEGLFAFDLSAGGSPGPSPAWTDSTSLDAKSLPTAPEAPSTLPEKTAEPPETSGHPDKSPILGQKKSKGVATRLSRRRVSCRELGLPDCDGWLLLRKVPSGFMGPRWRRCWFVLKGHTLYWYHQPQDEKAEGLINLSNYSLESGHDQKKKYVFQLTHDVYKPFVFAAETLSDLSMWVRHLITCISKYQTPGRAPSARKEDCYSETEAEDPDEEAGSRSASPGPAPTWSDTSPVASPLQSPRTSFGSSADSSDRALEGMVQGLRQGGVSLLGQPQPLTHEQWRSSFMRRNRDPHLNERVHRVRALQSTLKAKLQELQALDEVLGDPELTGAKFRQWKEQNQELYSEGLSTWGGMRAQNSSPAPTSDSSGQSPQPLPSDPEGPSQLVPLAPENILQPPDL", "length": 684, "header": "tr|A0A9J7FAQ8-1|A0A9J7FBD8_CRIGR Computationally mapped isoform of Connector enhancer of kinase suppressor of ras 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cnksr1 PE=4 SV=1 CANONICAL=A0A9J7FBD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD8/entry", "sequence": { "sequence": "MEPVEAWTPAKVAAWLRGLDDSLQDYPFEDWELPGKYLLQLCPQSLEALTVWPLGHQELILEGVEQLRALGSKLQTENLQSLAQGLLERTQAFQSLVHGRLGDCAETPADVLAAAVELVREAHALLSWLNRYLFSHLNDFSACQEIGVLCGELGQVLQEDCPEAEKESNTLRICSHVAGICHNILSCCPEELLQQRAVLEQVQLDDPSLLSLQSLEIHTINNCLHFVSQAPPSSQILPGDEIIQINEQVVVGWPHKNVVRELLREPARISLVMKKTPVPESPSQMPLDSPHPQSQSLPLTPVSPRVPSEGLFAFDLSAGGSPGPSPAWTDSTSLDAKSLPTAPEAPSTLPEKTAEPPETSGHPDKSPILGQKKSKGVATRLSRRRVSCRELGLPDCDGWLLLRKVPSGFMGPRWRRCWFVLKGHTLYWYHQPQDEKAEGLINLSNYSLESGHDQKKKYVFQLTHDVYKPFVFAAETLSDLSMWVRHLITCISKYQTPGRAPSARKEDCYSETEAEDPDEEAGSRSASPGPAPTWSDTSPVASPLQSPRTSFGSSADSSDRALEGMVQGLRQGGVSLLGQPQPLTHEQWRSSFMRRNRDPHLNERVHRVRALQSTLKAKLQELQALDEVLGDPELTGAKFRQWKEQNQELYSEGLSTWGGMRAQNSSPAPTSDSSGQSPQPLPSDPEGPSQLVPLAPENILQPPDL", "length": 705, "header": "tr|A0A9J7FBD8-1|A0A9J7FBD8_CRIGR Isoform 1 of Connector enhancer of kinase suppressor of ras 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cnksr1 PE=4 SV=1 CANONICAL=A0A9J7FBD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FEU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEU2/entry", "sequence": { "sequence": "MEPVEAWTPAKVAAWLRGLDDSLQDYPFEDWELPGKYLLQLCPQSLEALTVWPLGHQELILEGVEQLRALGSKLQTENLQSLAQGLLERTQAFQSLVHGRLGDCAETPADVLAAAVELVREAHALLSWLNRYLFSHLNDFSACQEIGVLCGELGQVLQEDCPEAEKESNTLRICSHVAGICHNILSCCPEELLQQRAVLEQVQLDDPSSLEIHTINNCLHFVSQAPPSSQILPGDEIIQINEQVVVGWPHKNVVRELLREPARISLVMKKTPVPESPSQMPLDSPHPQSQSLPLTPVSPRVPSEGLFAFDLSAGGSPGPSPAWTDSTSLDAKSLPTAPEAPSTLPEKTAEPPETSGHPDKSPILGQKKSKGVATRLSRRRVSCRELGLPDCDGWLLLRKVPSGFMGPRWRRCWFVLKGHTLYWYHQPQDEKAEGLINLSNYSLESGHDQKKKYVFQLTHDVYKPFVFAAETLSDLSMWVRHLITCISKYQTPGRAPSARKEDCYSETEAEDPDEEAGSRSASPGPAPTWSDTSPVASPLQSPRTSFGSSADSSDRALEGMVQGLRQGGVSLLGQPQPLTHEQWRSSFMRRNRDPHLNERVHRVRALQSTLKAKLQELQALDEVLGDPELTGAKFRQWKEQNQELYSEGLSTWGGMRAQNSSPAPTSDSSGQSPQPLPSDPEGPSQLVPLAPENILQPPDL", "length": 700, "header": "tr|A0A9J7FEU2-1|A0A9J7FEU2_CRIGR Computationally mapped isoform of Connector enhancer of kinase suppressor of ras 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cnksr1 PE=4 SV=1 CANONICAL=A0A9J7FBD8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFL8/entry", "sequence": { "sequence": "MEPVEAWTPAKVAAWLRGLDDSLQDYPFEDWELPGKYLLQLCPQSLEALTVWPLGHQELILEGVEQLRALGSKLQTENLQSLAQGLLERTQAFQSLVHGRLGDCAETPADVLAAAVELVREAHALLSWLNRYLFSHLNDFSACQEIGVLCGELGQVLQEDCPEAEKESNTLRICSHVAGICHNILSCCPEELLQQRAVLEQVQLDDPSSLEIHTINNCLHFVSQVGWPHKNVVRELLREPARISLVMKKTPVPESPSQMPLDSPHPQSQSLPLTPVSPRVPSEGLFAFDLSAGGSPGPSPAWTDSTSLDAKSLPTAPEAPSTLPEKTAEPPETSGHPDKSPILGQKKSKGVATRLSRRRVSCRELGLPDCDGWLLLRKVPSGFMGPRWRRCWFVLKGHTLYWYHQPQDEKAEGLINLSNYSLESGHDQKKKYVFQLTHDVYKPFVFAAETLSDLSMWVRHLITCISKYQTPGRAPSARKEDCYSETEAEDPDEEAGSRSASPGPAPTWSDTSPVASPLQSPRTSFGSSADSSDRALEGMVQGLRQGGVSLLGQPQPLTHEQWRSSFMRRNRDPHLNERVHRVRALQSTLKAKLQELQALDEVLGDPELTGAKFRQWKEQNQELYSEGLSTWGGMRAQNSSPAPTSDSSGQSPQPLPSDPEGPSQLVPLAPENILQPPDL", "length": 679, "header": "tr|A0A9J7FFL8-1|A0A9J7FFL8_CRIGR Computationally mapped isoform of Connector enhancer of kinase suppressor of ras 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cnksr1 PE=4 SV=1 CANONICAL=A0A9J7FBD8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 533, "start_aa": "Thr", "end_pos": 533, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr533", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FAQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAQ8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7FAR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1293, "end_pos": 1295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1411, "end_pos": 1413, "annotation": "n_glycosylation_sequon" }, { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FAR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FAR6" }, { "id": "PF15035", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rootletin-like coiled-coil", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 253, "start_aa": "Glu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": 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"photoreceptor ankyrin repeat protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027251825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251825" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027251825.1. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255783", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255783" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB70" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771138", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB70", "locus": {} } ], "crossref": [ { "id": "A0A9J7FB70", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FB70", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771138", "url": "https://www.ncbi.nlm.nih.gov/gene/100771138", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB70" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB70" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771138", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771138", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": 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[], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 314, "end_pos": 316 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 392, "end_pos": 394 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 457, "end_pos": 459 }, { "start_pos": 501, "end_pos": 503 }, { "start_pos": 59, "end_pos": 61 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FB93-1", "uniprot_ac": "A0A9J7FB93", "uniprot_id": "A0A9J7FB93_CRIGR", "mass": { "chemical_mass": 46990.0, "monoisotopic_mass": 46990.0 }, "refseq": { "ac": "XP_003502078", "name": "BTB/POZ domain-containing protein KCTD18", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502078" }, "gene_names": [ { "name": "Kctd18", "type": "recommended", "evidence": [ { "id": "A0A9J7FB93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93" } ] }, { "name": "Kctd18", "type": "synonym", "evidence": [ { "id": "XP_003502078", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502078" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein KCTD18", "type": "synonym", "evidence": [ { "id": "XP_003502078", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502078" }, { "id": "A0A9J7FB93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 146 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613874.1) and transcript sequence (IACG01038542.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502078", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502078" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kctd18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93", "locus": {} } ], "crossref": [ { "id": "cd18372", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18372", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751064", "url": "https://www.ncbi.nlm.nih.gov/gene/100751064", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751064", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751064", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CKAGPKP", "url": "https://omabrowser.org/oma/group/CKAGPKP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FB93", "url": "https://www.orthodb.org/?gene=A0A9J7FB93", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502078", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502078", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKLQESKGRMADHRAEDLLDILRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACIIDRDGQLFKYILDYLHGEVQIPSDEQTRTALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLICNKPTVWVLHYLNTSGASCESRIIGVYATKADGTDAIDKQLGGRIHSKSIFKREAGNNVQYIWSYYSVAELKKMMDAFDAWEGKGVSYWRVPHELIECWTLEERPLHGSLRHMTPIRKRRLLTLSEEDEGVNCKAGPKPVRFLGPSTSTQIKVKNSAAVRVSPVSAAQITSQATANRSQRGSYGKAAQCPVATGASGHAPASPQAQSAENQATQPPPAKVLLSDKKSPSNRVIKLRRTPLCVGTSLPTPSAGSQAGSPQQPSPEASITSGVRTETREDQPDG", "length": 427, "header": "tr|A0A9J7FB93-1|A0A9J7FB93_CRIGR Isoform 1 of BTB/POZ domain-containing protein KCTD18 OS=Cricetulus griseus OX=10029 GN=Kctd18 PE=4 SV=1 CANONICAL=A0A9J7FB93-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FB93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93/entry", "sequence": { "sequence": "MPKLQESKGRMADHRAEDLLDILRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACIIDRDGQLFKYILDYLHGEVQIPSDEQTRTALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLICNKPTVWVLHYLNTSGASCESRIIGVYATKADGTDAIDKQLGGRIHSKSIFKREAGNNVQYIWSYYSVAELKKMMDAFDAWEGKGVSYWRVPHELIECWTLEERPLHGSLRHMTPIRKRRLLTLSEEDEGVNCKAGPKPVRFLGPSTSTQIKVKNSAAVRVSPVSAAQITSQATANRSQRGSYGKAAQCPVATGASGHAPASPQAQSAENQATQPPPAKVLLSDKKSPSNRVIKLRRTPLCVGTSLPTPSAGSQAGSPQQPSPEASITSGVRTETREDQPDG", "length": 427, "header": "tr|A0A9J7FB93-1|A0A9J7FB93_CRIGR Isoform 1 of BTB/POZ domain-containing protein KCTD18 OS=Cricetulus griseus OX=10029 GN=Kctd18 PE=4 SV=1 CANONICAL=A0A9J7FB93-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 393, "start_aa": "Thr", "end_pos": 393, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr393", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751064", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751064", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A425-1", "protein_name": "Potassium channel tetramerization domain containing 18", "gene_name": "KCTD18", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEDKAAEEQGILRLNVRGCLYTARRQSLCRFKDSMLASMFSGRFPLKMDESGACLIDRDGSLFKYLLDYLHGEVRIPEDKQIRIALQEEADYFGIPYPYSLSDHLANEMETYSLRSNVELKKALLDFCDSYDLVCTKPTVWVLHYLSTSGASCESKIIGVYATRADGTDAINKELGTKIHSKSIYKREAGNNVQYIWSYYSEAELKKMMDAFGTWEGRGVSYWRVPQELIECWTLEERSLKGSLHHMPPVHKRRLIDFSEVEDYIPCKVGPKPIRFSGPSTSTHIKVKNSASLKVAACNTSHSAVTLKRPNSESLILHKAASKTVSTACVPEPSNSQVPHGKQSADDKASCQMTFNISVSRKPVSSRAVKLKRTPLFLVTPSQSSSVSSKTSEQDKAAAEIPTTSMVLNKKEPAMLAESIKLKSNKVDG", "length": 430 }, "evidence": [ { "id": "A0A9J7FB93", "url": "https://omabrowser.org/oma/group/A0A9J7FB93/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A827-1", "protein_name": "Potassium channel tetramerization domain containing 18", "gene_name": "Kctd18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGHEAEEMRDILRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACIIDRDGHLFKYILDYLHGEVQTPSDEQTRTALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLVCNKPTVWVLHYLNTSGASCESRIIGVYSTKTDGTDAIDKQLGGRIHSKSIFKREAGNNVQYIWSYYSVAELKKMMDAFDAWEGKGVSYWRVPHELIECWTLEERPLHGSLRHMAPIRKRRLIAFGEEDEGVNCKTGPKPVRFLGPSTSTQIKVKNSASVRVSPANAAQISSQATANRSQRGSCGKAAQCSVATGASGHAPASPNAQSAENQATQPPPAKVLLSDKKSPPHRVIKLRRTPLCVGPSLPTPSAGSQASFPQQPSPEASNTLGVQTENRKDQPDG", "length": 417 }, "evidence": [ { "id": "A0A9J7FB93", "url": "https://omabrowser.org/oma/group/A0A9J7FB93/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E0CZ26-1", "protein_name": "Potassium channel tetramerisation domain containing 18", "gene_name": "Kctd18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLKAELQASKGAMAGHEAEDVLDILRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACIINRDGHLFKYILDYLHGEVQTPSDEQTRAALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLVCNKPTVWVLHYLNTSGASCESRIIGVYATKTDGTDAIDKQLGGRIHSKSIFKREAGNNVQYIWSYYSVAELKKMMDAFDAWEGKGVSYWRVPHELIECWTLEERPLHGSLRHMAPIRKRRLIALREEDEGVNCKTGPKPVRFLGPSTSTQIKVKNSASVRVSPANAAQISSQATANRSHRGSCGKAAQCSVATGASGHAPASPDAQSSENQATHPPPAKVLLSEKKSPPPRVIKLRRTPLRGGPSLPTASAGGQACFPQPPSLEASSSLGVQMETRKDQPDG", "length": 429 }, "evidence": [ { "id": "A0A9J7FB93", "url": "https://omabrowser.org/oma/group/A0A9J7FB93/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1SI68-1", "protein_name": "Potassium channel tetramerization domain containing 18", "gene_name": "KCTD18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESHKAEEEVVDILRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACVIDRDGHLFKYLLDYLHGEVHIPTEEQTRIALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLVCNKPTVWVLHYLNTSGASCESRIIGVYSTKTDGTDAIDKQLGGRIHSKSIFKREAGNNVQYIWSYYSVAELKKMMDAFDAWEGKGVSYWRVPHELIECWTLEERPLLGSLHHMAPIRKRRLTAFNEEEEEGENCKTGPKPVRFLGPSTSTQIKVKNSASVRVSPARASVNTAAGGKAAQRCAPTRVPSLVGTAGAENGAGHPPPAKVLLSDKKATPPRVIKLKRTPLCATGPSPPACPAARTVGTPEPPPNAPGALDLWTENGQRQTD", "length": 404 }, "evidence": [ { "id": "A0A9J7FB93", "url": "https://omabrowser.org/oma/group/A0A9J7FB93/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q29RJ0-1", "protein_name": "BTB/POZ domain-containing protein KCTD18", "gene_name": "KCTD18", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGHKAEEEVLDILRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACVIDRDGHLFKYLLDYLHGEVHIPTEEQTRVALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLVCNKPTVWVLHYLNTSGASCESRIIGVYSTKTDGTDAIDKQLGGRIHSKSIFKREAGNNVQYIWSDYSVAELKKMMDAFDAWEGKGVSYWRVPHELIECWTLEERPLLGSLSHMAPIRKRRLIVNEEEEEGVNCKTGPKPVRFLGPSTSTQIKVKNSASIRVSPASAPQPWPRATANLAAGGRAVQRSAQSKVPTPVGTGLPEHPQAAQGPGAPENGATHLPPAKVLLSDKTATPHRVIKLRRTPLCATGSSLPACTTPRPAGPPEPPPDALSPLGTWTENGQDQTK", "length": 422 }, "evidence": [ { "id": "A0A9J7FB93", "url": "https://omabrowser.org/oma/group/A0A9J7FB93/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PI47-1", "protein_name": "BTB/POZ domain-containing protein KCTD18", "gene_name": "KCTD18", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGHKAEEEVLDVLRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACVIDRDGRLFKYLLDYLHGEVQIPTDEQTRIALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLVCNKPTVWVLHYLNTSGASCESRIIGVYATKTDGTDAIEKQLGGRIHSKGIFKREAGNNVQYIWSYYSVAELKKMMDAFDAWEGKGVSYWRVPHELIECWTLEERPLLGSLRHMAPIRKRRLITFNEADESVNYKTGPKPVRFLGPSTSTQIKVKNSASVTVSPASAIQTSAGATANRFQSGSRRKAAQRSAPSRATALVGTGAPGHPQASPGAASAENGGTHLPPAKVLLSDKKPTPQRVIKLKRTPLCATAPCLPSPTATRQANSLKPLPGEAARALGVRTENGKNKGN", "length": 426 }, "evidence": [ { "id": "A0A9J7FB93", "url": "https://omabrowser.org/oma/group/A0A9J7FB93/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FB93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB93" }, { "id": "SM00225", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 121, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 393 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 321, "end_pos": 323 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", 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"field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FBA4-1", "uniprot_ac": "A0A9J7FBA4", "uniprot_id": "A0A9J7FBA4_CRIGR", "mass": { "chemical_mass": 86934.0, "monoisotopic_mass": 86934.0 }, "refseq": { "ac": "XP_027253879", "name": "protocadherin beta-18-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253879" }, "gene_names": [ { "name": "LOC107977069", "type": "recommended", "evidence": [ { "id": "A0A9J7FBA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4" } ] }, { "name": "LOC107977069", "type": "synonym", "evidence": [ { "id": "XP_027253879", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253879" } ] } ], "protein_names": [ { "name": "Protocadherin beta-18-like", "type": "synonym", "evidence": [ { "id": "A0A9J7FBA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4/entry#names_and_taxonomy" } ] }, { "name": "protocadherin beta-18-like", "type": "synonym", "evidence": [ { "id": "XP_027253879", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253879" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253879" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107977069", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBA4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBA4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "107977069", "url": "https://www.ncbi.nlm.nih.gov/gene/107977069", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:107977069", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977069", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FBA4", "url": "https://www.orthodb.org/?gene=A0A9J7FBA4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF98", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF98", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253879", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMEPGVTAAQQIRQVLIFLAFLGGPSVLSETWNYSVAEEMETGSSIANIIKDMGVGDLTARGARVIFDDYQPYLRLELETGNLLLNKKLDREELCGTREPCILHFQVLLENPLQFFQAELLVEDINDHPPTFLEKLIFLNISEGATPGTSFQMDNAQDLDVGINGVQNYTISPNPYFYLKLKDGGKGRKYPELVLDGPLDREREPSVSLILTATDGGSLPRSATALIQVVVVDVNDNAPKFERTLYEVQVPENSPVDSLVIKVSATDLDTGMNGEISYSFSHVSRDVRKTFKIHPTSGEVHLKAPLDFEVIQSYTINVQAVDGGSLSGKSAIIVQVTDVNDNPPEIVFTSVISPIPENGLSEMVVAVFSVRDQDSGDNSRMMCSIPDNLPFLLKPTFKNFYTLVTESSLDRESRAEYNITITVTDLGTPRLTTQHTITVQVSDVNDNAPAFTQTSYTLFVQENNSPALHIGTISATDSDSGSNAHITYSLLPTHDPQLALSSLISINADNGQLFALRALDYEALQTFEFRVGATDQGLPALSSQALVRVLVLDANDNDPFVLYPTQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLSERDAPKHRLLLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVGQEPAQDEDALTLYLVIALASVSSLFFLSVLLFVGVRLCRRARAASLGGCSVPEAHFPGHLMDFSGRETLSQSYQYEVCLTGVSDTKDFQFLKPVSPDHQVVTCVEENSTSMNGFGYN", "length": 794, "header": "tr|A0A9J7FBA4-1|A0A9J7FBA4_CRIGR Isoform 1 of Protocadherin beta-18-like OS=Cricetulus griseus OX=10029 GN=LOC107977069 PE=4 SV=1 CANONICAL=A0A9J7FBA4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4/entry", "sequence": { "sequence": "MMEPGVTAAQQIRQVLIFLAFLGGPSVLSETWNYSVAEEMETGSSIANIIKDMGVGDLTARGARVIFDDYQPYLRLELETGNLLLNKKLDREELCGTREPCILHFQVLLENPLQFFQAELLVEDINDHPPTFLEKLIFLNISEGATPGTSFQMDNAQDLDVGINGVQNYTISPNPYFYLKLKDGGKGRKYPELVLDGPLDREREPSVSLILTATDGGSLPRSATALIQVVVVDVNDNAPKFERTLYEVQVPENSPVDSLVIKVSATDLDTGMNGEISYSFSHVSRDVRKTFKIHPTSGEVHLKAPLDFEVIQSYTINVQAVDGGSLSGKSAIIVQVTDVNDNPPEIVFTSVISPIPENGLSEMVVAVFSVRDQDSGDNSRMMCSIPDNLPFLLKPTFKNFYTLVTESSLDRESRAEYNITITVTDLGTPRLTTQHTITVQVSDVNDNAPAFTQTSYTLFVQENNSPALHIGTISATDSDSGSNAHITYSLLPTHDPQLALSSLISINADNGQLFALRALDYEALQTFEFRVGATDQGLPALSSQALVRVLVLDANDNDPFVLYPTQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLSERDAPKHRLLLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVGQEPAQDEDALTLYLVIALASVSSLFFLSVLLFVGVRLCRRARAASLGGCSVPEAHFPGHLMDFSGRETLSQSYQYEVCLTGVSDTKDFQFLKPVSPDHQVVTCVEENSTSMNGFGYN", "length": 794, "header": "tr|A0A9J7FBA4-1|A0A9J7FBA4_CRIGR Isoform 1 of Protocadherin beta-18-like OS=Cricetulus griseus OX=10029 GN=LOC107977069 PE=4 SV=1 CANONICAL=A0A9J7FBA4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 146, "start_aa": "Thr", "end_pos": 146, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr146", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:107977069", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977069", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBA4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255883", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255883", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCEVMNIAICIWKVEEENQGCKVTYPLLREFKEMLSFRDVAIDFSAEEWECLGPAQWNLYRDVMLENYSNLVFLGLAFSKPYLVTFLEQRQEPSDVKTQDAATMHPDIKPYKCKECGKACDWNSLLENQRIHSEEKAYMCEECGKTSGSCSVLSEQQIIDTGEKAYKCEECGKVVCTCLGHSSYQEICIGENTYKYEEYGKAFSTHSCLTQHEVEHTEQKFYNCEECGKLFYCPSDLTEHQIIHSQENSFKIEVCSEVFCSPIELSQDQTFCTEENPYQYEECVKAFSACSVLSEHPGVHPGDEAYKCEECGDAFCALHSVSNHLKIHCEVKSYKCEECGKAFPSHLSLIQHKIGHTREKPYQCEECGKMFYCSSNLKQHQITHSQEKPYKCEVCGKVFRTCWQLSKHLRIHSGEKPYKCEECGKAFYTLSYLTQHKLGHTGEKPYKCEECGKTFYYPSVLKEHQAIHSGQKPYRCEECGKDFCTRSGRSRHQRIHTGEKPYKCEQCGKAFSTHSYLSHHKIVHTGHKPYKCEECGKKFYYPSRLKEHQRIHSQENPYKCEICGKAFYTLSYFTQHKLGHTGEKPYKCEECGKTFYYPSILREHQAVHSGKKPYRCEKCGKDFCTRSGRSRHQRIHTGEKPHKCEECGKVFSTHSYLSQHKVVHSGEKPYKCEECGKKFYYPSRLKEHQRIHSQENPYKCEICGNVFCTPKGLSKHQRFHTGEKPYKCEECGKTFYYPSRLKEHQKIHSQENPYKCEICGKAFYTLSYLTQHKLGHTGEKPYKCEECGKTFYYPSILREHQAIHSGKKPYRCEECGKDFYTRSGRSRHQRIHTGEKPYKCEQCGKTFSTHSYLSQHKVVHSGDRPYKCEKCGKMFYYPSRLKEHQRIHSQENPYKCEVCGKVFSAHLELATHLSIHSG", "length": 919, "header": "tr|A0A9J7FGE2-1|A0A9J7FGE2_CRIGR Isoform 1 of Zinc finger protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC107977129 PE=3 SV=1 CANONICAL=A0A9J7FGE2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB4/entry", "sequence": { "sequence": "MEEMLSFRDVAIDFSAEEWECLGPAQWNLYRDVMLENYSNLVFLGLAFSKPYLVTFLEQRQEPSDVKTQDAATMHPDIKPYKCKECGKACDWNSLLENQRIHSEEKAYMCEECGKTSGSCSVLSEQQIIDTGEKAYKCEECGKVVCTCLGHSSYQEICIGENTYKYEEYGKAFSTHSCLTQHEVEHTEQKFYNCEECGKLFYCPSDLTEHQIIHSQENSFKIEVCSEVFCSPIELSQDQTFCTEENPYQYEECVKAFSACSVLSEHPGVHPGDEAYKCEECGDAFCALHSVSNHLKIHCEVKSYKCEECGKAFPSHLSLIQHKIGHTREKPYQCEECGKMFYCSSNLKQHQITHSQEKPYKCEVCGKVFRTCWQLSKHLRIHSGEKPYKCEECGKAFYTLSYLTQHKLGHTGEKPYKCEECGKTFYYPSVLKEHQAIHSGQKPYRCEECGKDFCTRSGRSRHQRIHTGEKPYKCEQCGKAFSTHSYLSHHKIVHTGHKPYKCEECGKKFYYPSRLKEHQRIHSQENPYKCEICGKAFYTLSYFTQHKLGHTGEKPYKCEECGKTFYYPSILREHQAVHSGKKPYRCEKCGKDFCTRSGRSRHQRIHTGEKPHKCEECGKVFSTHSYLSQHKVVHSGEKPYKCEECGKKFYYPSRLKEHQRIHSQENPYKCEICGNVFCTPKGLSKHQRFHTGEKPYKCEECGKTFYYPSRLKEHQKIHSQENPYKCEICGKAFYTLSYLTQHKLGHTGEKPYKCEECGKTFYYPSILREHQAIHSGKKPYRCEECGKDFYTRSGRSRHQRIHTGEKPYKCEQCGKTFSTHSYLSQHKVVHSGDRPYKCEKCGKMFYYPSRLKEHQRIHSQENPYKCEVCGKVFSAHLELATHLSIHSG", "length": 888, "header": "tr|A0A9J7FBB4-1|A0A9J7FGE2_CRIGR Computationally mapped isoform of Zinc finger protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC107977129 PE=3 SV=1 CANONICAL=A0A9J7FGE2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2/entry", "sequence": { "sequence": "MSCEVMNIAICIWKVEEENQGCKVTYPLLREFKEMLSFRDVAIDFSAEEWECLGPAQWNLYRDVMLENYSNLVFLGLAFSKPYLVTFLEQRQEPSDVKTQDAATMHPDIKPYKCKECGKACDWNSLLENQRIHSEEKAYMCEECGKTSGSCSVLSEQQIIDTGEKAYKCEECGKVVCTCLGHSSYQEICIGENTYKYEEYGKAFSTHSCLTQHEVEHTEQKFYNCEECGKLFYCPSDLTEHQIIHSQENSFKIEVCSEVFCSPIELSQDQTFCTEENPYQYEECVKAFSACSVLSEHPGVHPGDEAYKCEECGDAFCALHSVSNHLKIHCEVKSYKCEECGKAFPSHLSLIQHKIGHTREKPYQCEECGKMFYCSSNLKQHQITHSQEKPYKCEVCGKVFRTCWQLSKHLRIHSGEKPYKCEECGKAFYTLSYLTQHKLGHTGEKPYKCEECGKTFYYPSVLKEHQAIHSGQKPYRCEECGKDFCTRSGRSRHQRIHTGEKPYKCEQCGKAFSTHSYLSHHKIVHTGHKPYKCEECGKKFYYPSRLKEHQRIHSQENPYKCEICGKAFYTLSYFTQHKLGHTGEKPYKCEECGKTFYYPSILREHQAVHSGKKPYRCEKCGKDFCTRSGRSRHQRIHTGEKPHKCEECGKVFSTHSYLSQHKVVHSGEKPYKCEECGKKFYYPSRLKEHQRIHSQENPYKCEICGNVFCTPKGLSKHQRFHTGEKPYKCEECGKTFYYPSRLKEHQKIHSQENPYKCEICGKAFYTLSYLTQHKLGHTGEKPYKCEECGKTFYYPSILREHQAIHSGKKPYRCEECGKDFYTRSGRSRHQRIHTGEKPYKCEQCGKTFSTHSYLSQHKVVHSGDRPYKCEKCGKMFYYPSRLKEHQRIHSQENPYKCEVCGKVFSAHLELATHLSIHSG", "length": 919, "header": "tr|A0A9J7FGE2-1|A0A9J7FGE2_CRIGR Isoform 1 of Zinc finger protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC107977129 PE=3 SV=1 CANONICAL=A0A9J7FGE2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBB4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:107977129", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977129", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FGE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 139, "end_pos": 166, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FGE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGE2" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 107, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FBD2-1", "uniprot_ac": "A0A9J7FBD2", "uniprot_id": "A0A9J7FBD2_CRIGR", "mass": { "chemical_mass": 22969.0, "monoisotopic_mass": 22969.0 }, "refseq": { "ac": "XP_003514406", "name": "uncharacterized protein C1orf158 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514406" }, "gene_names": [ { "name": "CUNH1orf158", "type": "recommended", "evidence": [ { "id": "A0A9J7FBD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2" } ] }, { "name": "CUNH1orf158", "type": "synonym", "evidence": [ { "id": "XP_003514406", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514406" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C1orf158 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7FBD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C1orf158 homolog", "type": "synonym", "evidence": [ { "id": "XP_003514406", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514406" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616544.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514406", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514406" } ] }, { "annotation": "Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2#function" }, { "database": "UniProtKB", "id": "ARBA00035003", "url": "https://www.uniprot.org/uniprotkb/ARBA00035003#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBD2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBD2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751219", "url": "https://www.ncbi.nlm.nih.gov/gene/100751219", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751219", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751219", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FBD2", "url": "https://www.orthodb.org/?gene=A0A9J7FBD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31180", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31180", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31180:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31180:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514406", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514406", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFVTSSVPQSFSTPGWQIEKKYSTRVLVGNWVEERRKFTKATDCTPQSIYKKDYVVFPNHRPDDITRWYDIRKMEGLPKKHLITHHQEPSYRYLISTYDDHYNRHNYNPGVPALRTWNGQKLLWLPEKTDFPLPAPPTNYGLLEQLKQKWLVSKTGLRESIYTTSYPRLPACTMSRREHAIRVPLPRLQPIPRS", "length": 194, "header": "tr|A0A9J7FBD2-1|A0A9J7FBD2_CRIGR Isoform 1 of Uncharacterized protein C1orf158 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf158 PE=4 SV=1 CANONICAL=A0A9J7FBD2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBD2/entry", "sequence": { "sequence": "MFVTSSVPQSFSTPGWQIEKKYSTRVLVGNWVEERRKFTKATDCTPQSIYKKDYVVFPNHRPDDITRWYDIRKMEGLPKKHLITHHQEPSYRYLISTYDDHYNRHNYNPGVPALRTWNGQKLLWLPEKTDFPLPAPPTNYGLLEQLKQKWLVSKTGLRESIYTTSYPRLPACTMSRREHAIRVPLPRLQPIPRS", "length": 194, "header": "tr|A0A9J7FBD2-1|A0A9J7FBD2_CRIGR Isoform 1 of Uncharacterized protein C1orf158 homolog OS=Cricetulus griseus OX=10029 GN=CUNH1orf158 PE=4 SV=1 CANONICAL=A0A9J7FBD2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027255628.1. 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mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252316", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252316" } ] }, { "annotation": "May function as a co-chaperone.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3#function" }, { "database": "UniProtKB", "id": "ARBA00002080", "url": "https://www.uniprot.org/uniprotkb/ARBA00002080#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dnajc22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBQ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769451", "url": "https://www.ncbi.nlm.nih.gov/gene/100769451", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007829", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007829", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769451", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769451", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FBQ3", "url": "https://www.orthodb.org/?gene=A0A9J7FBQ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44733", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44733", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44733:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44733:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05154", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05154", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252316", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252316", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKGLLVTYALWALGGPVGLHHLYLGRDSHALLWMLTLGGGGLGWLWEFWKLPGFVAQANRAQAQKQRPEKGIPPLSLLRFAAQTTVGIYFGLVALISLSSMANFYIVGLPLAVGLGVLLVATVGNQTSDFKNTLGAAFLMSPVFYGRPIAILPISLAASITAQKHRRYKASAESETISLRLYRLGLAYLAFTGPLAYSVLCNTAATLSYVAETLGSFLSWFSFFPLLGRLLESVFLLPCRILWLLVGDPGFTSRQFQEWEKLYEFVESFQDEKRQLAYQVLGLPEGATNEEIHRTYRDLVKVWHPDHNRHQREEAQRRFLEIQAAYEFLSQPKKPRAS", "length": 339, "header": "tr|A0A9J7FBQ3-1|A0A9J7FBQ3_CRIGR Isoform 1 of DnaJ homolog subfamily C member 22 OS=Cricetulus griseus OX=10029 GN=Dnajc22 PE=4 SV=1 CANONICAL=A0A9J7FBQ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3/entry", "sequence": { "sequence": "MTKGLLVTYALWALGGPVGLHHLYLGRDSHALLWMLTLGGGGLGWLWEFWKLPGFVAQANRAQAQKQRPEKGIPPLSLLRFAAQTTVGIYFGLVALISLSSMANFYIVGLPLAVGLGVLLVATVGNQTSDFKNTLGAAFLMSPVFYGRPIAILPISLAASITAQKHRRYKASAESETISLRLYRLGLAYLAFTGPLAYSVLCNTAATLSYVAETLGSFLSWFSFFPLLGRLLESVFLLPCRILWLLVGDPGFTSRQFQEWEKLYEFVESFQDEKRQLAYQVLGLPEGATNEEIHRTYRDLVKVWHPDHNRHQREEAQRRFLEIQAAYEFLSQPKKPRAS", "length": 339, "header": "tr|A0A9J7FBQ3-1|A0A9J7FBQ3_CRIGR Isoform 1 of DnaJ homolog subfamily C member 22 OS=Cricetulus griseus OX=10029 GN=Dnajc22 PE=4 SV=1 CANONICAL=A0A9J7FBQ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769451", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769451", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FBQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ3" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 277, "end_pos": 339, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FDQ7-1", "uniprot_ac": "A0A9J7FDQ7", "uniprot_id": "A0A9J7FDQ7_CRIGR", "mass": { "chemical_mass": 161700.0, "monoisotopic_mass": 161700.0 }, "refseq": { "ac": "XP_027256164", "name": "centlein isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256164" }, "gene_names": [ { "name": "LOC100755760", "type": "recommended", "evidence": [ { "id": "A0A9J7FDQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7" } ] }, { "name": "LOC100755760", "type": "synonym", "evidence": [ { "id": "XP_027256164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256164" } ] } ], "protein_names": [ { "name": "Centlein isoform X6", "type": "synonym", "evidence": [ { "id": "A0A9J7FDQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7/entry#names_and_taxonomy" } ] }, { "name": "centlein isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027256164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256164" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027256164.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256164" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755760", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7", "locus": {} } ], "crossref": [ { "id": "100755760", "url": "https://www.ncbi.nlm.nih.gov/gene/100755760", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755760", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755760", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FDQ7", "url": "https://www.orthodb.org/?gene=A0A9J7FDQ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18957:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18957:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027256164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256164", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARSPSSPLLPPPGRPSGRRSPCPGHGAEVHAVRSEASGLTDAAREIFADKSDLVWRAEEGAGGRRGPGRTEASIAPVAGAPSGSWRPEGLSVAEAKATRTQLLEEELSSLKEELALCQADKEFVWSLWKRLQATNPDLTQTVSLVVEREKQKSEAKDRKVLEILQVKDVKIQELEQTESVLNQEINDLVKQKTKVDEENAFLRKEFGDLQKKFKDKSQEVKNTKECLQIKEEQNRLFIKNLEEENEKLRTRCTDLLNDLERLRNQEAHWRKEKYNADAKVKAFEDNLMEAKKEIELSQSKYNDLSLQLDNKQTELLQKDMDITLVRKELQELQNLYKQNSAHTAEQAELIQHLQVLNMDTQKVLKNQEDVHTAESVSYQKLYNELHICFETTKSNEAMFRQRVVNLQDQLFQKEQENIKLKEKLEESQGEPCLSPLESDSNHSGKLSQQPSFSSLETLIVSQKSEIEYLQKKLKVANEKLLDCRSSGQSFSGKSAEGKHKEPPVKRSRSLSPKRTLKASEELRKLKKAERKIENLEKTLQLKSQENDELRNAHDKRKERLQMLHTNYRAVKEQLKQWEEDSGIRTETRKMKRALPQQLRQEDSDAVWNELAYFKRENQDLMVQKMNLQDELDELKVQMSIDKTTIQELNRSMAEKREEQLFRHYEDAGVKKSTPEKNEKAIPEQTLQKVIELENRLKSFEKKSRKLKEWSKKLKKENDLLKFHLKHYQEDSEARERELEHLLKMSKDVENDKGELQIKITELEREVTTLRRQVAEAKALGNDNEEVASQEEKLHHPTDKAKSEIATTDVRARQYDCKTSTTKVKFKAAKKKIFVGRHHTVLNHSIKVMSHIENLSKDGWEDVSEGSSDSEAQSSQNLGTIIVETSQKISPIEDDEDQKGSVQTEDSYAQQREMQKSSREEGKALKDISHYKNTKKMAFQKKSGSMQKSFHTVVPAKVNRDKCKNIPAQKSSSNTILLRERIVSLQQQNSLLHNARKAAESSAKEYKEANEKLLHQQQISDQRFQTSRQTIKKLTVDLAGLRKEKEDLLKKLESSSDITSLVEEVSKVMVPQIQVTTLDTSRSMDLEIKQLQCKLKNATNELTKQSSNVKSLKLELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNSESNESFNEMLESLEKKVKTLTEECSNKKVSVDSLKQRLNVAVKEKSQYEQMYHKTKEELEKKDLKLSLLTSKINETETAMAQIETAASKQLQGLALQSEQVLESAQKKLLAANEKLEEFAFFVKALVKELQSDVHRTRHQIKELKKMQKDKHACKTSTHKVQTLAASILNISPSDLEEILDTENEMEFEKTKIDAENDKEWLLYIQKLLEGQLPFASYLLEAILEKISENKKLTEGYLTVMKDIR", "length": 1401, "header": "tr|A0A9J7FDQ7-1|A0A9J7FDQ7_CRIGR Isoform 1 of Centlein isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100755760 PE=4 SV=1 CANONICAL=A0A9J7FDQ7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ4/entry", "sequence": { "sequence": "MAARSPSSPLLPPPGRPSGRRSPCPGHGAEVHAVRSEASGLTDAAREIFADKSDLVWRAEEGAGGRRGPGRTEASIAPVAGAPSGSWRPEGLSVAEAKATRTQLLEEELSSLKEELALCQADKEFVWSLWKRLQATNPDLTQTVSLVVEREKQKSEAKDRKVLEILQVKDVKIQELEQTESVLNQEINDLVKQKTKVDEENAFLRKEFGDLQKKFKDKSQEVKNTKECLQIKEEQNRLFIKNLEEENEKLRTRCTDLLNDLERLRNQEAHWRKEKYNADAKVKAFEDNLMEAKKEIELSQSKYNDLSLQLDNKQTELLQKDMDITLVRKELQELQNLYKQNSAHTAEQAELIQHLQVLNMDTQKVLKNQEDVHTAESVSYQKLYNELHICFETTKSNEAMFRQRVVNLQDQLFQKEQENIKLKEKLEESQGEPCLSPLESDSNHSGKLSQQPSFSSLETLIVSQKSEIEYLQKKLKVANEKLLDCRSSGQSFSGKSAEGKHKEPPVKRSRSLSPKRTLKASEELRKLKKAERKIENLEKTLQLKSQENDELRNAHDKRKERLQMLHTNYRAVKEQLKQWEEDSGIRTETRKMKRALPQQLRQEDSDAVWNELAYFKRENQDLMVQKMNLQDELDELKVQMSIDKTTIQELNRSMAEKREEQLFRHYEDAGVKKSTPEKNEKAIPEQTLQKVIELENRLKSFEKKSRKLKEWSKKLKKENDLLKFHLKHYQEDSEARERELEHLLKMSKDVENDKGELQIKITELEREVTTLRRQVAEAKALGNDNEEVASQEEKLHHPTDKAKSEIATTDVRARQYDCKTSTTKVKFKAAKKKIFVGRHHTVLNHSIKVMSHIENLSKDGWEDVSEGSDSEAQSSQNLGTIIVETSQKISPIEDDEDQKGSVQTEDSYAQQREMQKSSREEGKALKDISHYKNTKKMAFQKKSGSMQKSFHTVVPAKVNRDKCKNIPAQKSSSNTILLRERIVSLQQQNSLLHNARKAAESSAKEYKEANEKLLHQQQISDQRFQTSRQTIKKLTVDLAGLRKEKEDLLKKLESSSDITSLVEEVSKVMVPQIQVTTLDTSRSMDLEIKQLQCKLKNATNELTKQSSNVKSLKLELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNSESNESFNEMLESLEKKVKTLTEECSNKKVSVDSLKQRLNVAVKEKSQYEQMYHKTKEELEKKDLKLSLLTSKINETETAMAQIETAASKQLQGLALQSEQVLESAQKKLLAANEKLEEFAFFVKALVKELQSDVHRTRHQIKELKKMQKDKHACKTSTHKVQTLAASILNISPSDLEEILDTENEMEFEKTKIDAENDKEWLLYIQKLLEGQLPFASYLLEAILEKISENKKLTEGYLTVMKDIR", "length": 1400, "header": "tr|A0A9J7FBQ4-1|A0A9J7FDQ7_CRIGR Computationally mapped isoform of Centlein isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100755760 PE=4 SV=1 CANONICAL=A0A9J7FDQ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7/entry", "sequence": { "sequence": "MAARSPSSPLLPPPGRPSGRRSPCPGHGAEVHAVRSEASGLTDAAREIFADKSDLVWRAEEGAGGRRGPGRTEASIAPVAGAPSGSWRPEGLSVAEAKATRTQLLEEELSSLKEELALCQADKEFVWSLWKRLQATNPDLTQTVSLVVEREKQKSEAKDRKVLEILQVKDVKIQELEQTESVLNQEINDLVKQKTKVDEENAFLRKEFGDLQKKFKDKSQEVKNTKECLQIKEEQNRLFIKNLEEENEKLRTRCTDLLNDLERLRNQEAHWRKEKYNADAKVKAFEDNLMEAKKEIELSQSKYNDLSLQLDNKQTELLQKDMDITLVRKELQELQNLYKQNSAHTAEQAELIQHLQVLNMDTQKVLKNQEDVHTAESVSYQKLYNELHICFETTKSNEAMFRQRVVNLQDQLFQKEQENIKLKEKLEESQGEPCLSPLESDSNHSGKLSQQPSFSSLETLIVSQKSEIEYLQKKLKVANEKLLDCRSSGQSFSGKSAEGKHKEPPVKRSRSLSPKRTLKASEELRKLKKAERKIENLEKTLQLKSQENDELRNAHDKRKERLQMLHTNYRAVKEQLKQWEEDSGIRTETRKMKRALPQQLRQEDSDAVWNELAYFKRENQDLMVQKMNLQDELDELKVQMSIDKTTIQELNRSMAEKREEQLFRHYEDAGVKKSTPEKNEKAIPEQTLQKVIELENRLKSFEKKSRKLKEWSKKLKKENDLLKFHLKHYQEDSEARERELEHLLKMSKDVENDKGELQIKITELEREVTTLRRQVAEAKALGNDNEEVASQEEKLHHPTDKAKSEIATTDVRARQYDCKTSTTKVKFKAAKKKIFVGRHHTVLNHSIKVMSHIENLSKDGWEDVSEGSSDSEAQSSQNLGTIIVETSQKISPIEDDEDQKGSVQTEDSYAQQREMQKSSREEGKALKDISHYKNTKKMAFQKKSGSMQKSFHTVVPAKVNRDKCKNIPAQKSSSNTILLRERIVSLQQQNSLLHNARKAAESSAKEYKEANEKLLHQQQISDQRFQTSRQTIKKLTVDLAGLRKEKEDLLKKLESSSDITSLVEEVSKVMVPQIQVTTLDTSRSMDLEIKQLQCKLKNATNELTKQSSNVKSLKLELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNSESNESFNEMLESLEKKVKTLTEECSNKKVSVDSLKQRLNVAVKEKSQYEQMYHKTKEELEKKDLKLSLLTSKINETETAMAQIETAASKQLQGLALQSEQVLESAQKKLLAANEKLEEFAFFVKALVKELQSDVHRTRHQIKELKKMQKDKHACKTSTHKVQTLAASILNISPSDLEEILDTENEMEFEKTKIDAENDKEWLLYIQKLLEGQLPFASYLLEAILEKISENKKLTEGYLTVMKDIR", "length": 1401, "header": "tr|A0A9J7FDQ7-1|A0A9J7FDQ7_CRIGR Isoform 1 of Centlein isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100755760 PE=4 SV=1 CANONICAL=A0A9J7FDQ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT2/entry", "sequence": { "sequence": "MAARSPSSPLLPPPGRPSGRRSPCPGHGAEVHAVRSEASGLTDAAREIFADKSDLVWRAEEGAGGRRGPGRTEASIAPVAGAPSGSWRPEGLSVAEAKATRTQLLEEELSSLKEELALCQADKEFVWSLWKRLQATNPDLTQTVSLVVEREKQKSEAKDRKVLEILQVKDVKIQELEQTESVLNQEINDLVKQKTKVDEENAFLRKEFGDLQKKFKDKSQEVKNTKECLQIKEEQNRLFIKNLEEENEKLRTRCTDLLNDLERLRNQEAHWRKEKYNADAKVKAFEDNLMEAKKEIELSQSKYNDLSLQLDNKQTELLQKDMDITLVRKELQELQNLYKQNSAHTAEQAELIQHLQVLNMDTQKVLKNQEDVHTAESVSYQKLYNELHICFETTKSNEAMFRQRVVNLQDQLFQKEQENIKLKEKLEESQGEPCLSPLESDSNHSGKLSQQPSFSSLETLIVSQKSEIEYLQKKLKVANEKLLDCRSSGQSFSGKSAEGKHKEPPVKRSRSLSPKRTLKASEELRKLKKAERKIENLEKTLQLKSQENDELRNAHDKRKERLQMLHTNYRAVKEQLKQWEEDSGMTETRKMKRALPQQLRQEDSDAVWNELAYFKRENQDLMVQKMNLQDELDELKVQMSIDKTTIQELNRSMAEKREEQLFRHYEDAGVKKSTPEKNEKAIPEQTLQKVIELENRLKSFEKKSRKLKEWSKKLKKENDLLKFHLKHYQEDSEARERELEHLLKMSKDVENDKGELQIKITELEREVTTLRRQVAEAKALGNDNEEVASQEEKLHHPTDKAKSEIATTDVRARQYDCKTSTTKVKFKAAKKKIFVGRHHTVLNHSIKVMSHIENLSKDGWEDVSEGSSDSEAQSSQNLGTIIVETSQKISPIEDDEDQKGSVQTEDSYAQQREMQKSSREEGKALKDISHYKNTKKMAFQKKSGSMQKSFHTVVPAKVNRDKCKNIPAQKSSSNTILLRERIVSLQQQNSLLHNARKAAESSAKEYKEANEKLLHQQQISDQRFQTSRQTIKKLTVDLAGLRKEKEDLLKKLESSSDITSLVEEVSKVMVPQIQVTTLDTSRSMDLEIKQLQCKLKNATNELTKQSSNVKSLKLELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNSESNESFNEMLESLEKKVKTLTEECSNKKVSVDSLKQRLNVAVKEKSQYEQMYHKTKEELEKKDLKLSLLTSKINETETAMAQIETAASKQLQGLALQSEQVLESAQKKLLAANEKLEEFAFFVKALVKELQSDVHRTRHQIKELKKMQKDKHACKTSTHKVQTLAASILNISPSDLEEILDTENEMEFEKTKIDAENDKEWLLYIQKLLEGQLPFASYLLEAILEKISENKKLTEGYLTVMKDIR", "length": 1400, "header": "tr|A0A9J7FGT2-1|A0A9J7FGT2_CRIGR Computationally mapped isoform of Centlein isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC100755760 PE=4 SV=1 CANONICAL=A0A9J7FDQ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL7/entry", "sequence": { "sequence": "MAARSPSSPLLPPPGRPSGRRSPCPGHGAEVHAVRSEASGLTDAAREIFADKSDLVWRAEEGAGGRRGPGRTEASIAPVAGAPSGSWRPEGLSVAEAKATRTQLLEEELSSLKEELALCQADKEFVWSLWKRLQATNPDLTQTVSLVVEREKQKSEAKDRKVLEILQVKDVKIQELEQTESVLNQEINDLVKQKTKVDEENAFLRKEFGDLQKKFKDKSQEVKNTKECLQIKEEQNRLFIKNLEEENEKLRTRCTDLLNDLERLRNQEAHWRKEKYNADAKVKAFEDNLMEAKKEIELSQSKYNDLSLQLDNKQTELLQKDMDITLVRKELQELQNLYKQNSAHTAEQAELIQHLQVLNMDTQKVLKNQEDVHTAESVSYQKLYNELHICFETTKSNEAMFRQRVVNLQDQLFQKEQENIKLKEKLEESQGEPCLSPLESDSNHSGKLSQQPSFSSLETLIVSQKSEIEYLQKKLKVANEKLLDCRSSGQSFSGKSAEGKHKEPPVKRSRSLSPKRTLKASEELRKLKKAERKIENLEKTLQLKSQENDELRNAHDKRKERLQMLHTNYRAVKEQLKQWEEDSGMTETRKMKRALPQQLRQEDSDAVWNELAYFKRENQDLMVQKMNLQDELDELKVQMSIDKTTIQELNRSMAEKREEQLFRHYEDAGVKKSTPEKNEKAIPEQTLQKVIELENRLKSFEKKSRKLKEWSKKLKKENDLLKFHLKHYQEDSEARERELEHLLKMSKDVENDKGELQIKITELEREVTTLRRQVAEAKALGNDNEEVASQEEKLHHPTDKAKSEIATTDVRARQYDCKTSTTKVKFKAAKKKIFVGRHHTVLNHSIKVMSHIENLSKDGWEDVSEGSDSEAQSSQNLGTIIVETSQKISPIEDDEDQKGSVQTEDSYAQQREMQKSSREEGKALKDISHYKNTKKMAFQKKSGSMQKSFHTVVPAKVNRDKCKNIPAQKSSSNTILLRERIVSLQQQNSLLHNARKAAESSAKEYKEANEKLLHQQQISDQRFQTSRQTIKKLTVDLAGLRKEKEDLLKKLESSSDITSLVEEVSKVMVPQIQVTTLDTSRSMDLEIKQLQCKLKNATNELTKQSSNVKSLKLELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNSESNESFNEMLESLEKKVKTLTEECSNKKVSVDSLKQRLNVAVKEKSQYEQMYHKTKEELEKKDLKLSLLTSKINETETAMAQIETAASKQLQGLALQSEQVLESAQKKLLAANEKLEEFAFFVKALVKELQSDVHRTRHQIKELKKMQKDKHACKTSTHKVQTLAASILNISPSDLEEILDTENEMEFEKTKIDAENDKEWLLYIQKLLEGQLPFASYLLEAILEKISENKKLTEGYLTVMKDIR", "length": 1399, "header": "tr|A0A9J7JCL7-1|A0A9J7JCL7_CRIGR Computationally mapped isoform of Centlein isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC100755760 PE=4 SV=1 CANONICAL=A0A9J7FDQ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755760", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755760", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "centriole-centriole cohesion", "id": "GO:0010457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010457", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1098, "end_pos": 1100, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1159, "end_pos": 1161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1230, "end_pos": 1232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1326, "end_pos": 1328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" }, { "start_pos": 651, "end_pos": 653, "annotation": "n_glycosylation_sequon" }, { "start_pos": 844, "end_pos": 846, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1098, "end_pos": 1100 }, { "start_pos": 1159, "end_pos": 1161 }, { "start_pos": 1230, "end_pos": 1232 }, { "start_pos": 1326, "end_pos": 1328 }, { "start_pos": 443, "end_pos": 445 }, { "start_pos": 651, "end_pos": 653 }, { "start_pos": 844, "end_pos": 846 }, { "start_pos": 855, "end_pos": 857 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FFS4-1", "uniprot_ac": "A0A9J7FFS4", "uniprot_id": "A0A9J7FFS4_CRIGR", "mass": { "chemical_mass": 217112.0, "monoisotopic_mass": 217112.0 }, "refseq": { "ac": "XP_027256182", "name": "DENN domain-containing protein 4C isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256182" }, "gene_names": [ { "name": "Dennd4c", "type": "recommended", "evidence": [ { "id": "A0A9J7FFS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4" } ] }, { "name": "Dennd4c", "type": "synonym", "evidence": [ { "id": "XP_027256182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256182" } ] } ], "protein_names": [ { "name": "DENN domain-containing protein 4C isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027256182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256182" }, { "id": "A0A9J7FFS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256182", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256182" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dennd4c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4", "locus": {} } ], "crossref": [ { "id": "100754289", "url": "https://www.ncbi.nlm.nih.gov/gene/100754289", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754289", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754289", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FFS4", "url": "https://www.orthodb.org/?gene=A0A9J7FFS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03455", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03455", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256182", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256182", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGL1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIEDKGPRVTDYFVVAGLTDTSTLLDQEINRIDNKSTGPKAPITDIAVIIKSAGEAVPEGYTCVEATPSALQANLNYGSLKSPELFLCYKRGRDKPPLTDIGVLYEGKERLIPGCEVIQATPYGRCANVNNSSTTSQRIFITYRRAPPARSQNSLAVTDICVIITSKGETPPHTFCKVDKNLNCGMWGSNVFLCYKKSVPASNAIAYKAGLIFRYPEEDYESFPLSESVPLFCLPMGATIECWDPQTKYPLPVFSTFVLTGSSAVKVYGAAIQFYEPYPRERLTEKQLMQLGLLTPVERKVVSKPINSNKCICLLSHWPFFDAFKKFLMFIYKVSVSGPHPLPIEKHISHFMQNIPFPSPQRPRILVQLSVHDALILSQPVSTPLPLSGANFSTLLMNLGPENCATLLLLVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLSAPFPFIVGVDSRYFDLHDPPQDVVCIDLDTNMIYVSDEKKNVNWKQLPKKPCKSLLGSLRRLYPQLYSVHRKTQESSAIEMTPIEADFSWQKKMTQLEMEIQETFLRFMASILKGYRSYLKPITEAPSNKATAVDSLFDRQGFVKSRDRAYMKFYALLAKTQMFSRFIEECSFVSDKDTGLAFFDDCIEKLFPDKGVEKTDKVDLDSAEDTKLIELDDSQKSEHTVFIMPPEPPPDDGNNLSPQYSYTCFPVLDLKLFDSPQELKLCFSRHPPGSSITNSPALMAKRTKQEIKTAHKLAKRCYMNPPQWAKCLFSHCYSLWFICLPAYVRVSHPKVRALQQAYDVLIKMRKTDVDPLDEVCYRVVMQLCGLWVHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVHGLAQFRQPLKKTGQKPQVFSISAPQNAAGGSDGDTVSHGSVDSSNDANSGEHTVFVKDLISLDSIDNHSSTAGGQSDQGYGSKDELVKEDAEVPAPEECESQELTATELHIEEVCDVSAIVSKSSQPSPEPQSPTEPPAWGSSIVKVPSGLFDTNNRTSSTGSTSNMLFSTQALVEDSVFGEVTNFKKNGDRGEKRQKHFPERSCSFSSESRAGMLLKKSSLDLNSSEMATMMGADAKILTAALTCPKTSPLRVSRTHSFENVTCHPADSRTRMSDGTWDCEHRSSPVLEMLEESQELLETVVDNNVAETSAKVTCDSLQNDSDNNQSRDRKAGSQDPVNKRNSSYAVGKAIEREDVEIGLDPLSLLATECVEKTSDSEDKFSPDKFSPVISRNLADEIESYMNLKSPLGSKSSSMELHGEGNQESGSATTFAHPLERRSSLPLEHGPPAQDSPDIEKSSPTVSRSKTLTGRFKPQTPYRTYKDRSTSLSALVRSSPNSSLGSVVNSLSGLKLDNILSGPKIDVLKSSMKQAATVASKMWVAVASAYSYSDDEEETNKDYSFPAGLEDHILGDNVSSNASISGLVPSELTQSNTSLGSSNSSGDVGKLQCPTGEVPFSRNIKGQDFEKLDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTTCPFCKSNFLPLLNVEFKDLRGSASFFLKPSTSGDSLQSGSIPSANEPSEHKPVSSSAEPDLISFMDFSKHSQTIIEEASYAVKSSDEIKKTSVDVQSVKISSVPNNLSKRNASLTRSHSVGGPLQNIDFSQRPFHGISTVSLPNSLQEDVDHLGKRPNPPPVSVPYLSPLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPGEPLYVSWRNLNSEKKLSFLSEEQQAANALVETIRQSIQQNDVLKPINLLSQQLKPNVKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGLAYRSLSSEILEKLQKIDAPPSVSMEWCRKCFGAPLI", "length": 1960, "header": "tr|A0A9J7FFS4-1|A0A9J7FFS4_CRIGR Isoform 1 of DENN domain-containing protein 4C isoform X3 OS=Cricetulus griseus OX=10029 GN=Dennd4c PE=4 SV=1 CANONICAL=A0A9J7FFS4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR1/entry", "sequence": { "sequence": "MIEDKGPRVTDYFVVAGLTDTSTLLDQEINRIDNKSTGPKAPITDIAVIIKSAGEAVPEGYTCVEATPSALQANLNYGSLKSPELFLCYKRGRDKPPLTDIGVLYEGKERLIPGCEVIQATPYGRCANVNNSSTTSQRIFITYRRAPPARSQNSLAVTDICVIITSKGETPPHTFCKVDKNLNCGMWGSNVFLCYKKSVPASNAIAYKAGLIFRYPEEDYESFPLSESVPLFCLPMGATIECWDPQTKYPLPVFSTFVLTGSSAVKVYGAAIQFYEPYPRERLTEKQLMQLGLLTPVERKVVSKPINSNKCICLLSHWPFFDAFKKFLMFIYKVSVSGPHPLPIEKHISHFMQNIPFPSPQRPRILVQLSVHDALILSQPVSTPLPLSGANFSTLLMNLGPENCATLLLLVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLSAPFPFIVGVDSRYFDLHDPPQDVVCIDLDTNMIYVSDEKKNVNWKQLPKKPCKSLLGSLRRLYPQLYSVHRKTQESSAIEMTPIEADFSWQKKMTQLEMEIQETFLRFMASILKGYRSYLKPITEAPSNKATAVDSLFDRQGFVKSRDRAYMKFYALLAKTQMFSRFIEECSFVSDKDTGLAFFDDCIEKLFPDKGVEKTDKVDLDSAEDTKLIELDDSQKSEHTVFIMPPEPPPDDGNNLSPQYSYTCFPVLDLKLFDSPQELKLCFSRHPPGSSITNSPALMAKRTKQEIKTAHKLAKRCYMNPPQWAKCLFSHCYSLWFICLPAYVRVSHPKVRALQQAYDVLIKMRKTDVDPLDEVCYRVVMQLCGLWVHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVHGLAQFRQPLKKTGQKPQVFSISAPQNAAGGSDGDTVSHGSVDSSNDANSGEHTVFVKDLISLDSIDNHSSTGGQSDQGYGSKDELVKEDAEVPAPEECESQELTATELHIEEVCDVSAIVSKSSQPSPEPQSPTEPPAWGSSIVKVPSGLFDTNNRTSSTGSTSNMLFSTQALVEDSVFGEVTNFKKNGDRGEKRQKHFPERSCSFSSESRAGMLLKKSSLDLNSSEMATMMGADAKILTAALTCPKTSPLRVSRTHSFENVTCHPADSRTRMSDGTWDCEHRSSPVLEMLEESQELLETVVDNNVAETSAKVTCDSLQNDSDNNQSRDRKAGSQDPVNKRNSSYAVGKAIEREDVEIGLDPLSLLATECVEKTSDSEDKFSPDKFSPVISRNLADEIESYMNLKSPLGSKSSSMELHGEGNQESGSATTFAHPLERRSSLPLEHGPPAQDSPDIEKSSPTVSRSKTLTGRFKPQTPYRTYKDRSTSLSALVRSSPNSSLGSVVNSLSGLKLDNILSGPKIDVLKSSMKQAATVASKMWVAVASAYSYSDDEEETNKDYSFPAGLEDHILGDNVSSNASISGLVPSELTQSNTSLGSSNSSGDVGKLQCPTGEVPFSRNIKGQDFEKLDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTTCPFCKSNFLPLLNVEFKDLRGSASFFLKPSTSGDSLQSGSIPSANEPSEHKPVSSSAEPDLISFMDFSKHSQTIIEEASYAVKSSDEIKKTSVDVQSVKISSVPNNLSKRNASLTRSHSVGGPLQNIDFSQRPFHGISTVSLPNSLQEDVDHLGKRPNPPPVSVPYLSPLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPGEPLYVSWRNLNSEKKLSFLSEEQQAANALVETIRQSIQQNDVLKPINLLSQQLKPNVKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGLAYRSLSSEILEKLQKIDAPPSVSMEWCRKCFGAPLI", "length": 1959, "header": "tr|A0A9J7FBR1-1|A0A9J7FFS4_CRIGR Computationally mapped isoform of DENN domain-containing protein 4C isoform X3 OS=Cricetulus griseus OX=10029 GN=Dennd4c PE=4 SV=1 CANONICAL=A0A9J7FFS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4/entry", "sequence": { "sequence": "MIEDKGPRVTDYFVVAGLTDTSTLLDQEINRIDNKSTGPKAPITDIAVIIKSAGEAVPEGYTCVEATPSALQANLNYGSLKSPELFLCYKRGRDKPPLTDIGVLYEGKERLIPGCEVIQATPYGRCANVNNSSTTSQRIFITYRRAPPARSQNSLAVTDICVIITSKGETPPHTFCKVDKNLNCGMWGSNVFLCYKKSVPASNAIAYKAGLIFRYPEEDYESFPLSESVPLFCLPMGATIECWDPQTKYPLPVFSTFVLTGSSAVKVYGAAIQFYEPYPRERLTEKQLMQLGLLTPVERKVVSKPINSNKCICLLSHWPFFDAFKKFLMFIYKVSVSGPHPLPIEKHISHFMQNIPFPSPQRPRILVQLSVHDALILSQPVSTPLPLSGANFSTLLMNLGPENCATLLLLVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLSAPFPFIVGVDSRYFDLHDPPQDVVCIDLDTNMIYVSDEKKNVNWKQLPKKPCKSLLGSLRRLYPQLYSVHRKTQESSAIEMTPIEADFSWQKKMTQLEMEIQETFLRFMASILKGYRSYLKPITEAPSNKATAVDSLFDRQGFVKSRDRAYMKFYALLAKTQMFSRFIEECSFVSDKDTGLAFFDDCIEKLFPDKGVEKTDKVDLDSAEDTKLIELDDSQKSEHTVFIMPPEPPPDDGNNLSPQYSYTCFPVLDLKLFDSPQELKLCFSRHPPGSSITNSPALMAKRTKQEIKTAHKLAKRCYMNPPQWAKCLFSHCYSLWFICLPAYVRVSHPKVRALQQAYDVLIKMRKTDVDPLDEVCYRVVMQLCGLWVHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVHGLAQFRQPLKKTGQKPQVFSISAPQNAAGGSDGDTVSHGSVDSSNDANSGEHTVFVKDLISLDSIDNHSSTAGGQSDQGYGSKDELVKEDAEVPAPEECESQELTATELHIEEVCDVSAIVSKSSQPSPEPQSPTEPPAWGSSIVKVPSGLFDTNNRTSSTGSTSNMLFSTQALVEDSVFGEVTNFKKNGDRGEKRQKHFPERSCSFSSESRAGMLLKKSSLDLNSSEMATMMGADAKILTAALTCPKTSPLRVSRTHSFENVTCHPADSRTRMSDGTWDCEHRSSPVLEMLEESQELLETVVDNNVAETSAKVTCDSLQNDSDNNQSRDRKAGSQDPVNKRNSSYAVGKAIEREDVEIGLDPLSLLATECVEKTSDSEDKFSPDKFSPVISRNLADEIESYMNLKSPLGSKSSSMELHGEGNQESGSATTFAHPLERRSSLPLEHGPPAQDSPDIEKSSPTVSRSKTLTGRFKPQTPYRTYKDRSTSLSALVRSSPNSSLGSVVNSLSGLKLDNILSGPKIDVLKSSMKQAATVASKMWVAVASAYSYSDDEEETNKDYSFPAGLEDHILGDNVSSNASISGLVPSELTQSNTSLGSSNSSGDVGKLQCPTGEVPFSRNIKGQDFEKLDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTTCPFCKSNFLPLLNVEFKDLRGSASFFLKPSTSGDSLQSGSIPSANEPSEHKPVSSSAEPDLISFMDFSKHSQTIIEEASYAVKSSDEIKKTSVDVQSVKISSVPNNLSKRNASLTRSHSVGGPLQNIDFSQRPFHGISTVSLPNSLQEDVDHLGKRPNPPPVSVPYLSPLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPGEPLYVSWRNLNSEKKLSFLSEEQQAANALVETIRQSIQQNDVLKPINLLSQQLKPNVKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGLAYRSLSSEILEKLQKIDAPPSVSMEWCRKCFGAPLI", "length": 1960, "header": "tr|A0A9J7FFS4-1|A0A9J7FFS4_CRIGR Isoform 1 of DENN domain-containing protein 4C isoform X3 OS=Cricetulus griseus OX=10029 GN=Dennd4c PE=4 SV=1 CANONICAL=A0A9J7FFS4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGL1/entry", "sequence": { "sequence": "MIEDKGPRVTDYFVVAGLTDTSTLLDQEINRIDNKSTGPKAPITDIAVIIKSAGEAVPEGYTCVEATPSALQANLNYGSLKSPELFLCYKRGRDKPPLTDIGVLYEGKERLIPGCEVIQATPYGRCANVNNSSTTSQRIFITYRRAPPARSQNSLAVTDICVIITSKGETPPHTFCKVDKNLNCGMWGSNVFLCYKKSVPASNAIAYKAGLIFRYPEEDYESFPLSESVPLFCLPMGATIECWDPQTKYPLPVFSTFVLTGSSAVKVYGAAIQFYEPYPRERLTEKQLMQLGLLTPVERKVVSKPINSNKCICLLSHWPFFDAFKKFLMFIYKVSVSGPHPLPIEKHISHFMQNIPFPSPQRPRILVQLSVHDALILSQPVSTPLPLSGANFSTLLMNLGPENCATLLLLVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLSAPFPFIVGVDSRYFDLHDPPQDVVCIDLDTNMIYVSDEKKNVNWKQLPKKPCKSLLGSLRRLYPQLYSVHRKTQESSAIEMTPIEADFSWQKKMTQLEMEIQETFLRFMASILKGYRSYLKPITEAPSNKATAVDSLFDRQGFVKSRDRAYMKFYALLAKTQMFSRFIEECSFVSDKDTGLAFFDDCIEKLFPDKGVEKTDKVDLDSAEDTKLIELDDSQKSEHTVFIMPPEPPPDDGNNLSPQYSYTCFPVLDLKLFDSPQELKLCFSRHPPGSSITNSPALMAKRTKQEIKTAHKLAKRCYMNPPQWAKCLFSHCYSLWFICLPAYVRVSHPKVRALQQAYDVLIKMRKTDVDPLDEVCYRVVMQLCGLWVHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVHGLAQFRQPLKKTGQKPQVFSISGGQSDQGYGSKDELVKEDAEVPAPEECESQELTATELHIEEVCDVSAIVSKSSQPSPEPQSPTEPPAWGSSIVKVPSGLFDTNNRTSSTGSTSNMLFSTQALVEDSVFGEVTNFKKNGDRGEKRQKHFPERSCSFSSESRAGMLLKKSSLDLNSSEMATMMGADAKILTAALTCPKTSPLRVSRTHSFENVTCHPADSRTRMSDGTWDCEHRSSPVLEMLEESQELLETVVDNNVAETSAKVTCDSLQNDSDNNQSRDRKAGSQDPVNKRNSSYAVGKAIEREDVEIGLDPLSLLATECVEKTSDSEDKFSPDKFSPVISRNLADEIESYMNLKSPLGSKSSSMELHGEGNQESGSATTFAHPLERRSSLPLEHGPPAQDSPDIEKSSPTVSRSKTLTGRFKPQTPYRTYKDRSTSLSALVRSSPNSSLGSVVNSLSGLKLDNILSGPKIDVLKSSMKQAATVASKMWVAVASAYSYSDDEEETNKDYSFPAGLEDHILGDNVSSNASISGLVPSELTQSNTSLGSSNSSGDVGKLQCPTGEVPFSRNIKGQDFEKLDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTTCPFCKSNFLPLLNVEFKDLRGSASFFLKPSTSGDSLQSGSIPSANEPSEHKPVSSSAEPDLISFMDFSKHSQTIIEEASYAVKSSDEIKKTSVDVQSVKISSVPNNLSKRNASLTRSHSVGGPLQNIDFSQRPFHGISTVSLPNSLQEDVDHLGKRPNPPPVSVPYLSPLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPGEPLYVSWRNLNSEKKLSFLSEEQQAANALVETIRQSIQQNDVLKPINLLSQQLKPNVKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGLAYRSLSSEILEKLQKIDAPPSVSMEWCRKCFGAPLI", "length": 1910, "header": "tr|A0A9J7FGL1-1|A0A9J7FGL1_CRIGR Computationally mapped isoform of DENN domain-containing protein 4C isoform X5 OS=Cricetulus griseus OX=10029 GN=Dennd4c PE=4 SV=1 CANONICAL=A0A9J7FFS4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 67, "start_aa": "Thr", "end_pos": 67, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr67", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754289", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754289", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of Rab protein signal transduction", "id": "GO:0032483", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032483", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1044, "end_pos": 1046, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1113, "end_pos": 1115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1150, "end_pos": 1152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1209, "end_pos": 1211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1214, "end_pos": 1216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1231, "end_pos": 1233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1386, "end_pos": 1388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1462, "end_pos": 1464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1466, "end_pos": 1468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1481, "end_pos": 1483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1488, "end_pos": 1490, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1524, "end_pos": 1526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1570, "end_pos": 1572, "annotation": "n_glycosylation_sequon" 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256205", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256205" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGM1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Elavl2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGM1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FGM1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FGM1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12654", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12654", "database": "CDD", "categories": [ "Protein Classification" ] 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 389, "header": "tr|A0A9J7FGM1-1|A0A9J7FGM1_CRIGR Isoform 1 of ELAV-like protein OS=Cricetulus griseus 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isoform of ELAV-like protein 2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Elavl2 PE=4 SV=1 CANONICAL=A0A9J7FGM1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFK9/entry", "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 375, "header": "tr|A0A9J7FFK9-1|A0A9J7FFK9_CRIGR Computationally mapped isoform of ELAV-like protein OS=Cricetulus griseus OX=10029 GN=Elavl2 PE=3 SV=1 CANONICAL=A0A9J7FGM1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFU1/entry", "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 376, "header": "tr|A0A9J7FFU1-1|A0A9J7FFU1_CRIGR Computationally mapped isoform of ELAV-like protein OS=Cricetulus griseus OX=10029 GN=Elavl2 PE=3 SV=1 CANONICAL=A0A9J7FGM1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGM1/entry", "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 389, "header": "tr|A0A9J7FGM1-1|A0A9J7FGM1_CRIGR Isoform 1 of ELAV-like protein OS=Cricetulus griseus OX=10029 GN=Elavl2 PE=3 SV=1 CANONICAL=A0A9J7FGM1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCM7/entry", "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTVGFHQ", "length": 196, "header": "tr|A0A9J7JCM7-1|A0A9J7JCM7_CRIGR Computationally mapped isoform of ELAV-like protein 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Elavl2 PE=4 SV=1 CANONICAL=A0A9J7FGM1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JG54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG54/entry", "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 388, "header": "tr|A0A9J7JG54-1|A0A9J7JG54_CRIGR Computationally mapped isoform of ELAV-like protein OS=Cricetulus griseus OX=10029 GN=Elavl2 PE=3 SV=1 CANONICAL=A0A9J7FGM1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUK4/entry", "sequence": { "sequence": "METQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 360, "header": "tr|A0A9J7JUK4-1|A0A9J7JUK4_CRIGR Computationally mapped isoform of ELAV-like protein OS=Cricetulus griseus OX=10029 GN=Elavl2 PE=3 SV=1 CANONICAL=A0A9J7FGM1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBS4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBS4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771799", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771799", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGM1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FGM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGM1" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 146, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 384, "end_pos": 386 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 53, "end_pos": 55 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FDJ3-1", "uniprot_ac": "A0A9J7FDJ3", "uniprot_id": "A0A9J7FDJ3_CRIGR", "mass": { "chemical_mass": 85561.0, "monoisotopic_mass": 85561.0 }, "refseq": { "ac": "XP_027254673", "name": "myb-related protein A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254673" }, "gene_names": [ { "name": "Mybl1", "type": "recommended", "evidence": [ { "id": "A0A9J7FDJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" } ] }, { "name": "Mybl1", "type": "synonym", "evidence": [ { "id": "XP_027254673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254673" } ] } ], "protein_names": [ { "name": "Myb-related protein A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FDJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3/entry#names_and_taxonomy" } ] }, { "name": "myb-related protein A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027254673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254673" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254673" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mybl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FDJ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FDJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763528", "url": "https://www.ncbi.nlm.nih.gov/gene/100763528", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763528", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763528", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FDJ3", "url": "https://www.orthodb.org/?gene=A0A9J7FDJ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45614:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45614:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00249", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00249", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07988", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07988", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09316", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09316", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13921", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13921", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254673", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEGYLQDGIKSERSSSKLQHKPCAAMDHLQTQNQFYIPVQIPGYQYVSPDGNCVEHVQTSAFIQQPFVDEDPDKEKKIKELELLLMSAENEVRRKRLPSQPGSFSSWSGSFLMDDSMSNTLNNLEEHTTEFYSMDENQTVSAQQNSPTKFLAVEANAVLSSLQTIPEFAETLELIESDPVAWSDVTSFDLSDAAASPVKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKNSCNGGDSEAIPLTSPNVVKFSTPPTILRKKKRIRVGQSLGNELGDGSFNEGSNTALKHTPVKTLPFSPSQFFNTCPGNEQLNIENPSFTSTPICGQKVLITTPLQKEATPKDQKENVGFRTPTIRRSILGTTPRTPTPFKNALAAQEKKYGPLKIVSQPLAFLEEDIREVLKEETGTDIFLKEEDEPAYKSCKQEHSASVKKVRKSLALDSWDKEEPGTQLLTEDISDMQSENILTTSLLMIPLLEIHDNRCNLTPEKQDINSANKTYTLTKKKTNPNTSKVVKLEKNLQSNCEWETVVYGKTEDQLIMTEQARRYLSTYTAASSTSRALIL", "length": 751, "header": "tr|A0A9J7FDJ3-1|A0A9J7FDJ3_CRIGR Isoform 1 of Myb-related protein A isoform X2 OS=Cricetulus griseus OX=10029 GN=Mybl1 PE=4 SV=1 CANONICAL=A0A9J7FDJ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBS9/entry", "sequence": { "sequence": "MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEGYLQDGIKSERSSSKLQHKPCAAMDHLQTQNQFYIPVQIPGYQYVSPDGNCVEHVQTSAFIQQPFVDEDPDKEKKIKELELLLMSAENEVRRKRLPSQPGSFSSWSGSFLMDDSMSNTLNNLEEHTTEFYSMDENQTVSAQQNSPTKFLAVEANAVLSSLQTIPEFAETLELIESDPVAWSDVTSFDLSDAAASPVKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKNSCNGGDSEAIPLTSPNVVKFSTPPTILRKKKRIRVGQSLGNELGDGSFNEGSNTALKHTPVKTLPFSPSQFFNTCPGNEQLNIENPSFTSTPICGQKVLITTPLQKEATPKDQKENVGFRTPTIRRSILGTTPRTPTPFKNALAAQEKKYGPLKIVSQPLAFLEEDIREVLKEETGTDIFLKEEDEPAYKSCKQEHSASVKKVRKSLALDSWDKEEPGTQLLTEDISDMQSNCEWETVVYGKTEDQLIMTEQARRYLSTYTAASSTSRALIL", "length": 691, "header": "tr|A0A9J7FBS9-1|A0A9J7FDJ3_CRIGR Computationally mapped isoform of Myb-related protein A isoform X2 OS=Cricetulus griseus OX=10029 GN=Mybl1 PE=4 SV=1 CANONICAL=A0A9J7FDJ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3/entry", "sequence": { "sequence": "MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASHLQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEGYLQDGIKSERSSSKLQHKPCAAMDHLQTQNQFYIPVQIPGYQYVSPDGNCVEHVQTSAFIQQPFVDEDPDKEKKIKELELLLMSAENEVRRKRLPSQPGSFSSWSGSFLMDDSMSNTLNNLEEHTTEFYSMDENQTVSAQQNSPTKFLAVEANAVLSSLQTIPEFAETLELIESDPVAWSDVTSFDLSDAAASPVKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKNSCNGGDSEAIPLTSPNVVKFSTPPTILRKKKRIRVGQSLGNELGDGSFNEGSNTALKHTPVKTLPFSPSQFFNTCPGNEQLNIENPSFTSTPICGQKVLITTPLQKEATPKDQKENVGFRTPTIRRSILGTTPRTPTPFKNALAAQEKKYGPLKIVSQPLAFLEEDIREVLKEETGTDIFLKEEDEPAYKSCKQEHSASVKKVRKSLALDSWDKEEPGTQLLTEDISDMQSENILTTSLLMIPLLEIHDNRCNLTPEKQDINSANKTYTLTKKKTNPNTSKVVKLEKNLQSNCEWETVVYGKTEDQLIMTEQARRYLSTYTAASSTSRALIL", "length": 751, "header": "tr|A0A9J7FDJ3-1|A0A9J7FDJ3_CRIGR Isoform 1 of Myb-related protein A isoform X2 OS=Cricetulus griseus OX=10029 GN=Mybl1 PE=4 SV=1 CANONICAL=A0A9J7FDJ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBS9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBS9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763528", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763528", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 672, "end_pos": 674, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" }, { "start_pos": 684, "end_pos": 686, "annotation": "n_glycosylation_sequon" }, { "start_pos": 697, "end_pos": 699, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FDJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" }, { "id": "PS51294", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51294" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH myb-type", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 81, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FDJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ3" }, { "id": "PS50090", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50090" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb-like", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 81, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 181, "end_pos": 183 }, { "start_pos": 326, "end_pos": 328 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 672, "end_pos": 674 }, { "start_pos": 67, "end_pos": 69 }, { "start_pos": 684, "end_pos": 686 }, { "start_pos": 697, "end_pos": 699 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FBV6-1", "uniprot_ac": "A0A9J7FBV6", "uniprot_id": "A0A9J7FBV6_CRIGR", "mass": { "chemical_mass": 87763.0, "monoisotopic_mass": 87763.0 }, "refseq": { "ac": "XP_027252447", "name": "keratin, type II cytoskeletal 78", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252447" }, "gene_names": [ { "name": "LOC100774159", "type": "recommended", "evidence": [ { "id": "A0A9J7FBV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBV6" } ] }, { "name": "LOC100774159", "type": "synonym", "evidence": [ { "id": "XP_027252447", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252447" } ] } ], "protein_names": [ { "name": "Keratin, type II cytoskeletal 78", "type": "synonym", "evidence": [ { "id": "A0A9J7FBV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBV6/entry#names_and_taxonomy" } ] }, { "name": "keratin, type II cytoskeletal 78", "type": "synonym", "evidence": [ { "id": "XP_027252447", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252447" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252447", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252447" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBV6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774159", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBV6", "locus": {} } ], "crossref": [ { "id": "100774159", "url": "https://www.ncbi.nlm.nih.gov/gene/100774159", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774159", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774159", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FBV6", "url": "https://www.orthodb.org/?gene=A0A9J7FBV6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252447", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252447", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSPCRTQRGFSARSACSAFSGARGRAGFSSRSLSSSRRCRGSSCERVWGAEARQGLRFGRGSGGPGLSQCPPGGIQAVTVNQSLLTPLKIEVDPQFQVVKTQETQEIRTLNNQFASFIDKVRFLEQQNKVLETKWELLQQLQGNRSPQGLEPIFEACLARLRQQLEELQRERGALDSELKTYQDQEDEYKSKYDQEAHKHALVQNDFVVLKKDVDEVFQSKMDLEGKLESLREYVCFLTRLYEEELGQLQTQADDMSVVLSMDNNRCLDFSDIIAEVRARYEEITQTSKAEAEAVFQTKYQELQASAQLQGDSMKEVRMQISQLRQTIQKLQSQISSLKMQNGTLQSAIADAEQHGEMALRDAQAKLDELETALRTAKQDMAQMLREYQELMGTKLSLDVEIAMYRRLLESEECRISKEYTSQVTVSTAEGRVVVPGGVGGGQVVIPGRIGGGQMIVPGRIGGGQVVIPGRINGGQMVIPGRVDGGQKVIPGRVDGGQVVKPGEDCRGQMVKPGGVDGGQMVIPGRVDGGQMVIPGRVDGGQMVIPGRVDGGQKVIPGIVDGGQMVMPGGIDEGQVIVPGEDCRGQMAMPRGDCRGQNVIPGRVDGGQMVMPGGDCRGQIVMSGGDCGGQMVMPGGVDGGQMVMPGGDCRGQMVIPGGDCRGQMVMPGRDCGGQNFIPGRVDGGQMVIPGGDCRGQMVMSGGDCGGQMVMSGGDCGGQMVMSGGDCGGQMVTPGGDCRGQMVVPGGVGDGTCGLRGWKGSFGSRGCSSIVTGGFDVPQGSGCSPSMSSCSVSGSGFSSGSGSCCRTILKKTVESSRKTSVIY", "length": 824, "header": "tr|A0A9J7FBV6-1|A0A9J7FBV6_CRIGR Isoform 1 of Keratin, type II cytoskeletal 78 OS=Cricetulus griseus OX=10029 GN=LOC100774159 PE=3 SV=1 CANONICAL=A0A9J7FBV6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBV6/entry", "sequence": { "sequence": "MSLSPCRTQRGFSARSACSAFSGARGRAGFSSRSLSSSRRCRGSSCERVWGAEARQGLRFGRGSGGPGLSQCPPGGIQAVTVNQSLLTPLKIEVDPQFQVVKTQETQEIRTLNNQFASFIDKVRFLEQQNKVLETKWELLQQLQGNRSPQGLEPIFEACLARLRQQLEELQRERGALDSELKTYQDQEDEYKSKYDQEAHKHALVQNDFVVLKKDVDEVFQSKMDLEGKLESLREYVCFLTRLYEEELGQLQTQADDMSVVLSMDNNRCLDFSDIIAEVRARYEEITQTSKAEAEAVFQTKYQELQASAQLQGDSMKEVRMQISQLRQTIQKLQSQISSLKMQNGTLQSAIADAEQHGEMALRDAQAKLDELETALRTAKQDMAQMLREYQELMGTKLSLDVEIAMYRRLLESEECRISKEYTSQVTVSTAEGRVVVPGGVGGGQVVIPGRIGGGQMIVPGRIGGGQVVIPGRINGGQMVIPGRVDGGQKVIPGRVDGGQVVKPGEDCRGQMVKPGGVDGGQMVIPGRVDGGQMVIPGRVDGGQMVIPGRVDGGQKVIPGIVDGGQMVMPGGIDEGQVIVPGEDCRGQMAMPRGDCRGQNVIPGRVDGGQMVMPGGDCRGQIVMSGGDCGGQMVMPGGVDGGQMVMPGGDCRGQMVIPGGDCRGQMVMPGRDCGGQNFIPGRVDGGQMVIPGGDCRGQMVMSGGDCGGQMVMSGGDCGGQMVMSGGDCGGQMVTPGGDCRGQMVVPGGVGDGTCGLRGWKGSFGSRGCSSIVTGGFDVPQGSGCSPSMSSCSVSGSGFSSGSGSCCRTILKKTVESSRKTSVIY", "length": 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"isoform_ac": "A0A9J7FBY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBY7/entry", "sequence": { "sequence": "MLSFWDVAIEFSPEERECLEPAQWNLYRDVMLENYSHLDFLGLAVPKPHLVTFLEQKQEPSGVKRQAAATVHPGTTPNDYNVYNKTIECNSVSIQHQRIYTKEKPCKCKECGKALSSNRTLSIHQRLHRRKKTYKCEECGKVLRSSKTLSIHQRLHTGEKPYKCKECHKAFSTRSSLFIHQKNHTDEKPYKCEECGRSFYYPSMLKQHQRIHSGEKPYKCEECGRAFYDPSFLKNHQKIHCGEKPYKCEECHRAFRYHSNLKNHKAVHTGEKLYHRKLSRKGFTKPALLSENKPARIAEKAYKCEECGKCFASSASLSRHQRIHSEDKSHKCAECGKTFSLFSVLQEHQRVHTGEKPYKCDECGKCFFSSSSLKRHQRIHCDDNPYKCEECGRCFHSWSALRGHHIVHSGEKPYKCEECHKAFRYHASLKDHKATHTREKIYKCELSRKGFTKPALLIEKKTAHTTEQTHEGEECGKCFFSSSSLRKHQRNHCEDTPYKCAECGRCYHSWSDLRGHQTVHTGEKPYKCEECHKAYRHVSSFRKHRRVHTGEKSCSNDFSLQ", "length": 561, "header": "tr|A0A9J7FBY7-1|A0A9J7FDK0_CRIGR Computationally mapped isoform of Zinc finger protein 58 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751600 PE=3 SV=1 CANONICAL=A0A9J7FDK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0/entry", "sequence": { "sequence": "MQLQRSTAVQPTLFLPTILYSRSETSPKTMNITTQASGIPSLRLLGNVVKETVTSQADVQELPIQLLVSKSASSPNLGTSLPCCVSCCVSDLEEMLSFWDVAIEFSPEERECLEPAQWNLYRDVMLENYSHLDFLGLAVPKPHLVTFLEQKQEPSGVKRQAAATVHPGTTPNDYNVYNKTIECNSVSIQHQRIYTKEKPCKCKECGKALSSNRTLSIHQRLHRRKKTYKCEECGKVLRSSKTLSIHQRLHTGEKPYKCKECHKAFSTRSSLFIHQKNHTDEKPYKCEECGRSFYYPSMLKQHQRIHSGEKPYKCEECGRAFYDPSFLKNHQKIHCGEKPYKCEECHRAFRYHSNLKNHKAVHTGEKLYHRKLSRKGFTKPALLSENKPARIAEKAYKCEECGKCFASSASLSRHQRIHSEDKSHKCAECGKTFSLFSVLQEHQRVHTGEKPYKCDECGKCFFSSSSLKRHQRIHCDDNPYKCEECGRCFHSWSALRGHHIVHSGEKPYKCEECHKAFRYHASLKDHKATHTREKIYKCELSRKGFTKPALLIEKKTAHTTEQTHEGEECGKCFFSSSSLRKHQRNHCEDTPYKCAECGRCYHSWSDLRGHQTVHTGEKPYKCEECHKAYRHVSSFRKHRRVHTGEKSCSNDFSLQ", "length": 655, "header": "tr|A0A9J7FDK0-1|A0A9J7FDK0_CRIGR Isoform 1 of Zinc finger protein 58 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751600 PE=3 SV=1 CANONICAL=A0A9J7FDK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8Z3/entry", "sequence": { "sequence": "MQLQRRSETSPKTMNITTQASGIPSLRLLGNVVKETVTSQADVQELPIQLLVSKSASSPNLGTSLPCCVSCCVSDLEEMLSFWDVAIEFSPEERECLEPAQWNLYRDVMLENYSHLDFLGLAVPKPHLVTFLEQKQEPSGVKRQAAATVHPGTTPNDYNVYNKTIECNSVSIQHQRIYTKEKPCKCKECGKALSSNRTLSIHQRLHRRKKTYKCEECGKVLRSSKTLSIHQRLHTGEKPYKCKECHKAFSTRSSLFIHQKNHTDEKPYKCEECGRSFYYPSMLKQHQRIHSGEKPYKCEECGRAFYDPSFLKNHQKIHCGEKPYKCEECHRAFRYHSNLKNHKAVHTGEKLYHRKLSRKGFTKPALLSENKPARIAEKAYKCEECGKCFASSASLSRHQRIHSEDKSHKCAECGKTFSLFSVLQEHQRVHTGEKPYKCDECGKCFFSSSSLKRHQRIHCDDNPYKCEECGRCFHSWSALRGHHIVHSGEKPYKCEECHKAFRYHASLKDHKATHTREKIYKCELSRKGFTKPALLIEKKTAHTTEQTHEGEECGKCFFSSSSLRKHQRNHCEDTPYKCAECGRCYHSWSDLRGHQTVHTGEKPYKCEECHKAYRHVSSFRKHRRVHTGEKSCSNDFSLQ", "length": 639, "header": "tr|A0A9J7J8Z3-1|A0A9J7J8Z3_CRIGR Computationally mapped isoform of Zinc finger protein 58 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751600 PE=3 SV=1 CANONICAL=A0A9J7FDK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEF2/entry", "sequence": { "sequence": "MQLQRSTAVQPTLFLPTILYSRSETSPKTMNITTQASGIPSLRLLGNVVKETVTSQADVQELPIQLLVSKSASSPNLGTSLPCCVSCCVSDLEEMLSFWDVAIEFSPEERECLEPAQWNLYRDVMLENYSHLDFLGTTPNDYNVYNKTIECNSVSIQHQRIYTKEKPCKCKECGKALSSNRTLSIHQRLHRRKKTYKCEECGKVLRSSKTLSIHQRLHTGEKPYKCKECHKAFSTRSSLFIHQKNHTDEKPYKCEECGRSFYYPSMLKQHQRIHSGEKPYKCEECGRAFYDPSFLKNHQKIHCGEKPYKCEECHRAFRYHSNLKNHKAVHTGEKLYHRKLSRKGFTKPALLSENKPARIAEKAYKCEECGKCFASSASLSRHQRIHSEDKSHKCAECGKTFSLFSVLQEHQRVHTGEKPYKCDECGKCFFSSSSLKRHQRIHCDDNPYKCEECGRCFHSWSALRGHHIVHSGEKPYKCEECHKAFRYHASLKDHKATHTREKIYKCELSRKGFTKPALLIEKKTAHTTEQTHEGEECGKCFFSSSSLRKHQRNHCEDTPYKCAECGRCYHSWSDLRGHQTVHTGEKPYKCEECHKAYRHVSSFRKHRRVHTGEKSCSNDFSLQ", "length": 623, "header": "tr|A0A9J7JEF2-1|A0A9J7JEF2_CRIGR Computationally mapped isoform of Zinc finger protein 58 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100751600 PE=3 SV=1 CANONICAL=A0A9J7FDK0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEL6/entry", "sequence": { "sequence": "MQLQRSETSPKTMNITTQASGIPSLRLLGNVVKETVTSQADVQELPIQLLVSKSASSPNLGTSLPCCVSCCVSDLEEMLSFWDVAIEFSPEERECLEPAQWNLYRDVMLENYSHLDFLGLAVPKPHLVTFLEQKQEPSGVKRQAAATVHPGTTPNDYNVYNKTIECNSVSIQHQRIYTKEKPCKCKECGKALSSNRTLSIHQRLHRRKKTYKCEECGKVLRSSKTLSIHQRLHTGEKPYKCKECHKAFSTRSSLFIHQKNHTDEKPYKCEECGRSFYYPSMLKQHQRIHSGEKPYKCEECGRAFYDPSFLKNHQKIHCGEKPYKCEECHRAFRYHSNLKNHKAVHTGEKLYHRKLSRKGFTKPALLSENKPARIAEKAYKCEECGKCFASSASLSRHQRIHSEDKSHKCAECGKTFSLFSVLQEHQRVHTGEKPYKCDECGKCFFSSSSLKRHQRIHCDDNPYKCEECGRCFHSWSALRGHHIVHSGEKPYKCEECHKAFRYHASLKDHKATHTREKIYKCELSRKGFTKPALLIEKKTAHTTEQTHEGEECGKCFFSSSSLRKHQRNHCEDTPYKCAECGRCYHSWSDLRGHQTVHTGEKPYKCEECHKAYRHVSSFRKHRRVHTGEKSCSNDFSLQ", "length": 638, "header": "tr|A0A9J7JEL6-1|A0A9J7JEL6_CRIGR Computationally mapped isoform of Zinc finger protein 58 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100751600 PE=3 SV=1 CANONICAL=A0A9J7FDK0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBY7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBY7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBY7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FDK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 200, "end_pos": 227, "start_aa": "Cys", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7FDK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK0" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 167, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 212, "end_pos": 214 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 31, "end_pos": 33 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FBZ1-1", "uniprot_ac": "A0A9J7FBZ1", "uniprot_id": "A0A9J7FBZ1_CRIGR", "mass": { "chemical_mass": 59658.0, "monoisotopic_mass": 59658.0 }, "refseq": { "ac": "XP_027253057", "name": "reticulophagy regulator 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253057" }, "gene_names": [ { "name": "Retreg2", "type": "recommended", "evidence": [ { "id": "A0A9J7FBZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" } ] }, { "name": "Retreg2", "type": "synonym", "evidence": [ { "id": "XP_027253057", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253057" } ] } ], "protein_names": [ { "name": "Reticulophagy regulator 2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7FBZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1/entry#names_and_taxonomy" } ] }, { "name": "reticulophagy regulator 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027253057", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253057" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253057" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Retreg2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FBZ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FBZ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22561", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22561", "database": "CDD", "categories": [ "Protein Classification" ] 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20952:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20952:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253057", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MMV4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MMV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATGGGGANTGAGGTSGLGLGLGLSLGMSETTSDAEEEAAAAEAVGRLATSLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSISLLTYFLLDLWHPRFLPDVSASPPEEPHSDSEGAGSGAQPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNALPAGDEPLAETESESEAELAGFSPVVRSKEDGVSNRRLKGSWVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGEGEETELAPPEDLLNAPPAFSKQALDTEEEAIAKETLLQLSSPLHFVNTHFNGAGSPQDGVKCSPGGPVKTLSPEAVSGDLMAAPSTLSPPLCLAESGPVTLLSPSVLPPLPQDSPQPLAAPEEEEAVTTEDFELLDQGELEQLNAELGLGPEMPPKPPDALPPPPLGPDSHSLVQSDQEAHTVVEP", "length": 558, "header": "tr|A0A9J7FBZ1-1|A0A9J7FBZ1_CRIGR Isoform 1 of Reticulophagy regulator 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Retreg2 PE=4 SV=1 CANONICAL=A0A9J7FBZ1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MMV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMV4/entry", "sequence": { "sequence": "MATGGGGANTGAGGTSGLGLGLGLSLGMSETTSDAEEEAAAAEAVGRLATSLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSISLLTYFLLDLWHPRFLPDVSASPPEEPHSDSEGAGSGAQPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNALPAGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGEGEETELAPPEDLLNAPPAFSKQALDTEEEAIAKETLLQLSSPLHFVNTHFNGAGSPQDGVKCSPGGPVKTLSPEAVSGDLMAAPSTLSPPLCLAESGPVTLLSPSVLPPLPQDSPQPLAAPEEEEAVTTEDFELLDQGELEQLNAELGLGPEMPPKPPDALPPPPLGPDSHSLVQSDQEAHTVVEP", "length": 541, "header": "tr|A0A8C2MMV4-1|A0A8C2MMV4_CRIGR Computationally mapped isoform of Reticulophagy regulator 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Retreg2 PE=4 SV=1 CANONICAL=A0A9J7FBZ1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1/entry", "sequence": { "sequence": "MATGGGGANTGAGGTSGLGLGLGLSLGMSETTSDAEEEAAAAEAVGRLATSLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSISLLTYFLLDLWHPRFLPDVSASPPEEPHSDSEGAGSGAQPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNALPAGDEPLAETESESEAELAGFSPVVRSKEDGVSNRRLKGSWVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGEGEETELAPPEDLLNAPPAFSKQALDTEEEAIAKETLLQLSSPLHFVNTHFNGAGSPQDGVKCSPGGPVKTLSPEAVSGDLMAAPSTLSPPLCLAESGPVTLLSPSVLPPLPQDSPQPLAAPEEEEAVTTEDFELLDQGELEQLNAELGLGPEMPPKPPDALPPPPLGPDSHSLVQSDQEAHTVVEP", "length": 558, "header": "tr|A0A9J7FBZ1-1|A0A9J7FBZ1_CRIGR Isoform 1 of Reticulophagy regulator 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Retreg2 PE=4 SV=1 CANONICAL=A0A9J7FBZ1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 15, "start_aa": "Thr", "end_pos": 15, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr15", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774602", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774602", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum-autophagosome adaptor activity", "id": "GO:0140506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FBZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBZ1" }, { "id": "PF24456", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RETREG1-3/ARL6IP-like N-terminal reticulon-homology", "eco_id": "ECO_0000259", "start_pos": 59, "end_pos": 243, "start_aa": "Trp", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 15 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FC02-1", "uniprot_ac": "A0A9J7FC02", "uniprot_id": "A0A9J7FC02_CRIGR", "mass": { "chemical_mass": 16534.0, "monoisotopic_mass": 16534.0 }, "refseq": { "ac": "XP_003510125", "name": "fatty acid-binding protein 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510125" }, "gene_names": [ { "name": "Fabp12", "type": "recommended", "evidence": [ { "id": "A0A9J7FC02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC02" } ] }, { "name": "Fabp12", "type": "synonym", "evidence": [ { "id": "XP_003510125", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510125" } ] } ], "protein_names": [ { "name": "Fatty acid-binding protein 12", "type": "synonym", "evidence": [ { "id": "A0A9J7FC02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC02/entry#names_and_taxonomy" } ] }, { "name": "fatty acid-binding protein 12", "type": "synonym", "evidence": [ { "id": "XP_003510125", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510125" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614824.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003510125", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510125" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FC02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC02" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fabp12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC02", "locus": {} } ], "crossref": [ { "id": "A0A9J7FC02", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FC02", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19617", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19617", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761683", "url": "https://www.ncbi.nlm.nih.gov/gene/100761683", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000463", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000463", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761683", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761683", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DWDGKEN", "url": "https://omabrowser.org/oma/group/DWDGKEN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FC02", "url": "https://www.orthodb.org/?gene=A0A9J7FC02", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11955", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11955", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003510125", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003510125", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FC02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FC02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMDQLQGTWKSVSCENFENYMKELGVGRASRKLGCLAKPTVTISTVGDMITIKTKSIFKNNEISFKLGEEFEEITPSGCIKSTVTLDNDSLVQVQDWDGKEAMIRRRLVDGKMVVESAVNNVTCTRTYQRVLEHSISRSSCDPTTDAI", "length": 148, "header": "tr|A0A9J7FC02-1|A0A9J7FC02_CRIGR Isoform 1 of Fatty acid-binding protein 12 OS=Cricetulus griseus OX=10029 GN=Fabp12 PE=3 SV=1 CANONICAL=A0A9J7FC02-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FC02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC02/entry", "sequence": { "sequence": "MMDQLQGTWKSVSCENFENYMKELGVGRASRKLGCLAKPTVTISTVGDMITIKTKSIFKNNEISFKLGEEFEEITPSGCIKSTVTLDNDSLVQVQDWDGKEAMIRRRLVDGKMVVESAVNNVTCTRTYQRVLEHSISRSSCDPTTDAI", "length": 148, "header": "tr|A0A9J7FC02-1|A0A9J7FC02_CRIGR Isoform 1 of Fatty acid-binding protein 12 OS=Cricetulus griseus OX=10029 GN=Fabp12 PE=3 SV=1 CANONICAL=A0A9J7FC02-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613698.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007628520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007628520" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FC07", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC07" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773391", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC07", "locus": {} } ], "crossref": [ { "id": "A0A9J7FC07", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FC07", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773391", "url": "https://www.ncbi.nlm.nih.gov/gene/100773391", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773391", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773391", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FC07", "url": "https://www.orthodb.org/?gene=A0A9J7FC07", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11785", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11785", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11785:SF348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11785:SF348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007628520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007628520", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FC07", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FC07-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQLLRVVGFTYGNMVLLSSTIGTGIFVSPKEVLKYCSMNIPIFLSMWAVGGLLSLMNALCLAELATTFPVSGVSYYFLKQSLGYTAAFLSIWIRLFSHILGISAQSLLIATYLIQPFYSGCLAPELPKKCLALSFLWLFGILNAQGIKTVIQFQAIGNLMKMAVLCLISVTGIVLLVTGDKENVTRFENGLDAELPDVSQIVEAFLQVYYSYVGSSLLINIAGEIKNPTNTIPKSLISGLSIVMVFYLLTNISYVAVLTPQEIISSDSVAVTWMYRVFPFIQWATSLGISAAMMNCLSSGLLSGSRIIYAASQDGQLPFIYSMLNDHHNPVVGAILIIILSSIAIIISKLIYLMKYVGLGAWCINFLNMIGLLKMRYQKPNLPRPYKVWLPFVFGTIVLSVFIIFIPVILSPNIEHVYQVVFLFCGLLCYWLQAHFNRHAVCFDTITCYWQLFFNVSPSEDGDNLIPSLNPD", "length": 472, "header": "tr|A0A9J7FC07-1|A0A9J7FC07_CRIGR Isoform 1 of Solute carrier family 7 member 13-like OS=Cricetulus griseus OX=10029 GN=LOC100773391 PE=3 SV=1 CANONICAL=A0A9J7FC07-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FC07-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC07/entry", "sequence": { "sequence": "MQLLRVVGFTYGNMVLLSSTIGTGIFVSPKEVLKYCSMNIPIFLSMWAVGGLLSLMNALCLAELATTFPVSGVSYYFLKQSLGYTAAFLSIWIRLFSHILGISAQSLLIATYLIQPFYSGCLAPELPKKCLALSFLWLFGILNAQGIKTVIQFQAIGNLMKMAVLCLISVTGIVLLVTGDKENVTRFENGLDAELPDVSQIVEAFLQVYYSYVGSSLLINIAGEIKNPTNTIPKSLISGLSIVMVFYLLTNISYVAVLTPQEIISSDSVAVTWMYRVFPFIQWATSLGISAAMMNCLSSGLLSGSRIIYAASQDGQLPFIYSMLNDHHNPVVGAILIIILSSIAIIISKLIYLMKYVGLGAWCINFLNMIGLLKMRYQKPNLPRPYKVWLPFVFGTIVLSVFIIFIPVILSPNIEHVYQVVFLFCGLLCYWLQAHFNRHAVCFDTITCYWQLFFNVSPSEDGDNLIPSLNPD", "length": 472, "header": "tr|A0A9J7FC07-1|A0A9J7FC07_CRIGR Isoform 1 of Solute carrier family 7 member 13-like OS=Cricetulus griseus OX=10029 GN=LOC100773391 PE=3 SV=1 CANONICAL=A0A9J7FC07-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256607", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256607" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCA0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ik", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCA0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCA0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCA0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754728", "url": "https://www.ncbi.nlm.nih.gov/gene/100754728", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012492", 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"monoisotopic_mass": 15564.0 }, "refseq": { "ac": "XP_027256201", "name": "tumor suppressor ARF isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256201" }, "gene_names": [ { "name": "LOC100764983", "type": "recommended", "evidence": [ { "id": "A0A9J7FCD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2" } ] }, { "name": "LOC100764983", "type": "synonym", "evidence": [ { "id": "XP_027256201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256201" } ] } ], "protein_names": [ { "name": "Tumor suppressor ARF isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FCD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2/entry#names_and_taxonomy" } ] }, { "name": "tumor suppressor ARF isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027256201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256201" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256201", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256201" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100764983", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCD2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCD2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764983", "url": "https://www.ncbi.nlm.nih.gov/gene/100764983", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764983", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764983", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FCD2", "url": "https://www.orthodb.org/?gene=A0A9J7FCD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF07392", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07392", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256201", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256201", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRGRRFSPPVSHGGDRWASAAAGSMGYRFLVTVRIRRRRADRPPRVRAFVVQFPRSSRHRSASRARAVVALLLMLARSQRGPRLHPGAGHDDGQHPSSQTAAALRCRTELRGPSHPLPTRARCSAGGLLGNSEDTAPGGGAAGCA", "length": 146, "header": "tr|A0A9J7FCD2-1|A0A9J7FCD2_CRIGR Isoform 1 of Tumor suppressor ARF isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764983 PE=4 SV=1 CANONICAL=A0A9J7FCD2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2/entry", "sequence": { "sequence": "MGRGRRFSPPVSHGGDRWASAAAGSMGYRFLVTVRIRRRRADRPPRVRAFVVQFPRSSRHRSASRARAVVALLLMLARSQRGPRLHPGAGHDDGQHPSSQTAAALRCRTELRGPSHPLPTRARCSAGGLLGNSEDTAPGGGAAGCA", "length": 146, "header": "tr|A0A9J7FCD2-1|A0A9J7FCD2_CRIGR Isoform 1 of Tumor suppressor ARF isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764983 PE=4 SV=1 CANONICAL=A0A9J7FCD2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764983", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764983", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500917" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613817.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003500917.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500917", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500917" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zmym1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761062", "url": "https://www.ncbi.nlm.nih.gov/gene/100761062", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008906", "url": 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Classification" ] }, { "id": "PTHR46289", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46289", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46289:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46289:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500917", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500917", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCD3-1", "url": 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"id": "PF16492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253891", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253891", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METALRQTPEKRQVFFLTILLLWGEAGSETIRYSMPEETESGYLVANLEKDLRLRVGELATRGAQIHYKGNKELLQLDTETGNLLLKEKLDREELCGVTEPCLLHFQLILENPVQFFQTDLQLTDINDHSPEFPHKEMLLKIPESAQPGTVFPLKAAQDSDIGNNAVQNYTVSSNLHFHVVTLSRADGRKYPELVLDRALDREEQPELTLTLTAVDGGSPPRSGTTTVRIEVVDINDNAPQFVQSLYEVQVPENSPVDALVLTVSAMDLDAGIHGNVVYSLFQGGGASQPFAIHGVTGEIRLSKELDFEVTNHYNIEIAATDGGGFSGKCNVAVQVLDVNDNAPELTIRKLTSPIPENSLETVVAVFSVSDPDSGDNGRVVCSIQNDLPFLLKPTFKNYYTLVTEGPLDRESRAEYNITITVTDLGTPRLATQHTITVQVSDVNDNAPAFTQTSYTLFVQENNSPALHIGTISATDSDSGSNALITYSLLPTHDPQLALSSLISINADNGQLFALRALDYEALQTFEFRVGATDQGLPELSSQALVRVLVLDANDNAPFVLYPLQNASAPYTELLPRAAEPGYLVTKVVAVDHDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLTERDAPKHRLLLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARDSVQDEDKLTLYLVIALASVSSLFLLSVLLFVGVRLCRRARASSLGGCSVPEGHFPGHLVDFSGEGTLSQSYQYEVCLREGSGTASPHLSKDSGDFWKFQYSI", "length": 780, "header": "tr|A0A9J7FCK9-1|A0A9J7FCK9_CRIGR Isoform 1 of Protocadherin beta-6-like OS=Cricetulus griseus OX=10029 GN=LOC113833706 PE=4 SV=1 CANONICAL=A0A9J7FCK9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK9/entry", "sequence": { "sequence": "METALRQTPEKRQVFFLTILLLWGEAGSETIRYSMPEETESGYLVANLEKDLRLRVGELATRGAQIHYKGNKELLQLDTETGNLLLKEKLDREELCGVTEPCLLHFQLILENPVQFFQTDLQLTDINDHSPEFPHKEMLLKIPESAQPGTVFPLKAAQDSDIGNNAVQNYTVSSNLHFHVVTLSRADGRKYPELVLDRALDREEQPELTLTLTAVDGGSPPRSGTTTVRIEVVDINDNAPQFVQSLYEVQVPENSPVDALVLTVSAMDLDAGIHGNVVYSLFQGGGASQPFAIHGVTGEIRLSKELDFEVTNHYNIEIAATDGGGFSGKCNVAVQVLDVNDNAPELTIRKLTSPIPENSLETVVAVFSVSDPDSGDNGRVVCSIQNDLPFLLKPTFKNYYTLVTEGPLDRESRAEYNITITVTDLGTPRLATQHTITVQVSDVNDNAPAFTQTSYTLFVQENNSPALHIGTISATDSDSGSNALITYSLLPTHDPQLALSSLISINADNGQLFALRALDYEALQTFEFRVGATDQGLPELSSQALVRVLVLDANDNAPFVLYPLQNASAPYTELLPRAAEPGYLVTKVVAVDHDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLTERDAPKHRLLLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARDSVQDEDKLTLYLVIALASVSSLFLLSVLLFVGVRLCRRARASSLGGCSVPEGHFPGHLVDFSGEGTLSQSYQYEVCLREGSGTASPHLSKDSGDFWKFQYSI", "length": 780, "header": "tr|A0A9J7FCK9-1|A0A9J7FCK9_CRIGR Isoform 1 of Protocadherin beta-6-like OS=Cricetulus griseus OX=10029 GN=LOC113833706 PE=4 SV=1 CANONICAL=A0A9J7FCK9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 462, "end_pos": 464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 566, "end_pos": 568, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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"yes" } }, { "uniprot_canonical_ac": "A0A9J7FCV5-1", "uniprot_ac": "A0A9J7FCV5", "uniprot_id": "A0A9J7FCV5_CRIGR", "mass": { "chemical_mass": 87662.0, "monoisotopic_mass": 87662.0 }, "refseq": { "ac": "XP_027253915", "name": "protocadherin alpha-7-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253915" }, "gene_names": [ { "name": "LOC103164308", "type": "recommended", "evidence": [ { "id": "A0A9J7FCV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCV5" } ] }, { "name": "LOC103164308", "type": "synonym", "evidence": [ { "id": "XP_027253915", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253915" } ] } ], "protein_names": [ { "name": "Protocadherin alpha-7-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7FCV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCV5/entry#names_and_taxonomy" } ] }, { "name": "protocadherin alpha-7-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027253915", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253915" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253915", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253915" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCV5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103164308", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCV5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCV5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCV5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein 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"uniprot_ac": "A0A9J7FCN0", "uniprot_id": "A0A9J7FCN0_CRIGR", "mass": { "chemical_mass": 17357.0, "monoisotopic_mass": 17357.0 }, "refseq": { "ac": "XP_027253940", "name": "transcription factor HES-2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253940" }, "gene_names": [ { "name": "Hes2", "type": "recommended", "evidence": [ { "id": "A0A9J7FCN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCN0" } ] }, { "name": "Hes2", "type": "synonym", "evidence": [ { "id": "XP_027253940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253940" } ] } ], "protein_names": [ { "name": "Transcription factor HES-2", "type": "synonym", "evidence": [ { "id": "A0A9J7FCN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCN0/entry#names_and_taxonomy" } ] }, { "name": "transcription factor HES-2", "type": "synonym", "evidence": [ { "id": "XP_027253940", "database": "RefSeq", "url": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253940" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCN0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hes2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCN0", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCN0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCN0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756407", "url": "https://www.ncbi.nlm.nih.gov/gene/100756407", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756407", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756407", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FCN0", "url": "https://www.orthodb.org/?gene=A0A9J7FCN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10985", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10985", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07527", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07527", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253940", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLPRRVGDAAELRKTLKPLLEKRRRARINESLSQLKGLVLPLLGAETSRYSKLEKADILEMTVRFLQEQPVSPYPTAAPEPLDSYLEGYRACLARLARMLPACSVLEPAVSARLLEHLRQRTVSGVPPSQTPTPAPAPAPSPQVPPPGSPGLWRPW", "length": 157, "header": "tr|A0A9J7FCN0-1|A0A9J7FCN0_CRIGR Isoform 1 of Transcription factor HES-2 OS=Cricetulus griseus OX=10029 GN=Hes2 PE=4 SV=1 CANONICAL=A0A9J7FCN0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCN0/entry", "sequence": { "sequence": "MRLPRRVGDAAELRKTLKPLLEKRRRARINESLSQLKGLVLPLLGAETSRYSKLEKADILEMTVRFLQEQPVSPYPTAAPEPLDSYLEGYRACLARLARMLPACSVLEPAVSARLLEHLRQRTVSGVPPSQTPTPAPAPAPSPQVPPPGSPGLWRPW", "length": 157, "header": "tr|A0A9J7FCN0-1|A0A9J7FCN0_CRIGR Isoform 1 of Transcription factor HES-2 OS=Cricetulus griseus OX=10029 GN=Hes2 PE=4 SV=1 CANONICAL=A0A9J7FCN0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 134, "start_aa": "Thr", "end_pos": 134, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr134", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 77, "start_aa": "Thr", "end_pos": 77, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr77", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254002" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCS7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mad2l2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCS7", "locus": {} } ], "crossref": [ { "id": "100761766", "url": "https://www.ncbi.nlm.nih.gov/gene/100761766", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003511", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003511", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761766", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761766", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FCS7", "url": "https://www.orthodb.org/?gene=A0A9J7FCS7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11842", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11842", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11842:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11842:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02301", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02301", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTLTRQDLNFGQVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVMVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKHS", "length": 211, "header": "tr|A0A9J7FCS7-1|A0A9J7FCS7_CRIGR Isoform 1 of Mitotic spindle assembly checkpoint protein MAD2B OS=Cricetulus griseus OX=10029 GN=Mad2l2 PE=4 SV=1 CANONICAL=A0A9J7FCS7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCS7/entry", "sequence": { "sequence": "MTTLTRQDLNFGQVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVMVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKHS", "length": 211, "header": "tr|A0A9J7FCS7-1|A0A9J7FCS7_CRIGR Isoform 1 of Mitotic spindle assembly checkpoint protein MAD2B OS=Cricetulus griseus OX=10029 GN=Mad2l2 PE=4 SV=1 CANONICAL=A0A9J7FCS7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253890", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253890" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCU5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774043", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCU5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FCU5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FCU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein 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"MEGRLDRAVQKRQVLFLCVFLGASWAGSEQLQYFVAEETERGTFLANLAKDLGLGLGELSSRGARIVSDQNTRFLLLSPLTGDLILNEKLDREELCGPTEPCVLTFQLLLENPFQIHRAALHIGDINDNSPVFLDKEIPLKISEITTPGTTFLLERAQDSDVGMNSLSNYTISPNQYFSIHVHDGGEGTIFPELVLDQTLDREELAEFTLTLTALDGGSPPRSGTALVRILVLDINDNSPEFVQSLYKVQSYENTPVGSLVVAVSARDLDTGSYGQIVYAFFYATERILQTFQINSTTGKIYLKGELNYEAIQSYSITIQAKDGGGLSGKCTVVVEVVDVNDNPPELLLSSLTNPIAENSPETVVAVFRIRDRDSGNNGKTICSIPHDLPFVLKPSVENFYTLVTEMPLDRESHTEYNITITVTDLGTPRLTTQHTITVQVSDVNDNAPAFTQTSYTLFVQENNSPALHIGTISATDSDSGSNAHITYSLLPTHDPQLALSSLISINADNGQLFALRALDYEALQTFEFRVGATDQGSPALSSQALVRVLVLDANDNAPFVLYPLQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLSERDAPKHRLLLLVKDNGDPPRSASVTLQVLVVDGFSQPYLPLPEVARDPAHDEDALTLYLVIALASVSSLFLLSVLLFVGVRLCRRARAASLGGCSVPEGHFPGHLVDVSRSGTLSQSYQYEVCLTGGSGISSEFNFLKPIAPNFLRSTGREAE", "length": 785, "header": "tr|A0A9J7FCU5-1|A0A9J7FCU5_CRIGR Isoform 1 of Protocadherin beta-7-like OS=Cricetulus griseus OX=10029 GN=LOC100774043 PE=4 SV=1 CANONICAL=A0A9J7FCU5-1" }, "isoforms": [ { "isoform_ac": 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OS=Cricetulus griseus OX=10029 GN=LOC100774043 PE=4 SV=1 CANONICAL=A0A9J7FCU5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 99, "start_aa": "Thr", "end_pos": 99, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr99", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7FEX1", "uniprot_id": "A0A9J7FEX1_CRIGR", "mass": { "chemical_mass": 368163.0, "monoisotopic_mass": 368163.0 }, "refseq": { "ac": "XP_027257117", "name": "ciliogenesis and planar polarity effector 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257117" }, "gene_names": [ { "name": "Cplane1", "type": "recommended", "evidence": [ { "id": "A0A9J7FEX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1" } ] }, { "name": "Cplane1", "type": "synonym", "evidence": [ { "id": "XP_027257117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257117" } ] } ], "protein_names": [ { "name": "Ciliogenesis and planar polarity effector 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FEX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1/entry#names_and_taxonomy" } ] }, { "name": "ciliogenesis and planar polarity effector 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027257117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257117" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257117", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257117" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cplane1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1", "locus": {} } ], "crossref": [ { "id": "100770827", "url": "https://www.ncbi.nlm.nih.gov/gene/100770827", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770827", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770827", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FEX1", "url": "https://www.orthodb.org/?gene=A0A9J7FEX1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FGY0", "url": "https://www.orthodb.org/?gene=A0A9J7FGY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14492", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14492", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14492:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14492:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15392", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15392", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257117", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257117", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRU3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K221", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K221", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K221-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K221-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3262, "header": "tr|A0A9J7FEX1-1|A0A9J7FEX1_CRIGR Isoform 1 of Ciliogenesis and planar polarity effector 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCW4/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3207, "header": "tr|A0A9J7FCW4-1|A0A9J7FEX1_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDH5/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3238, "header": "tr|A0A9J7FDH5-1|A0A9J7FDH5_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FEX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3262, "header": "tr|A0A9J7FEX1-1|A0A9J7FEX1_CRIGR Isoform 1 of Ciliogenesis and planar polarity effector 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGQ1/entry", "sequence": { "sequence": "MVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 2844, "header": "tr|A0A9J7FGQ1-1|A0A9J7FGQ1_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X13 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGV5/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3227, "header": "tr|A0A9J7FGV5-1|A0A9J7FGV5_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGY0/entry", "sequence": { "sequence": "MLFLSKMRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3044, "header": "tr|A0A9J7FGY0-1|A0A9J7FGY0_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X12 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHR6/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3204, "header": "tr|A0A9J7FHR6-1|A0A9J7FHR6_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X9 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRU3/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3206, "header": "tr|A0A9J7GRU3-1|A0A9J7GRU3_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF76/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3257, "header": "tr|A0A9J7JF76-1|A0A9J7JF76_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF3/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWKMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3261, "header": "tr|A0A9J7JFF3-1|A0A9J7JFF3_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ0/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKVGAQKPRRKQSVSFQPEDSLVSNGSEVVMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3201, "header": "tr|A0A9J7JGQ0-1|A0A9J7JGQ0_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JV74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV74/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKEQLEHCGSQPLEKFDIPFDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3195, "header": "tr|A0A9J7JV74-1|A0A9J7JV74_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K221-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K221/entry", "sequence": { "sequence": "MEIRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVFFLAISSNDVWLSGVLTTGELFLWNKDQDCVKMIQVTEKPKEVIKATIASSLRLYLYVAENGKRVLLITSSGCILLWEYSELKNILSSKSLPLVGQWFQIIPEEAVLLPSSKDKEAVVDAVFVKNELFGDCCLCSFTFYSGECLKLTFLAIQWYENVFTSVRSLPFRVHWAQQEYLLCSLTPKCESVKSRGALISAFSRDGLALAVTLNQRDPKATQLLFINTLNFVTLCGGLKGCSNKNPVVPATLSRSYWVGDISWTHDSLFLACVLKRGSLVLLTCLGELLTLVTLGCSIEFGPAEFIPLHPLITYRPQQFTFQDSNNPVDSSASDSDPLRQRFSIKAHSRLPYLIISDGYMVTSLRFLDDQTPTALMRSLLIDSTQRLEEAYQSMMLSKPKHKGLNLRSLDSLRSSLLKRQGKEGSVHRTVPRFLQEEETMKLSETTDVQDSEGEEANEVEQFPNSSFPFCNQRKDLRFSIIKEGRLEFATMFDTVHAKDDSKETDRTTAELHCIQKKLLAAWTIGISKNVTEKNLMLNYTVLCITHFFYVLQFIKCPLPKSDLFLNESLKHNTWVLCVFQLFHQCLSVHYWDLRYKQDVGHLIKLTSNTVKLFLTQQQKNGLFSEKLLACLSLLRVVADHLDGICKLQPEAISASADGRKTAEMDSLMVPIFSALRESWSWDSPWKICPQVTNLVQKPSHRLIALWRLLYKQTLWYGAQLSQRIPDGDIQLTENITHEISFVKTLLCHLQTNLQMAGDSLNQALELTPINGEECFLLGSYEKSVHLWKKALQETQEKGGRRMCFLQLRYYLSLLYCHLYRYNLNDAQGLCDHLVREILSWSQLPVKDNKDCSDSEKSHCEFAVTRNVHPEAAVRVVQCMARFMAAYFTNEPLCILPPHSVNVLPPLHIKTEHSLRLIPLQHSKVASFVRDQNLSNVWTVEYALELLLIGGLIPEAVWLAHKLGDWKTSVSIGVAFQVFCKHDLNFVRFKKKGMNLPFNMIPAQIFQEKLQYFLGQPVSFEAKNEKGSRYKQFTDPIEEEDANLLFGSMQEVLKASVMADADIVSETLQLLMDSAKDFSKKLWGLVPVDLYLPAPPLYCPQPAVLSEEHGDNLLLKAEKDNRQKLSGILQRVLLLFRAARCSFAVAQWYILQLRWARKVMQKIRVKGSLPSLSSFPESLLNYCKGGIAFIRPGAAGDHKLDEVSIKALGCFRELCALCWMLHIRDKLSYSCRQYQKARENVKVEKDLEVEFDSCVVEHCFHALEWAYRMLPFSRFFNMEELIQDIILSLIGELPPVRKVAEIFVKAFPNPEAIRVPLREKYHSLQQKLRHGVVKGPQTEELMSVVMRSVHKVRVKALKRVQRNIGASEMNIWEPDEEEKPDAAPASDRFSLGTSLSRSTLTELGSSLVHSDADTFSETLSFEEKPWIHLYQRHAPSHMELTLVGKPSDKKKTCNQKESSQRKEDHETLRKKVLPTVGAWEFERDDDEYINFLELFLSYVLERDLCSSDPGIPFLTSFSGHLREHELNSLLFDMHTSLKRRQSKTRSESVYRAGSCFAVIPESHECEKLFSLNSTCAQNVESQVLSASELVNQSASTSDNLLPEVTGNERKAGLFGLKQKPIYRIQDDKREKPLMQRPSNQSFSIPKSIDTGGYRFQAVEYSAASLQEDVPLALENMFRHVGRLVEWMVRWSDRRLLCDSGVTQSSCKYSPVIRVKTSTAAILTSLWLLEQPYCAAYRTKNGIIKVLENHYPESQVAAEEESNANNVDSPVAVAVQAGADERNDQNECYQSIWNRMPAEAENPEVKEIDDEIIPVTHKAEKEFVDVVENHSEVDTFTRDEMDMHISDCEEEPFGSLRGPSAAICMPASKLLLEHSVEEVQCSRGEPLTMNADTKLTEQKGMIEALSYSEHTIPHSLCKDANSETSRMFSHSAQNSERDESSSVLPLLSHGVHATSQTPVLTPQPPHRNEHGVQFPDSSGSVRQMLQEEMFKLVQLQQINFLSLMQIVGPSVANLPDMHRLLQQLQPVHSVESQIPKPRRSSCTEVNSRQKCFANPESMGECSREPGKNSLLDHGGISQPDQDSNGNTQDIPHGSIPLCQLDGQPKMRGQTGTSQSFPPTSCSHTPAGDPGLQLLFPPDAVQRAPQLIPPARTITPGSGFPLLHFQPKHEFKPLSLPLERIPEVPFRPQAQPKEAWGLSDSCQLPLSQRIVHSTSCHLDSSHHNVEAMKKADSLLRDIPKNVNLGQYVGQQYLAPQQDSSVFIKPESVFDVKPGPPETALQNSVGLPLLHLQFKPPYMFSSPSKAASRLPSVPPQSGTEGRKYPQLSLLHSCLPPENMYKKPQLIPLENLMAFKRRQQKQAHDVFEQGDSGHLQLLKVNVEPSKITQGKKRQSRRAERELQEERAQKPRRKQSVSFRPDDSLISNGSEVIMEPKEQLEHCGSQPLEKFDIPFEMLEDDVNTAAGLHFLASVRKKAVGIQDASTNTDPDKEGTSQELDSESGKNQQVVSATSGHEPLTVSQLLIPDIYLNVKVPTEISEKPLSPSSPHLARHTYIDVIDIEADDLLELPASEEPIDENVTKQQSHPPEVPSSAELHCMAASIVNAIPPHAFETQESAGSTLSLISEPAKVTQPCLDGKSRRASTMEVKEPGIPSVISLDRQQDRDLLEPNLQFKEQNTKLDSGEQSLLWTLLQDVHTDCPTPSPAAQKLEHLTAKLQKMDEQLLTVQAIAENIEQDFPAPEVLNLHWEEAGKVHHVELSSGPEIEKPPASKAISISEEVCFQTHEDVEDQNDTEETSETEVSVTENHSSQKTYACPSAGSAICSPVDWSITSPGVNNNNELFESVSEDQLQVTGLTDIADIIDDLITKSGVSSEELGLTKKQARNISRIQQSSGRCPQRTEEERREIKIWMKRKRKERMAEYLNQLAEKRGQERDPFCPRNSPFYMTSRQIRQRQKMKHEKDRLLLSNHYSQRISEAYHLMNELLSDSVQLTAPADQPLPNRPPTAQHYRQQHCSSPRRENPHGQNFLINRPGRGRHISRSSRLQKGKPLEQSKGSSRRQGSNTSCQSLLHTNSRGVAPPKKQVCIEYEREDTVVSPWTLPSEIHRILHDRPKTLLQDISPAEEEEPESSVLVAGMDSVSESTGSILSKLDWRAIEDMVADVEDKNLPVHWASDQ", "length": 3230, "header": "tr|A0A9J7K221-1|A0A9J7K221_CRIGR Computationally mapped isoform of Ciliogenesis and planar polarity effector 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Cplane1 PE=4 SV=1 CANONICAL=A0A9J7FEX1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2211, "start_aa": "Thr", "end_pos": 2211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2211", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2788, "start_aa": "Thr", "end_pos": 2788, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2788", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCW4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCW4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCW4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770827", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770827", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1630, "end_pos": 1632, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1649, "end_pos": 1651, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1697, "end_pos": 1699, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1886, "end_pos": 1888, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2481, "end_pos": 2483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2513, "end_pos": 2515, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2665, "end_pos": 2667, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2878, "end_pos": 2880, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2893, "end_pos": 2895, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2972, "end_pos": 2974, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FD18-1", "uniprot_ac": "A0A9J7FD18", "uniprot_id": "A0A9J7FD18_CRIGR", "mass": { "chemical_mass": 62934.0, "monoisotopic_mass": 62934.0 }, "refseq": { "ac": "XP_003504115", "name": "probable tubulin polyglutamylase TTLL2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504115" }, "gene_names": [ { "name": "Ttll2", "type": "recommended", "evidence": [ { "id": "A0A9J7FD18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ] }, { "name": "Ttll2", "type": "synonym", "evidence": [ { "id": "XP_003504115", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504115" } ] } ], "protein_names": [ { "name": "Probable tubulin polyglutamylase TTLL2", "type": "synonym", "evidence": [ { "id": "A0A9J7FD18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18/entry#names_and_taxonomy" } ] }, { "name": "probable tubulin polyglutamylase TTLL2", "type": "synonym", "evidence": [ { "id": "XP_003504115", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504115" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614028.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504115", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504115" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttll2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18", "locus": {} } ], "crossref": [ { "id": "A0A9J7FD18", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FD18", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751736", "url": "https://www.ncbi.nlm.nih.gov/gene/100751736", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751736", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751736", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GLDAHDC", "url": "https://omabrowser.org/oma/group/GLDAHDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FD18", "url": "https://www.orthodb.org/?gene=A0A9J7FD18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12241", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12241", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12241:SF118", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12241:SF118", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03133", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03133", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504115", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504115", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FD18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTLQSLGGVTANVSNLVLKGHNIRIKPRRMEEEGPRATLKPLVFRVDESTPRVVQSVLLERGWDQFDEQHQDVEDWNLYWRRSSFRMAEHINVKPWQRLNHHPGTITLTRKDCLAKHLAHMRRLYGRSLYEFTPLTFIMPSDYTKFIAEYFKEKQVLGTKPTYWISKPAKLSRGRGIIIFSDIRDLIFNSTYVVQKYICNPLLVGRYKCDLRVYVCVTGFRPLTIYMYREGLVRFATEKFDLRNLEDSYAHLTNSSINKDGASYQKIKEVVGQGCKWTLSRFFSYLRNWDVDDLLLWRKINHMVILTVLAMAPSVPVAYNCFELFGFDILIDDNLKPWLLEVNYSPALSLDCSTDVSVKRSLVHDIIELICLNGLRSEDRKWGRASSGSSRLSFARRQQPELCKSFIQFASRACGNTNPSVRRAVDADPKHTRTSQLREMMNRQHVLLTREATKSKPRLRARHTPRKVLSPKVPLAQSQPHRTKGPVGVLPEAGSTPNDRAGNFVLIFPFNEATFRASRNGLNVKRIIQELQKLMNKRLSSGKN", "length": 545, "header": "tr|A0A9J7FD18-1|A0A9J7FD18_CRIGR Isoform 1 of Probable tubulin polyglutamylase TTLL2 OS=Cricetulus griseus OX=10029 GN=Ttll2 PE=4 SV=1 CANONICAL=A0A9J7FD18-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FD18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18/entry", "sequence": { "sequence": "MNTLQSLGGVTANVSNLVLKGHNIRIKPRRMEEEGPRATLKPLVFRVDESTPRVVQSVLLERGWDQFDEQHQDVEDWNLYWRRSSFRMAEHINVKPWQRLNHHPGTITLTRKDCLAKHLAHMRRLYGRSLYEFTPLTFIMPSDYTKFIAEYFKEKQVLGTKPTYWISKPAKLSRGRGIIIFSDIRDLIFNSTYVVQKYICNPLLVGRYKCDLRVYVCVTGFRPLTIYMYREGLVRFATEKFDLRNLEDSYAHLTNSSINKDGASYQKIKEVVGQGCKWTLSRFFSYLRNWDVDDLLLWRKINHMVILTVLAMAPSVPVAYNCFELFGFDILIDDNLKPWLLEVNYSPALSLDCSTDVSVKRSLVHDIIELICLNGLRSEDRKWGRASSGSSRLSFARRQQPELCKSFIQFASRACGNTNPSVRRAVDADPKHTRTSQLREMMNRQHVLLTREATKSKPRLRARHTPRKVLSPKVPLAQSQPHRTKGPVGVLPEAGSTPNDRAGNFVLIFPFNEATFRASRNGLNVKRIIQELQKLMNKRLSSGKN", "length": 545, "header": "tr|A0A9J7FD18-1|A0A9J7FD18_CRIGR Isoform 1 of Probable tubulin polyglutamylase TTLL2 OS=Cricetulus griseus OX=10029 GN=Ttll2 PE=4 SV=1 CANONICAL=A0A9J7FD18-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751736", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751736", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XNG3-1", "protein_name": "Unc-93 homolog A", "gene_name": "TTLL2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPPASKMEIMADGDASETLKPLVFRLHENAPAIIREVLLERGWTEFDQKEQDDTDWNLYWRNSPFPMTDHHSIKPWQRLNHYPEAVRITRKDYLARHLKRMKGAYGSALYEFSPVAFIMPNDYVKFIAEYSKERQSVGRPSYWICKPVHLSRGRGILIFQDVKDLVYHCTVIVQKYISNPLLISGYKLDLRLYVCVTSFCPLTIYTYEEGLVRFATEKFDLSSLDNVYAHLTNTSINKYGASYKTYKEGIGCGCKWTFSKFRSYLRIFGVDDMLLWQKMNNIVILTLLAITPLPEASNCFELFGFDILIDDKFKPWLLEVNYNPALCLDCSIDDTVKRKLLHDIVELLNYKQVDTHRQNEMSGSKAVRRQVPWRRTGKSTPEEAPGLLSGRKVSTCISASQTPPALQFARGSVNKVSALTRKTARAHPRKTLTSELREKMNMPKASSPVKTEARNKQLPAVHSPLISAQLSRWSPSPEVCNYKLSTRPYFLSDKNQMPTRQVGGFVLIFPFNEAALQASKDGTDVKSIIKEINKLVSKQNSTRQKKAQTV", "length": 550 }, "evidence": [ { "id": "A0A9J7FD18", "url": "https://omabrowser.org/oma/group/A0A9J7FD18/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4Q9E4-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "Ttll2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDGLQSLGDVTAEIFGLPLEGHSVQESKPLKTEDEPQGAPLKPLVFRVDESTPGLVQSVLLERGWDKFDEQRQDVEDWNLYWRSSSFRRAEYVNVKPWQRLNHHPGMTNLTRKDCLAKHLARMRSRYGESLYEFTPLTFIMPTDYTKFVAKYFKEKQDLGTKPSYWICKPAELSRGRGIIIFSDIRDLMFKGTYVVQKYICNPLLVGRYKCDLRIYVCITGFKPLTIYMYQEGLVRFATEKFDLRNLEDYYSHLTNSSINKLGASYQKIKEVVGQGCKWTLSRFFSYLRNWDVDDLLLRQKISHMVILTVLAMAPSVPVTYNCFELFGFDILIDDNLKPWLLEVNYNPALTLDCSTDESVKRSLVHDVIELLYLNGLRSEEKKCGRTSPGNSVVSLARSHHHEFCATPNSSSYASLIEFTTGSKSDPAVQNICPKHTRTSQLREMMSRRDRLLTKEAAKSKPRHKAWHLPRKMVFPYASQSQPHKMKGPAGDLPEAGSTPNDHAGNFVLIFPFNKATFRASRNGLNVKRIIQELQKLMNK", "length": 540 }, "evidence": [ { "id": "A0A9J7FD18", "url": "https://omabrowser.org/oma/group/A0A9J7FD18/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZF82-1", "protein_name": "Tubulin tyrosine ligase like 2", "gene_name": "Ttll2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMNGLQTLGDVTAEIFRLSPEGNTVQKRQRLRMEDEAPGAALKPLVFRVDESTPGVVQSVLLERGWDKFDEQCQDVEDWNLYWRSSSFRMAEYVNIKPWQRLNHHPGTTSLTRKDCLAKHLAHMRRLYGESIYEFTPLTFIMPSDYTKFVAKYFKEKQDLGTKPSYWICKPAKLSQGRGIIIFSDIRDLMFKDAYVVQKYICNPLLVGRYKCDLRIYVCVTGFKPLTIYMYQEGLVRFATEKFDLSNLEDYYSHLTNSSINKLGASYEKIKEVVGQGCKWTLSRFFSYLRNWDVDDLLLRRKINHMVILTVLAMAPSVPVANNCFELFGFDILIDDNLKPWLLEVNYSPALSLECSTDVSVKRSLVHDIIELLYLNGLRSEEKKCGRTSQGNAMVSQARRSQQKLCAAPAPPSYASLIQFATCSKRSPAAQHMCPKHTRTSQLREMLCRQNKLLTREAAKSKPRLKAWHSPRKMLSLCASQSLPRKTKGPTGILPEAGNTPNNHAGNFVLIFPFNKATFSASRNGLNVKRIIQELQKLMNK", "length": 541 }, "evidence": [ { "id": "A0A9J7FD18", "url": "https://omabrowser.org/oma/group/A0A9J7FD18/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BWV7-1", "protein_name": "Probable tubulin polyglutamylase TTLL2", "gene_name": "TTLL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGRDLCSSTQSQALGSLRTTTPAFTLNIPSEANHTEQPPAGLGARLQEAGVSIPPRRGRPTPTLEKKKKPHLMAEDEPSGALLKPLVFRVDETTPAVVQSVLLERGWNKFDKQEQNAEDWNLYWRTSSFRMTEHNSVKPWQQLNHHPGTTKLTRKDCLAKHLKHMRRMYGTSLYQFIPLTFVMPNDYTKFVAEYFQERQMLGTKHSYWICKPAELSRGRGILIFSDFKDFIFDDMYIVQKYISNPLLIGRYKCDLRIYVCVTGFKPLTIYVYQEGLVRFATEKFDLSNLQNNYAHLTNSSINKSGASYEKIKEVIGHGCKWTLSRFFSYLRSWDVDDLLLWKKIHRMVILTILAIAPSVPFAANCFELFGFDILIDDNLKPWLLEVNYSPALTLDCSTDVLVKRKLVHDIIDLIYLNGLRNEGREASNATHGNSNIDAAKSDRGGLDAPDCLPYDSLSFTSRMYNEDDSVVEKAVSVRPEAAPASQLEGEMSGQDFHLSTREMPQSKPKLRSRHTPHKTLMPYASLFQSHSCKTKTSPCVLSDRGKAPDPQAGNFVLVFPFNEATLGASRNGLNVKRIIQELQKLMNKQHS", "length": 592 }, "evidence": [ { "id": "A0A9J7FD18", "url": "https://omabrowser.org/oma/group/A0A9J7FD18/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "tubulin-glutamic acid ligase activity", "id": "GO:0070740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070740", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "pmid": "" }, { "name": "tubulin binding", "id": "GO:0015631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015631", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 190, "end_pos": 192 }, { "start_pos": 255, "end_pos": 257 }, { "start_pos": 344, "end_pos": 346 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FD23-1", "uniprot_ac": "A0A9J7FD23", "uniprot_id": "A0A9J7FD23_CRIGR", "mass": { "chemical_mass": 180911.0, "monoisotopic_mass": 180911.0 }, "refseq": { "ac": "XP_003503337", "name": "maestro heat-like repeat-containing protein family member 2B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503337" }, "gene_names": [ { "name": "Mroh2b", "type": "recommended", "evidence": [ { "id": "A0A9J7FD23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23" } ] }, { "name": "Mroh2b", "type": "synonym", "evidence": [ { "id": "XP_003503337", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503337" } ] } ], "protein_names": [ { "name": "Maestro heat-like repeat-containing protein family member 2B", "type": "synonym", "evidence": [ { "id": "A0A9J7FD23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23/entry#names_and_taxonomy" } ] }, { "name": "maestro heat-like repeat-containing protein family member 2B", "type": "synonym", "evidence": [ { "id": "XP_003503337", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503337" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613957.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503337", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503337" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mroh2b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23", "locus": {} } ], "crossref": [ { "id": "100767277", "url": "https://www.ncbi.nlm.nih.gov/gene/100767277", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045206", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055406", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055406", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767277", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767277", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HREDFCE", "url": "https://omabrowser.org/oma/group/HREDFCE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FD23", "url": "https://www.orthodb.org/?gene=A0A9J7FD23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23120:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503337", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503337", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FD23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FD23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEYTDMFGDINLTIGMLSKEDNISKEDIYSHLASFIQNTDILDDAIVQKLIYYTSKDMRDEDIPREIRMLAGEVLVSLAAHDFNSVMYEVQSNFRILELPNEFVVLALAELATSYVSQSIPFMMMTLLTMQTMLRLVEDENMKQTFCIALEKFSKAIYKYVNHWKEFPYPKLDAHRLSDKIFMLFRYIMEKWAPQASPMNTLTIVKVHGPTVSLLLHREDFHEYALSQVPWLLTQYKDKESDFYITQSLKQILTAAVLYDIVLPKNLRRSTLTSLLHQVCRLPEPPIKENKIEASSCFLILAHANPADLLEFLDEHIRSNNEAVRTGILTLLRSTIYVEEPRFRNHTTSIENMVKVVMSDLNVKVRKSTLLLIQTMCERGYIEAREGWPLIDYIFSQFAMSNRNLEKAMKSNSQDEEKEEKFVQETSLEVLKSLDPLMIGMPQVLWPRILTFVVPEEYTGTLGYLFNIIRILVMAEEKKKRDIQESTALVISTGAVKLPSPQQLLARLLVIAVLASLGQLCGASAIGLLKIVPEIIHPKLVDLWKTRLPELLKPLEGNNSSIVLWETMLLQLLKESLWKISDEAWTSQLSRDFIRQMDSYSNSSIEKKFLWKALGTTLASCQDTDFVSSQIREFLVSPSQLGDQRQGTTSILGYCSEKHLDTVLKVLKTFQEKEKFFINRCKGIFSGKKSLSKIDLILIYGALALHAPKQELLARLDEDIMSQILLLYNQCSQVLGVSVVNKDMDLQMSFTRSITEVGIAIQDAEDFKFQFTYKEMLIGFMLDSIKEEPLNSLASPVRWKALIAIRYLSKLKPQLSLNDHLNILEENIRRLLPLPPLEKLKSGGETDKDKERIEFLHERSMDALGKLLRSMIWDDTDAQNCEEMFNLLRMWLVSQKEWERERAFQITSKILTNDIEAPKNFRIGSLLGLLAPHSCDTLPTIRQAATSSTIGLFCAKGICLEVDRLQGLQEGLESNDEQVQIKISSKIAKIVCKFIPNEEIQAFLEETLDGLETLNPMCTKACGIWMIAALKEHGAVLEDQLLEILNTTYHHMPVLRQKEESFQFILEAISQIASFHMDSVVVNLLQKPLPFDRDTKTLWKSLAENPASRGKLMRALIKKLDARLEDDIAGIDAISVACAMYEVILTGTHVTHLYPELFTLLLKLVSCSLGQKMPTSTLSQRRRVMQLGERQQTPDPCRLSTAALKCLQAQAMKEGLAKESDEGDNLWNLLSNPDTHHIGVCALARSMAVWQHGVILDIMQHLFSSLTSSSENYRITGTAFFSELMKEPILWKHGNLRDVLVFMDQSAWDSNAVLRQMAIRGLGNTAHGAPHKVKKHKQIMLESIIRGLYHLARTEVVCESLKALKKILELLTERDISFYFKEIVLQTRTFFEDEQDDVRLTAISLFEDLASLTGRRWKVFFAEEVKKSMISFLLHLWDPNPKIGAACRDVLVICIPFLGLQELYGILEHLLEQDLPRARDFYRQFCMKLAKKNQEILWILHTHSFTFFTSSWEMIRSAAVKLTDAIILHLTSQYVELLDREQLTMRLQALRQDPCISVQRASEAALQTLLRRCKETSIPL", "length": 1581, "header": "tr|A0A9J7FD23-1|A0A9J7FD23_CRIGR Isoform 1 of Maestro heat-like repeat-containing protein family member 2B OS=Cricetulus griseus OX=10029 GN=Mroh2b PE=4 SV=1 CANONICAL=A0A9J7FD23-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FD23-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23/entry", "sequence": { "sequence": "MEEYTDMFGDINLTIGMLSKEDNISKEDIYSHLASFIQNTDILDDAIVQKLIYYTSKDMRDEDIPREIRMLAGEVLVSLAAHDFNSVMYEVQSNFRILELPNEFVVLALAELATSYVSQSIPFMMMTLLTMQTMLRLVEDENMKQTFCIALEKFSKAIYKYVNHWKEFPYPKLDAHRLSDKIFMLFRYIMEKWAPQASPMNTLTIVKVHGPTVSLLLHREDFHEYALSQVPWLLTQYKDKESDFYITQSLKQILTAAVLYDIVLPKNLRRSTLTSLLHQVCRLPEPPIKENKIEASSCFLILAHANPADLLEFLDEHIRSNNEAVRTGILTLLRSTIYVEEPRFRNHTTSIENMVKVVMSDLNVKVRKSTLLLIQTMCERGYIEAREGWPLIDYIFSQFAMSNRNLEKAMKSNSQDEEKEEKFVQETSLEVLKSLDPLMIGMPQVLWPRILTFVVPEEYTGTLGYLFNIIRILVMAEEKKKRDIQESTALVISTGAVKLPSPQQLLARLLVIAVLASLGQLCGASAIGLLKIVPEIIHPKLVDLWKTRLPELLKPLEGNNSSIVLWETMLLQLLKESLWKISDEAWTSQLSRDFIRQMDSYSNSSIEKKFLWKALGTTLASCQDTDFVSSQIREFLVSPSQLGDQRQGTTSILGYCSEKHLDTVLKVLKTFQEKEKFFINRCKGIFSGKKSLSKIDLILIYGALALHAPKQELLARLDEDIMSQILLLYNQCSQVLGVSVVNKDMDLQMSFTRSITEVGIAIQDAEDFKFQFTYKEMLIGFMLDSIKEEPLNSLASPVRWKALIAIRYLSKLKPQLSLNDHLNILEENIRRLLPLPPLEKLKSGGETDKDKERIEFLHERSMDALGKLLRSMIWDDTDAQNCEEMFNLLRMWLVSQKEWERERAFQITSKILTNDIEAPKNFRIGSLLGLLAPHSCDTLPTIRQAATSSTIGLFCAKGICLEVDRLQGLQEGLESNDEQVQIKISSKIAKIVCKFIPNEEIQAFLEETLDGLETLNPMCTKACGIWMIAALKEHGAVLEDQLLEILNTTYHHMPVLRQKEESFQFILEAISQIASFHMDSVVVNLLQKPLPFDRDTKTLWKSLAENPASRGKLMRALIKKLDARLEDDIAGIDAISVACAMYEVILTGTHVTHLYPELFTLLLKLVSCSLGQKMPTSTLSQRRRVMQLGERQQTPDPCRLSTAALKCLQAQAMKEGLAKESDEGDNLWNLLSNPDTHHIGVCALARSMAVWQHGVILDIMQHLFSSLTSSSENYRITGTAFFSELMKEPILWKHGNLRDVLVFMDQSAWDSNAVLRQMAIRGLGNTAHGAPHKVKKHKQIMLESIIRGLYHLARTEVVCESLKALKKILELLTERDISFYFKEIVLQTRTFFEDEQDDVRLTAISLFEDLASLTGRRWKVFFAEEVKKSMISFLLHLWDPNPKIGAACRDVLVICIPFLGLQELYGILEHLLEQDLPRARDFYRQFCMKLAKKNQEILWILHTHSFTFFTSSWEMIRSAAVKLTDAIILHLTSQYVELLDREQLTMRLQALRQDPCISVQRASEAALQTLLRRCKETSIPL", "length": 1581, "header": "tr|A0A9J7FD23-1|A0A9J7FD23_CRIGR Isoform 1 of Maestro heat-like repeat-containing protein family member 2B OS=Cricetulus griseus OX=10029 GN=Mroh2b PE=4 SV=1 CANONICAL=A0A9J7FD23-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD23" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767277", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767277", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8J8YRC8-1", "protein_name": "Maestro heat-like repeat family member 2B", "gene_name": "Mroh2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEYSEMFGDINLTIGMLSKEDNISKEEIYGHLTSFIQNADILDDAIVQRLIYYTSKDMRDEEMPREVRMLAGEVLVSLAAHDFNSVMYEVQSNFRILELPNEFVVLALAELATSYVSQSIPFMMMTLLTMQTMLRLVEDESMRQTFCIALEKFSKSIYKYVNHWKDFPYPKLDANRLSDKISMLFRYIMEKWAPQASPMHTLAIIKALGPTVSLMLHREDFCEFALSQVSWLLVQYQDKESDFYITQSLKQVLTATVLYDTLLPKNLRRSILTSLLHQICKVPEPPIKENKLEASSCFLILAHANPADLLDFFDEQIRSTNEAIRAGILTLLRSTINAEEPKFRNHTTSIEKTVKLVMNDLSIKVRKSTLLLIQTMCEKGYVEAREGWPLIDYIFSQFAMSNRNLEKAIKSNSQEDENGEKSVQETSLEVLKSLDPLVIGMPQVLWPRILTYVVPEEYTGTLDYLFNIIRILIMAEEKKRDKQESTALVISTGAVKLPSPQQLLARLLVISMLASLGQLCGAGAIGLLKIMPEIIHPKLVEMWKSRMPVLLEPLEGNNASIVLWETMLLQLLKESLWKISDVAWTSQLSRDFSLQMGSYSNSSMEKKFLWKALGTTLASCQDRDFVSSQINEFLVTPSLLGDQREGTTSILGFCAENHLDIVLKVLKTFQDKEKFFVNRCKSIFSGKKSLTKTDLILIYGAVALHAPKQQLLARLDQDIIGQILLLYGQCSQVLGMSVINKDMDLQMSFTRSITEVGIAVQDAEDQKFQFTYKKMLIGFMLDLIKDEPLNTLASPIRWKVLIAIRYLSKLKPPLSLNDHLNILEENIRRLLPLPPLAKLKSEGETDKDKEHIKFLYERSMDALGKLLRSMIWDDIDAQNCEEMFNLLRMWLVSQKEWERERAFQVTSKILTKDVEAPQNFRIGSILGLLAPHSCDTLATIRQAATSSIIGLLCAKGICQEADRLQGLQEGLDSQDEQVQIRISSKIAKIVCKFIPNEDIQAFLEETLDGLETLNPMCTRACGIWMIAALKEHGALLEDQLLEILSTIYHHMPVLRQKEESFQFMLEAISQIASFHMDAVVNSLLQKPLPFDRDTKTLWKALAENPASSSKLMRALIRKLEARLEDDIAGTDAISVACAMYEVILTGARITHLYPELFTLLLKLVSCSLGQKMPTSTLSQRRRVMQLGERQQFPDPCRLSTATLKCLQTQAMKEGLAKESDEGDNLWTLLSNPDTHHIGVCALARSMAVWQHGVILDIMEHLLSSLTSSSENYRITGMAFFSELMKEPILWKHGNLRDVLIFMDQNTRDSNAILRQMAIRGLGNTACGAPHKVRKHKQIMLECIIRGLYHLARTEVVCESLKALKKILELLTERDISLYFKEIVLQTRTFFEDEQDDVRLTSIFLFEDLASLTGRKWKIFFAEEVKKSMISFLLHLWDPNPKIGAACRDVLVICIPFLGLQELYGILDHLLEPDLPRARDFYRQFCMKLAKKNQEILWILHTHSFTFFTSNWEMIRSAAVKLTDAIILHLTNRYVELLDREQLTMRLQALRQDPCISVQRAAEATLQTLLRRCKEISIPL", "length": 1580 }, "evidence": [ { "id": "A0A9J7FD23", "url": "https://omabrowser.org/oma/group/A0A9J7FD23/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7M6Y6-1", "protein_name": "Maestro heat-like repeat-containing protein family member 2B", "gene_name": "Mroh2b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEYGDMFGDINLTIGMLSKEDNISKEDIYCHLTSFIQNTDIMDDAIVQRLIYYTSKDMRDEEIPRELRMLAGEVLVSLAAHDFNSVMYEVQSNFRILELPNEFVVLALAELATSYVSQSIPFMMMTLLTMQTMLRLVEDENMRQTFCIALENFSKSIYKYVNHWKDFPYPKLDANRLSDKIFMLFRYIMEKWAPQASPMHALAIIKAHGPTVSLLLHREDFCEFALSQISWLLLQYRDKENDFYITQSLKQILTAAVLYDIALPKNLRRSVLSSLLHQICKVPEPPIKENKLEASSCFLILAHANPVDLLDFFDEQIRSTNEAVRTGILTLLRSTINAEEPKFRNHTTSIEKTVKLVMGDLSVKVRKSTLLLIQTMCEKGYIEAREGWPLIDYIFSQFAMSNRNLENPIKSNSQEDENGEKSVQETSLEVLKSLDPLVIGMPQVLWPRILTYVVPKEYTGTLDYLFNIIRILIMAEEKKKRDIQESTALVVSTGAVKLPSPQQLLARLLVISILASLGQLCGAGAIGLLKIMPEIIHPKLAEMWKTRMPALLQPLEGSNASIVLWETMLLQLLKESLWKISDVAWTSQLSRDFSLQMGSYSNSSMEKKFLWKALGTTLASCQDKDFVSSQINEFLVTPSLLGDHRQGTTSILGFCAENHLDIVLNVLKTFQDKEKFFVNRCKGIFSGKKSLTKTDLILIYGAVALHAPKQQLLARLDQDIMGQILLLYGQCCQILGVSVINKDMDLQMSFTRSITEVGIAVQDAEDQKFQFTYKEMLIGSMLDLIKDEPLNTLASPVRWKVLIAIRYLSKLKPALSLNDHLNILEENIRRLLPLPPLEKLKSQGETDKDRERIEFLYERSMDALGKLLRSMIWDNTDAQNCEEMFNLLRMWLVSQKQWERERAFQVTSKVLTKDVEAPQNFRIGSLLGLLAPHSCDTLPTIRQAATSSTIGLLCAKGICQEVDRLQGLQEGLDSEDEQVQIKISSKIAKIVCKFIPSEEIQVFLEETLDGLETLDPLCTKACGIWMIAALKEHGALLEDQLLEILSTIYHHMPVLRQKEESFQFMLEAISQIASFHMDAVVNNLLQKPLPFDRDTKTLWKALAENPASSGKLMRALIKKLVARLEDDIAGTEAISVACAIYEVILTGAHITHLYPELFTLLLKLVSCSLGQKMPMSTLSQRRRVMQLGERQRFPDPCRLSTATLKCLQAQAMREGLAKESDEGDNLWTLLSNPDTHHIGVCALARSMAVWQHGVILDIMEHLLSSLTSSSENYRITGMAFFSELMKEPILWKHGNLRDVLIFMDQNARDSNAILRQMAIRGLGNTACGAPHKVRKYKQMMLECIIRGLYHLARTEVVCESLKALKKILELLTERDINFYFKEIVLQTRTFFEDEQDDVRLTAISLFEDLATLTGRRWKIFFAEEVKKSMISFLLHLWDPNPKIGAACRDVLVICIPFLGLQELYGLLDHLLERDLPRARDFYRQLCMKLSKKNQEILWILHTHSFTFFTSSWEMIRSAAVKLTDAIILHLTKRYVELLDREQLTMRLQALRQDPCISVQRAAEATLQTLLRRCKEISIPL", "length": 1581 }, "evidence": [ { "id": "A0A9J7FD23", "url": "https://omabrowser.org/oma/group/A0A9J7FD23/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7Z745-1", "protein_name": "Maestro heat-like repeat-containing protein family member 2B", "gene_name": "MROH2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTLSTEESIEMFGDINLTLGMLNKEDIVNKEDIYSHLTSVIQNTDILDDAIVQRLIYYASKDMRDNNMLREIRMLAGEVLVSLAAHDFNSVMYEVQSNFRILELPDEFVVLALAELATSYVSQSIPFMMMTLLTMQTMLRLAEDERMKGTFCIALEKFSKAIYKYVNHWRDFPYPRLDANRLSDKIFMLFWYIMEKWAPLASPMQTLSIVKAHGPTVSLLLHREDFRGYALGQVPWLLNQYKDKEIDFHVTQSLKQILTAAVLYDIGLPRSLRRSIFINLLQQICRAPEPPVKENEMKASSCFLILAHSNPGELMEFFDEQVRSNNEAIRVGILTLLRLAVNADEPRLRDHIISIERTVKIVMGDLSTKVRNSVLLLIQTMCEKSYIEAREGWPLIDYVFSQFATLNRNLEKPVKTNFHENEKEEESVRETSLEVLKTLDPLVIGMPQVLWPRILTFVVPAEYTEALEPLFSIIRILIMAEEKKQHSAKESTALVVSTGAVKLPSPQQLLARLLVISMPASLGELRGAGAIGLLKILPEIIHPKLVDLWKTRLPELLQPLEGKNISTVLWETMLLQLLKESLWKISDVAWTIQLTQDFKQQMGSYSNNSTEKKFLWKALGTTLACCQDSDFVNSQIKEFLTAPNQLGDQRQGITSILGYCAENHLDIVLKVLKTFQNQEKFFMNRCKSLFSGKKSLTKTDVMVIYGAVALHAPKKQLLSRLNQDIISQVLSLHGQCSQVLGMSVMNKDMDLQMSFTRSITEIGIAVQDAEDQGFQFSYKEMLIGYMLDFIRDEPLDSLASPIRWKALIAIRYLSKLKPQLSLQDHLNILEENIRRLLPLPPLENLKSEGQTDKDKEHIQFLYERSMDALGKLLKTMMWDNVNAEDCQEMFNLLQMWLVSQKEWERERAFQITAKVLTNDIEAPENFKIGSLLGLLAPHSCDTLPTIRQAAASSTIGLFYIKGIHLEVERLQGLQEGLESDDVQVQIKISSKIAKIVSKFIPNEEILMFLEEMLDGLESLNPTCTKACGIWMITVLKQQGAALEDQLLEILGTIYHHMPVLRQKEESFQFILEAISQIASFHMDTVVVNLLQKPLPFDRDTKTLWKALAEKPASSGKLLQALIDKLETELEDDIARVEAISVACAMYEVISMGTSVTGLYPELFTLLLKLVSCTLGQKMLTCPWSHRRHVMQQGEQQQIPDPCRLSTATLKCLQAQAMREGLAKESDEGDNLWTLLSSPSTHHIGVCSLARSMAVWQHGVILDIMEQLLSSLTSSSENYRITGAAFFSELMKEPILWKHGNLRNVLILMDQSAWDSNATLRQMAIRGLGNTASGAPHKVKKHKQLMLESIIRGLYHLARTEVVCESLKALKKILELLTDRDVSFYFKEIVLQTRTFFEDEQDDVRLTAIFLFEDLAPLTGRRWKIFFAEEIKKSLISFLLHLWDPNPKIGVACRDVLMVCIPFLGLQELYGVLDRLLDQDLPRARDFYRQFCVKLAKKNQEILWILHTHSFTFFTSTWEVIRSAAVKLTDAVVLNLTSQYVELLDREQLTTRLQALRQDPCISVQRAAEAALQTLLRRCKETSIPL", 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254271", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254271" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FD35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD35" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FD35", "locus": {} } ], "crossref": [ { "id": "A0A9J7FD35", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FD35", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774349", "url": "https://www.ncbi.nlm.nih.gov/gene/100774349", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", 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:: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027255750.1. 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"MAEAVKPRRAKAKSSRTKGKEKKKYEAPQTSDEVSLPETSREQEIPSLACELKGDDLQVSTDSQLHKDVSGWNESEMFDIPLTSLTVGDEGSLTGDTEDLKGRGEIRAPDGDDEIKLKVDPGDNVRTKVEPSKNFTEVEESLLIPHGPSESTPQADFPSTQGMGSLQVRETETRKEDEEAGGCSKVLQNASLHSSYKAKEVSQPPRVKKLYPELPAEIAEVPDLVVVKPLLCSERLYPELPSQPELVPFTKEQLKLLEPGSWLENVESYVEEFDSIAHQDRHEFYELLLNYSRCRKQLLLAEAELLTLMSDCQNAKSRLWTFKDEQIAVQGICADQVKVYGHHHYQRVEMNENVLGELKKLFDAKSEHLHQTLALHSYTSVLSRLQVESYIYTLLNSSAVLRSLAVYQQDQVSKLTESIPSDVCQLKECISVLFMFTRRMSEDAQFQEDILLWLQKLVSVLQRVGCPGDHFFLLNHILRCPAGVSKWAVPFIQIKVLNNPSGVFHFMQSLALLMSPVKNRAEYMCHMKPSEWKPSSSGPASGNWTLVDEGGEEDEDPETSWILLNEDDLVILLSQFPFHELFQHLLGFKAKGDYLPETTRPQEMMKIFAFANSLVELLAVGLETFNRARYRQFVKRIGYLIRMTLGYVSDHWAQYVSHSTGMGLTLQPYSVEKLQIEFDELFLRAVLYVLKAKRLGIWLFMSEMPFGTLSVPMLWKLFYLMHQAESGNLQHLCTSLQPAECKRQLQDPEHFANLEKYLSSMNSSEEICLLTTFAQMARARRTNVDEDFIKMIVLEIYEVSYVTLSTRETFSKVGRELLGAITAVHPEIISVLLDRVQETIDQVGMVSLYLFKELPLYLWQPSASEIAVIRDWLLNYSLTAVKNKLACVILEGLNWGFAEQGNLHLDQALHTEVALLVLEAYQKHLSQKPYAGLLSESMKQVSYLASIVRYGETPETSFNQWVWNLILRLKLHKNDFGTQQNCPVVPFSSTVPDMTESPMFHPLLKAVKSGMPIGCYLALAMTAVGHSIEKFCSEGIPLLGILVQTRHLRAVVHVLDKILPMFYPCQYYLLKNEQFMSNLLLFLHLDSGVPQGVTQQVTHKVAQHLTGASYGDNVKLLNSMIQAHVCVSTQPNEVGPVAVLEFWVQALISQHLWYREQPILFLMDHLCKTAFHMMQEDCVQKLLYQQHKNALGYHCDRSLLSSLVSWIVAGNITPSFVEGLSMSTQVWFVWTVLNMESIFEEDSQLRRVVEGELVINAFTPDQALKKAQAQLKLPIVPSLQRMMIYRWAHQALATPSDHPLLPLIWQKFFLLYLHRPGPQYGLPVDGCIGRRFFQSPSHINLLKDMKRRLTEVADFHYAASKALRVPAEGSEGTAERQAGAHGYLTSPELHRELVRLFNVFILWLEDENFQKGDTYIPSLPKHYDTHRLAKVMQNQQDLWMEYLNMERIHHEFQETVGQWTETKLESHSLSCSSSAQLDFTDPLLAKERVLSNLRKHEAPQPPLVLHLVRPPVPLISSAVLLSQKDTTQLMCTDLNLLQQRARTAALRESQQVALDGELLETMPKQYVNREEQTTLHLECRGSGGKKCQGAAVVTVQFEGMHKNDAISQQIHILQKEVRQFQAEAAQPPALNVVEAAVHAENLITALVNSYKLQPTPGAQKIGISLFFTVVDYVSDETQRHPPTRQFFTSCIEILGQVFISGTKSECRKVLQTILKNRRLCSLLSPFFTPNAAPAEFIQLYEKVVKFLSEDNSDMIFMLLTKFDVKQWLMATKPPLSDRTRLLESIHLALTAWGLEPDEDILMPFNLFCKHWTHLLLYQFPDQYNDVLRLLVQSSAEQLLSPECWKATLRALGCCTPSSQQGAASADNAVLHSASDALLSDKQVMETIHWLSDFFYKLRLSKMDFKSFGLFSKWSPYMGDVKTFLEYLVKRLIDLEIASLTQDSTASSKEVLRSLHSQIVQLFKPWILVLEDSESSQQRHYPWLESDAVVASSIVQLFTDCISSLHRSFKDKLLPGDEGALRLHLLHYCEACTAPKMPECILYTFHSAYQKLEWKDLHPDQRLMEAFFKVERGSPKSCFLFLGSVLCRVNWVSVLSDAWNPSPLPETQSMVVCLLFMMILLAKEAQLVDQTDSPLLSLLGQTSSLSWHLVDLVSYQSVLGYFSSHYPPSVMLAKDSSAEHIVKLLKVSAGLSVPADGQKHRDIVPKCQAFTRQMVQFLSTLEQSGKVTFSVLEQEIAKLLDDVIAFNPPDMDSQARHMALSSLFTEVLMMMNNATIPTAEFLGGSIRTWIGQKVHGLVVLPLLTAACQSLASVRHMAETTEACIAAYFKEGSLNQNLGWGPILVSLQVPELTIQEFLQECLALGSCLTLYVYLLQCLNSEQTLRNEMKVLLILNKWLEQVYPSSAQEEAKLFLWWHQILQLSLVQMEQNDSVLTESIIRILLMLQSRQSLMAEERLSSGILGAIGLGRKSPLSNRFRVIARGMAAFLLVQVPAEDQVRLKPSSELHLTPKAQQVLTALESMTLSKQYVEYQDQILQAVQFIKHPGHCLQNGKSLLALLVNCLYPEVHYLDNIR", "length": 2572, "header": "tr|A0A9J7FDE4-1|A0A9J7FDE4_CRIGR Isoform 1 of Ectopic P granules protein 5 homolog OS=Cricetulus griseus OX=10029 GN=Epg5 PE=3 SV=1 CANONICAL=A0A9J7FDE4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDE4/entry", "sequence": { "sequence": "MAEAVKPRRAKAKSSRTKGKEKKKYEAPQTSDEVSLPETSREQEIPSLACELKGDDLQVSTDSQLHKDVSGWNESEMFDIPLTSLTVGDEGSLTGDTEDLKGRGEIRAPDGDDEIKLKVDPGDNVRTKVEPSKNFTEVEESLLIPHGPSESTPQADFPSTQGMGSLQVRETETRKEDEEAGGCSKVLQNASLHSSYKAKEVSQPPRVKKLYPELPAEIAEVPDLVVVKPLLCSERLYPELPSQPELVPFTKEQLKLLEPGSWLENVESYVEEFDSIAHQDRHEFYELLLNYSRCRKQLLLAEAELLTLMSDCQNAKSRLWTFKDEQIAVQGICADQVKVYGHHHYQRVEMNENVLGELKKLFDAKSEHLHQTLALHSYTSVLSRLQVESYIYTLLNSSAVLRSLAVYQQDQVSKLTESIPSDVCQLKECISVLFMFTRRMSEDAQFQEDILLWLQKLVSVLQRVGCPGDHFFLLNHILRCPAGVSKWAVPFIQIKVLNNPSGVFHFMQSLALLMSPVKNRAEYMCHMKPSEWKPSSSGPASGNWTLVDEGGEEDEDPETSWILLNEDDLVILLSQFPFHELFQHLLGFKAKGDYLPETTRPQEMMKIFAFANSLVELLAVGLETFNRARYRQFVKRIGYLIRMTLGYVSDHWAQYVSHSTGMGLTLQPYSVEKLQIEFDELFLRAVLYVLKAKRLGIWLFMSEMPFGTLSVPMLWKLFYLMHQAESGNLQHLCTSLQPAECKRQLQDPEHFANLEKYLSSMNSSEEICLLTTFAQMARARRTNVDEDFIKMIVLEIYEVSYVTLSTRETFSKVGRELLGAITAVHPEIISVLLDRVQETIDQVGMVSLYLFKELPLYLWQPSASEIAVIRDWLLNYSLTAVKNKLACVILEGLNWGFAEQGNLHLDQALHTEVALLVLEAYQKHLSQKPYAGLLSESMKQVSYLASIVRYGETPETSFNQWVWNLILRLKLHKNDFGTQQNCPVVPFSSTVPDMTESPMFHPLLKAVKSGMPIGCYLALAMTAVGHSIEKFCSEGIPLLGILVQTRHLRAVVHVLDKILPMFYPCQYYLLKNEQFMSNLLLFLHLDSGVPQGVTQQVTHKVAQHLTGASYGDNVKLLNSMIQAHVCVSTQPNEVGPVAVLEFWVQALISQHLWYREQPILFLMDHLCKTAFHMMQEDCVQKLLYQQHKNALGYHCDRSLLSSLVSWIVAGNITPSFVEGLSMSTQVWFVWTVLNMESIFEEDSQLRRVVEGELVINAFTPDQALKKAQAQLKLPIVPSLQRMMIYRWAHQALATPSDHPLLPLIWQKFFLLYLHRPGPQYGLPVDGCIGRRFFQSPSHINLLKDMKRRLTEVADFHYAASKALRVPAEGSEGTAERQAGAHGYLTSPELHRELVRLFNVFILWLEDENFQKGDTYIPSLPKHYDTHRLAKVMQNQQDLWMEYLNMERIHHEFQETVGQWTETKLESHSLSCSSSAQLDFTDPLLAKERVLSNLRKHEAPQPPLVLHLVRPPVPLISSAVLLSQKDTTQLMCTDLNLLQQRARTAALRESQQVALDGELLETMPKQYVNREEQTTLHLECRGSGGKKCQGAAVVTVQFEGMHKNDAISQQIHILQKEVRQFQAEAAQPPALNVVEAAVHAENLITALVNSYKLQPTPGAQKIGISLFFTVVDYVSDETQRHPPTRQFFTSCIEILGQVFISGTKSECRKVLQTILKNRRLCSLLSPFFTPNAAPAEFIQLYEKVVKFLSEDNSDMIFMLLTKFDVKQWLMATKPPLSDRTRLLESIHLALTAWGLEPDEDILMPFNLFCKHWTHLLLYQFPDQYNDVLRLLVQSSAEQLLSPECWKATLRALGCCTPSSQQGAASADNAVLHSASDALLSDKQVMETIHWLSDFFYKLRLSKMDFKSFGLFSKWSPYMGDVKTFLEYLVKRLIDLEIASLTQDSTASSKEVLRSLHSQIVQLFKPWILVLEDSESSQQRHYPWLESDAVVASSIVQLFTDCISSLHRSFKDKLLPGDEGALRLHLLHYCEACTAPKMPECILYTFHSAYQKLEWKDLHPDQRLMEAFFKVERGSPKSCFLFLGSVLCRVNWVSVLSDAWNPSPLPETQSMVVCLLFMMILLAKEAQLVDQTDSPLLSLLGQTSSLSWHLVDLVSYQSVLGYFSSHYPPSVMLAKDSSAEHIVKLLKVSAGLSVPADGQKHRDIVPKCQAFTRQMVQFLSTLEQSGKVTFSVLEQEIAKLLDDVIAFNPPDMDSQARHMALSSLFTEVLMMMNNATIPTAEFLGGSIRTWIGQKVHGLVVLPLLTAACQSLASVRHMAETTEACIAAYFKEGSLNQNLGWGPILVSLQVPELTIQEFLQECLALGSCLTLYVYLLQCLNSEQTLRNEMKVLLILNKWLEQVYPSSAQEEAKLFLWWHQILQLSLVQMEQNDSVLTESIIRILLMLQSRQSLMAEERLSSGILGAIGLGRKSPLSNRFRVIARGMAAFLLVQVPAEDQVRLKPSSELHLTPKAQQVLTALESMTLSKQYVEYQDQILQAVQFIKHPGHCLQNGKSLLALLVNCLYPEVHYLDNIR", "length": 2572, "header": "tr|A0A9J7FDE4-1|A0A9J7FDE4_CRIGR Isoform 1 of Ectopic P granules protein 5 homolog OS=Cricetulus griseus OX=10029 GN=Epg5 PE=3 SV=1 CANONICAL=A0A9J7FDE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GSD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSD3/entry", "sequence": { "sequence": "MAEAVKPRRAKAKSSRTKGKEKKKYEAPQTSDEVSLPETSREQEIPSLACELKGDDLQVSTDSQLHKDVSGWNESEMFDIPLTSLTVGDEGSLTGDTEDLKGRGEIRAPDGDDEIKLKVDPGDNVRTKVEPSKNFTEVEESLLIPHGPSESTPQADFPSTQGMGSLQVRETETRKEDEEAGGCSKVLQNASLHSSYKAKEVSQPPRVKKLYPELPAEIAEVPDLVVVKPLLCSERLYPELPSQPELVPFTKEQLKLLEPGSWLENVESYVEEFDSIAHQDRHEFYELLLNYSRCRKQLLLAEAELLTLMSDCQNAKSRLWTFKDEQIAVQGICADQVKVYGHHHYQRVEMNENVLGELKKLFDAKSEHLHQTLALHSYTSVLSRLQVESYIYTLLNSSAVLRSLAVYQQDQVSKLTESIPSDVCQLKECISVLFMFTRRMSEDAQFQEDILLWLQKLVSVLQRVGCPGDHFFLLNHILRCPAGVSKWAVPFIQIKVLNNPSGVFHFMQSLALLMSPVKNRAEYMCHMKPSEWKPSSSGPASGNWTLVDEGGEEDEDPETSWILLNEDDLVILLSQFPFHELFQHLLGFKAKGDYLPETTRPQEMMKIFAFANSLVELLAVGLETFNRARYRQFVKRIGYLIRMTLGYVSDHWAQYVSHSTGMGLTLQPYSVEKLQIEFDELFLRAVLYVLKAKRLGIWLFMSEMPFGTLSVPMLWKLFYLMHQAESGNLQHLCTSLQPAECKRQLQDPEHFANLEKYLSSMNSSEEICLLTTFAQMARARRTNVDEDFIKMIVLEIYEVSYVTLSTRETFSKVGRELLGAITAVHPEIISVLLDRVQETIDQVGMVSLYLFKELPLYLWQPSASEIAVIRDWLLNYSLTAVKNKLACVILEGLNWGFAEQGNLHLDQALHTEVALLVLEAYQKHLSQKPYAGLLSESMKQVSYLASIVRYGETPETSFNQWVWNLILRLKLHKNDFGTQQNCPVVPFSSTVPDMTESPMFHPLLKAVKSGMPIGCYLALAMTAVGHSIEKFCSEGIPLLGILVQTRHLRAVVHVLDKILPMFYPCQYYLLKNEQFMSNLLLFLHLDSGVPQGVTQQVTHKVAQHLTGASYGDNVKLLNSMIQAHVCVSTQPNEVGPVAVLEFWVQALISQHLWYREQPILFLMDHLCKTAFHMMQEDCVQKLLYQQHKVWFVWTVLNMESIFEEDSQLRRVVEGELVINAFTPDQALKKAQAQLKLPIVPSLQRMMIYRWAHQALATPSDHPLLPLIWQKFFLLYLHRPGPQYGLPVDGCIGRRFFQSPSHINLLKDMKRRLTEVADFHYAASKALRVPAEGSEGTAERQAGAHGYLTSPELHRELVRLFNVFILWLEDENFQKGDTYIPSLPKHYDTHRLAKVMQNQQDLWMEYLNMERIHHEFQETVGQWTETKLESHSLSCSSSAQLDFTDPLLAKERVLSNLRKHEAPQPPLVLHLVRPPVPLISSAVLLSQKDTTQLMCTDLNLLQQRARTAALRESQQVALDGELLETMPKQYVNREEQTTLHLECRGSGGKKCQGAAVVTVQFEGMHKNDAISQQIHILQKEVRQFQAEAAQPPALNVVEAAVHAENLITALVNSYKLQPTPGAQKIGISLFFTVVDYVSDETQRHPPTRQFFTSCIEILGQVFISGTKSECRKVLQTILKNRRLCSLLSPFFTPNAAPAEFIQLYEKVVKFLSEDNSDMIFMLLTKFDVKQWLMATKPPLSDRTRLLESIHLALTAWGLEPDEDILMPFNLFCKHWTHLLLYQFPDQYNDVLRLLVQSSAEQLLSPECWKATLRALGCCTPSSQQGAASADNAVLHSASDALLSDKQVMETIHWLSDFFYKLRLSKMDFKSFGLFSKWSPYMGDVKTFLEYLVKRLIDLEIASLTQDSTASSKEVLRSLHSQIVQLFKPWILVLEDSESSQQRHYPWLESDAVVASSIVQLFTDCISSLHRSFKDKLLPGDEGALRLHLLHYCEACTAPKMPECILYTFHSAYQKLEWKDLHPDQRLMEAFFKVERGSPKSCFLFLGSVLCRVNWVSVLSDAWNPSPLPETQSMVVCLLFMMILLAKEAQLVDQTDSPLLSLLGQTSSLSWHLVDLVSYQSVLGYFSSHYPPSVMLAKDSSAEHIVKLLKVSAGLSVPADGQKHRDIVPKCQAFTRQMVQFLSTLEQSGKVTFSVLEQEIAKLLDDVIAFNPPDMDSQARHMALSSLFTEVLMMMNNATIPTAEFLGGSIRTWIGQKVHGLVVLPLLTAACQSLASVRHMAETTEACIAAYFKEGSLNQNLGWGPILVSLQVPELTIQEFLQECLALGSCLTLYVYLLQCLNSEQTLRNEMKVLLILNKWLEQVYPSSAQEEAKLFLWWHQILQLSLVQMEQNDSVLTESIIRILLMLQSRQSLMAEERLSSGILGAIGLGRKSPLSNRFRVIARGMAAFLLVQVPAEDQVRLKPSSELHLTPKAQQVLTALESMTLSKQYVEYQDQILQAVQFIKHPGHCLQNGKSLLALLVNCLYPEVHYLDNIR", "length": 2535, "header": "tr|A0A9J7GSD3-1|A0A9J7GSD3_CRIGR Computationally mapped isoform of Ectopic P granules protein 5 homolog OS=Cricetulus griseus OX=10029 GN=Epg5 PE=3 SV=1 CANONICAL=A0A9J7FDE4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ6/entry", "sequence": { "sequence": "MAEAVKPRRAKAKSSRTKGKEKKKYEAPQTSDEVSLPETSREQEIPSLACELKGDDLQVSTDSQLHKDVSGWNESEMFDIPLTSLTVGDEGSLTGDTEDLKGRGEIRAPDGDDEIKLKVDPGDNVRTKVEPSKNFTEVEESLLIPHGPSESTPQADFPSTQGMGSLQVRETETRKEDEEAGGCSKVLQNASLHSSYKAKEVSQPPRVKKLYPELPAEIAEVPDLVVVKPLLCSERLYPELPSQPELVPFTKEQLKLLEPGSWLENVESYVEEFDSIAHQDRHEFYELLLNYSRCRKQLLLAEAELLTLMSDCQNAKSRLWTFKDEQIAVQGICADQVKVYGHHHYQRVEMNENVLGELKKLFDAKSEHLHQTLALHSYTSVLSRLQVESYIYTLLNSSAVLRSLAVYQQDQVSKLTESIPSDVCQLKECISVLFMFTRRMSEDAQFQEDILLWLQKLVSVLQRVGCPGDHFFLLNHILRCPAGVSKWAVPFIQIKVLNNPSGVFHFMQSLALLMSPVKNRAEYMCHMKPSEWKPSSSGPASGNWTLVDEGGEEDEDPETSWILLNEDDLVILLSQFPFHELFQHLLGFKAKGDYLPETTRPQEMMKIFAFANSLVELLAVGLETFNRARYRQFVKRIGYLIRMTLGYVSDHWAQYVSHSTGMGLTLQPYSVEKLQIEFDELFLRAVLYVLKAKRLGIWLFMSEMPFGTLSVPMLWKLFYLMHQAESGNLQHLCTSLQPAECKRQLQDPEHFANLEKYLSSMNSSEEICLLTTFAQMARARRTNVDEDFIKMIVLEIYEVSYVTLSTRETFSKVGRELLGAITAVHPEIISVLLDRVQETIDQVGMVSLYLFKELPLYLWQPSASEIAVIRDWLLNYSLTAVKNKLACVILEGLNWGFAEQGNLHLDQALHTEVALLVLEAYQKHLSQKPYAGLLSESMKQVSYLASIVRYGETPETSFNQWVWNLILRLKLHKNDFGTQQNCPVVPFSSTVPDMTESPMFHPLLKAVKSGMPIGCYLALAMTAVGHSIEKFCSEGIPLLGILVQTRHLRAVVHVLDKILPMFYPCQYYLLKNEQFMSNLLLFLHLDSGVPQGVTQQVTHKVAQHLTGASYGDNVKLLNSMIQAHVCVSTQPNEVGPVAVLEFWVQALISQHLWYREQPILFLMDHLCKTAFHMMQEDCVQKLLYQQHKNALGYHCDRSLLSSLVSWIVAGNITPSFVEGLSMSTQVWFVWTVLNMESIFEEDSQLRRVVEGELVINAFTPDQALKKAQAQLKLPIVPSLQRMMIYRWAHQALATPSDHPLLPLIWQKFFLLYLHRPGPQYGLPVDGCIGRRFFQSPSHINLLKDMKRRLTEVADFHYAASKALRVPAEGSEGTAERQAGAHGYLTSPELHRELVRLFNVFILWLEDENFQKGDTYIPSLPKHYDTHRLAKVMQNQQDLWMEYLNMERIHHEFQETVGQWTETKLESHSLSCSSSAQLDFTDPLLAKERVLSNLRKHEAPQPPLVLHLVRPPVPLISSAVLLSQKDTTQLMCTDLNLLQQRARTAALRESQQVALDGELLETMPKQYVNREEQTTLHLECRGSGGKKCQGAAVVTVQFEGMHKNDAISQQIHILQKEVRQFQAEAAQPPALNVVEAAVHAENLITALVNSYKLQPTPGAQKIGISLFFTVVDYVSDETQRHPPTRQFFTSCIEILGQVFISGTKSECRKVLQTILKNRRLCSLLSPFFTPNAAPAEFIQLYEKVVKFLSEDNSDMIFMLLTKFDVKQWLMATKPPLSDRTRLLESIHLALTAWGLEPDEDILMPFNLFCKHWTHLLLYQFPDQYNDVLRLLVQSSAEQLLSPECWKATLRALGCCTPSSQQGAASADNAVLHSASDALLSDKQVMETIHWLSDFFYKLRLSKMDFKSFGLFSKWSPYMGDVKTFLEYLVKRLIDLEIASLTQDSTASSKEVLRSLHSQIVQLFKPWILVLEDSESQQRHYPWLESDAVVASSIVQLFTDCISSLHRSFKDKLLPGDEGALRLHLLHYCEACTAPKMPECILYTFHSAYQKLEWKDLHPDQRLMEAFFKVERGSPKSCFLFLGSVLCRVNWVSVLSDAWNPSPLPETQSMVVCLLFMMILLAKEAQLVDQTDSPLLSLLGQTSSLSWHLVDLVSYQSVLGYFSSHYPPSVMLAKDSSAEHIVKLLKVSAGLSVPADGQKHRDIVPKCQAFTRQMVQFLSTLEQSGKVTFSVLEQEIAKLLDDVIAFNPPDMDSQARHMALSSLFTEVLMMMNNATIPTAEFLGGSIRTWIGQKVHGLVVLPLLTAACQSLASVRHMAETTEACIAAYFKEGSLNQNLGWGPILVSLQVPELTIQEFLQECLALGSCLTLYVYLLQCLNSEQTLRNEMKVLLILNKWLEQVYPSSAQEEAKLFLWWHQILQLSLVQMEQNDSVLTESIIRILLMLQSRQSLMAEERLSSGILGAIGLGRKSPLSNRFRVIARGMAAFLLVQVPAEDQVRLKPSSELHLTPKAQQVLTALESMTLSKQYVEYQDQILQAVQFIKHPGHCLQNGKSLLALLVNCLYPEVHYLDNIR", "length": 2571, "header": "tr|A0A9J7JEJ6-1|A0A9J7JEJ6_CRIGR Computationally mapped isoform of Ectopic P granules protein 5 homolog OS=Cricetulus griseus OX=10029 GN=Epg5 PE=3 SV=1 CANONICAL=A0A9J7FDE4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1294, "start_aa": "Thr", "end_pos": 1294, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1294", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1655, "start_aa": "Thr", "end_pos": 1655, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1655", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDE4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003616765.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652880", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652880" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE83" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Samd11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE83", "locus": {} } ], "crossref": [ { "id": "A0A9J7FE83", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FE83", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09579", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09579", "database": "CDD", "categories": [ "Protein Classification" ] 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"MPAVKKELPGREDLALALATFHPTLAALPLPPLPAYLAPLPAAAALPPAASLPASALGYEALLTPSLRPPRTYLNLHETASHLYLPRDPLAFERFSATATAAPDFQPLLDNGEPCIEVECGANRALLYVRKLCQGSKGPSIRHRGEWLTPNEFQFVSGRETAKDWKRSIRHKGKSLKTLMSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVTLPPTHALKKERTTSFSASDGDSDGSGPVCRQPGLKQENDSHVHIMKRRVHTHWDVNISFRETSCSQDNDLPTLISSVHQSHHLVMPEHPSHCDFQRGNVDIGLGPAGDLLGKRLGCSSYITSDCSSEKKVRSKSPQETLLLPELESTMAPEDHYHRLMSALSEAGPFEETQRLYHLGIPSHDLLRVRQEVATATLRSPSSLEVHLPSSTGHRRKQGLFQNREGTVSATTPSFSERELSQPPPLLSPQNAPHMALGSQLRPPFFGVPTALCQNPGYSFLPPAQAEMLVRQQELLRKQSLARLEMSELLRQKELGSTHRPQLLAPEVTLRIPEGPDELQRRGSMLVLKHSSAPLLALPPQGPPGPGPPTPPKESARSLTQKGSLNAASGRTSEPKEITGPSLWAQDVSEEPSKDSDGEDPEIAAARGGASMPSQAPAGGTRAEGKGPLSGSTMPTPLPLGFPCGTVSPYFHTGTMQGLFTDETTAPEDVNKWTVDDVCNFVGGLSGCSEYARIFREQGIDGETLPLLTEEHLLNTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPLQPPSLQAPELSPGQQLLSPATTTSPYDGPHLPTGRASPKQENGSGTIALLPGAPDPSQLL", "length": 842, "header": "tr|A0A9J7FE83-1|A0A9J7FE83_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 11 isoform X1 OS=Cricetulus griseus 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isoform X1 OS=Cricetulus griseus OX=10029 GN=Samd11 PE=4 SV=1 CANONICAL=A0A9J7FE83-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FE83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE83/entry", "sequence": { "sequence": "MPAVKKELPGREDLALALATFHPTLAALPLPPLPAYLAPLPAAAALPPAASLPASALGYEALLTPSLRPPRTYLNLHETASHLYLPRDPLAFERFSATATAAPDFQPLLDNGEPCIEVECGANRALLYVRKLCQGSKGPSIRHRGEWLTPNEFQFVSGRETAKDWKRSIRHKGKSLKTLMSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVTLPPTHALKKERTTSFSASDGDSDGSGPVCRQPGLKQENDSHVHIMKRRVHTHWDVNISFRETSCSQDNDLPTLISSVHQSHHLVMPEHPSHCDFQRGNVDIGLGPAGDLLGKRLGCSSYITSDCSSEKKVRSKSPQETLLLPELESTMAPEDHYHRLMSALSEAGPFEETQRLYHLGIPSHDLLRVRQEVATATLRSPSSLEVHLPSSTGHRRKQGLFQNREGTVSATTPSFSERELSQPPPLLSPQNAPHMALGSQLRPPFFGVPTALCQNPGYSFLPPAQAEMLVRQQELLRKQSLARLEMSELLRQKELGSTHRPQLLAPEVTLRIPEGPDELQRRGSMLVLKHSSAPLLALPPQGPPGPGPPTPPKESARSLTQKGSLNAASGRTSEPKEITGPSLWAQDVSEEPSKDSDGEDPEIAAARGGASMPSQAPAGGTRAEGKGPLSGSTMPTPLPLGFPCGTVSPYFHTGTMQGLFTDETTAPEDVNKWTVDDVCNFVGGLSGCSEYARIFREQGIDGETLPLLTEEHLLNTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPLQPPSLQAPELSPGQQLLSPATTTSPYDGPHLPTGRASPKQENGSGTIALLPGAPDPSQLL", "length": 842, "header": "tr|A0A9J7FE83-1|A0A9J7FE83_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 11 isoform X1 OS=Cricetulus griseus OX=10029 GN=Samd11 PE=4 SV=1 CANONICAL=A0A9J7FE83-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 582, "start_aa": "Thr", "end_pos": 582, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr582", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDH6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771844", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771844", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE83" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FE83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE83" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" }, { "start_pos": 824, "end_pos": 826, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FE83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FE83" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 705, "end_pos": 751, "start_aa": "Trp", "end_aa": "Leu", 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027254458.1. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDI3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDI3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833751", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833751", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDI3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ 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"phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257583" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem161b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FDJ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FDJ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750852", "url": "https://www.ncbi.nlm.nih.gov/gene/100750852", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"MGVIGIQLVVTMVMASVMQKIIPHYSLARWLLCNGSLRWYQHPSEEELRILAGKQQKGKSKKDRKYNGHIENKPLTIPKDIDLHLETKSVTEVDTLALHYFPEYQWLVDFTVAATVVYLITEVYYSFMKPTQEMNISLVWCLLVLSFAIKVLFSLTTHYFKVEDGGERSVCVTFGFFFFVKAMAVLIVTENYLEFGLETGFTNFSDSAMQFLEKQGLESQGPVSKLTFKFFLAIFCSLIGAFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLAPLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIILLCALRLAMMRSHLQAYLNLAQKCVDQMKKEAGRISTVELQKMVARVFYYLCVIALQYVAPLVMLLHTTLLLKTLGNHSWGIYPEAVSPLPVNNLPSNSVSELPSTDGKMKVTVTQITVALSSLKTIFTPLLFRGLLSFLTWWIAACLFSTSLFGLFYHQYLTVA", "length": 485, "header": "tr|A0A9J7FDJ1-1|A0A9J7FDJ1_CRIGR Isoform 1 of Transmembrane protein 161B isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem161b PE=3 SV=1 CANONICAL=A0A9J7FDJ1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FDJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ1/entry", "sequence": { "sequence": "MGVIGIQLVVTMVMASVMQKIIPHYSLARWLLCNGSLRWYQHPSEEELRILAGKQQKGKSKKDRKYNGHIENKPLTIPKDIDLHLETKSVTEVDTLALHYFPEYQWLVDFTVAATVVYLITEVYYSFMKPTQEMNISLVWCLLVLSFAIKVLFSLTTHYFKVEDGGERSVCVTFGFFFFVKAMAVLIVTENYLEFGLETGFTNFSDSAMQFLEKQGLESQGPVSKLTFKFFLAIFCSLIGAFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLAPLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIILLCALRLAMMRSHLQAYLNLAQKCVDQMKKEAGRISTVELQKMVARVFYYLCVIALQYVAPLVMLLHTTLLLKTLGNHSWGIYPEAVSPLPVNNLPSNSVSELPSTDGKMKVTVTQITVALSSLKTIFTPLLFRGLLSFLTWWIAACLFSTSLFGLFYHQYLTVA", "length": 485, "header": "tr|A0A9J7FDJ1-1|A0A9J7FDJ1_CRIGR Isoform 1 of Transmembrane protein 161B isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem161b PE=3 SV=1 CANONICAL=A0A9J7FDJ1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FID2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FID2/entry", "sequence": { "sequence": "MAVLIVTENYLEFGLETGFTNFSDSAMQFLEKQGLESQGPVSKLTFKFFLAIFCSLIGAFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLAPLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIILLCALRLAMMRSHLQAYLNLAQKCVDQMKKEAGRISTVELQKMVARVFYYLCVIALQYVAPLVMLLHTTLLLKTLGNHSWGIYPEAVSPLPVNNLPSNSVSELPSTDGKMKVTVTQITVALSSLKTIFTPLLFRGLLSFLTWWIAACLFSTSLFGLFYHQYLTVA", "length": 303, "header": "tr|A0A9J7FID2-1|A0A9J7FID2_CRIGR Computationally mapped isoform of Transmembrane protein 161B isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmem161b PE=3 SV=1 CANONICAL=A0A9J7FDJ1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GPS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPS0/entry", "sequence": { "sequence": "MKPTQEMNISLVWCLLVLSFAIKVLFSLTTHYFKVEDGGERSVCVTFGFFFFVKAMAVLIVTENYLEFGLETGFTNFSDSAMQFLEKQGLESQGPVSKLTFKFFLAIFCSLIGAFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLAPLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIILLCALRLAMMRSHLQAYLNLAQKCVDQMKKEAGRISTVELQKMVARVFYYLCVIALQYVAPLVMLLHTTLLLKTLGNHSWGIYPEAVSPLPVNNLPSNSVSELPSTDGKMKVTVTQITVALSSLKTIFTPLLFRGLLSFLTWWIAACLFSTSLFGLFYHQYLTVA", "length": 358, "header": "tr|A0A9J7GPS0-1|A0A9J7GPS0_CRIGR Computationally mapped isoform of Transmembrane protein 161B isoform X2 OS=Cricetulus griseus OX=10029 GN=Tmem161b PE=3 SV=1 CANONICAL=A0A9J7FDJ1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750852", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750852", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": 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"https://www.uniprot.org/uniprotkb/A0A9J7FDJ5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277197.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254476", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254476" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDJ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770566", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDJ5", "locus": {} } ], "crossref": [ { "id": "A0A9J7FDJ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FDJ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770566", "url": "https://www.ncbi.nlm.nih.gov/gene/100770566", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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{ "isoform_ac": "A0A9J7J8Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8Z8/entry", "sequence": { "sequence": "MALITLRRNLCHISDFWIPGTVAALKIYPADNHVRKIVKDRLRVWFCSLQPELFGVRFHHSYCKNFHSENGNDLHPVAEPWFSGERKWNRPEQSLKNEDEETPYRRLNSCTSPEEVLSFISTLDTLPVSVASAALHRVCEVGKGYDEQRLPKGILENSIFQALCCQCERDPSHLTSAGLVTVLQSLPMDPPSTLMLSLVAECQRRLQGGRLEAHHLCMLGESLVRLQGSGCEALELVLCQLQCENLKTFAPEDIVAVYRILQACPEKVDKHQAFLNAVNNFTLSIVPYLSPKSVSHVLTALVALDQTHALPLVIKLGKSVVRYIPRFTNEELRKVLEAFLYFGHSDRFLTEALERHVAALCLSLDPDVISTVMEYCSRKRILSKPILNMVAETFVCQSEKFSPRQIAESIEPFGKLNYLPPNAPALFRKLESVLVARFHHFPPQLLLKLLHSCSLIECHPVNFMSKIFSPFFLQRLQGQGKESYLDKVSLAQVTQLFMTSVLECAFYKGPKLLPQYHVKSFLTPCCSLETPLDLHLYKSVVTGLIDLLGSRLYFASKVLTPYCYTIDVEIKLDEDGFVLPFTVEEDVHKRVALCIDGPQRFCADTKHLLGKEAIKQRHLRLLGYQVVQVPYHELELLTSRLELVEYLQRKLFSQSSPVHW", "length": 660, "header": "tr|A0A9J7J8Z8-1|A0A9J7J8Z8_CRIGR Computationally mapped isoform of FAST kinase domain-containing protein 3, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Fastkd3 PE=4 SV=1 CANONICAL=A0A9J7FDK9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEM2/entry", "sequence": { "sequence": "MALITLRRNLCHISDFWIPGTVAALKIYPADNHVRKIVKDRLRVWFCSLQPELFGVRFHHSYCKNFHSENGNDLHPVAEPWFSGERKWNRPEQSLKNEDEETPYRRLNSCTSPEEVLSFISTLDTLPVSVASAALHRVCEVGKGYDEQRLPKGILENSIFQALCCQCERDPSHLTSAGLVTVLQSLPMDPPSTLMLSLVAECQRRLQGGRLEAHHLCMLGESLVRLQGSGCEALELVLCQLQCENLKTFAPEDIVAVYRILQACPEKVDKHQAFLNAVNNFTLSIVPYLSPKSVSHVLTALVALDQTHALPLVIKLGKSVVRYIPRFTNEELRKVLEAFLYFGHSDRFLTEALERHVAALCLSLDPDVISTVMEYCSRKRILSKPILNMVAETFVCQSEKFSPRQIAESIEPFGKLNYLPPNAPALFRKLESVLVARFHHFPPQLLLKLLHSCSLIECHPVNFMSKIFSPFFLQRLQGQGKESYLDKVSLAQVTQLFMTSVLECAFYKGPKLLPQYHVKSFLTPCCSLETPLDLHLYKSVVTGLIDLLGSRLYFASKVLTPYCYTIASALR", "length": 571, "header": "tr|A0A9J7JEM2-1|A0A9J7JEM2_CRIGR Computationally mapped isoform of FAST kinase domain-containing protein 3, mitochondrial isoform X3 OS=Cricetulus griseus OX=10029 GN=Fastkd3 PE=4 SV=1 CANONICAL=A0A9J7FDK9-1" }, "locus": {} } ], 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"UniProtKB", "id": "A0A9J7FDK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK9" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDK9" } ], "pmid": "" }, { "name": "ribonucleoprotein granule", "id": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253913", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253913" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDM7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103162566", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDM7", "locus": {} } ], "crossref": [ { "id": "A0A9J7FDM7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FDM7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDN5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 20% of CDS bases frameshifts :: corrected 2 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257674", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257674" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDN5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDN5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdc20b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDN5", "locus": {} } ], "crossref": [ { "id": "100751686", "url": "https://www.ncbi.nlm.nih.gov/gene/100751686", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751686", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751686", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FDN5", "url": "https://www.orthodb.org/?gene=A0A9J7FDN5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19918", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19918", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19918:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19918:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027257674", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257674", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FDN5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLDVLSCPLEEVVMRHAYLTAGCAAFDSVTMYSSFKSNFVKRLSAEIPAARSPITTRWQSSQATDLEASLKEGSLSDIPESPSVLKITPAADTLTLHESNFRFSVRFHIKESMKTPVKGHSEMNNSNFRFFKTPLAGDRGRKESVATKGQKCLNQLFSTRKGVQQMDARIHLCEKSRCVWTGMGGSRLGRVHHHDVQVAQHYVGTLDQKEIVCALKWSPDGRLLXRGCNDGLLTIWLHDXGASVQGPPLKVIPQSSAPWAMEWCPCQSEVLALGRGMKDGRLCVLDVNTGKSVQTPSTHSXVCSLICIPKTKEIATGQDAPKNNVALWTCPRLLMWGEGGVSMFLERNHIFGHDRSTVLVALQQLWFPEQSLHEVKPVEHY", "length": 382, "header": "tr|A0A9J7FDN5-1|A0A9J7FDN5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: cell division cycle protein 20 homolog B isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdc20b PE=4 SV=1 CANONICAL=A0A9J7FDN5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FDN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDN5/entry", "sequence": { "sequence": "MSLDVLSCPLEEVVMRHAYLTAGCAAFDSVTMYSSFKSNFVKRLSAEIPAARSPITTRWQSSQATDLEASLKEGSLSDIPESPSVLKITPAADTLTLHESNFRFSVRFHIKESMKTPVKGHSEMNNSNFRFFKTPLAGDRGRKESVATKGQKCLNQLFSTRKGVQQMDARIHLCEKSRCVWTGMGGSRLGRVHHHDVQVAQHYVGTLDQKEIVCALKWSPDGRLLXRGCNDGLLTIWLHDXGASVQGPPLKVIPQSSAPWAMEWCPCQSEVLALGRGMKDGRLCVLDVNTGKSVQTPSTHSXVCSLICIPKTKEIATGQDAPKNNVALWTCPRLLMWGEGGVSMFLERNHIFGHDRSTVLVALQQLWFPEQSLHEVKPVEHY", "length": 382, "header": "tr|A0A9J7FDN5-1|A0A9J7FDN5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: cell division cycle protein 20 homolog B isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdc20b PE=4 SV=1 CANONICAL=A0A9J7FDN5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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CANONICAL=A0A9J7FDT3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FDT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDT3/entry", "sequence": { "sequence": "MPSLRGGPDVRQCLLLLLPFLAAWEAGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREALCGRSEECSIHLEVIVDRPLQVFHVEVEVRDINDNPPVFPTTEKTIQFHESRLLDSRFPLEGASDADIGANALLSYKLSSSEFFFLDVQTNDELSQSLFLVLGKSLDREENAEVKLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFPQSVYKVQLLENTANGTLVVKLNASDADEGSNSEIVYSLSSDVSSTTRTKFQIDPTSGEIRTNGGLDYEERTAYEIQVIASDKGTPSMSGHCKISVKLVDINDNTPEVSITSLSLPVQENAPLGAVIALVSVSDRDSGINGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRETTADYKVVVTARDRGSPSLWATASMSVEVADVNDNAPAFAHPEYTVFVKENNPPGAHIFTVSATDADAQENALVSYSLVEQRLGERLLSSFVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPVLLSHGAVGAGGTVSQFVSRSVVSGHVVAKVRAIDADSGYNAWLSYELQSSAGNSRSLFRVGLYTGEISTTRSLDEADALHQRLLVLVRDHGEPALTATATVLVSLIENSQAPKASSKTLVDAIGREASLVDVNVYLIIAICAVSSLLVLTLLLYTALRCSATPTDRACAAGKPVLVCSSAVGTWSYSQQRRQRVCSGEGPPKTDLMAFSPSLSQGPESAEERQPPLDSEYVAKPLDVAVHHRFLHKKKHSGFYTLGDPLSSQSQTKW", "length": 831, "header": "tr|A0A9J7FDT3-1|A0A9J7FDT3_CRIGR Isoform 1 of Protocadherin alpha-2-like OS=Cricetulus griseus OX=10029 GN=LOC113833715 PE=4 SV=1 CANONICAL=A0A9J7FDT3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 298, "start_aa": "Thr", "end_pos": 298, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr298", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDT3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDT3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833715", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833715", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDT3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", 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"evidence": [ { "id": "XP_027254815", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254815" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: speckle-type POZ protein-like", "type": "synonym", "evidence": [ { "id": "XP_027254815", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254815" }, { "id": "A0A9J7FDY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDY1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FEC1-1", "uniprot_ac": "A0A9J7FEC1", "uniprot_id": "A0A9J7FEC1_CRIGR", "mass": { "chemical_mass": 58563.0, "monoisotopic_mass": 58563.0 }, "refseq": { "ac": "XP_027258065", "name": "sodium-dependent glucose transporter 1C", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258065" }, "gene_names": [ { "name": "LOC100771784", "type": "recommended", "evidence": [ { "id": "A0A9J7FEC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC1" } ] }, { "name": "LOC100771784", "type": "synonym", "evidence": [ { "id": "XP_027258065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258065" } ] } ], "protein_names": [ { "name": "Sodium-dependent glucose transporter 1C", "type": "synonym", "evidence": [ { "id": "A0A9J7FEC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC1/entry#names_and_taxonomy" } ] }, { "name": "sodium-dependent glucose transporter 1C", "type": "synonym", "evidence": [ { "id": "XP_027258065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258065" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258065", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258065" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771784", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FEC1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FEC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771784", "url": "https://www.ncbi.nlm.nih.gov/gene/100771784", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771784", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771784", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FEC1", "url": "https://www.orthodb.org/?gene=A0A9J7FEC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23121", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23121:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23121:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258065", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258065", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FEC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAVLTGETLARGLPGNHVYFNWRLRPRWLDSLFHHVIAQACARWGLTVFLLQHSHVRSPSFPGLTLTGPRRKPGGVKLELEVEFRGFGAAAAAQRLLQAETPAQNGQKAATSRRSGRARSVLRCFSTAVLYAAFLGLGVTVAILGPTFPDLARNVNRNVSSLSEIFVGRALGYLCGSVVGGVLFDCMNHFLLLGMSMLATTIGLYLIPFCKAATLLIAMMSVFGASFGALDTGANVLILALWGDEGAPHMQALHFSFALGAFLAPLLAKLAWGTSASTQNHTEPDFDLLMMNRSSEATSDSLFAVPEDMNLLWTYVSIGTYVLVVSVFLFGLFCIKRSRQKKSTASGQRARRAKYHRALLCLLFLFFFFYVGAEVTFGSYIFSFATTHVGMTESEAAGLNSIFWGTFAACRGLAIFFATVLQPGTMIVLSNIGSLVSSFFLVLFDKSPLCLWIATSVYGASMATTFPSGVSWIEQYTSISGKSAAFFVIGGTVGEMAMPAVIGILQGHYPDLPVILYTCFASAISTAVLFPVMYKLATLPL", "length": 542, "header": "tr|A0A9J7FEC1-1|A0A9J7FEC1_CRIGR Isoform 1 of Sodium-dependent glucose transporter 1C OS=Cricetulus griseus OX=10029 GN=LOC100771784 PE=4 SV=1 CANONICAL=A0A9J7FEC1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FEC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEC1/entry", "sequence": { "sequence": "MSAVLTGETLARGLPGNHVYFNWRLRPRWLDSLFHHVIAQACARWGLTVFLLQHSHVRSPSFPGLTLTGPRRKPGGVKLELEVEFRGFGAAAAAQRLLQAETPAQNGQKAATSRRSGRARSVLRCFSTAVLYAAFLGLGVTVAILGPTFPDLARNVNRNVSSLSEIFVGRALGYLCGSVVGGVLFDCMNHFLLLGMSMLATTIGLYLIPFCKAATLLIAMMSVFGASFGALDTGANVLILALWGDEGAPHMQALHFSFALGAFLAPLLAKLAWGTSASTQNHTEPDFDLLMMNRSSEATSDSLFAVPEDMNLLWTYVSIGTYVLVVSVFLFGLFCIKRSRQKKSTASGQRARRAKYHRALLCLLFLFFFFYVGAEVTFGSYIFSFATTHVGMTESEAAGLNSIFWGTFAACRGLAIFFATVLQPGTMIVLSNIGSLVSSFFLVLFDKSPLCLWIATSVYGASMATTFPSGVSWIEQYTSISGKSAAFFVIGGTVGEMAMPAVIGILQGHYPDLPVILYTCFASAISTAVLFPVMYKLATLPL", "length": 542, "header": "tr|A0A9J7FEC1-1|A0A9J7FEC1_CRIGR Isoform 1 of Sodium-dependent glucose transporter 1C OS=Cricetulus griseus OX=10029 GN=LOC100771784 PE=4 SV=1 CANONICAL=A0A9J7FEC1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258084", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258084" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FED1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100758132", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED1", "locus": {} } ], "crossref": [ { "id": "A0A9J7FED1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FED1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758132", "url": "https://www.ncbi.nlm.nih.gov/gene/100758132", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758132", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758132", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FED1", "url": "https://www.orthodb.org/?gene=A0A9J7FED1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258084", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258084", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FED1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FED1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMKLTYSYISGYHICLIFLQVIASTSENLMVTAPIEHLVARVGVQAELSCQVTPPRSVEYMEVRWFRSGHSKPVYLYKGSHGANGEAAPEYVNRIEFVKEAIGKGKVALRIHNISISDDGLYQCLFNDSAFSYVASTNLSVAAFGLKTQIHVQSPGFGGIIVECFTAGWFPRPQMEWRDSKGEVVPYDSISHSQDGERFFHMKTTLLLRNQSQESITCCVLNPLTGEEKQTNLILASNEIYNKE", "length": 244, "header": "tr|A0A9J7FED1-1|A0A9J7FED1_CRIGR Isoform 1 of Selection and upkeep of intraepithelial T-cells protein 8-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758132 PE=4 SV=1 CANONICAL=A0A9J7FED1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FED1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED1/entry", "sequence": { "sequence": "MMKLTYSYISGYHICLIFLQVIASTSENLMVTAPIEHLVARVGVQAELSCQVTPPRSVEYMEVRWFRSGHSKPVYLYKGSHGANGEAAPEYVNRIEFVKEAIGKGKVALRIHNISISDDGLYQCLFNDSAFSYVASTNLSVAAFGLKTQIHVQSPGFGGIIVECFTAGWFPRPQMEWRDSKGEVVPYDSISHSQDGERFFHMKTTLLLRNQSQESITCCVLNPLTGEEKQTNLILASNEIYNKE", "length": 244, "header": "tr|A0A9J7FED1-1|A0A9J7FED1_CRIGR Isoform 1 of Selection and upkeep of intraepithelial T-cells protein 8-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758132 PE=4 SV=1 CANONICAL=A0A9J7FED1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"name": "Coiled-coil domain-containing protein 28B isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FEI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 28B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007639592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639592" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613801.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_007639592.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639592" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc28b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4", "locus": {} } ], "crossref": [ { "id": "A0A9J7FEI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FEI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753619", "url": "https://www.ncbi.nlm.nih.gov/gene/100753619", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753619", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753619", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKYKRAH", "url": "https://omabrowser.org/oma/group/GKYKRAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FEI4", "url": "https://www.orthodb.org/?gene=A0A9J7FEI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GRN0", "url": "https://www.orthodb.org/?gene=A0A9J7GRN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13400", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13400", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13400:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13400:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639592", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FEI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFKAPGRDSCVGVCRSNTSGSPAASGPGLRSNKHPMDDKKKKRSPKPCLAQPAQASGTLRRVPVPTSHSGSLALGLPHLPSPKQRTKFKRIGKEKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDEDEEDDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEEQPAS", "length": 235, "header": "tr|A0A9J7FEI4-1|A0A9J7FEI4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 28B isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc28b PE=4 SV=1 CANONICAL=A0A9J7FEI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FEI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4/entry", "sequence": { "sequence": "MFKAPGRDSCVGVCRSNTSGSPAASGPGLRSNKHPMDDKKKKRSPKPCLAQPAQASGTLRRVPVPTSHSGSLALGLPHLPSPKQRTKFKRIGKEKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDEDEEDDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEEQPAS", "length": 235, "header": "tr|A0A9J7FEI4-1|A0A9J7FEI4_CRIGR Isoform 1 of Coiled-coil domain-containing protein 28B isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc28b PE=4 SV=1 CANONICAL=A0A9J7FEI4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRN0/entry", "sequence": { "sequence": "MDDKKKKRSPKPCLAQPAQASGTLRRVPVPTSHSGSLALGLPHLPSPKQRTKFKRIGKEKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDEDEEDDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEEQPAS", "length": 200, "header": "tr|A0A9J7GRN0-1|A0A9J7GRN0_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 28B isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc28b PE=4 SV=1 CANONICAL=A0A9J7FEI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0Z8K4-1", "protein_name": "Coiled-coil domain containing 28B", "gene_name": "CCDC28B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEERRKKRSPRGQPAPARASQLLPTSKSASFALPLPALPSQHARPRRSVLRVGRETNPCGLSGAGGVVWWCHCPCPPCRASKERVRAGAARGAPLQHSFLTEVSDVCEMEGGLLGLLSDFHSGKLQAFGKECSFEQLEHVREMQEKLARLHFGLDLCMEELPEEQKKVVADRNLDQLLAHLEELSSSIQKLHLAESPSPEEAAA", "length": 204 }, "evidence": [ { "id": "A0A9J7FEI4", "url": "https://omabrowser.org/oma/group/A0A9J7FEI4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B8A4M8-1", "protein_name": "Coiled-coil domain-containing protein 28B", "gene_name": "ccdc28b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKRKKRSPKVSLPQPPPPPINPRKLTVLPASKSATFSLGLPQPPSPKPRGKYKRSVGAMGPSKEALAVPVVPPKNTRPHREKPRAPQPAGPSRVSQSSSPLQHTFLTDVSDVREMEGGLLNLLNDFHSGKLQAFGKVCSFEQLEHVREMQERLARLHFSLDSHVEELSEDQRKNASDRNLEHLLSNLEELSTSIQKLHLAENQDLPKTSNT", "length": 213 }, "evidence": [ { "id": "A0A9J7FEI4", "url": "https://omabrowser.org/oma/group/A0A9J7FEI4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "M0R957-1", "protein_name": "Coiled coil domain containing 28B", "gene_name": "Ccdc28b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKKKKRSPKPCLTQPAQAPGTLRRVPVPTSHSGSLALGLPHLLSPKQRAKFKRVGKEKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDEEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEEQPAA", "length": 200 }, "evidence": [ { "id": "A0A9J7FEI4", "url": "https://omabrowser.org/oma/group/A0A9J7FEI4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CEG5-1", "protein_name": "Coiled-coil domain-containing protein 28B", "gene_name": "Ccdc28b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDKKKKRSPKPCLTQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRAGKEKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDEEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEDQPAA", "length": 200 }, "evidence": [ { "id": "A0A9J7FEI4", "url": "https://omabrowser.org/oma/group/A0A9J7FEI4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BUN5-1", "protein_name": "Coiled-coil domain-containing protein 28B", "gene_name": "CCDC28B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEKCRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEEQSAA", "length": 200 }, "evidence": [ { "id": "A0A9J7FEI4", "url": "https://omabrowser.org/oma/group/A0A9J7FEI4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FEQ3-1", "uniprot_ac": "A0A9J7FEQ3", "uniprot_id": "A0A9J7FEQ3_CRIGR", "mass": { "chemical_mass": 54628.0, "monoisotopic_mass": 54628.0 }, "refseq": { "ac": "XP_007640661", "name": "schlafen-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640661" }, "gene_names": [ { "name": "Slfnl1", "type": "recommended", "evidence": [ { "id": "A0A9J7FEQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3" } ] }, { "name": "Slfnl1", "type": "synonym", "evidence": [ { "id": "XP_007640661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640661" } ] } ], "protein_names": [ { "name": "Schlafen-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A9J7FEQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3/entry#names_and_taxonomy" } ] }, { "name": "schlafen-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_007640661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640661" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 8% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613862.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007640661.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640661", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640661" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slfnl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FEQ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FEQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757695", "url": "https://www.ncbi.nlm.nih.gov/gene/100757695", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757695", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757695", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FEQ3", "url": "https://www.orthodb.org/?gene=A0A9J7FEQ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12155:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12155:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007640661", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640661", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FEQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FEQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSLQLWWLSDSNHLKNPIWKDAGWWYLPPKVEAGGLGKPPEASAPVSPLGSPGQSESQAQEEHSAVRTTKIPSEEDCKTLRKSAQTQMWKSPVVSQGKQLLPELPLKEPSPEDSGLKAVPSTHTLYVGHLNPQFSVPVLACLLRDTLERLELPVAREQIEVVRRPRNTYALVRVAAPKDVLASLPWRLQMALEEQLILKELTARGKELVLSEGFESLNHREAAEEEQDDSGPSPSPSPGPSPGFRRPQLPQLPDPSPNWCWARHRQISQNRPSGVRSDSAIVHQEILGQEQLFQGAFLGSETRNVEFKRGSGEYLSLAFKHHVRRYVCAFLNSEGGSLLVGVEDSGLVQGIHCSHRDEDRTRLLVDSILQGFKPQVFPDAYTLTFIPVISTSTANMPLKVLRLTVHTPKAQGEPQLYETDQGEVFLRRDGSIQGPLSVSAIQDWCRQKWTMELGKLEEKVKELMVEKEQLQQQLRQRRSLSCSCCVL", "length": 488, "header": "tr|A0A9J7FEQ3-1|A0A9J7FEQ3_CRIGR Isoform 1 of Schlafen-like protein 1 OS=Cricetulus griseus OX=10029 GN=Slfnl1 PE=4 SV=1 CANONICAL=A0A9J7FEQ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FEQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3/entry", "sequence": { "sequence": "MPSLQLWWLSDSNHLKNPIWKDAGWWYLPPKVEAGGLGKPPEASAPVSPLGSPGQSESQAQEEHSAVRTTKIPSEEDCKTLRKSAQTQMWKSPVVSQGKQLLPELPLKEPSPEDSGLKAVPSTHTLYVGHLNPQFSVPVLACLLRDTLERLELPVAREQIEVVRRPRNTYALVRVAAPKDVLASLPWRLQMALEEQLILKELTARGKELVLSEGFESLNHREAAEEEQDDSGPSPSPSPGPSPGFRRPQLPQLPDPSPNWCWARHRQISQNRPSGVRSDSAIVHQEILGQEQLFQGAFLGSETRNVEFKRGSGEYLSLAFKHHVRRYVCAFLNSEGGSLLVGVEDSGLVQGIHCSHRDEDRTRLLVDSILQGFKPQVFPDAYTLTFIPVISTSTANMPLKVLRLTVHTPKAQGEPQLYETDQGEVFLRRDGSIQGPLSVSAIQDWCRQKWTMELGKLEEKVKELMVEKEQLQQQLRQRRSLSCSCCVL", "length": 488, "header": "tr|A0A9J7FEQ3-1|A0A9J7FEQ3_CRIGR Isoform 1 of Schlafen-like protein 1 OS=Cricetulus griseus OX=10029 GN=Slfnl1 PE=4 SV=1 CANONICAL=A0A9J7FEQ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757695", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757695", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FEQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEQ3" }, { "id": "PF04326", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04326" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Schlafen AlbA-2", "eco_id": "ECO_0000259", "start_pos": 302, "end_pos": 433, "start_aa": "Glu", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", 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"site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 978, "start_aa": "Thr", "end_pos": 978, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr978", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEW1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEW1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEW1" } ], "pmid": "" }, { "name": "manchette", "id": "GO:0002177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002177", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEW1" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEW1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1116, "end_pos": 1118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1200, "end_pos": 1202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1442, "end_pos": 1444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1669, "end_pos": 1671, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FF52-1", "uniprot_ac": "A0A9J7FF52", "uniprot_id": "A0A9J7FF52_CRIGR", "mass": { "chemical_mass": 56575.0, "monoisotopic_mass": 56575.0 }, "refseq": { "ac": "XP_027257300", "name": "uncharacterized protein LOC113834150 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257300" }, "gene_names": [ { "name": "LOC113834150", "type": "recommended", "evidence": [ { "id": "A0A9J7FF52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52" } ] }, { "name": "LOC113834150", "type": "synonym", "evidence": [ { "id": "XP_027257300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257300" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113834150 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FF52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113834150 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027257300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257300" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257300", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257300" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FF52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834150", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52", "locus": {} } ], "crossref": [ { "id": "A0A9J7FF52", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FF52", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein 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"categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113834150", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FF52", "url": "https://www.orthodb.org/?gene=A0A9J7FF52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257300", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257300", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FF52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FF52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQTPFQDGLKPSLLNMKQPRSLLRNCLKKSFPVMGCLRYWEQTMGPPSSPSSFTGPPTSTTGGLETPCSSL", "length": 508, "header": "tr|A0A9J7FF52-1|A0A9J7FF52_CRIGR Isoform 1 of Uncharacterized protein LOC113834150 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113834150 PE=4 SV=1 CANONICAL=A0A9J7FF52-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FF52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52/entry", "sequence": { 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"MAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARSDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPFPSWDYEQRDIQTLEKLGAAKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQLIYRPSN", "length": 446, "header": "tr|A0A9J7GV10-1|A0A9J7GV10_CRIGR Computationally mapped isoform of Uncharacterized protein LOC113834150 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113834150 PE=4 SV=1 CANONICAL=A0A9J7FF52-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"id": "A0A9J7FF52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA metabolic process", "id": "GO:0006259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006259", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FF52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FF52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF52" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 196, "end_pos": 342, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FF53-1", "uniprot_ac": "A0A9J7FF53", "uniprot_id": "A0A9J7FF53_CRIGR", "mass": { "chemical_mass": 40299.0, "monoisotopic_mass": 40299.0 }, "refseq": { "ac": "XP_027258756", "name": "LOW QUALITY PROTEIN: trace amine-associated receptor 7c", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258756" }, "gene_names": [ { "name": "LOC100753257", "type": "recommended", "evidence": [ { "id": "A0A9J7FF53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53" } ] }, { "name": "LOC100753257", "type": "synonym", "evidence": [ { "id": "XP_027258756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258756" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: trace amine-associated receptor 7c", "type": "synonym", "evidence": [ { "id": "XP_027258756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258756" }, { "id": "A0A9J7FF53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258756" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FF53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753257", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53", "locus": {} } ], "crossref": [ { "id": "100753257", "url": "https://www.ncbi.nlm.nih.gov/gene/100753257", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753257", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753257", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FF53", "url": "https://www.orthodb.org/?gene=A0A9J7FF53", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24249", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24249", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24249:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24249:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258756", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FF53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FF53-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTDDDSFLWDQDSILSRDVFSAPPVQLCYENLNRSCVRNPYSPGPRLILYAVFGFGAVLAVCGNLLVMMSILHFRQLHSPANFLVASLACADFLVGLTVMPFSTVRSVESCWYFGDSYCKLHSCFDGSFCYSSIFHLCFISVDRYIAVSDPLLYPTRFTASVSGKCIAFSWLLSIIYSFSLLYTGANEAGLEDLVSALTCVGGCQVAVNQSWVFINFLLFFIPTLVMITVYSKIFLIAKQQAQKIERMSDXTAKASESYKDRVAKRERKAAKSLGIAVAAFLLSWLPYFIDSIIDAFLGFITPTYVYEILVWIAYYNSAMNPLIYAFFYPWFRKAIKLIVTGRILRENSSATNLFPE", "length": 358, "header": "tr|A0A9J7FF53-1|A0A9J7FF53_CRIGR Isoform 1 of LOW QUALITY PROTEIN: trace amine-associated receptor 7c OS=Cricetulus griseus OX=10029 GN=LOC100753257 PE=3 SV=1 CANONICAL=A0A9J7FF53-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FF53-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53/entry", "sequence": { "sequence": "MSTDDDSFLWDQDSILSRDVFSAPPVQLCYENLNRSCVRNPYSPGPRLILYAVFGFGAVLAVCGNLLVMMSILHFRQLHSPANFLVASLACADFLVGLTVMPFSTVRSVESCWYFGDSYCKLHSCFDGSFCYSSIFHLCFISVDRYIAVSDPLLYPTRFTASVSGKCIAFSWLLSIIYSFSLLYTGANEAGLEDLVSALTCVGGCQVAVNQSWVFINFLLFFIPTLVMITVYSKIFLIAKQQAQKIERMSDXTAKASESYKDRVAKRERKAAKSLGIAVAAFLLSWLPYFIDSIIDAFLGFITPTYVYEILVWIAYYNSAMNPLIYAFFYPWFRKAIKLIVTGRILRENSSATNLFPE", "length": 358, "header": "tr|A0A9J7FF53-1|A0A9J7FF53_CRIGR Isoform 1 of LOW QUALITY PROTEIN: trace amine-associated receptor 7c OS=Cricetulus griseus OX=10029 GN=LOC100753257 PE=3 SV=1 CANONICAL=A0A9J7FF53-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FF53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FF53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753257", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753257", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FF53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "trace-amine receptor activity", "id": "GO:0001594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001594", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FF53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7FF53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF53" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 326, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7FFB3-1", "uniprot_ac": "A0A9J7FFB3", "uniprot_id": "A0A9J7FFB3_CRIGR", "mass": { "chemical_mass": 56803.0, "monoisotopic_mass": 56803.0 }, "refseq": { "ac": "XP_007652084", "name": "zinc finger protein 724 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652084" }, "gene_names": [ { "name": "LOC100752187", "type": "recommended", "evidence": [ { "id": "A0A9J7FFB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3" } ] }, { "name": "LOC100752187", "type": "synonym", "evidence": [ { "id": "XP_007652084", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652084" } ] } ], "protein_names": [ { "name": "Zinc finger protein 724 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7FFB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 724 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652084", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652084" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616050.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_007652084.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652084", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652084" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A9J7GQ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ22#function" }, { "database": "UniProtKB", "id": "A0A9J7GR09", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GR09#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752187", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3", "locus": {} } ], "crossref": [ { "id": "A0A9J7FFB3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7FFB3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752187", "url": "https://www.ncbi.nlm.nih.gov/gene/100752187", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752187", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752187", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FFB3", "url": "https://www.orthodb.org/?gene=A0A9J7FFB3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379:SF131", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379:SF131", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390:SF265", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390:SF265", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652084", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652084", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GR09", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GR09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GR09-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GR09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGSKRQLSFRDVAVDFSPEESECLDPAQWDLYSDVMLENYSNLVSLGLAFSKPYLITFLEQRKRSWNVKQQAVAIYPGTKPYKCKECDKAFVRNSLLIQHQRIHTGEKPYKCEQCGKTFSCSSSLTPHQRIHTGEKPYKCEQCGQAFNCSSHLYKHQRIHTGEKPYKCTECGKAFNWSSSLTQHQRIHTGEKPYKCEECGLAFNCSSHLYRHQRIHTGEKLYKCKECGKAFNCSSYLNYHQILHTGDKPYKCKECGKAFTMVSYLTRHHRIHTGEKPYKCKECDKAFNNCSALIQHQRIHTGEKPYKCEECGKAFNNSSGLTHHQRIHTGEKPYKCQECGKAFNSSSHLNYHQRIHTGEKPYRCEACSKAFNNFSALIQHQRIHTGEKPYKCEKCGKAFNNCSALSQHQRIHTGEKPYRCKECCQGFNCSSNLKQHQRIHTREKLYKFEDYGKAFNNCKALNTKESIQTGEKPYKCKESGKVFNNCFTLM", "length": 491, "header": "tr|A0A9J7FFB3-1|A0A9J7FFB3_CRIGR Isoform 1 of Zinc finger protein 724 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100752187 PE=3 SV=1 CANONICAL=A0A9J7FFB3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB3/entry", "sequence": { "sequence": 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